AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0118570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0118570 MtrunA17_Chr1g0176101 99.451 364 2 0 1 364 1 364 0.0 755
Msa0118570 MtrunA17_Chr2g0309941 47.139 367 168 7 4 347 17 380 6.41e-113 334
Msa0118570 MtrunA17_Chr1g0207581 48.045 358 162 7 4 347 74 421 3.91e-112 335
Msa0118570 MtrunA17_Chr1g0152841 52.885 312 133 4 48 347 111 420 3.41e-111 332
Msa0118570 MtrunA17_Chr3g0134521 48.000 300 144 4 60 348 93 391 1.45e-99 301
Msa0118570 MtrunA17_Chr3g0112781 43.072 332 154 5 48 350 63 388 2.67e-90 278
Msa0118570 MtrunA17_Chr5g0436191 41.615 322 164 5 50 350 58 376 1.04e-84 263
Msa0118570 MtrunA17_Chr1g0154851 40.810 321 173 5 40 350 55 368 8.56e-75 236
Msa0118570 MtrunA17_Chr5g0403841 39.871 311 177 4 45 347 67 375 1.25e-70 225
Msa0118570 MtrunA17_Chr3g0141481 36.950 341 193 7 28 350 41 377 1.69e-69 223
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0118570 AT5G06610.1 61.281 359 132 5 1 354 1 357 2.51e-157 446
Msa0118570 AT3G19540.1 51.125 311 139 4 48 347 126 434 3.42e-112 336
Msa0118570 AT1G27690.1 47.671 365 172 5 4 350 49 412 1.12e-111 333
Msa0118570 AT1G49840.1 46.281 363 172 8 4 348 86 443 1.37e-107 324
Msa0118570 AT1G79420.1 42.674 389 175 8 4 350 20 402 2.23e-99 301
Msa0118570 AT5G05840.1 43.333 330 160 5 44 349 62 388 6.76e-92 282
Msa0118570 AT5G66740.1 40.181 331 181 6 32 347 38 366 6.07e-74 234
Msa0118570 AT3G55720.1 39.053 338 169 7 43 347 57 390 1.18e-70 228
Msa0118570 AT1G75160.1 40.193 311 168 8 55 350 87 394 2.54e-66 215

Find 100 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTTCTAACCCACATATTC+TGG 0.196819 1_3:-41432935 Msa0118570:three_prime_UTR
GTTAATGGAACTTCAGAAAA+AGG 0.220805 1_3:-41434619 Msa0118570:CDS
ACCTCATTGAGGGGTGATTT+AGG 0.222575 1_3:+41435509 None:intergenic
AAAATGCTTCTTAGTGTTCT+TGG 0.223207 1_3:-41435560 Msa0118570:CDS
TCTGCATGGCTTGAGGGATT+AGG 0.236892 1_3:-41433043 Msa0118570:three_prime_UTR
CTTTGTTTCAAGCTTAGATA+TGG 0.243678 1_3:-41435735 Msa0118570:exon
TTGATAGGTTCTTCTGATAA+TGG 0.264140 1_3:+41435701 None:intergenic
GCATACATTGATTGTTAGTA+TGG 0.264720 1_3:-41432895 Msa0118570:three_prime_UTR
GCACTAAAAGTCCATTTCTT+TGG 0.271022 1_3:+41433521 None:intergenic
TCCTCTTCGCCGTGCACTTC+AGG 0.275448 1_3:-41434449 Msa0118570:intron
ATGATAAAGCATGCTATCTT+TGG 0.286269 1_3:-41433553 Msa0118570:CDS
CTGCATGGCTTGAGGGATTA+GGG 0.292410 1_3:-41433042 Msa0118570:three_prime_UTR
ATCTCTATCTGCCAATTATC+AGG 0.310067 1_3:+41434571 None:intergenic
GTCGGTGGTGGTGGTGTTAA+TGG 0.312645 1_3:-41434634 Msa0118570:CDS
TAGGGACAAATCCTACATAT+TGG 0.324957 1_3:-41433462 Msa0118570:CDS
GAAACAAAGGAAAATGAAAA+TGG 0.359062 1_3:+41435749 None:intergenic
GGCAAATGGTTCCTGATAAT+TGG 0.359506 1_3:-41434582 Msa0118570:CDS
TTGACAAGGATTCAAGCAAT+AGG 0.367414 1_3:-41433481 Msa0118570:CDS
AGGGGTGATTTAGGATGAAT+AGG 0.373094 1_3:+41435518 None:intergenic
CTCGGTGTGCACGCTGCTAA+AGG 0.374472 1_3:-41434481 Msa0118570:CDS
TCGTGTTCTGCATGGCTTGA+GGG 0.383980 1_3:-41433049 Msa0118570:three_prime_UTR
GTCCACAACAACATCTTGAT+TGG 0.384230 1_3:-41433213 Msa0118570:CDS
