AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0745470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0745470 MtrunA17_Chr5g0448591 96.923 195 6 0 1 195 348 542 1.62e-129 378
Msa0745470 MtrunA17_Chr7g0243421 54.359 195 89 0 1 195 70 264 9.66e-70 216
Msa0745470 MtrunA17_Chr2g0328761 46.392 194 103 1 1 193 304 497 2.69e-48 167
Msa0745470 MtrunA17_Chr3g0088471 40.580 207 123 0 1 207 334 540 1.01e-44 158
Msa0745470 MtrunA17_Chr8g0352171 41.117 197 112 2 1 195 186 380 1.06e-44 155
Msa0745470 MtrunA17_Chr8g0352151 38.579 197 117 2 1 195 350 544 3.56e-38 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0745470 AT4G38380.4 68.586 191 60 0 1 191 242 432 3.36e-87 266
Msa0745470 AT4G38380.3 68.586 191 60 0 1 191 280 470 1.12e-86 266
Msa0745470 AT4G38380.2 68.586 191 60 0 1 191 352 542 3.29e-86 267
Msa0745470 AT4G38380.1 68.586 191 60 0 1 191 352 542 3.29e-86 267
Msa0745470 AT4G38380.5 68.586 191 60 0 1 191 342 532 3.54e-86 267
Msa0745470 AT2G38330.1 53.333 195 91 0 1 195 313 507 5.32e-66 214
Msa0745470 AT1G51340.1 46.114 193 104 0 3 195 309 501 3.64e-48 167
Msa0745470 AT1G51340.3 46.114 193 104 0 3 195 315 507 4.65e-48 167
Msa0745470 AT1G51340.5 46.114 193 104 0 3 195 315 507 4.65e-48 167
Msa0745470 AT1G51340.2 46.114 193 104 0 3 195 315 507 4.65e-48 167
Msa0745470 AT3G08040.2 42.487 193 111 0 3 195 215 407 1.10e-47 164
Msa0745470 AT3G08040.1 42.487 193 111 0 3 195 319 511 7.00e-47 164
Msa0745470 AT1G51340.4 52.941 68 31 1 1 67 312 379 1.95e-14 72.8

Find 67 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTGCTTGACTGCAATTC+TGG 0.086773 5_1:-67018606 Msa0745470:CDS
TAGATGTTAAATTAGAATTT+TGG 0.186751 5_1:-67015743 Msa0745470:exon
CTTCAATGTCCTGGGTAAAA+AGG 0.199471 5_1:+67018558 None:intergenic
TTGATAGAGAACTTGCAATT+AGG 0.205899 5_1:+67018845 None:intergenic
TCTATAGGTGGTTTCGTTCT+TGG 0.231706 5_1:-67019344 None:intergenic
ATCTGCTTGACTGCAATTCT+GGG 0.287612 5_1:-67018605 Msa0745470:CDS
CCAGGACATTGAAGTCTTGC+AGG 0.307900 5_1:-67018549 Msa0745470:CDS
ATGCTCTGTGCTGTTTCTTA+TGG 0.310386 5_1:-67017525 Msa0745470:CDS
TGATAGAGAACTTGCAATTA+GGG 0.318084 5_1:+67018846 None:intergenic
ATATAAGCCAGTGCATTAAA+AGG 0.354533 5_1:+67018391 None:intergenic
ACAGATGCATTGGCGGTATC+TGG 0.368608 5_1:-67019200 Msa0745470:CDS
GTCTTGCAGGTTGTCAGAAC+TGG 0.377184 5_1:-67018536 Msa0745470:CDS
CATCCTGGTTATTTAATCCT+TGG 0.383914 5_1:-67015563 Msa0745470:three_prime_UTR
TGATGTACTATGAATAAGAT+TGG 0.385430 5_1:+67015628 None:intergenic
GTTCTTACAACCATGACATT+GGG 0.403282 5_1:-67019308 Msa0745470:CDS
GCTGGGATTGACTCTCTTCA+TGG 0.410403 5_1:-67018156 Msa0745470:CDS
GGAAATCAGAAACACCATAA+TGG 0.420303 5_1:+67018356 None:intergenic
GGCCTTCGCGGTGTATGGCT+GGG 0.426990 5_1:-67018173 Msa0745470:CDS
TTCCCTTCTTACAGATGCAT+TGG 0.462479 5_1:-67019210 Msa0745470:CDS
TTCAGATTACTATCAAAGAA+TGG 0.463932 5_1:-67016649 Msa0745470:intron
ATTGCTTCATAGATGTTTGT+GGG 0.471238 5_1:-67018239 Msa0745470:intron
TGCATTGGCGGTATCTGGTC+AGG 0.471384 5_1:-67019195 Msa0745470:intron
CCTTCTTACAGATGCATTGG+CGG 0.471922 5_1:-67019207 Msa0745470:CDS
GAAGAATATCGATGAAATCA+TGG 0.479196 5_1:-67015809 Msa0745470:CDS
GTGTAGTAGCTGGTTCTGTC+AGG 0.483963 5_1:-67018127 Msa0745470:intron
TTCCAGATTGGATTGCTGAC+AGG 0.491909 5_1:-67018629 Msa0745470:intron
TTACAGGATGTTCTCTGCAC+AGG 0.493052 5_1:-67015776 Msa0745470:CDS
CCTGCAAGACTTCAATGTCC+TGG 0.494430 5_1:+67018549 None:intergenic
