AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0650500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650500 MtrunA17_Chr4g0042481 95.075 467 21 1 1 467 1 465 0.0 894
Msa0650500 MtrunA17_Chr6g0453321 44.071 506 229 18 1 465 1 493 7.15e-115 347
Msa0650500 MtrunA17_Chr7g0217581 43.461 497 236 16 1 465 98 581 8.66e-106 326
Msa0650500 MtrunA17_Chr3g0092111 43.838 495 216 20 1 465 1 463 7.65e-105 320
Msa0650500 MtrunA17_Chr5g0417601 41.237 485 151 17 6 465 4 379 8.84e-87 270
Msa0650500 MtrunA17_Chr5g0417551 38.320 488 151 17 6 465 4 369 1.99e-73 236
Msa0650500 MtrunA17_Chr5g0417561 36.605 489 152 18 6 466 4 362 6.46e-71 229
Msa0650500 MtrunA17_Chr8g0355261 33.537 492 231 19 5 465 11 437 3.76e-62 208
Msa0650500 MtrunA17_Chr7g0254161 32.787 488 237 17 1 465 3 422 4.12e-59 200
Msa0650500 MtrunA17_Chr5g0417571 49.528 212 70 8 4 185 2 206 1.70e-50 174
Msa0650500 MtrunA17_Chr6g0460731 34.056 323 142 11 4 306 9 280 1.32e-42 154
Msa0650500 MtrunA17_Chr6g0460721 46.857 175 76 4 85 243 51 224 8.10e-42 151
Msa0650500 MtrunA17_Chr2g0283811 86.667 60 8 0 116 175 41 100 9.20e-34 124
Msa0650500 MtrunA17_Chr3g0127201 61.765 68 26 0 108 175 13 80 8.85e-26 106
Msa0650500 MtrunA17_Chr8g0346551 65.625 64 22 0 117 180 19 82 2.23e-25 105
Msa0650500 MtrunA17_Chr8g0367161 52.381 84 40 0 97 180 7 90 4.20e-25 105
Msa0650500 MtrunA17_Chr8g0374111 63.934 61 22 0 122 182 29 89 1.01e-24 102
Msa0650500 MtrunA17_Chr2g0326001 64.615 65 23 0 111 175 29 93 2.09e-24 102
Msa0650500 MtrunA17_Chr8g0374251 66.102 59 20 0 122 180 68 126 2.74e-24 103
Msa0650500 MtrunA17_Chr4g0010151 67.241 58 19 0 118 175 78 135 3.10e-24 103
Msa0650500 MtrunA17_Chr1g0188851 57.971 69 29 0 106 174 27 95 7.39e-24 101
Msa0650500 MtrunA17_Chr4g0047001 74.074 54 14 0 124 177 57 110 1.19e-23 102
Msa0650500 MtrunA17_Chr2g0308011 73.469 49 13 0 122 170 37 85 2.83e-23 97.4
Msa0650500 MtrunA17_Chr1g0177251 53.333 90 40 2 117 204 6 95 4.32e-23 99.0
Msa0650500 MtrunA17_Chr4g0031411 58.571 70 26 1 108 174 58 127 4.40e-23 99.8
Msa0650500 MtrunA17_Chr2g0328021 68.519 54 17 0 122 175 62 115 5.14e-23 98.6
Msa0650500 MtrunA17_Chr4g0061761 67.925 53 17 0 120 172 38 90 5.55e-23 99.4
Msa0650500 MtrunA17_Chr8g0341671 62.903 62 23 0 122 183 20 81 6.58e-23 96.7
Msa0650500 MtrunA17_Chr4g0030051 56.000 75 29 1 104 174 19 93 2.56e-22 96.7
Msa0650500 MtrunA17_Chr7g0237921 71.154 52 15 0 124 175 78 129 2.72e-22 97.8
Msa0650500 MtrunA17_Chr7g0223311 72.549 51 14 0 124 174 79 129 6.54e-22 97.1
Msa0650500 MtrunA17_Chr2g0282051 67.857 56 17 1 122 177 46 100 7.34e-22 95.1
Msa0650500 MtrunA17_Chr3g0126201 59.155 71 27 2 107 175 34 104 7.87e-22 96.3
Msa0650500 MtrunA17_Chr4g0047761 70.370 54 15 1 124 177 74 126 1.37e-21 95.1
Msa0650500 MtrunA17_Chr5g0411951 63.636 55 20 0 118 172 39 93 1.47e-21 95.5
Msa0650500 MtrunA17_Chr2g0282511 71.429 49 14 0 122 170 45 93 1.53e-21 95.1
Msa0650500 MtrunA17_Chr3g0117601 61.290 62 23 1 112 172 50 111 2.61e-21 94.7