CAACAATTCACAGCTGCAAC+AGG 0.388041 1_3:-41434739 Msa0118570:CDS
TACTACCAGCAAGAACCTTT+TGG 0.394205 1_3:+41434536 None:intergenic
AGGGACAAATCCTACATATT+GGG 0.397990 1_3:-41433461 Msa0118570:CDS
TGACAAGGATTCAAGCAATA+GGG 0.405287 1_3:-41433480 Msa0118570:CDS
TCAAAATATAACTCTAAGAA+AGG 0.430604 1_3:-41435656 Msa0118570:CDS
ATTGTTGTTTCCCAATATGT+AGG 0.441158 1_3:+41433451 None:intergenic
GGTGGCCAAAAGGTTCTTGC+TGG 0.442056 1_3:-41434541 Msa0118570:CDS
AAGGTTTGGTGATAATCTTA+AGG 0.444872 1_3:-41433350 Msa0118570:CDS
TACTTAACATGTATAATGAA+TGG 0.446313 1_3:-41432975 Msa0118570:three_prime_UTR
CTTGGATCGGTCGGTGGTGG+TGG 0.446484 1_3:-41434643 Msa0118570:CDS
GTGAAGAATGTGTTTGCAAC+CGG 0.450494 1_3:-41434694 Msa0118570:CDS
TATGTAGGGACTAGATCCTT+TGG 0.452870 1_3:-41433704 Msa0118570:intron
AGGATGGACCTGCTATTACT+AGG 0.461843 1_3:-41433330 Msa0118570:CDS
GCCATGCAGAACACGAGAAT+AGG 0.464980 1_3:+41433056 None:intergenic
AGTTATGGATGAATTGGAGT+TGG 0.469771 1_3:-41435628 Msa0118570:CDS
AAAACTCTCAGCCGATCAAA+AGG 0.470917 1_3:-41433608 Msa0118570:CDS
AGTTCTAACCCACATATTCT+GGG 0.472172 1_3:-41432934 Msa0118570:three_prime_UTR
TGATTGTTTCTTACCACCTC+AGG 0.473945 1_3:-41433251 Msa0118570:CDS
TCTCCTACACCCAGAATATG+TGG 0.477522 1_3:+41432925 None:intergenic
GATTGTTGTTGGTGGCCAAA+AGG 0.485888 1_3:-41434551 Msa0118570:CDS
TTTGTTTCAAGCTTAGATAT+GGG 0.486594 1_3:-41435734 Msa0118570:exon
GCCTATTCTCGTGTTCTGCA+TGG 0.489588 1_3:-41433057 Msa0118570:three_prime_UTR
CAAAGGAAAATGAAAATGGT+TGG 0.490005 1_3:+41435753 None:intergenic
TGGCGTCACACACCTTGGCT+CGG 0.492783 1_3:-41434499 Msa0118570:CDS
GAGCTTGGATCGGTCGGTGG+TGG 0.494261 1_3:-41434646 Msa0118570:CDS
ATGGTTGTCGTGGACGAGCT+TGG 0.495724 1_3:-41434661 Msa0118570:CDS
GATTTAGGATGAATAGGAAC+AGG 0.498652 1_3:+41435524 None:intergenic
GAAGACTATAGAGATGTTGA+TGG 0.506980 1_3:-41433415 Msa0118570:CDS
TCTGTTAAAGGTTTCGTCAT+CGG 0.513334 1_3:-41434776 Msa0118570:intron
TGCAACAGGGTGTAGGAAGT+TGG 0.515412 1_3:-41434725 Msa0118570:CDS
GATGTTGCATTTAATGTTCA+AGG 0.515683 1_3:-41433283 Msa0118570:CDS
GTAGTAACGGCACTATTGCT+TGG 0.521284 1_3:-41434519 Msa0118570:CDS
AAAAGAACTTACCTCATTGA+GGG 0.521839 1_3:+41435499 None:intergenic
TTTGGTGATAATCTTAAGGA+TGG 0.522450 1_3:-41433346 Msa0118570:CDS
TGGCAGATAGAGATTGTTGT+TGG 0.528000 1_3:-41434562 Msa0118570:CDS
GGTGTTATGATTGCACATGC+TGG 0.531989 1_3:-41433394 Msa0118570:CDS
CTCGTGTTCTGCATGGCTTG+AGG 0.532968 1_3:-41433050 Msa0118570:three_prime_UTR
GATAGCATGCTTTATCATCT+CGG 0.533661 1_3:+41433558 None:intergenic
CAGATAGAGATTGTTGTTGG+TGG 0.537302 1_3:-41434559 Msa0118570:CDS
TTTCAAGCTTAGATATGGGT+AGG 0.539926 1_3:-41435730 Msa0118570:exon
CATATCTAAGCTTGAAACAA+AGG 0.540284 1_3:+41435736 None:intergenic
TGGACCTGCTATTACTAGGT+TGG 0.544281 1_3:-41433326 Msa0118570:CDS
AAGGTTCTTGCTGGTAGTAA+CGG 0.544977 1_3:-41434532 Msa0118570:CDS
ATTTAGTGCAGCACAGCACA+TGG 0.562606 1_3:-41433668 Msa0118570:CDS
ACTGTGATGATAACAAGGTT+TGG 0.564007 1_3:-41433364 Msa0118570:CDS
TTGCTTGGCGTCACACACCT+TGG 0.565443 1_3:-41434504 Msa0118570:CDS
TCTTCCAACCTAGTAATAGC+AGG 0.565502 1_3:+41433322 None:intergenic