CCATGGAGAAAGCAGCATAT+CGG 0.500594 5_1:+67018335 None:intergenic
CATGACATTGGGGACATCAA+TGG 0.501101 5_1:-67019297 Msa0745470:CDS
CCGCCAATGCATCTGTAAGA+AGG 0.501628 5_1:+67019207 None:intergenic
TGTTCTTACAACCATGACAT+TGG 0.507474 5_1:-67019309 Msa0745470:CDS
CCGATATGCTGCTTTCTCCA+TGG 0.510680 5_1:-67018335 Msa0745470:intron
TATCAAAGAATGGTCCTTGG+TGG 0.515152 5_1:-67016639 Msa0745470:CDS
GATGTACTATGAATAAGATT+GGG 0.515723 5_1:+67015629 None:intergenic
ATAAATTTCACATAAAGTGT+TGG 0.518539 5_1:+67015532 None:intergenic
TCGTCATGGTCCCGTAGCTA+TGG 0.519438 5_1:-67019270 Msa0745470:CDS
ATCAAATATGCATGCAAGTG+TGG 0.531598 5_1:-67019241 Msa0745470:CDS
CGCCAATGCATCTGTAAGAA+GGG 0.531662 5_1:+67019208 None:intergenic
AAATTGAATTTAACTTGAGA+AGG 0.536980 5_1:-67015437 None:intergenic
TACTATCAAAGAATGGTCCT+TGG 0.537381 5_1:-67016642 Msa0745470:CDS
CGCGAAGGCCAAAATGTGAA+GGG 0.541287 5_1:+67018186 None:intergenic
ACATCAATGGCTGCTCGTCA+TGG 0.545804 5_1:-67019284 Msa0745470:CDS
CTGCAAGACTTCAATGTCCT+GGG 0.549336 5_1:+67018550 None:intergenic
TTGATGTGCAGCCATAGCTA+CGG 0.550912 5_1:+67019259 None:intergenic
TCCTTGGTGGTTTCTACACA+AGG 0.551734 5_1:-67016626 Msa0745470:CDS
TCTGCTTGACTGCAATTCTG+GGG 0.554975 5_1:-67018604 Msa0745470:CDS
AATTGCTTCATAGATGTTTG+TGG 0.555379 5_1:-67018240 Msa0745470:intron
AGAACATCCTGTAAAACCTC+AGG 0.564551 5_1:+67015785 None:intergenic
TAGAGATAAGCAGACCATCC+TGG 0.577024 5_1:-67015578 Msa0745470:three_prime_UTR
ACATGAATACAAAGCTGTGA+AGG 0.579921 5_1:-67018821 Msa0745470:CDS
TGATGTGCAGCCATAGCTAC+GGG 0.580196 5_1:+67019260 None:intergenic
CTGCTTGACTGCAATTCTGG+GGG 0.584578 5_1:-67018603 Msa0745470:CDS
TAACGTACAAACACGTAATG+TGG 0.590326 5_1:+67015488 None:intergenic
CCGCGAAGGCCAAAATGTGA+AGG 0.596867 5_1:+67018185 None:intergenic
TTCTTACAACCATGACATTG+GGG 0.605217 5_1:-67019307 Msa0745470:CDS
ATCCCAGCCATACACCGCGA+AGG 0.623797 5_1:+67018171 None:intergenic
GGTTGTCAGAACTGGAGTGT+TGG 0.641228 5_1:-67018528 Msa0745470:intron
AAGTGTTGGTATTTACACCA+AGG 0.645164 5_1:+67015546 None:intergenic
TGACAGAACCAGCTACTACA+CGG 0.647341 5_1:+67018129 None:intergenic
CATTGATGTCCCCAATGTCA+TGG 0.647477 5_1:+67019298 None:intergenic
GCGAAGGCCAAAATGTGAAG+GGG 0.655588 5_1:+67018187 None:intergenic
ACACCAAGGATTAAATAACC+AGG 0.656505 5_1:+67015560 None:intergenic
CAAGGATTAAATAACCAGGA+TGG 0.673706 5_1:+67015564 None:intergenic
TCGATGAAATCATGGACCTG+AGG 0.677727 5_1:-67015801 Msa0745470:CDS
TAGACACAGCTATTAATGAG+AGG 0.683820 5_1:-67015467 Msa0745470:three_prime_UTR
TCCTTGTGTAGAAACCACCA+AGG 0.734706 5_1:+67016625 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTATTCTTACAATTT+AGG - chr5_1:67016054-67016073 Msa0745470:intron 10.0%
!!! TATTATTTTATTTCTATCAT+TGG - chr5_1:67018303-67018322 Msa0745470:intron 10.0%
!!! TATTTTTTTATTTCTATCAT+TGG - chr5_1:67018429-67018448 Msa0745470:intron 10.0%
!!! CTTTTAAAATAAAATCAATA+CGG - chr5_1:67018633-67018652 Msa0745470:intron 10.0%
!!! TTTTAAAATAAAATCAATAC+GGG - chr5_1:67018634-67018653 Msa0745470:intron 10.0%
!!! CAAAATAATAATTAGATTTT+TGG - chr5_1:67019064-67019083 Msa0745470:intron 10.0%
!!! AATTACTCATTTTGTATTAA+AGG - chr5_1:67015978-67015997 Msa0745470:intron 15.0%
!! TTGTAAGAATAATTAAAGAA+TGG + chr5_1:67016051-67016070 None:intergenic 15.0%
!! ATATTTAAATAACATACGAT+TGG + chr5_1:67017380-67017399 None:intergenic 15.0%
!! TAATAATAATAGATCTATCA+CGG + chr5_1:67017670-67017689 None:intergenic 15.0%