Msa0650500 MtrunA17_Chr2g0282441 70.000 50 15 0 124 173 27 76 2.87e-21 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650500 AT3G47500.1 40.408 490 224 17 1 466 2 447 7.07e-85 268
Msa0650500 AT5G39660.3 37.403 516 208 17 4 465 1 455 2.69e-80 256
Msa0650500 AT5G39660.1 37.403 516 208 17 4 465 1 455 2.69e-80 256
Msa0650500 AT5G39660.2 37.403 516 208 17 4 465 1 455 2.69e-80 256
Msa0650500 AT5G62430.1 41.361 382 111 15 89 466 25 297 1.45e-64 211
Msa0650500 AT1G69570.1 32.985 479 223 17 1 465 1 395 5.80e-48 170
Msa0650500 AT1G26790.1 32.265 468 210 17 1 465 7 370 3.71e-47 167
Msa0650500 AT1G29160.1 88.333 60 7 0 116 175 56 115 2.44e-35 129
Msa0650500 AT2G34140.1 52.727 110 52 0 66 175 2 111 4.80e-34 126
Msa0650500 AT5G60200.1 37.931 174 99 4 118 288 51 218 2.66e-27 110
Msa0650500 AT4G24060.1 61.538 65 25 0 111 175 42 106 2.66e-24 103
Msa0650500 AT1G51700.1 53.086 81 31 1 100 180 18 91 2.71e-24 100
Msa0650500 AT3G55370.1 43.243 111 49 2 118 217 72 179 3.86e-24 103
Msa0650500 AT3G55370.2 43.243 111 49 2 118 217 72 179 4.56e-24 103
Msa0650500 AT5G60850.1 72.222 54 15 0 122 175 51 104 4.76e-24 102
Msa0650500 AT2G28810.2 46.078 102 49 2 78 173 27 128 5.06e-24 102
Msa0650500 AT3G55370.3 67.241 58 19 0 118 175 117 174 5.85e-24 103
Msa0650500 AT3G50410.1 68.421 57 18 0 122 178 30 86 6.76e-24 100
Msa0650500 AT2G28810.1 46.078 102 49 2 78 173 44 145 7.32e-24 102
Msa0650500 AT1G21340.1 48.936 94 37 3 124 216 40 123 9.39e-24 100
Msa0650500 AT2G37590.1 57.576 66 28 0 110 175 77 142 1.20e-23 101
Msa0650500 AT1G64620.1 55.128 78 34 1 93 170 21 97 1.52e-23 102
Msa0650500 AT3G61850.2 60.938 64 25 0 112 175 52 115 1.83e-23 100
Msa0650500 AT3G61850.3 60.938 64 25 0 112 175 52 115 1.83e-23 100
Msa0650500 AT3G61850.1 58.824 68 28 0 112 179 64 131 2.22e-23 100
Msa0650500 AT3G61850.5 60.938 64 25 0 112 175 52 115 3.15e-23 100
Msa0650500 AT3G61850.4 58.824 68 28 0 112 179 64 131 3.59e-23 100
Msa0650500 AT3G21270.1 71.698 53 15 0 122 174 29 81 3.94e-23 97.4
Msa0650500 AT2G28510.1 67.797 59 19 0 124 182 50 108 6.96e-23 98.6
Msa0650500 AT1G07640.1 69.811 53 16 0 122 174 21 73 7.96e-23 98.2
Msa0650500 AT3G45610.1 57.143 63 27 0 118 180 36 98 8.58e-23 97.4
Msa0650500 AT1G28310.1 70.370 54 16 0 122 175 27 80 9.50e-23 99.0
Msa0650500 AT1G07640.2 69.811 53 16 0 122 174 77 129 1.30e-22 99.0
Msa0650500 AT1G28310.2 47.475 99 43 2 79 175 13 104 1.55e-22 98.6
Msa0650500 AT1G07640.3 69.811 53 16 0 122 174 85 137 1.65e-22 98.6
Msa0650500 AT5G02460.1 57.746 71 27 1 108 175 78 148 1.86e-22 99.4
Msa0650500 AT5G66940.1 60.000 60 24 0 122 181 32 91 2.47e-22 95.5
Msa0650500 AT5G65590.1 54.930 71 32 0 105 175 24 94 3.36e-22 97.4
Msa0650500 AT4G00940.1 56.757 74 27 1 109 177 50 123 4.54e-22 96.7
Msa0650500 AT4G00940.3 56.757 74 27 1 109 177 50 123 4.54e-22 96.7
Msa0650500 AT4G00940.2 56.757 74 27 1 109 177 50 123 4.54e-22 96.7
Msa0650500 AT1G47655.1 71.429 49 14 0 122 170 29 77 7.53e-22 94.0