TTACTAGGTTGGAAGAGTCA+TGG 0.572091 1_3:-41433315 Msa0118570:CDS
CAATCTTTGTTAAGTTCCTG+AGG 0.573721 1_3:+41433235 None:intergenic
TGTCGTGGACGAGCTTGGAT+CGG 0.576957 1_3:-41434656 Msa0118570:CDS
GCAGCGTGCACACCGAGCCA+AGG 0.577284 1_3:+41434487 None:intergenic
GTGGACGAGCTTGGATCGGT+CGG 0.581244 1_3:-41434652 Msa0118570:CDS
ACCTGAAGTGCACGGCGAAG+AGG 0.581794 1_3:+41434448 None:intergenic
AACAGGGTGTAGGAAGTTGG+AGG 0.584583 1_3:-41434722 Msa0118570:CDS
CAACAACTGTGATGATAACA+AGG 0.586246 1_3:-41433369 Msa0118570:CDS
ATGTTGCATTTAATGTTCAA+GGG 0.590841 1_3:-41433282 Msa0118570:CDS
TTAGTGCAGCACAGCACATG+GGG 0.596075 1_3:-41433666 Msa0118570:CDS
CAGAACAGAACACACTTCAA+AGG 0.599126 1_3:+41435782 None:intergenic
TCACAGCTGCAACAGGGTGT+AGG 0.606606 1_3:-41434732 Msa0118570:CDS
AAAAGTGACAATGGTTGTCG+TGG 0.609256 1_3:-41434671 Msa0118570:CDS
CTCCTACACCCAGAATATGT+GGG 0.613366 1_3:+41432926 None:intergenic
GACGAGCTTGGATCGGTCGG+TGG 0.615008 1_3:-41434649 Msa0118570:CDS
TAGAGGACTCTTATTTGACA+AGG 0.615017 1_3:-41433495 Msa0118570:CDS
TCTTTGTTAAGTTCCTGAGG+TGG 0.615936 1_3:+41433238 None:intergenic
TTTAGTGCAGCACAGCACAT+GGG 0.615973 1_3:-41433667 Msa0118570:CDS
AACCCACATATTCTGGGTGT+AGG 0.626622 1_3:-41432928 Msa0118570:three_prime_UTR
TCCTAAATCACCCCTCAATG+AGG 0.627312 1_3:-41435510 Msa0118570:intron
CTCCAATCAAGATGTTGTTG+TGG 0.628883 1_3:+41433211 None:intergenic
ACAGGGTGTAGGAAGTTGGA+GGG 0.647737 1_3:-41434721 Msa0118570:CDS
AACAATTCACAGCTGCAACA+GGG 0.653620 1_3:-41434738 Msa0118570:CDS
GATTGAACGAAGCGACAACA+CGG 0.665874 1_3:-41433581 Msa0118570:CDS
AAAGAACTTACCTCATTGAG+GGG 0.670876 1_3:+41435500 None:intergenic
ATGAACTTACCTGAAGTGCA+CGG 0.677574 1_3:+41434440 None:intergenic
GGTGTGCACGCTGCTAAAGG+CGG 0.678174 1_3:-41434478 Msa0118570:CDS
AATACAGCTGATACTGCCAA+AGG 0.683223 1_3:+41433688 None:intergenic
TGCAACCGGAAAAGTGACAA+TGG 0.685929 1_3:-41434680 Msa0118570:CDS
CAGGGTGTAGGAAGTTGGAG+GGG 0.733318 1_3:-41434720 Msa0118570:CDS
TAGTGCAGCACAGCACATGG+GGG 0.750308 1_3:-41433665 Msa0118570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAACATTAATATTAAAAG+GGG + chr1_3:41433822-41433841 None:intergenic 10.0%
!! TCATATATAAAAATAATTCA+TGG - chr1_3:41435522-41435541 Msa0118570:CDS 10.0%
!!! TTTTTTTAAACTTTTTAACT+AGG - chr1_3:41435550-41435569 Msa0118570:CDS 10.0%
!!! TAGTGTTATTTTATATAAAT+CGG + chr1_3:41435687-41435706 None:intergenic 10.0%
!! CATAAAAATAAAAATTTGCA+TGG + chr1_3:41433253-41433272 None:intergenic 15.0%
!! ATTTAGCAATATACTAAAAA+TGG + chr1_3:41433425-41433444 None:intergenic 15.0%
!!! ATATTGCTAAATATTTTTGT+CGG - chr1_3:41433433-41433452 Msa0118570:CDS 15.0%
!! ATTATAAACAACTTATTTGA+AGG + chr1_3:41434554-41434573 None:intergenic 15.0%
!! TAGTTGAATGAAATTTATTA+GGG + chr1_3:41434799-41434818 None:intergenic 15.0%
!! ATAGTTGAATGAAATTTATT+AGG + chr1_3:41434800-41434819 None:intergenic 15.0%
!!! ACAATTAATGTTTGTTTTTA+AGG + chr1_3:41434955-41434974 None:intergenic 15.0%
!!! AGTGTTATTTTATATAAATC+GGG + chr1_3:41435686-41435705 None:intergenic 15.0%
!!! TCAAAATATAACTCTAAGAA+AGG - chr1_3:41433031-41433050 Msa0118570:three_prime_UTR 20.0%