!! AATAAGTTATTGGATAAATA+AGG - chr5_1:67017894-67017913 Msa0745470:intron 15.0%
!! ATAAGTTATTGGATAAATAA+GGG - chr5_1:67017895-67017914 Msa0745470:intron 15.0%
!!! TAGATGTTAAATTAGAATTT+TGG - chr5_1:67019032-67019051 Msa0745470:intron 15.0%
!!! TTACTTTCATTTTCTTAAAC+TGG - chr5_1:67015647-67015666 Msa0745470:three_prime_UTR 20.0%
!! TTAAACTGGTAATAGTTATA+GGG - chr5_1:67015661-67015680 Msa0745470:three_prime_UTR 20.0%
!! ATATGTAATCTATCCATTTA+AGG - chr5_1:67016757-67016776 Msa0745470:intron 20.0%
!! CTAACTATTCTAATATAAGA+TGG + chr5_1:67016810-67016829 None:intergenic 20.0%
!!! AACATATCCTATATTTTCTA+AGG + chr5_1:67016928-67016947 None:intergenic 20.0%
!!! TATGCAGTTGTTATTTTATT+AGG - chr5_1:67017802-67017821 Msa0745470:intron 20.0%
!! GTTATTATATTAATGTGTAG+CGG - chr5_1:67017830-67017849 Msa0745470:intron 20.0%
!! AAAAAAATTATGTGAAACCT+AGG + chr5_1:67018554-67018573 None:intergenic 20.0%
!!! TTCCTATTAGTTTTTCTTTT+AGG + chr5_1:67018582-67018601 None:intergenic 20.0%
!! AAAAATTAACTCTCCATATA+CGG + chr5_1:67018747-67018766 None:intergenic 20.0%
!! TTCTTATTGTCTGATTAAAA+GGG + chr5_1:67018815-67018834 None:intergenic 20.0%
!! TTTCTTATTGTCTGATTAAA+AGG + chr5_1:67018816-67018835 None:intergenic 20.0%
!!! TGTTAAATTAGAATTTTGGT+TGG - chr5_1:67019036-67019055 Msa0745470:intron 20.0%
!! ATAAATTTCACATAAAGTGT+TGG + chr5_1:67019246-67019265 None:intergenic 20.0%
! CTTAAACTGGTAATAGTTAT+AGG - chr5_1:67015660-67015679 Msa0745470:three_prime_UTR 25.0%
! AAATTAGTTAAGCCAACAAA+AGG - chr5_1:67015696-67015715 Msa0745470:three_prime_UTR 25.0%
!!! TTGTTACCTTTTATTTAGAC+AGG - chr5_1:67015755-67015774 Msa0745470:exon 25.0%
! ACTTCTATCTTACTATTCAT+AGG - chr5_1:67015906-67015925 Msa0745470:intron 25.0%
! TTACAATTTAGGAAAGCTAT+GGG - chr5_1:67016065-67016084 Msa0745470:intron 25.0%
!!! ACATATTTACCTATTTTGAC+AGG + chr5_1:67016743-67016762 None:intergenic 25.0%
! AATAAATACGAGACAAGTAT+CGG - chr5_1:67016868-67016887 Msa0745470:intron 25.0%
!! TGTATGCTTAGTTAAGATTT+TGG + chr5_1:67017009-67017028 None:intergenic 25.0%
!!! ACGAATGGATTTTTCAAAAA+AGG - chr5_1:67017048-67017067 Msa0745470:intron 25.0%
!!! AATGGATTTTTCAAAAAAGG+AGG - chr5_1:67017051-67017070 Msa0745470:intron 25.0%
! AACAAAACAGGATTAAATCA+AGG + chr5_1:67017462-67017481 None:intergenic 25.0%
!! ATTAGGAACAGTTATGTTTT+AGG - chr5_1:67017859-67017878 Msa0745470:intron 25.0%
! GTTACTAGAGAATAAGTTAT+TGG - chr5_1:67017884-67017903 Msa0745470:intron 25.0%
!!! ATGTTGATAGGCATTTTATT+AGG - chr5_1:67017930-67017949 Msa0745470:intron 25.0%
!!! TGTTGATAGGCATTTTATTA+GGG - chr5_1:67017931-67017950 Msa0745470:intron 25.0%
!!! TTCTATTCTGTTTCTATGTT+TGG - chr5_1:67018040-67018059 Msa0745470:intron 25.0%
! TTCAGATTACTATCAAAGAA+TGG - chr5_1:67018126-67018145 Msa0745470:intron 25.0%
! AACGTAATTAACATCATTCT+TGG - chr5_1:67018243-67018262 Msa0745470:intron 25.0%
! CACCTAAAAGAAAAACTAAT+AGG - chr5_1:67018577-67018596 Msa0745470:CDS 25.0%
! AACTAATAGGAATTAAGAAC+TGG - chr5_1:67018590-67018609 Msa0745470:CDS 25.0%
! AAAATTAACTCTCCATATAC+GGG + chr5_1:67018746-67018765 None:intergenic 25.0%
! GATGTACTATGAATAAGATT+GGG + chr5_1:67019149-67019168 None:intergenic 25.0%
! TGATGTACTATGAATAAGAT+TGG + chr5_1:67019150-67019169 None:intergenic 25.0%
GAAAGTAAAAACAGTACACA+AGG + chr5_1:67015635-67015654 None:intergenic 30.0%
TGCGAAGCTTAAAATAAACT+AGG + chr5_1:67015837-67015856 None:intergenic 30.0%
TGATAGAGAACTTGCAATTA+GGG + chr5_1:67015932-67015951 None:intergenic 30.0%