Msa0650500 AT3G52440.2 48.936 94 40 3 93 180 11 102 9.83e-22 95.1
Msa0650500 AT4G38000.1 62.500 56 20 1 121 176 40 94 2.77e-21 93.2
Msa0650500 AT3G52440.1 64.912 57 20 0 124 180 27 83 2.91e-21 93.2
Msa0650500 AT2G46590.1 60.656 61 22 1 109 169 57 115 3.50e-21 95.1
Msa0650500 AT2G46590.2 60.656 61 22 1 109 169 69 127 3.76e-21 95.1
Msa0650500 AT4G21050.1 43.564 101 55 1 115 213 17 117 6.50e-21 91.3
Msa0650500 AT5G62940.1 69.388 49 15 0 124 172 75 123 9.90e-20 90.9
Msa0650500 AT4G21040.1 47.297 74 37 1 102 175 7 78 1.15e-17 82.4
Msa0650500 AT4G21080.1 57.692 52 22 0 124 175 27 78 1.55e-16 79.7
Msa0650500 AT4G21030.1 59.091 44 18 0 124 167 23 66 4.09e-11 62.8

Find 141 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGTTCTGTCCCGACTTT+GGG 0.197222 4_3:-57570143 Msa0650500:CDS
CCCTAATGGATTACATAGTT+TGG 0.197772 4_3:-57570618 Msa0650500:CDS
TTTCAATGCAATTCACAATT+AGG 0.220175 4_3:+57569803 None:intergenic
GTAATTAGTTCTTTCCTTGA+TGG 0.235655 4_3:+57571058 None:intergenic
CCAAACTATGTAATCCATTA+GGG 0.240822 4_3:+57570618 None:intergenic
AGTAACTCCACCTGCATATT+GGG 0.244547 4_3:-57570240 Msa0650500:CDS
TCATCAAATCTAAGTGTCTT+TGG 0.276528 4_3:+57570023 None:intergenic
CAATATGCAGGTGGAGTTAC+TGG 0.285499 4_3:+57570242 None:intergenic
TTTGAGACTAACATTATTGT+AGG 0.298707 4_3:+57569422 None:intergenic
GTAAGAAATGTCAAAGATAC+TGG 0.307217 4_3:-57570757 Msa0650500:CDS
ATTGTTGAAGTAACAAAATT+TGG 0.309323 4_3:+57570808 None:intergenic
CCCAAACTATGTAATCCATT+AGG 0.311917 4_3:+57570617 None:intergenic
ATTCCATGGATAAGGCAAAA+AGG 0.312423 4_3:+57570322 None:intergenic
CAGTAACTCCACCTGCATAT+TGG 0.313645 4_3:-57570241 Msa0650500:CDS
GCTAAACTTAATTCCCCTAA+TGG 0.325757 4_3:-57570632 Msa0650500:CDS
ACAATAATGTTAGTCTTCAT+TGG 0.332215 4_3:-57569483 Msa0650500:three_prime_UTR
GCCTCCTCCATTGAGAGAAT+TGG 0.332869 4_3:+57569941 None:intergenic
CCTAATGGATTACATAGTTT+GGG 0.335592 4_3:-57570617 Msa0650500:CDS
TAGAATGCTAATGGATAGTT+TGG 0.337503 4_3:+57570269 None:intergenic
GTTTCAGCTGATGGAGTCTT+AGG 0.353075 4_3:+57570953 None:intergenic
TAGGACTCTTGCATGGAGTT+TGG 0.359745 4_3:+57569677 None:intergenic
AAGAACTTGTCAGCAGAATA+AGG 0.366367 4_3:+57569734 None:intergenic
ATCATGCAAGTTCGTATAGT+AGG 0.370122 4_3:-57570484 Msa0650500:CDS
TCTCAGTTCTGTCCCGACTT+TGG 0.371870 4_3:-57570144 Msa0650500:CDS
AAAGGCCACACCGGCACAAA+TGG 0.375943 4_3:-57570401 Msa0650500:CDS
GACCCTGCGATAAAGCTCTT+TGG 0.376470 4_3:-57572320 Msa0650500:CDS
GGGGATATTATATAGTTTGA+TGG 0.384459 4_3:+57572502 None:intergenic
ACAAATGGGTTGGTAGATAA+AGG 0.391250 4_3:-57570386 Msa0650500:CDS
AGGGAAAATGATCACTCAAT+TGG 0.410885 4_3:-57570464 Msa0650500:CDS
CATCAAATCTAAGTGTCTTT+GGG 0.411049 4_3:+57570024 None:intergenic
TGATTAACAGAAGCACTTCC+TGG 0.414702 4_3:+57570179 None:intergenic
GAACTCCTTGCAGCTTCACT+TGG 0.415659 4_3:+57569999 None:intergenic
AGAGGGAGATGAAGAGTCAT+TGG 0.419013 4_3:+57572262 None:intergenic
AGATTTCAATAACGAATTCT+CGG 0.425048 4_3:+57570931 None:intergenic