!! TAAAACATGAGTTCAAATTT+GGG + chr1_3:41433507-41433526 None:intergenic 20.0%
!! TTAAAACATGAGTTCAAATT+TGG + chr1_3:41433508-41433527 None:intergenic 20.0%
!!! TTTTTTCTTTACTTTTGGTT+TGG + chr1_3:41433540-41433559 None:intergenic 20.0%
!!! AAGCATTTTTTCTTTACTTT+TGG + chr1_3:41433545-41433564 None:intergenic 20.0%
!! GAAAAAATGCTTCTAATTAT+TGG - chr1_3:41433553-41433572 Msa0118570:CDS 20.0%
!! AAAATAAAGATCACTGAAAA+AGG + chr1_3:41433884-41433903 None:intergenic 20.0%
!!! ATTTTGTTACAATCTGTTAA+AGG - chr1_3:41433899-41433918 Msa0118570:intron 20.0%
!!! ATTTTGAATGTGATTGATTT+TGG - chr1_3:41434282-41434301 Msa0118570:intron 20.0%
!! GTTCAAATTTAATAAACTTC+AGG - chr1_3:41434720-41434739 Msa0118570:CDS 20.0%
!! TTAGATGTTTATCAAATCAT+AGG + chr1_3:41434888-41434907 None:intergenic 20.0%
!!! TAATTGTAGTTTTGATATGT+AGG - chr1_3:41434968-41434987 Msa0118570:intron 20.0%
!!! AATTGTAGTTTTGATATGTA+GGG - chr1_3:41434969-41434988 Msa0118570:intron 20.0%
!!! TTAAACTTTTTAACTAGGTT+TGG - chr1_3:41435555-41435574 Msa0118570:CDS 20.0%
!! TACTTAACATGTATAATGAA+TGG - chr1_3:41435712-41435731 Msa0118570:CDS 20.0%
! GAAACAAAGGAAAATGAAAA+TGG + chr1_3:41432941-41432960 None:intergenic 25.0%
! TTTGTTTCAAGCTTAGATAT+GGG - chr1_3:41432953-41432972 Msa0118570:three_prime_UTR 25.0%
!! CTTTCATTTTCTTCATTGAT+AGG + chr1_3:41433004-41433023 None:intergenic 25.0%
!! TGTTCTTTGTTGATTGAAAA+TGG - chr1_3:41433702-41433721 Msa0118570:intron 25.0%
!!! ACTTTTAGCTAACTTTTTCA+AGG + chr1_3:41433738-41433757 None:intergenic 25.0%
!!! AGCTAAAAGTGTTCAAATTT+AGG - chr1_3:41433748-41433767 Msa0118570:intron 25.0%
! TTACATATACATGGTAACAT+TGG + chr1_3:41433853-41433872 None:intergenic 25.0%
! GATCAAACTTTACATATACA+TGG + chr1_3:41433862-41433881 None:intergenic 25.0%
! TTAATGGAACTTCAGAAAAA+GGG - chr1_3:41434069-41434088 Msa0118570:intron 25.0%
! TCACATTCAAAATCAAGTTT+AGG + chr1_3:41434275-41434294 None:intergenic 25.0%
!!! AGAATTGATTTTGTGTCTAT+AGG + chr1_3:41434432-41434451 None:intergenic 25.0%
! TATAGACACAAAATCAATTC+TGG - chr1_3:41434431-41434450 Msa0118570:intron 25.0%
!!! AGAATTGATTTTGTGTCTAT+AGG + chr1_3:41434432-41434451 None:intergenic 25.0%
! TATAGACACAAAATCAATTC+TGG - chr1_3:41434431-41434450 Msa0118570:intron 25.0%
! AATATTCCAAACATCATCAT+AGG + chr1_3:41434594-41434613 None:intergenic 25.0%
! AGAAAAAGACAAGAAAGTTT+AGG + chr1_3:41434839-41434858 None:intergenic 25.0%
! ATGTTGCATTTAATGTTCAA+GGG - chr1_3:41435405-41435424 Msa0118570:intron 25.0%
CAAAGGAAAATGAAAATGGT+TGG + chr1_3:41432937-41432956 None:intergenic 30.0%
CATATCTAAGCTTGAAACAA+AGG + chr1_3:41432954-41432973 None:intergenic 30.0%
! CTTTGTTTCAAGCTTAGATA+TGG - chr1_3:41432952-41432971 Msa0118570:three_prime_UTR 30.0%
TTGATAGGTTCTTCTGATAA+TGG + chr1_3:41432989-41433008 None:intergenic 30.0%
! CTAAGAAAGGTTTTCAGTTA+TGG - chr1_3:41433044-41433063 Msa0118570:three_prime_UTR 30.0%
! GTTTTCAGTTATGGATGAAT+TGG - chr1_3:41433053-41433072 Msa0118570:three_prime_UTR 30.0%
AAAATGCTTCTTAGTGTTCT+TGG - chr1_3:41433127-41433146 Msa0118570:three_prime_UTR 30.0%
AAAAGAACTTACCTCATTGA+GGG + chr1_3:41433191-41433210 None:intergenic 30.0%