TTGATAGAGAACTTGCAATT+AGG + chr5_1:67015933-67015952 None:intergenic 30.0%
TCAAAACTTCATGCACAAAA+AGG + chr5_1:67016014-67016033 None:intergenic 30.0%
CTTACAATTTAGGAAAGCTA+TGG - chr5_1:67016064-67016083 Msa0745470:intron 30.0%
ACAATGTACATAAACATCTG+AGG + chr5_1:67016318-67016337 None:intergenic 30.0%
ATATAAGCCAGTGCATTAAA+AGG + chr5_1:67016387-67016406 None:intergenic 30.0%
!! ATTTTTGATGGTCTCCATTA+TGG - chr5_1:67016405-67016424 Msa0745470:intron 30.0%
TTCGACAAAAAAACTTACCA+TGG + chr5_1:67016460-67016479 None:intergenic 30.0%
AATTGCTTCATAGATGTTTG+TGG - chr5_1:67016535-67016554 Msa0745470:intron 30.0%
ATTGCTTCATAGATGTTTGT+GGG - chr5_1:67016536-67016555 Msa0745470:intron 30.0%
TGTTTCTTTCCTGTCAAAAT+AGG - chr5_1:67016731-67016750 Msa0745470:intron 30.0%
TGTAATCTATCCATTTAAGG+TGG - chr5_1:67016760-67016779 Msa0745470:intron 30.0%
CGTATTTATTCATCATAGGT+GGG + chr5_1:67016858-67016877 None:intergenic 30.0%
TCGTATTTATTCATCATAGG+TGG + chr5_1:67016859-67016878 None:intergenic 30.0%
GTCTCGTATTTATTCATCAT+AGG + chr5_1:67016862-67016881 None:intergenic 30.0%
CGTAGTTCCTTAGAAAATAT+AGG - chr5_1:67016918-67016937 Msa0745470:intron 30.0%
TTAGACATTACAATCACGAA+TGG - chr5_1:67017033-67017052 Msa0745470:intron 30.0%
!! TTAATCCTGTTTTGTTGAGA+TGG - chr5_1:67017466-67017485 Msa0745470:intron 30.0%
! AAGATTGTAAAGCATTTGTC+TGG - chr5_1:67017546-67017565 Msa0745470:intron 30.0%
TCAGTAAATCTAAGAAAGGA+GGG + chr5_1:67017607-67017626 None:intergenic 30.0%
ATCAGTAAATCTAAGAAAGG+AGG + chr5_1:67017608-67017627 None:intergenic 30.0%
!!! TTTTATTAGGGACTGGTTAT+TGG - chr5_1:67017943-67017962 Msa0745470:intron 30.0%
ACAACAAAAAAGAGCTTGAA+CGG + chr5_1:67018083-67018102 None:intergenic 30.0%
! TTTTTCTCCTCAAACGTTTT+AGG + chr5_1:67018363-67018382 None:intergenic 30.0%
AATTACCATAATGAGTTCCT+AGG - chr5_1:67018534-67018553 Msa0745470:CDS 30.0%
AAATAAATACAGCATGATCC+TGG - chr5_1:67018713-67018732 Msa0745470:intron 30.0%
GAAGAATATCGATGAAATCA+TGG - chr5_1:67018966-67018985 Msa0745470:intron 30.0%
! TTTTTCTGTAGTGCTTATGT+AGG - chr5_1:67019087-67019106 Msa0745470:intron 30.0%
TGTTCTTACAACCATGACAT+TGG - chr5_1:67015466-67015485 Msa0745470:three_prime_UTR 35.0%
GTTCTTACAACCATGACATT+GGG - chr5_1:67015467-67015486 Msa0745470:three_prime_UTR 35.0%
TTCTTACAACCATGACATTG+GGG - chr5_1:67015468-67015487 Msa0745470:three_prime_UTR 35.0%
ATCAAATATGCATGCAAGTG+TGG - chr5_1:67015534-67015553 Msa0745470:three_prime_UTR 35.0%
! CATTATAGTCAGCCTTTTGT+TGG + chr5_1:67015711-67015730 None:intergenic 35.0%
ACGATGCCTGTCTAAATAAA+AGG + chr5_1:67015764-67015783 None:intergenic 35.0%
ACATGAATACAAAGCTGTGA+AGG - chr5_1:67015954-67015973 Msa0745470:intron 35.0%
!!! ATGAAGTTTTGAGCCTTTGA+TGG - chr5_1:67016022-67016041 Msa0745470:intron 35.0%
TAAAGAATGGAAGCCATCAA+AGG + chr5_1:67016038-67016057 None:intergenic 35.0%
TTCAATGTCCTGGGTAAAAA+GGG + chr5_1:67016219-67016238 None:intergenic 35.0%
! TTCTCAACCTTTTAATGCAC+TGG - chr5_1:67016377-67016396 Msa0745470:intron 35.0%
!!! GCACTGGCTTATATTTTTGA+TGG - chr5_1:67016393-67016412 Msa0745470:intron 35.0%
GGAAATCAGAAACACCATAA+TGG + chr5_1:67016422-67016441 None:intergenic 35.0%
CCTTGCAAAACATATTACCA+GGG + chr5_1:67016501-67016520 None:intergenic 35.0%
ACCTTGCAAAACATATTACC+AGG + chr5_1:67016502-67016521 None:intergenic 35.0%
GGAAAATACCAAAAATGCTG+AGG + chr5_1:67016570-67016589 None:intergenic 35.0%