TTGGTAGATAAAGGAGTTGA+AGG 0.425049 4_3:-57570377 Msa0650500:CDS
GGATTACATAGTTTGGGAAA+TGG 0.427090 4_3:-57570611 Msa0650500:CDS
ACTCAAAATTGTGTGTCAAA+TGG 0.434475 4_3:-57570512 Msa0650500:CDS
CAGATTTGATAATATGTTGT+TGG 0.444254 4_3:-57569573 Msa0650500:three_prime_UTR
TGTATTGCAGAGGTGAATTC+TGG 0.445396 4_3:+57572230 None:intergenic
TTGAGCCTGCCTAACTGAAC+AGG 0.455235 4_3:-57569607 Msa0650500:three_prime_UTR
AGTTCATTGTGGTCAAAGCT+TGG 0.456620 4_3:-57569981 Msa0650500:CDS
TTGAGTGTTTCCCCAAAGTC+GGG 0.458025 4_3:+57570132 None:intergenic
ACTGGAGTATAGAATGCTAA+TGG 0.468260 4_3:+57570260 None:intergenic
TGATCTTTATTATTCTCAAA+AGG 0.468272 4_3:-57569712 Msa0650500:three_prime_UTR
GTGATTCATGTCCTTTACCT+TGG 0.468280 4_3:+57569899 None:intergenic
GTTCATTGTGGTCAAAGCTT+GGG 0.469560 4_3:-57569980 Msa0650500:CDS
GACAAAGCCAATTCTCTCAA+TGG 0.470994 4_3:-57569948 Msa0650500:CDS
TGGATAGTTTGGTGGACAAA+AGG 0.471372 4_3:+57570280 None:intergenic
GGAGATGAAGAGTCATTGGC+AGG 0.477484 4_3:+57572266 None:intergenic
AATGGAGGAGGCATGTTCAA+TGG 0.477902 4_3:-57569930 Msa0650500:CDS
GAATTCTCGGTTTCAGCTGA+TGG 0.478162 4_3:+57570944 None:intergenic
ATGCTATTGCATCGCGGGCA+TGG 0.486276 4_3:+57570836 None:intergenic
GAATTCTGGTGGAGAAGAAG+AGG 0.486452 4_3:+57572244 None:intergenic
ATTGCAGAATTCCATGGATA+AGG 0.486834 4_3:+57570314 None:intergenic
AAACTCCATGCAAGAGTCCT+AGG 0.487050 4_3:-57569675 Msa0650500:three_prime_UTR
GAATTAAGTTTAGCACCCTC+TGG 0.491397 4_3:+57570641 None:intergenic
AGATTTGATAATATGTTGTT+GGG 0.494242 4_3:-57569572 Msa0650500:three_prime_UTR
TTGCGGCGACCAGCTCCAAC+AGG 0.495368 4_3:+57570707 None:intergenic
AAGTACAACACTGTTGTCCT+AGG 0.502288 4_3:+57569658 None:intergenic
CCGCGATAAAGCCGCAGGGT+TGG 0.504467 4_3:+57569848 None:intergenic
AATGATCACTCAATTGGAGT+TGG 0.507132 4_3:-57570458 Msa0650500:CDS
AACTCCTTGCAGCTTCACTT+GGG 0.509294 4_3:+57570000 None:intergenic
TCAAATTCATCAGATAGAAA+AGG 0.510956 4_3:-57570419 Msa0650500:CDS
AAGGCCACACCGGCACAAAT+GGG 0.516822 4_3:-57570400 Msa0650500:CDS
GGCATACAACCCCAATATGC+AGG 0.516977 4_3:+57570230 None:intergenic
AAACACCTGTTCAGTTAGGC+AGG 0.517381 4_3:+57569602 None:intergenic
TGGATTTCAGTCCAAGGTAA+AGG 0.518064 4_3:-57569910 Msa0650500:CDS
CAATTAGGTTTCCTCATGGA+AGG 0.522646 4_3:+57569818 None:intergenic
CTTGAGTGTTTCCCCAAAGT+CGG 0.525777 4_3:+57570131 None:intergenic
TGTCAAAGATACTGGACTGC+AGG 0.528621 4_3:-57570749 Msa0650500:CDS
ATCTACCAACCCATTTGTGC+CGG 0.532135 4_3:+57570391 None:intergenic
TGTCCATGCTATTGCATCGC+GGG 0.535971 4_3:+57570831 None:intergenic
CGAGACCGCGATAAAGCCGC+AGG 0.536771 4_3:+57569843 None:intergenic
TTTACCTCTGACATTTCTGT+AGG 0.537948 4_3:+57572344 None:intergenic
CGACTTTGGGGAAACACTCA+AGG 0.540052 4_3:-57570130 Msa0650500:CDS
TCATGCAAGTTCGTATAGTA+GGG 0.541345 4_3:-57570483 Msa0650500:CDS
TTCACAATTAGGTTTCCTCA+TGG 0.553418 4_3:+57569814 None:intergenic
ATCCTCAGTGGTTTGTTGCG+AGG 0.554021 4_3:+57571018 None:intergenic