AAAAAGAACTTACCTCATTG+AGG + chr1_3:41433192-41433211 None:intergenic 30.0%
!!! TTTACTTTTGGTTTGGTTGA+AGG + chr1_3:41433533-41433552 None:intergenic 30.0%
GTTAATGGAACTTCAGAAAA+AGG - chr1_3:41434068-41434087 Msa0118570:intron 30.0%
AAGGTTTAGTAAAGTGTGTT+TGG + chr1_3:41434468-41434487 None:intergenic 30.0%
AAGGTTTAGTAAAGTGTGTT+TGG + chr1_3:41434468-41434487 None:intergenic 30.0%
AAGCAAATGATCCAATTCAT+TGG + chr1_3:41434776-41434795 None:intergenic 30.0%
! TTCAATCAAGTCCTTTTGAT+CGG + chr1_3:41435093-41435112 None:intergenic 30.0%
ATGATAAAGCATGCTATCTT+TGG - chr1_3:41435134-41435153 Msa0118570:intron 30.0%
!!! GGTTATTTTAGCCAAAGAAA+TGG - chr1_3:41435155-41435174 Msa0118570:intron 30.0%
!! ATTGTTGTTTCCCAATATGT+AGG + chr1_3:41435239-41435258 None:intergenic 30.0%
!! AAGGTTTGGTGATAATCTTA+AGG - chr1_3:41435337-41435356 Msa0118570:intron 30.0%
! TTTGGTGATAATCTTAAGGA+TGG - chr1_3:41435341-41435360 Msa0118570:intron 30.0%
GATGTTGCATTTAATGTTCA+AGG - chr1_3:41435404-41435423 Msa0118570:intron 30.0%
! GCATACATTGATTGTTAGTA+TGG - chr1_3:41435792-41435811 Msa0118570:five_prime_UTR 30.0%
TTTCAAGCTTAGATATGGGT+AGG - chr1_3:41432957-41432976 Msa0118570:three_prime_UTR 35.0%
AGTTATGGATGAATTGGAGT+TGG - chr1_3:41433059-41433078 Msa0118570:three_prime_UTR 35.0%
!!! GAACACTAAGAAGCATTTTG+AGG + chr1_3:41433126-41433145 None:intergenic 35.0%
TGAATAGGAACAGGAAAAAG+AGG + chr1_3:41433157-41433176 None:intergenic 35.0%
! GATTTAGGATGAATAGGAAC+AGG + chr1_3:41433166-41433185 None:intergenic 35.0%
AAAGAACTTACCTCATTGAG+GGG + chr1_3:41433190-41433209 None:intergenic 35.0%
AACATGAGTTCAAATTTGGG+TGG + chr1_3:41433504-41433523 None:intergenic 35.0%
GGATGGAATCAAATACTAGA+CGG - chr1_3:41433628-41433647 Msa0118570:CDS 35.0%
CAAATACTAGACGGTTTGAT+TGG - chr1_3:41433637-41433656 Msa0118570:CDS 35.0%
TCTGTTAAAGGTTTCGTCAT+CGG - chr1_3:41433911-41433930 Msa0118570:intron 35.0%
!!! AAAAAGGGTGTTTTGTGATG+TGG - chr1_3:41434084-41434103 Msa0118570:intron 35.0%
ATCTCTATCTGCCAATTATC+AGG + chr1_3:41434119-41434138 None:intergenic 35.0%
GTGTCTATAGGAATAGTTGA+AGG + chr1_3:41434487-41434506 None:intergenic 35.0%
! GTTGAACCTATGATGATGTT+TGG - chr1_3:41434585-41434604 Msa0118570:CDS 35.0%
GACAAGAAAGTTTAGGAATG+TGG + chr1_3:41434832-41434851 None:intergenic 35.0%
GATAGCATGCTTTATCATCT+CGG + chr1_3:41435132-41435151 None:intergenic 35.0%
GCACTAAAAGTCCATTTCTT+TGG + chr1_3:41435169-41435188 None:intergenic 35.0%
! TAGAGGACTCTTATTTGACA+AGG - chr1_3:41435192-41435211 Msa0118570:intron 35.0%
TTGACAAGGATTCAAGCAAT+AGG - chr1_3:41435206-41435225 Msa0118570:intron 35.0%
TGACAAGGATTCAAGCAATA+GGG - chr1_3:41435207-41435226 Msa0118570:intron 35.0%
TAGGGACAAATCCTACATAT+TGG - chr1_3:41435225-41435244 Msa0118570:intron 35.0%
AGGGACAAATCCTACATATT+GGG - chr1_3:41435226-41435245 Msa0118570:intron 35.0%
GAAGACTATAGAGATGTTGA+TGG - chr1_3:41435272-41435291 Msa0118570:intron 35.0%
CAACAACTGTGATGATAACA+AGG - chr1_3:41435318-41435337 Msa0118570:intron 35.0%
ACTGTGATGATAACAAGGTT+TGG - chr1_3:41435323-41435342 Msa0118570:intron 35.0%