! GTATTTTCCCCTTCACATTT+TGG - chr5_1:67016581-67016600 Msa0745470:intron 35.0%
GTTAAAGTAGCCACCTTAAA+TGG + chr5_1:67016773-67016792 None:intergenic 35.0%
TATCGGATACGATATGTATC+CGG - chr5_1:67016885-67016904 Msa0745470:intron 35.0%
!! CATTGTTTCTGTTTCCATTC+TGG + chr5_1:67017233-67017252 None:intergenic 35.0%
TACATCACTTGTATTCGTGT+CGG + chr5_1:67017335-67017354 None:intergenic 35.0%
! TCCAAGTCCATAGTTGATTT+CGG - chr5_1:67017501-67017520 Msa0745470:CDS 35.0%
AGTCTAACCGAAATCAACTA+TGG + chr5_1:67017511-67017530 None:intergenic 35.0%
TCTGGCAATAGTATACAGTA+TGG - chr5_1:67017564-67017583 Msa0745470:intron 35.0%
CTGGCAATAGTATACAGTAT+GGG - chr5_1:67017565-67017584 Msa0745470:intron 35.0%
CAGTAAATCTAAGAAAGGAG+GGG + chr5_1:67017606-67017625 None:intergenic 35.0%
CGCATCAGTAAATCTAAGAA+AGG + chr5_1:67017611-67017630 None:intergenic 35.0%
TTAGATTTACTGATGCGAGA+TGG - chr5_1:67017614-67017633 Msa0745470:intron 35.0%
ATGTGTAGCGGTTATGTATT+AGG - chr5_1:67017842-67017861 Msa0745470:intron 35.0%
TGGATAAATAAGGGATCTGA+AGG - chr5_1:67017904-67017923 Msa0745470:intron 35.0%
ATCTGAAGGACAATGTTGAT+AGG - chr5_1:67017918-67017937 Msa0745470:intron 35.0%
! ATAGGCATTTTATTAGGGAC+TGG - chr5_1:67017936-67017955 Msa0745470:intron 35.0%
!! TCTGTTTCTATGTTTGGTAC+CGG - chr5_1:67018046-67018065 Msa0745470:intron 35.0%
TTGAACGGTATGATAGAAAC+CGG + chr5_1:67018068-67018087 None:intergenic 35.0%
TACTATCAAAGAATGGTCCT+TGG - chr5_1:67018133-67018152 Msa0745470:CDS 35.0%
TCATAAAGCACAGATGCATT+TGG + chr5_1:67018215-67018234 None:intergenic 35.0%
AAACGTTTGAGGAGAAAAAG+TGG - chr5_1:67018364-67018383 Msa0745470:CDS 35.0%
! TTTTCCCCTCAAACGTTTTA+GGG + chr5_1:67018490-67018509 None:intergenic 35.0%
! TTTTTCCCCTCAAACGTTTT+AGG + chr5_1:67018491-67018510 None:intergenic 35.0%
TGAAACCTAGGAACTCATTA+TGG + chr5_1:67018542-67018561 None:intergenic 35.0%
TAGGAATTAAGAACTGGAGA+AGG - chr5_1:67018596-67018615 Msa0745470:CDS 35.0%
ATTAAGAACTGGAGAAGGAA+AGG - chr5_1:67018601-67018620 Msa0745470:CDS 35.0%
! CTCTGCTGCTTAATATTATG+TGG - chr5_1:67018860-67018879 Msa0745470:intron 35.0%
TTGTAACTCATGTTTGCAGA+TGG - chr5_1:67018925-67018944 Msa0745470:intron 35.0%
TGTAACTCATGTTTGCAGAT+GGG - chr5_1:67018926-67018945 Msa0745470:intron 35.0%
CAAGGATTAAATAACCAGGA+TGG + chr5_1:67019214-67019233 None:intergenic 35.0%
CATCCTGGTTATTTAATCCT+TGG - chr5_1:67019212-67019231 Msa0745470:CDS 35.0%
ACACCAAGGATTAAATAACC+AGG + chr5_1:67019218-67019237 None:intergenic 35.0%
!! AAGTGTTGGTATTTACACCA+AGG + chr5_1:67019232-67019251 None:intergenic 35.0%
TAACGTACAAACACGTAATG+TGG + chr5_1:67019290-67019309 None:intergenic 35.0%
TAGACACAGCTATTAATGAG+AGG - chr5_1:67019308-67019327 Msa0745470:CDS 35.0%
TTCCCTTCTTACAGATGCAT+TGG - chr5_1:67015565-67015584 Msa0745470:three_prime_UTR 40.0%
GTAAAAACAGTACACAAGGC+AGG + chr5_1:67015631-67015650 None:intergenic 40.0%
TCAGCAATCCAATCTGGAAA+AGG + chr5_1:67016145-67016164 None:intergenic 40.0%
ATCTGCTTGACTGCAATTCT+GGG - chr5_1:67016170-67016189 Msa0745470:intron 40.0%
! TTTAGCTACCCTTTTTACCC+AGG - chr5_1:67016208-67016227 Msa0745470:intron 40.0%
CTTCAATGTCCTGGGTAAAA+AGG + chr5_1:67016220-67016239 None:intergenic 40.0%
!! AACTGGAGTGTTGGTATGTA+TGG - chr5_1:67016256-67016275 Msa0745470:intron 40.0%
! ATAAACATCTGAGGCAGACA+TGG + chr5_1:67016309-67016328 None:intergenic 40.0%
! CCCTGGTAATATGTTTTGCA+AGG - chr5_1:67016498-67016517 Msa0745470:intron 40.0%
CTTCATGATGATCACATGCA+TGG + chr5_1:67016698-67016717 None:intergenic 40.0%