AATGCTAATGGATAGTTTGG+TGG 0.554354 4_3:+57570272 None:intergenic
GAGACACATGGTATATTCCA+TGG 0.554398 4_3:+57570203 None:intergenic
GCAGAAACACCTGTTCAGTT+AGG 0.556152 4_3:+57569598 None:intergenic
CTTCCAAAGAGCTTTATCGC+AGG 0.556819 4_3:+57572317 None:intergenic
ACAATGAGAAATGTTCCTGT+TGG 0.557862 4_3:-57570722 Msa0650500:CDS
TCAGCTGATGGAGTCTTAGG+AGG 0.562404 4_3:+57570956 None:intergenic
TAGTTTGGTGGACAAAAGGT+AGG 0.562573 4_3:+57570284 None:intergenic
AATTCTGGTGGAGAAGAAGA+GGG 0.562827 4_3:+57572245 None:intergenic
GCCAATTCTCTCAATGGAGG+AGG 0.563194 4_3:-57569942 Msa0650500:CDS
TTCCAAAGAGCTTTATCGCA+GGG 0.567023 4_3:+57572318 None:intergenic
GAATATGTTGCAACTGAGGA+GGG 0.570048 4_3:+57570351 None:intergenic
GGAGGCATTGCAGAATTCCA+TGG 0.572249 4_3:+57570308 None:intergenic
TTTGGTGGACAAAAGGTAGG+AGG 0.574664 4_3:+57570287 None:intergenic
GGAATATGTTGCAACTGAGG+AGG 0.574863 4_3:+57570350 None:intergenic
TGAGTGAAAATATTATGAGA+TGG 0.574965 4_3:+57572402 None:intergenic
AGAAATGTTCCTGTTGGAGC+TGG 0.575931 4_3:-57570716 Msa0650500:CDS
CTTGGAATATGTTGCAACTG+AGG 0.581444 4_3:+57570347 None:intergenic
TTGGGGAAACACTCAAGGGA+TGG 0.586619 4_3:-57570125 Msa0650500:CDS
GGGGTTGTATGCCACCTCCA+TGG 0.588317 4_3:-57570220 Msa0650500:CDS
CATGGTATATTCCATGGAGG+TGG 0.595774 4_3:+57570209 None:intergenic
GTTGTCCTAGGACTCTTGCA+TGG 0.602070 4_3:+57569670 None:intergenic
GGTGGACAAAAGGTAGGAGG+AGG 0.603448 4_3:+57570290 None:intergenic
CCAACCCATTTGTGCCGGTG+TGG 0.605033 4_3:+57570396 None:intergenic
CGACATTTGATAATTCCAGA+GGG 0.606272 4_3:-57570656 Msa0650500:CDS
TCAGTTCTGTCCCGACTTTG+GGG 0.606745 4_3:-57570142 Msa0650500:CDS
CCACACCGGCACAAATGGGT+TGG 0.611096 4_3:-57570396 Msa0650500:CDS
GTAACTCCACCTGCATATTG+GGG 0.611433 4_3:-57570239 Msa0650500:CDS
CAAAGATACTGGACTGCAGG+AGG 0.611856 4_3:-57570746 Msa0650500:CDS
GTTCAATGGATTTCAGTCCA+AGG 0.615097 4_3:-57569916 Msa0650500:CDS
CTGCGATAAAGCTCTTTGGA+AGG 0.619750 4_3:-57572316 Msa0650500:CDS
AATATACCATGTGTCTCACC+AGG 0.620306 4_3:-57570197 Msa0650500:CDS
GATGTTCAATACAGAAGCCA+TGG 0.623380 4_3:+57570544 None:intergenic
GAGATGAAGAGTCATTGGCA+GGG 0.625244 4_3:+57572267 None:intergenic
TCGACATTTGATAATTCCAG+AGG 0.625580 4_3:-57570657 Msa0650500:CDS
TCATTGGCAGGGATGATCAG+TGG 0.630276 4_3:+57572278 None:intergenic
GCACTTCCTGGTGAGACACA+TGG 0.630353 4_3:+57570191 None:intergenic
AGTTTCATGCTGTATTGCAG+AGG 0.631365 4_3:+57572220 None:intergenic
GACTTTGGGGAAACACTCAA+GGG 0.631484 4_3:-57570129 Msa0650500:CDS
ATGACCCAAGTGAAGCTGCA+AGG 0.632038 4_3:-57570004 Msa0650500:CDS
GTGTCCATGCTATTGCATCG+CGG 0.634519 4_3:+57570830 None:intergenic
ATGCCCGCGATGCAATAGCA+TGG 0.635421 4_3:-57570834 Msa0650500:CDS
CCAACCCTGCGGCTTTATCG+CGG 0.637960 4_3:-57569848 Msa0650500:CDS
GGGATGATCAGTGGAAGAAG+CGG 0.640321 4_3:+57572287 None:intergenic
GAGAGCTCTTAAATCCTCAG+TGG 0.645204 4_3:+57571006 None:intergenic
GCAGGGTTGGCATACATCAG+CGG 0.645757 4_3:+57569861 None:intergenic
GCTCAAGATAGCAGCTACTG+AGG 0.646149 4_3:+57569624 None:intergenic