CAATCTTTGTTAAGTTCCTG+AGG + chr1_3:41435455-41435474 None:intergenic 35.0%
! AGTTCTAACCCACATATTCT+GGG - chr1_3:41435753-41435772 Msa0118570:five_prime_UTR 35.0%
CAGAACAGAACACACTTCAA+AGG + chr1_3:41432908-41432927 None:intergenic 40.0%
! AGGGGTGATTTAGGATGAAT+AGG + chr1_3:41433172-41433191 None:intergenic 40.0%
AACAATTCACAGCTGCAACA+GGG - chr1_3:41433949-41433968 Msa0118570:intron 40.0%
GTGAAGAATGTGTTTGCAAC+CGG - chr1_3:41433993-41434012 Msa0118570:intron 40.0%
!!! GACAACCATTGTCACTTTTC+CGG + chr1_3:41434015-41434034 None:intergenic 40.0%
AAAAGTGACAATGGTTGTCG+TGG - chr1_3:41434016-41434035 Msa0118570:intron 40.0%
! GTGTTTTGTGATGTGGCAAA+TGG - chr1_3:41434091-41434110 Msa0118570:intron 40.0%
GGCAAATGGTTCCTGATAAT+TGG - chr1_3:41434105-41434124 Msa0118570:intron 40.0%
TGGCAGATAGAGATTGTTGT+TGG - chr1_3:41434125-41434144 Msa0118570:intron 40.0%
! CAGATAGAGATTGTTGTTGG+TGG - chr1_3:41434128-41434147 Msa0118570:intron 40.0%
! TACTACCAGCAAGAACCTTT+TGG + chr1_3:41434154-41434173 None:intergenic 40.0%
AAGGTTCTTGCTGGTAGTAA+CGG - chr1_3:41434155-41434174 Msa0118570:intron 40.0%
ATGAACTTACCTGAAGTGCA+CGG + chr1_3:41434250-41434269 None:intergenic 40.0%
TATGTAGGGACTAGATCCTT+TGG - chr1_3:41434983-41435002 Msa0118570:intron 40.0%
AATACAGCTGATACTGCCAA+AGG + chr1_3:41435002-41435021 None:intergenic 40.0%
ATGGGGGAGAAACAAATCAA+CGG - chr1_3:41435038-41435057 Msa0118570:intron 40.0%
AAAACTCTCAGCCGATCAAA+AGG - chr1_3:41435079-41435098 Msa0118570:intron 40.0%
! TGGACTTTTAGTGCACTTAG+AGG - chr1_3:41435175-41435194 Msa0118570:intron 40.0%
TCTTCCAACCTAGTAATAGC+AGG + chr1_3:41435368-41435387 None:intergenic 40.0%
! TTACTAGGTTGGAAGAGTCA+TGG - chr1_3:41435372-41435391 Msa0118570:intron 40.0%
! TGATTGTTTCTTACCACCTC+AGG - chr1_3:41435436-41435455 Msa0118570:intron 40.0%
TCTTTGTTAAGTTCCTGAGG+TGG + chr1_3:41435452-41435471 None:intergenic 40.0%
GTCCACAACAACATCTTGAT+TGG - chr1_3:41435474-41435493 Msa0118570:intron 40.0%
CTCCAATCAAGATGTTGTTG+TGG + chr1_3:41435479-41435498 None:intergenic 40.0%
! GAGTTCTAACCCACATATTC+TGG - chr1_3:41435752-41435771 Msa0118570:five_prime_UTR 40.0%
TCCTAAATCACCCCTCAATG+AGG - chr1_3:41433177-41433196 Msa0118570:exon 45.0%
ACCTCATTGAGGGGTGATTT+AGG + chr1_3:41433181-41433200 None:intergenic 45.0%
ATCCGAAGATTTCCTCAGGA+TGG + chr1_3:41433612-41433631 None:intergenic 45.0%
ATCCTGAGGAAATCTTCGGA+TGG - chr1_3:41433611-41433630 Msa0118570:CDS 45.0%
TTCCATCCGAAGATTTCCTC+AGG + chr1_3:41433616-41433635 None:intergenic 45.0%
CAACAATTCACAGCTGCAAC+AGG - chr1_3:41433948-41433967 Msa0118570:intron 45.0%
TGCAACCGGAAAAGTGACAA+TGG - chr1_3:41434007-41434026 Msa0118570:intron 45.0%
!! GATTGTTGTTGGTGGCCAAA+AGG - chr1_3:41434136-41434155 Msa0118570:intron 45.0%
GTAGTAACGGCACTATTGCT+TGG - chr1_3:41434168-41434187 Msa0118570:intron 45.0%
ATTTAGTGCAGCACAGCACA+TGG - chr1_3:41435019-41435038 Msa0118570:intron 45.0%
TTTAGTGCAGCACAGCACAT+GGG - chr1_3:41435020-41435039 Msa0118570:intron 45.0%
GATTGAACGAAGCGACAACA+CGG - chr1_3:41435106-41435125 Msa0118570:intron 45.0%
! GGTGTTATGATTGCACATGC+TGG - chr1_3:41435293-41435312 Msa0118570:intron 45.0%
