AlfalfaGEDB | Msa0118570

M. sativa cultivar zhongmu-4 / Msa0118570

KEGG: -
GO: -
PFAM: PF04788.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0118570	XP_013467739.1	99.451	364	2	0	1	364	1	364	0.0	755

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0118570	A0A072VJK1	99.451	364	2	0	1	364	1	364	0.0	755

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003700	Msa0118570	0.836487	9.093159e-57	-8.615850e-47
Msa0003720	Msa0118570	0.800954	1.130972e-48	-8.615850e-47
Msa0007480	Msa0118570	0.820505	6.620635e-53	-8.615850e-47
Msa0007970	Msa0118570	0.806888	6.608122e-50	-8.615850e-47
Msa0016670	Msa0118570	0.854312	1.338880e-61	-8.615850e-47
Msa0017510	Msa0118570	0.855352	6.684735e-62	-8.615850e-47
Msa0018000	Msa0118570	0.812091	5.047318e-51	-8.615850e-47
Msa0026130	Msa0118570	0.809385	1.942750e-50	-8.615850e-47
Msa0027230	Msa0118570	0.824647	7.208017e-54	-8.615850e-47
Msa0027260	Msa0118570	0.811143	8.111952e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0118570	MtrunA17_Chr1g0176101	99.451	364	2	0	1	364	1	364	0.0	755
Msa0118570	MtrunA17_Chr2g0309941	47.139	367	168	7	4	347	17	380	6.41e-113	334
Msa0118570	MtrunA17_Chr1g0207581	48.045	358	162	7	4	347	74	421	3.91e-112	335
Msa0118570	MtrunA17_Chr1g0152841	52.885	312	133	4	48	347	111	420	3.41e-111	332
Msa0118570	MtrunA17_Chr3g0134521	48.000	300	144	4	60	348	93	391	1.45e-99	301
Msa0118570	MtrunA17_Chr3g0112781	43.072	332	154	5	48	350	63	388	2.67e-90	278
Msa0118570	MtrunA17_Chr5g0436191	41.615	322	164	5	50	350	58	376	1.04e-84	263
Msa0118570	MtrunA17_Chr1g0154851	40.810	321	173	5	40	350	55	368	8.56e-75	236
Msa0118570	MtrunA17_Chr5g0403841	39.871	311	177	4	45	347	67	375	1.25e-70	225
Msa0118570	MtrunA17_Chr3g0141481	36.950	341	193	7	28	350	41	377	1.69e-69	223

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0118570	AT5G06610.1	61.281	359	132	5	1	354	1	357	2.51e-157	446
Msa0118570	AT3G19540.1	51.125	311	139	4	48	347	126	434	3.42e-112	336
Msa0118570	AT1G27690.1	47.671	365	172	5	4	350	49	412	1.12e-111	333
Msa0118570	AT1G49840.1	46.281	363	172	8	4	348	86	443	1.37e-107	324
Msa0118570	AT1G79420.1	42.674	389	175	8	4	350	20	402	2.23e-99	301
Msa0118570	AT5G05840.1	43.333	330	160	5	44	349	62	388	6.76e-92	282
Msa0118570	AT5G66740.1	40.181	331	181	6	32	347	38	366	6.07e-74	234
Msa0118570	AT3G55720.1	39.053	338	169	7	43	347	57	390	1.18e-70	228
Msa0118570	AT1G75160.1	40.193	311	168	8	55	350	87	394	2.54e-66	215