CAAACTATGTAATCCATTAG+GGG 0.651674 4_3:+57570619 None:intergenic
TCAGATAGAAAAGGCCACAC+CGG 0.654081 4_3:-57570410 Msa0650500:CDS
CTAATTACAGCACAAGACGA+TGG 0.658149 4_3:-57571043 Msa0650500:CDS
AAAGCCAATTCTCTCAATGG+AGG 0.662101 4_3:-57569945 Msa0650500:CDS
TGCAATACAGCATGAAACTG+AGG 0.664237 4_3:-57572216 Msa0650500:intron
GCCATGGTGTTACAAAGCGG+AGG 0.666467 4_3:+57570560 None:intergenic
ATTGCAGAGGTGAATTCTGG+TGG 0.675104 4_3:+57572233 None:intergenic
TCCTCCGCTTTGTAACACCA+TGG 0.687107 4_3:-57570561 Msa0650500:CDS
AAGCTGCAAGGAGTTCATTG+TGG 0.697169 4_3:-57569992 Msa0650500:CDS
GGTAAAGGACATGAATCACA+CGG 0.721107 4_3:-57569895 Msa0650500:CDS
ATACAACCCCAATATGCAGG+TGG 0.724114 4_3:+57570233 None:intergenic
GAAGCCATGGTGTTACAAAG+CGG 0.731105 4_3:+57570557 None:intergenic
GAGACCGCGATAAAGCCGCA+GGG 0.731318 4_3:+57569844 None:intergenic
GCGGTCTCGTACCTTCCATG+AGG 0.732623 4_3:-57569829 Msa0650500:CDS
ACACATGGTATATTCCATGG+AGG 0.757531 4_3:+57570206 None:intergenic
GCTGATGTATGCCAACCCTG+CGG 0.770728 4_3:-57569859 Msa0650500:CDS
AGCCTCGCAACAAACCACTG+AGG 0.809905 4_3:-57571020 Msa0650500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGTATAAAAAAAAAAAG+GGG + chr4_3:57569476-57569495 None:intergenic 10.0%
!! ATTTATATAAAAATTGTTCA+TGG - chr4_3:57570387-57570406 Msa0650500:CDS 10.0%
!!! CAATTATCAATTTTTTGTTT+TGG - chr4_3:57570138-57570157 Msa0650500:CDS 15.0%
!! TATATAAAAATAGCAGAAAA+GGG + chr4_3:57570625-57570644 None:intergenic 15.0%
!! TTATATAAAAATAGCAGAAA+AGG + chr4_3:57570626-57570645 None:intergenic 15.0%
!!! TTAATCATATTCATTGTTTT+AGG - chr4_3:57570873-57570892 Msa0650500:CDS 15.0%
!! ATTAACTGCTTAAGAAAAAT+GGG + chr4_3:57569853-57569872 None:intergenic 20.0%
!! AATTAACTGCTTAAGAAAAA+TGG + chr4_3:57569854-57569873 None:intergenic 20.0%
!! TTAAGCAGTTAATTGTTAAT+GGG - chr4_3:57569860-57569879 Msa0650500:CDS 20.0%
!!! TTGAATCTTTTATTAAGTTG+TGG - chr4_3:57569996-57570015 Msa0650500:CDS 20.0%
!! TAAAACTAATCTATGGTATT+TGG + chr4_3:57570436-57570455 None:intergenic 20.0%
!!! AATACCATAGATTAGTTTTA+TGG - chr4_3:57570436-57570455 Msa0650500:CDS 20.0%
!!! TTTGTTTTTTACTTCTATTG+AGG - chr4_3:57570789-57570808 Msa0650500:CDS 20.0%
!! ATTGTTGAAGTAACAAAATT+TGG + chr4_3:57571151-57571170 None:intergenic 20.0%
!! TGATCTTTATTATTCTCAAA+AGG - chr4_3:57572244-57572263 Msa0650500:CDS 20.0%
!!! AGATTTGATAATATGTTGTT+GGG - chr4_3:57572384-57572403 Msa0650500:five_prime_UTR 20.0%
! TGAGTGAAAATATTATGAGA+TGG + chr4_3:57569557-57569576 None:intergenic 25.0%
! CTTAAGCAGTTAATTGTTAA+TGG - chr4_3:57569859-57569878 Msa0650500:CDS 25.0%
!! TTTTGATGTCAATTGAATTG+AGG - chr4_3:57569900-57569919 Msa0650500:CDS 25.0%
! AAATTGGATCGAATTTATTC+TGG - chr4_3:57570049-57570068 Msa0650500:CDS 25.0%
! TAACCAAAAAACTTCAATCA+AGG + chr4_3:57570237-57570256 None:intergenic 25.0%
!! CAAAATAGTTTAGTTCAAGT+CGG + chr4_3:57570269-57570288 None:intergenic 25.0%
!!! TTTATGGACTGTTAGTTTTT+AGG - chr4_3:57570452-57570471 Msa0650500:CDS 25.0%