AGGATGGACCTGCTATTACT+AGG - chr1_3:41435357-41435376 Msa0118570:intron 45.0%
TGGACCTGCTATTACTAGGT+TGG - chr1_3:41435361-41435380 Msa0118570:intron 45.0%
AACCCACATATTCTGGGTGT+AGG - chr1_3:41435759-41435778 Msa0118570:five_prime_UTR 45.0%
CTCCTACACCCAGAATATGT+GGG + chr1_3:41435764-41435783 None:intergenic 45.0%
TCTCCTACACCCAGAATATG+TGG + chr1_3:41435765-41435784 None:intergenic 45.0%
!! TATAAACATTAATATTAAAA+GGG + chr1_3:41433823-41433842 None:intergenic 5.0%
!! TTATAAACATTAATATTAAA+AGG + chr1_3:41433824-41433843 None:intergenic 5.0%
!! TTTAATATTAATGTTTATAA+TGG - chr1_3:41433824-41433843 Msa0118570:intron 5.0%
!! AGCCTGAGGGCGAGTTTTAT+CGG + chr1_3:41433585-41433604 None:intergenic 50.0%
GAAGATTTCCTCAGGATGGC+CGG + chr1_3:41433608-41433627 None:intergenic 50.0%
GGCCATCCTGAGGAAATCTT+CGG - chr1_3:41433607-41433626 Msa0118570:CDS 50.0%
TGCAACAGGGTGTAGGAAGT+TGG - chr1_3:41433962-41433981 Msa0118570:intron 50.0%
AACAGGGTGTAGGAAGTTGG+AGG - chr1_3:41433965-41433984 Msa0118570:intron 50.0%
ACAGGGTGTAGGAAGTTGGA+GGG - chr1_3:41433966-41433985 Msa0118570:intron 50.0%
CACTTGCATATGCTAGCTGC+AGG - chr1_3:41434750-41434769 Msa0118570:CDS 50.0%
CTAGCTGCAGGCCAATGAAT+TGG - chr1_3:41434762-41434781 Msa0118570:CDS 50.0%
TTAGTGCAGCACAGCACATG+GGG - chr1_3:41435021-41435040 Msa0118570:intron 50.0%
GCCTATTCTCGTGTTCTGCA+TGG - chr1_3:41435630-41435649 Msa0118570:CDS 50.0%
GCCATGCAGAACACGAGAAT+AGG + chr1_3:41435634-41435653 None:intergenic 50.0%
TCGTGTTCTGCATGGCTTGA+GGG - chr1_3:41435638-41435657 Msa0118570:CDS 50.0%
TCTGCATGGCTTGAGGGATT+AGG - chr1_3:41435644-41435663 Msa0118570:CDS 50.0%
CTGCATGGCTTGAGGGATTA+GGG - chr1_3:41435645-41435664 Msa0118570:CDS 50.0%
ACCCGATAAAACTCGCCCTC+AGG - chr1_3:41433580-41433599 Msa0118570:CDS 55.0%
!! GCCTGAGGGCGAGTTTTATC+GGG + chr1_3:41433584-41433603 None:intergenic 55.0%
TAAAACTCGCCCTCAGGCTC+CGG - chr1_3:41433586-41433605 Msa0118570:CDS 55.0%
TCACAGCTGCAACAGGGTGT+AGG - chr1_3:41433955-41433974 Msa0118570:intron 55.0%
CAGGGTGTAGGAAGTTGGAG+GGG - chr1_3:41433967-41433986 Msa0118570:intron 55.0%
ATGGTTGTCGTGGACGAGCT+TGG - chr1_3:41434026-41434045 Msa0118570:intron 55.0%
TGTCGTGGACGAGCTTGGAT+CGG - chr1_3:41434031-41434050 Msa0118570:intron 55.0%
!! GTCGGTGGTGGTGGTGTTAA+TGG - chr1_3:41434053-41434072 Msa0118570:intron 55.0%
GGTGGCCAAAAGGTTCTTGC+TGG - chr1_3:41434146-41434165 Msa0118570:intron 55.0%
TTGCTTGGCGTCACACACCT+TGG - chr1_3:41434183-41434202 Msa0118570:intron 55.0%
TAGTGCAGCACAGCACATGG+GGG - chr1_3:41435022-41435041 Msa0118570:intron 55.0%
CTCGTGTTCTGCATGGCTTG+AGG - chr1_3:41435637-41435656 Msa0118570:CDS 55.0%
GTGGACGAGCTTGGATCGGT+CGG - chr1_3:41434035-41434054 Msa0118570:intron 60.0%
TGGCGTCACACACCTTGGCT+CGG - chr1_3:41434188-41434207 Msa0118570:intron 60.0%
! CTCGGTGTGCACGCTGCTAA+AGG - chr1_3:41434206-41434225 Msa0118570:intron 60.0%
GGTGTGCACGCTGCTAAAGG+CGG - chr1_3:41434209-41434228 Msa0118570:intron 60.0%
TCCTCTTCGCCGTGCACTTC+AGG - chr1_3:41434238-41434257 Msa0118570:intron 60.0%
ACCTGAAGTGCACGGCGAAG+AGG + chr1_3:41434242-41434261 None:intergenic 60.0%