GACTCATTGTAAACTGCAAG+CGG - chr5_1:67017088-67017107 Msa0745470:intron 40.0%
TGCTTGTGCTAGAAAAACAG+AGG - chr5_1:67017152-67017171 Msa0745470:intron 40.0%
! AGGAAGAAGCATGACAAAGA+GGG - chr5_1:67017172-67017191 Msa0745470:intron 40.0%
!! ATGCTCTGTGCTGTTTCTTA+TGG - chr5_1:67017250-67017269 Msa0745470:intron 40.0%
TCGTATCTTGACGTATCTGT+CGG - chr5_1:67017305-67017324 Msa0745470:intron 40.0%
ACAGACCATCTCAACAAAAC+AGG + chr5_1:67017474-67017493 None:intergenic 40.0%
ACCGAAATCAACTATGGACT+TGG + chr5_1:67017505-67017524 None:intergenic 40.0%
TATCAAAGAATGGTCCTTGG+TGG - chr5_1:67018136-67018155 Msa0745470:CDS 40.0%
! CAAGGATTTTCAGATTGCAG+AGG - chr5_1:67018167-67018186 Msa0745470:CDS 40.0%
TCCTTAGCCTAAAACGTTTG+AGG - chr5_1:67018353-67018372 Msa0745470:CDS 40.0%
!! TCCTCAAACGTTTTAGGCTA+AGG + chr5_1:67018357-67018376 None:intergenic 40.0%
GTTTCACATGTCTATTTGCC+TGG - chr5_1:67018451-67018470 Msa0745470:intron 40.0%
TCCTTACCCTAAAACGTTTG+AGG - chr5_1:67018481-67018500 Msa0745470:intron 40.0%
CCTTACCCTAAAACGTTTGA+GGG - chr5_1:67018482-67018501 Msa0745470:intron 40.0%
CTTACCCTAAAACGTTTGAG+GGG - chr5_1:67018483-67018502 Msa0745470:intron 40.0%
AGGGGAAAAAGTGACTTAGA+AGG - chr5_1:67018501-67018520 Msa0745470:intron 40.0%
GGAAAAAGTGACTTAGAAGG+AGG - chr5_1:67018504-67018523 Msa0745470:intron 40.0%
AGAACATCCTGTAAAACCTC+AGG + chr5_1:67018993-67019012 None:intergenic 40.0%
CATTGATGTCCCCAATGTCA+TGG + chr5_1:67015480-67015499 None:intergenic 45.0%
CATGACATTGGGGACATCAA+TGG - chr5_1:67015478-67015497 Msa0745470:three_prime_UTR 45.0%
TTGATGTGCAGCCATAGCTA+CGG + chr5_1:67015519-67015538 None:intergenic 45.0%
CGCCAATGCATCTGTAAGAA+GGG + chr5_1:67015570-67015589 None:intergenic 45.0%
CCTTCTTACAGATGCATTGG+CGG - chr5_1:67015568-67015587 Msa0745470:three_prime_UTR 45.0%
ATCTGGAAAAGGACGTCATC+AGG + chr5_1:67016134-67016153 None:intergenic 45.0%
! GATGACGTCCTTTTCCAGAT+TGG - chr5_1:67016134-67016153 Msa0745470:intron 45.0%
TTCCAGATTGGATTGCTGAC+AGG - chr5_1:67016146-67016165 Msa0745470:intron 45.0%
CATCTGCTTGACTGCAATTC+TGG - chr5_1:67016169-67016188 Msa0745470:intron 45.0%
TCTGCTTGACTGCAATTCTG+GGG - chr5_1:67016171-67016190 Msa0745470:intron 45.0%
CTGCAAGACTTCAATGTCCT+GGG + chr5_1:67016228-67016247 None:intergenic 45.0%
!! GTTGAGAAGCACTGACAAAC+TGG + chr5_1:67016365-67016384 None:intergenic 45.0%
CCATGGAGAAAGCAGCATAT+CGG + chr5_1:67016443-67016462 None:intergenic 45.0%
TTGTTACAATGTTCCTGCCC+TGG - chr5_1:67016481-67016500 Msa0745470:intron 45.0%
GCAAAACATATTACCAGGGC+AGG + chr5_1:67016497-67016516 None:intergenic 45.0%
! AGCAGTCTCCTCAGCATTTT+TGG - chr5_1:67016559-67016578 Msa0745470:intron 45.0%
TGACAGAACCAGCTACTACA+CGG + chr5_1:67016649-67016668 None:intergenic 45.0%
AAAAAGGAGGCAGAGCAAGT+TGG - chr5_1:67017064-67017083 Msa0745470:intron 45.0%
GGCAAGTGAAGCTAGTAAGT+CGG - chr5_1:67017109-67017128 Msa0745470:intron 45.0%
! GAGGAAGAAGCATGACAAAG+AGG - chr5_1:67017171-67017190 Msa0745470:intron 45.0%
AAGCATGACAAAGAGGGAGA+CGG - chr5_1:67017178-67017197 Msa0745470:intron 45.0%
TTCTGTTTCCATTCTGGCAG+TGG + chr5_1:67017227-67017246 None:intergenic 45.0%
GGATGAGTTGCTCTGATGTA+AGG + chr5_1:67017359-67017378 None:intergenic 45.0%
TTTACTGATGCGAGATGGCA+TGG - chr5_1:67017619-67017638 Msa0745470:intron 45.0%
AGACCAAGCTCTCGAATTCT+TGG - chr5_1:67017973-67017992 Msa0745470:intron 45.0%
GACCAAGCTCTCGAATTCTT+GGG - chr5_1:67017974-67017993 Msa0745470:intron 45.0%