!!! CTGCATATAATTTTAGTATG+AGG + chr4_3:57570661-57570680 None:intergenic 25.0%
! AGATTTCAATAACGAATTCT+CGG + chr4_3:57571028-57571047 None:intergenic 25.0%
!!! TTTCTTCAGAGTTTTTTCTT+CGG + chr4_3:57571085-57571104 None:intergenic 25.0%
! ACATTTCTTACAAAAATGAC+GGG + chr4_3:57571190-57571209 None:intergenic 25.0%
! GACATTTCTTACAAAAATGA+CGG + chr4_3:57571191-57571210 None:intergenic 25.0%
!! TAGATAAGTTTTTGTTCTTG+CGG + chr4_3:57571269-57571288 None:intergenic 25.0%
! TCAAATTCATCAGATAGAAA+AGG - chr4_3:57571537-57571556 Msa0650500:intron 25.0%
! TTTCAATGCAATTCACAATT+AGG + chr4_3:57572156-57572175 None:intergenic 25.0%
!! CAGATTTGATAATATGTTGT+TGG - chr4_3:57572383-57572402 Msa0650500:five_prime_UTR 25.0%
!!! ACAATAATGTTAGTCTTCAT+TGG - chr4_3:57572473-57572492 Msa0650500:five_prime_UTR 25.0%
! AAAAAAGGTAACAAAACAAC+AGG + chr4_3:57572502-57572521 None:intergenic 25.0%
GGGGATATTATATAGTTTGA+TGG + chr4_3:57569457-57569476 None:intergenic 30.0%
TCAATCATATGAAACCTTCA+TGG + chr4_3:57569772-57569791 None:intergenic 30.0%
GAAAAAACCAAAGCAAAACA+AGG + chr4_3:57570119-57570138 None:intergenic 30.0%
!!! TTGCCTTGATTGAAGTTTTT+TGG - chr4_3:57570231-57570250 Msa0650500:CDS 30.0%
! CGACTTGAACTAAACTATTT+TGG - chr4_3:57570267-57570286 Msa0650500:CDS 30.0%
!!! TGTTATTTTGACACAGAACA+AGG + chr4_3:57570320-57570339 None:intergenic 30.0%
AATTATGTTGTGATGTCACA+AGG + chr4_3:57570367-57570386 None:intergenic 30.0%
ATTGTTCATGGACATATTAC+TGG - chr4_3:57570399-57570418 Msa0650500:CDS 30.0%
CAGTCCATAAAACTAATCTA+TGG + chr4_3:57570443-57570462 None:intergenic 30.0%
! AATTTTAAGCGCAAAGTGAA+AGG + chr4_3:57570528-57570547 None:intergenic 30.0%
TCTATGAGAATCCATATATG+AGG - chr4_3:57570548-57570567 Msa0650500:CDS 30.0%
GCATACGTGTATAAAAACAT+TGG + chr4_3:57570720-57570739 None:intergenic 30.0%
GCATACGTGTATAAAAACAT+TGG + chr4_3:57570720-57570739 None:intergenic 30.0%
!! TGTTTTTATACACGTATGCT+CGG - chr4_3:57570748-57570767 Msa0650500:CDS 30.0%
AACTTACTGTGTACACAAAA+GGG + chr4_3:57570840-57570859 None:intergenic 30.0%
TAACTTACTGTGTACACAAA+AGG + chr4_3:57570841-57570860 None:intergenic 30.0%
! GTAATTAGTTCTTTCCTTGA+TGG + chr4_3:57570901-57570920 None:intergenic 30.0%
CATTTCTTACAAAAATGACG+GGG + chr4_3:57571189-57571208 None:intergenic 30.0%
GTAAGAAATGTCAAAGATAC+TGG - chr4_3:57571199-57571218 Msa0650500:intron 30.0%
CAAACTATGTAATCCATTAG+GGG + chr4_3:57571340-57571359 None:intergenic 30.0%
CCAAACTATGTAATCCATTA+GGG + chr4_3:57571341-57571360 None:intergenic 30.0%
!! CCTAATGGATTACATAGTTT+GGG - chr4_3:57571339-57571358 Msa0650500:intron 30.0%
ACTCAAAATTGTGTGTCAAA+TGG - chr4_3:57571444-57571463 Msa0650500:intron 30.0%
! TAGAATGCTAATGGATAGTT+TGG + chr4_3:57571690-57571709 None:intergenic 30.0%
!! TCATTTTCAGGCTTTTCTTT+TGG + chr4_3:57571882-57571901 None:intergenic 30.0%
CATCAAATCTAAGTGTCTTT+GGG + chr4_3:57571935-57571954 None:intergenic 30.0%
TCATCAAATCTAAGTGTCTT+TGG + chr4_3:57571936-57571955 None:intergenic 30.0%