TCAGGATGGCCGGAGCCTGA+GGG + chr1_3:41433598-41433617 None:intergenic 65.0%
GACGAGCTTGGATCGGTCGG+TGG - chr1_3:41434038-41434057 Msa0118570:intron 65.0%
GAGCTTGGATCGGTCGGTGG+TGG - chr1_3:41434041-41434060 Msa0118570:intron 65.0%
! CTTGGATCGGTCGGTGGTGG+TGG - chr1_3:41434044-41434063 Msa0118570:intron 65.0%
CTCAGGATGGCCGGAGCCTG+AGG + chr1_3:41433599-41433618 None:intergenic 70.0%
CTCAGGCTCCGGCCATCCTG+AGG - chr1_3:41433597-41433616 Msa0118570:CDS 70.0%
GCAGCGTGCACACCGAGCCA+AGG + chr1_3:41434203-41434222 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 41432853 41435856 41432853 ID=Msa0118570;Name=Msa0118570
chr1_3 mRNA 41432853 41435856 41432853 ID=Msa0118570-mRNA-1;Parent=Msa0118570;Name=Msa0118570-mRNA-1;_AED=0.01;_eAED=0.01;_QI=118|1|1|1|1|1|3|339|364
chr1_3 exon 41432853 41433719 41432853 ID=Msa0118570-mRNA-1:exon:12541;Parent=Msa0118570-mRNA-1
chr1_3 exon 41434450 41434788 41434450 ID=Msa0118570-mRNA-1:exon:12540;Parent=Msa0118570-mRNA-1
chr1_3 exon 41435511 41435856 41435511 ID=Msa0118570-mRNA-1:exon:12539;Parent=Msa0118570-mRNA-1
chr1_3 five_prime_UTR 41435739 41435856 41435739 ID=Msa0118570-mRNA-1:five_prime_utr;Parent=Msa0118570-mRNA-1
chr1_3 CDS 41435511 41435738 41435511 ID=Msa0118570-mRNA-1:cds;Parent=Msa0118570-mRNA-1
chr1_3 CDS 41434450 41434788 41434450 ID=Msa0118570-mRNA-1:cds;Parent=Msa0118570-mRNA-1
chr1_3 CDS 41433192 41433719 41433192 ID=Msa0118570-mRNA-1:cds;Parent=Msa0118570-mRNA-1
chr1_3 three_prime_UTR 41432853 41433191 41432853 ID=Msa0118570-mRNA-1:three_prime_utr;Parent=Msa0118570-mRNA-1
Gene Sequence

>Msa0118570

ATGGGTAGGCTTGCACCATTATCAGAAGAACCTATCAATGAAGAAAATGAAAGAAAATTATCAAAATATAACTCTAAGAAAGGTTTTCAGTTATGGATGAATTGGAGTTGGATCAAGACTCATTTTTCACTTGTTTTCAACAAGAAATCTAACCTCAAAATGCTTCTTAGTGTTCTTGGTTGTCCTCTTTTTCCTGTTCCTATTCATCCTAAATCACCCCTCAATGAGGTTTCGTCATCGGCACAGTATATTATACAACAATTCACAGCTGCAACAGGGTGTAGGAAGTTGGAGGGGACAGTGAAGAATGTGTTTGCAACCGGAAAAGTGACAATGGTTGTCGTGGACGAGCTTGGATCGGTCGGTGGTGGTGGTGTTAATGGAACTTCAGAAAAAGGGTGTTTTGTGATGTGGCAAATGGTTCCTGATAATTGGCAGATAGAGATTGTTGTTGGTGGCCAAAAGGTTCTTGCTGGTAGTAACGGCACTATTGCTTGGCGTCACACACCTTGGCTCGGTGTGCACGCTGCTAAAGGCGGCGTTCGTCCTCTTCGCCGTGCACTTCAGGGACTAGATCCTTTGGCAGTATCAGCTGTATTTAGTGCAGCACAGCACATGGGGGAGAAACAAATCAACGGCGTAGATTGTTTCGTATTAAAACTCTCAGCCGATCAAAAGGACTTGATTGAACGAAGCGACAACACGGCCGAGATGATAAAGCATGCTATCTTTGGTTATTTTAGCCAAAGAAATGGACTTTTAGTGCACTTAGAGGACTCTTATTTGACAAGGATTCAAGCAATAGGGACAAATCCTACATATTGGGAAACAACAATGTCAACAAAAATTGAAGACTATAGAGATGTTGATGGTGTTATGATTGCACATGCTGGATCAACAACTGTGATGATAACAAGGTTTGGTGATAATCTTAAGGATGGACCTGCTATTACTAGGTTGGAAGAGTCATGGACTATTGATGATGTTGCATTTAATGTTCAAGGGTTGTCTATTGATTGTTTCTTACCACCTCAGGAACTTAACAAAGATTGTCCACAACAACATCTTGATTGGAGATCATCATTGCATAGATGA

Protein sequence

>Msa0118570

MGRLAPLSEEPINEENERKLSKYNSKKGFQLWMNWSWIKTHFSLVFNKKSNLKMLLSVLGCPLFPVPIHPKSPLNEVSSSAQYIIQQFTAATGCRKLEGTVKNVFATGKVTMVVVDELGSVGGGGVNGTSEKGCFVMWQMVPDNWQIEIVVGGQKVLAGSNGTIAWRHTPWLGVHAAKGGVRPLRRALQGLDPLAVSAVFSAAQHMGEKQINGVDCFVLKLSADQKDLIERSDNTAEMIKHAIFGYFSQRNGLLVHLEDSYLTRIQAIGTNPTYWETTMSTKIEDYRDVDGVMIAHAGSTTVMITRFGDNLKDGPAITRLEESWTIDDVAFNVQGLSIDCFLPPQELNKDCPQQHLDWRSSLHR*