TTCCCAAGAATTCGAGAGCT+TGG + chr5_1:67017979-67017998 None:intergenic 45.0%
! TCCTTGGTGGTTTCTACACA+AGG - chr5_1:67018149-67018168 Msa0745470:CDS 45.0%
TCCTTGTGTAGAAACCACCA+AGG + chr5_1:67018153-67018172 None:intergenic 45.0%
TAGGGTAAGGAACATAGACC+AGG + chr5_1:67018472-67018491 None:intergenic 45.0%
!!! CCCTCAAACGTTTTAGGGTA+AGG + chr5_1:67018485-67018504 None:intergenic 45.0%
TCGATGAAATCATGGACCTG+AGG - chr5_1:67018974-67018993 Msa0745470:intron 45.0%
! TCATGGACCTGAGGTTTTAC+AGG - chr5_1:67018983-67019002 Msa0745470:intron 45.0%
TTACAGGATGTTCTCTGCAC+AGG - chr5_1:67018999-67019018 Msa0745470:intron 45.0%
TAGAGATAAGCAGACCATCC+TGG - chr5_1:67019197-67019216 Msa0745470:CDS 45.0%
!!! TATTTATTATTTTTTTTGAA+AGG + chr5_1:67018698-67018717 None:intergenic 5.0%
ACATCAATGGCTGCTCGTCA+TGG - chr5_1:67015491-67015510 Msa0745470:three_prime_UTR 50.0%
TGATGTGCAGCCATAGCTAC+GGG + chr5_1:67015518-67015537 None:intergenic 50.0%
CCGCCAATGCATCTGTAAGA+AGG + chr5_1:67015571-67015590 None:intergenic 50.0%
! ACAGATGCATTGGCGGTATC+TGG - chr5_1:67015575-67015594 Msa0745470:three_prime_UTR 50.0%
ACAGTACACAAGGCAGGAGT+GGG + chr5_1:67015625-67015644 None:intergenic 50.0%
AACAGTACACAAGGCAGGAG+TGG + chr5_1:67015626-67015645 None:intergenic 50.0%
TGCCTGTCAGCAATCCAATC+TGG + chr5_1:67016151-67016170 None:intergenic 50.0%
CTGCTTGACTGCAATTCTGG+GGG - chr5_1:67016172-67016191 Msa0745470:intron 50.0%
!!! GCAATTCTGGGGGCATCTTT+TGG - chr5_1:67016182-67016201 Msa0745470:intron 50.0%
CCTGCAAGACTTCAATGTCC+TGG + chr5_1:67016229-67016248 None:intergenic 50.0%
CCAGGACATTGAAGTCTTGC+AGG - chr5_1:67016226-67016245 Msa0745470:intron 50.0%
GTCTTGCAGGTTGTCAGAAC+TGG - chr5_1:67016239-67016258 Msa0745470:intron 50.0%
GGTTGTCAGAACTGGAGTGT+TGG - chr5_1:67016247-67016266 Msa0745470:intron 50.0%
!! CCGATATGCTGCTTTCTCCA+TGG - chr5_1:67016440-67016459 Msa0745470:intron 50.0%
GCGAAGGCCAAAATGTGAAG+GGG + chr5_1:67016591-67016610 None:intergenic 50.0%
CGCGAAGGCCAAAATGTGAA+GGG + chr5_1:67016592-67016611 None:intergenic 50.0%
!! CCTTCACATTTTGGCCTTCG+CGG - chr5_1:67016590-67016609 Msa0745470:intron 50.0%
!! ATTTTGGCCTTCGCGGTGTA+TGG - chr5_1:67016597-67016616 Msa0745470:intron 50.0%
! GCTGGGATTGACTCTCTTCA+TGG - chr5_1:67016619-67016638 Msa0745470:CDS 50.0%
!! GTGTAGTAGCTGGTTCTGTC+AGG - chr5_1:67016648-67016667 Msa0745470:intron 50.0%
GGAACTACGTATCGCTGAAC+CGG + chr5_1:67016907-67016926 None:intergenic 50.0%
! TAGGCTAAGGAGCATACAGC+AGG + chr5_1:67018344-67018363 None:intergenic 50.0%
CCATATACGGGAACACTACC+AGG + chr5_1:67018734-67018753 None:intergenic 50.0%
! CCTGGTAGTGTTCCCGTATA+TGG - chr5_1:67018731-67018750 Msa0745470:intron 50.0%
TCGTCATGGTCCCGTAGCTA+TGG - chr5_1:67015505-67015524 Msa0745470:three_prime_UTR 55.0%
! TGCATTGGCGGTATCTGGTC+AGG - chr5_1:67015580-67015599 Msa0745470:three_prime_UTR 55.0%
AGTACACAAGGCAGGAGTGG+GGG + chr5_1:67015623-67015642 None:intergenic 55.0%
CAGTACACAAGGCAGGAGTG+GGG + chr5_1:67015624-67015643 None:intergenic 55.0%
CCGCGAAGGCCAAAATGTGA+AGG + chr5_1:67016593-67016612 None:intergenic 55.0%
ATGGCACTCCGTGTAGTAGC+TGG - chr5_1:67016638-67016657 Msa0745470:CDS 55.0%
CAAGGCAGGAGTGGGGGTTA+GGG + chr5_1:67015617-67015636 None:intergenic 60.0%
ACAAGGCAGGAGTGGGGGTT+AGG + chr5_1:67015618-67015637 None:intergenic 60.0%
ATCCCAGCCATACACCGCGA+AGG + chr5_1:67016607-67016626 None:intergenic 60.0%