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Find 100 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTCAGCCGATCAAA+AGG	0.470917	1_3:-41433608	Msa0118570:CDS
AAAAGAACTTACCTCATTGA+GGG	0.521839	1_3:+41435499	None:intergenic
AAAAGTGACAATGGTTGTCG+TGG	0.609256	1_3:-41434671	Msa0118570:CDS
AAAATGCTTCTTAGTGTTCT+TGG	0.223207	1_3:-41435560	Msa0118570:CDS
AAAGAACTTACCTCATTGAG+GGG	0.670876	1_3:+41435500	None:intergenic
AACAATTCACAGCTGCAACA+GGG	0.653620	1_3:-41434738	Msa0118570:CDS
AACAGGGTGTAGGAAGTTGG+AGG	0.584583	1_3:-41434722	Msa0118570:CDS
AACCCACATATTCTGGGTGT+AGG	0.626622	1_3:-41432928	Msa0118570:three_prime_UTR
AAGGTTCTTGCTGGTAGTAA+CGG	0.544977	1_3:-41434532	Msa0118570:CDS
AAGGTTTGGTGATAATCTTA+AGG	0.444872	1_3:-41433350	Msa0118570:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAGGAAAATGAAAATGGT+TGG	+	chr1_3:41432937-41432956	None:intergenic	30.0%
CATATCTAAGCTTGAAACAA+AGG	+	chr1_3:41432954-41432973	None:intergenic	30.0%
TTGATAGGTTCTTCTGATAA+TGG	+	chr1_3:41432989-41433008	None:intergenic	30.0%
AAAATGCTTCTTAGTGTTCT+TGG	-	chr1_3:41433127-41433146	Msa0118570:three_prime_UTR	30.0%
AAAAGAACTTACCTCATTGA+GGG	+	chr1_3:41433191-41433210	None:intergenic	30.0%
AAAAAGAACTTACCTCATTG+AGG	+	chr1_3:41433192-41433211	None:intergenic	30.0%
GTTAATGGAACTTCAGAAAA+AGG	-	chr1_3:41434068-41434087	Msa0118570:intron	30.0%
AAGGTTTAGTAAAGTGTGTT+TGG	+	chr1_3:41434468-41434487	None:intergenic	30.0%
AAGGTTTAGTAAAGTGTGTT+TGG	+	chr1_3:41434468-41434487	None:intergenic	30.0%
AAGCAAATGATCCAATTCAT+TGG	+	chr1_3:41434776-41434795	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	41432853	41435856	41432853	ID=Msa0118570;Name=Msa0118570
chr1_3	mRNA	41432853	41435856	41432853	ID=Msa0118570-mRNA-1;Parent=Msa0118570;Name=Msa0118570-mRNA-1;_AED=0.01;_eAED=0.01;_QI=118\|1\|1\|1\|1\|1\|3\|339\|364
chr1_3	exon	41432853	41433719	41432853	ID=Msa0118570-mRNA-1:exon:12541;Parent=Msa0118570-mRNA-1
chr1_3	exon	41434450	41434788	41434450	ID=Msa0118570-mRNA-1:exon:12540;Parent=Msa0118570-mRNA-1
chr1_3	exon	41435511	41435856	41435511	ID=Msa0118570-mRNA-1:exon:12539;Parent=Msa0118570-mRNA-1
chr1_3	five_prime_UTR	41435739	41435856	41435739	ID=Msa0118570-mRNA-1:five_prime_utr;Parent=Msa0118570-mRNA-1
chr1_3	CDS	41435511	41435738	41435511	ID=Msa0118570-mRNA-1:cds;Parent=Msa0118570-mRNA-1
chr1_3	CDS	41434450	41434788	41434450	ID=Msa0118570-mRNA-1:cds;Parent=Msa0118570-mRNA-1
chr1_3	CDS	41433192	41433719	41433192	ID=Msa0118570-mRNA-1:cds;Parent=Msa0118570-mRNA-1
chr1_3	three_prime_UTR	41432853	41433191	41432853	ID=Msa0118570-mRNA-1:three_prime_utr;Parent=Msa0118570-mRNA-1

Gene Sequence

>Msa0118570

ATGGGTAGGCTTGCACCATTATCAGAAGAACCTATCAATGAAGAAAATGAAAGAAAATTATCAAAATATAACTCTAAGAAAGGTTTTCAGTTATGGATGAATTGGAGTTGGATCAAGACTCATTTTTCACTTGTTTTCAACAAGAAATCTAACCTCAAAATGCTTCTTAGTGTTCTTGGTTGTCCTCTTTTTCCTGTTCCTATTCATCCTAAATCACCCCTCAATGAGGTTTCGTCATCGGCACAGTATATTATACAACAATTCACAGCTGCAACAGGGTGTAGGAAGTTGGAGGGGACAGTGAAGAATGTGTTTGCAACCGGAAAAGTGACAATGGTTGTCGTGGACGAGCTTGGATCGGTCGGTGGTGGTGGTGTTAATGGAACTTCAGAAAAAGGGTGTTTTGTGATGTGGCAAATGGTTCCTGATAATTGGCAGATAGAGATTGTTGTTGGTGGCCAAAAGGTTCTTGCTGGTAGTAACGGCACTATTGCTTGGCGTCACACACCTTGGCTCGGTGTGCACGCTGCTAAAGGCGGCGTTCGTCCTCTTCGCCGTGCACTTCAGGGACTAGATCCTTTGGCAGTATCAGCTGTATTTAGTGCAGCACAGCACATGGGGGAGAAACAAATCAACGGCGTAGATTGTTTCGTATTAAAACTCTCAGCCGATCAAAAGGACTTGATTGAACGAAGCGACAACACGGCCGAGATGATAAAGCATGCTATCTTTGGTTATTTTAGCCAAAGAAATGGACTTTTAGTGCACTTAGAGGACTCTTATTTGACAAGGATTCAAGCAATAGGGACAAATCCTACATATTGGGAAACAACAATGTCAACAAAAATTGAAGACTATAGAGATGTTGATGGTGTTATGATTGCACATGCTGGATCAACAACTGTGATGATAACAAGGTTTGGTGATAATCTTAAGGATGGACCTGCTATTACTAGGTTGGAAGAGTCATGGACTATTGATGATGTTGCATTTAATGTTCAAGGGTTGTCTATTGATTGTTTCTTACCACCTCAGGAACTTAACAAAGATTGTCCACAACAACATCTTGATTGGAGATCATCATTGCATAGATGA

Protein sequence

>Msa0118570

MGRLAPLSEEPINEENERKLSKYNSKKGFQLWMNWSWIKTHFSLVFNKKSNLKMLLSVLGCPLFPVPIHPKSPLNEVSSSAQYIIQQFTAATGCRKLEGTVKNVFATGKVTMVVVDELGSVGGGGVNGTSEKGCFVMWQMVPDNWQIEIVVGGQKVLAGSNGTIAWRHTPWLGVHAAKGGVRPLRRALQGLDPLAVSAVFSAAQHMGEKQINGVDCFVLKLSADQKDLIERSDNTAEMIKHAIFGYFSQRNGLLVHLEDSYLTRIQAIGTNPTYWETTMSTKIEDYRDVDGVMIAHAGSTTVMITRFGDNLKDGPAITRLEESWTIDDVAFNVQGLSIDCFLPPQELNKDCPQQHLDWRSSLHR*