AGGGAGACGGTGCTCTGTTC+TGG - chr5_1:67017191-67017210 Msa0745470:intron 60.0%
!! TGCTCTGTTCTGGTTCGCGC+TGG - chr5_1:67017201-67017220 Msa0745470:intron 60.0%
TGGCCTTCGCGGTGTATGGC+TGG - chr5_1:67016601-67016620 Msa0745470:intron 65.0%
GGCCTTCGCGGTGTATGGCT+GGG - chr5_1:67016602-67016621 Msa0745470:intron 65.0%
! CGCGCTGGCCACTGCCAGAA+TGG - chr5_1:67017216-67017235 Msa0745470:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 67015440 67019357 67015440 ID=Msa0745470;Name=Msa0745470
chr5_1 mRNA 67015440 67019357 67015440 ID=Msa0745470-mRNA-1;Parent=Msa0745470;Name=Msa0745470-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.71|0.75|0.87|0.71|0.75|8|316|265
chr5_1 exon 67015440 67015853 67015440 ID=Msa0745470-mRNA-1:exon:19912;Parent=Msa0745470-mRNA-1
chr5_1 exon 67016609 67016666 67016609 ID=Msa0745470-mRNA-1:exon:19911;Parent=Msa0745470-mRNA-1
chr5_1 exon 67017491 67017563 67017491 ID=Msa0745470-mRNA-1:exon:19910;Parent=Msa0745470-mRNA-1
chr5_1 exon 67018128 67018249 67018128 ID=Msa0745470-mRNA-1:exon:19909;Parent=Msa0745470-mRNA-1
chr5_1 exon 67018336 67018431 67018336 ID=Msa0745470-mRNA-1:exon:19908;Parent=Msa0745470-mRNA-1
chr5_1 exon 67018529 67018645 67018529 ID=Msa0745470-mRNA-1:exon:19907;Parent=Msa0745470-mRNA-1
chr5_1 exon 67018798 67018869 67018798 ID=Msa0745470-mRNA-1:exon:19906;Parent=Msa0745470-mRNA-1
chr5_1 exon 67019196 67019357 67019196 ID=Msa0745470-mRNA-1:exon:19905;Parent=Msa0745470-mRNA-1
chr5_1 CDS 67019196 67019357 67019196 ID=Msa0745470-mRNA-1:cds;Parent=Msa0745470-mRNA-1
chr5_1 CDS 67018798 67018869 67018798 ID=Msa0745470-mRNA-1:cds;Parent=Msa0745470-mRNA-1
chr5_1 CDS 67018529 67018645 67018529 ID=Msa0745470-mRNA-1:cds;Parent=Msa0745470-mRNA-1
chr5_1 CDS 67018336 67018431 67018336 ID=Msa0745470-mRNA-1:cds;Parent=Msa0745470-mRNA-1
chr5_1 CDS 67018128 67018249 67018128 ID=Msa0745470-mRNA-1:cds;Parent=Msa0745470-mRNA-1
chr5_1 CDS 67017491 67017563 67017491 ID=Msa0745470-mRNA-1:cds;Parent=Msa0745470-mRNA-1
chr5_1 CDS 67016609 67016666 67016609 ID=Msa0745470-mRNA-1:cds;Parent=Msa0745470-mRNA-1
chr5_1 CDS 67015756 67015853 67015756 ID=Msa0745470-mRNA-1:cds;Parent=Msa0745470-mRNA-1
chr5_1 three_prime_UTR 67015440 67015755 67015440 ID=Msa0745470-mRNA-1:three_prime_utr;Parent=Msa0745470-mRNA-1
Gene Sequence

>Msa0745470

GGTTTCGTTCTTGGAAGAACACTTGCTGTTCTTACAACCATGACATTGGGGACATCAATGGCTGCTCGTCATGGTCCCGTAGCTATGGCTGCACATCAAATATGCATGCAAGTGTGGTTAGCTGTTTCCCTTCTTACAGATGCATTGGCGGTATCTGGTCAGGCCCTAATTGCAAGTTCTCTATCAAGACATGAATACAAAGCTGTGAAGGAAATTACTCATTTTGTATTAAAGATTGGATTGCTGACAGGCATCTGCTTGACTGCAATTCTGGGGGCATCTTTTGGATCTTTAGCTACCCTTTTTACCCAGGACATTGAAGTCTTGCAGGTTGTCAGAACTGGAGTGTTGTTTGTCAGTGCTTCTCAACCTTTTAATGCACTGGCTTATATTTTTGATGGTCTCCATTATGGTGTTTCTGATTTCCGATATGCTGCTTTCTCCATGATGTTTGTGGGAGCAGTCTCCTCAGCATTTTTGGTATTTTCCCCTTCACATTTTGGCCTTCGCGGTGTATGGCTGGGATTGACTCTCTTCATGGCACTCCGTGTAGTAGCTGGTTCTGTCAGAATGGAAACAGAAACAATGCTCTGTGCTGTTTCTTATGGCGTATCGCTTTCTCTTTTGATACGTAATTTGATCATTACTATCAAAGAATGGTCCTTGGTGGTTTCTACACAAGGATTTTCAGATTGCAGAGATGGGTTCTTAATTATTAAGATGAAGAATATCGATGAAATCATGGACCTGAGGTTTTACAGGATGTTCTCTGCACAGGATACAGTATTTAGATGTTAA

Protein sequence

>Msa0745470

GFVLGRTLAVLTTMTLGTSMAARHGPVAMAAHQICMQVWLAVSLLTDALAVSGQALIASSLSRHEYKAVKEITHFVLKIGLLTGICLTAILGASFGSLATLFTQDIEVLQVVRTGVLFVSASQPFNALAYIFDGLHYGVSDFRYAAFSMMFVGAVSSAFLVFSPSHFGLRGVWLGLTLFMALRVVAGSVRMETETMLCAVSYGVSLSLLIRNLIITIKEWSLVVSTQGFSDCRDGFLIIKMKNIDEIMDLRFYRMFSAQDTVFRC*