AGGAGAGAATCTTCAAAAAA+AGG + chr4_3:57572517-57572536 None:intergenic 30.0%
!!! TGTGTGTGACTCAGTTTTTT+AGG + chr4_3:57569586-57569605 None:intergenic 35.0%
! TTTTCCTACAGAAATGTCAG+AGG - chr4_3:57569608-57569627 Msa0650500:three_prime_UTR 35.0%
TTTACCTCTGACATTTCTGT+AGG + chr4_3:57569615-57569634 None:intergenic 35.0%
ACTGCTTAAGAAAAATGGGT+TGG + chr4_3:57569849-57569868 None:intergenic 35.0%
GGAATTGCTGAAATTCTCAA+TGG - chr4_3:57569921-57569940 Msa0650500:CDS 35.0%
TGTGGCTCAAATTCATTATG+TGG - chr4_3:57570014-57570033 Msa0650500:CDS 35.0%
TTCGATCCAATTTCACTGAT+GGG + chr4_3:57570042-57570061 None:intergenic 35.0%
ATTCGATCCAATTTCACTGA+TGG + chr4_3:57570043-57570062 None:intergenic 35.0%
!!! TGGTTTACCTTGTTTTGCTT+TGG - chr4_3:57570109-57570128 Msa0650500:CDS 35.0%
ACAGAACAAGGACATGAATA+TGG + chr4_3:57570308-57570327 None:intergenic 35.0%
TATTGTAGGAGACAAGAGTA+AGG + chr4_3:57570478-57570497 None:intergenic 35.0%
!!! CATTGTTTTAGGAACCATCA+AGG - chr4_3:57570884-57570903 Msa0650500:CDS 35.0%
ACAATGAGAAATGTTCCTGT+TGG - chr4_3:57571234-57571253 Msa0650500:intron 35.0%
! TCGACATTTGATAATTCCAG+AGG - chr4_3:57571299-57571318 Msa0650500:intron 35.0%
! CGACATTTGATAATTCCAGA+GGG - chr4_3:57571300-57571319 Msa0650500:intron 35.0%
GCTAAACTTAATTCCCCTAA+TGG - chr4_3:57571324-57571343 Msa0650500:intron 35.0%
!! CCCTAATGGATTACATAGTT+TGG - chr4_3:57571338-57571357 Msa0650500:intron 35.0%
CCCAAACTATGTAATCCATT+AGG + chr4_3:57571342-57571361 None:intergenic 35.0%
GGATTACATAGTTTGGGAAA+TGG - chr4_3:57571345-57571364 Msa0650500:intron 35.0%
ATCATGCAAGTTCGTATAGT+AGG - chr4_3:57571472-57571491 Msa0650500:intron 35.0%
TCATGCAAGTTCGTATAGTA+GGG - chr4_3:57571473-57571492 Msa0650500:intron 35.0%
AGGGAAAATGATCACTCAAT+TGG - chr4_3:57571492-57571511 Msa0650500:intron 35.0%
AATGATCACTCAATTGGAGT+TGG - chr4_3:57571498-57571517 Msa0650500:intron 35.0%
!! ACAAATGGGTTGGTAGATAA+AGG - chr4_3:57571570-57571589 Msa0650500:intron 35.0%
TTGGTAGATAAAGGAGTTGA+AGG - chr4_3:57571579-57571598 Msa0650500:intron 35.0%
TTCCATGGATAAGGCAAAAA+GGG + chr4_3:57571636-57571655 None:intergenic 35.0%
ATTCCATGGATAAGGCAAAA+AGG + chr4_3:57571637-57571656 None:intergenic 35.0%
ATTGCAGAATTCCATGGATA+AGG + chr4_3:57571645-57571664 None:intergenic 35.0%
! AATGCTAATGGATAGTTTGG+TGG + chr4_3:57571687-57571706 None:intergenic 35.0%
ACTGGAGTATAGAATGCTAA+TGG + chr4_3:57571699-57571718 None:intergenic 35.0%
! TTCTTTTGGTGAATTGACTG+AGG + chr4_3:57571868-57571887 None:intergenic 35.0%
!! GTGCTATTGTGTTCATTTTC+AGG + chr4_3:57571894-57571913 None:intergenic 35.0%
TTCACAATTAGGTTTCCTCA+TGG + chr4_3:57572145-57572164 None:intergenic 35.0%
AAGAACTTGTCAGCAGAATA+AGG + chr4_3:57572225-57572244 None:intergenic 35.0%
! TTCCAAAGAGCTTTATCGCA+GGG + chr4_3:57569641-57569660 None:intergenic 40.0%
AATTCTGGTGGAGAAGAAGA+GGG + chr4_3:57569714-57569733 None:intergenic 40.0%
TGTATTGCAGAGGTGAATTC+TGG + chr4_3:57569729-57569748 None:intergenic 40.0%
AGTTTCATGCTGTATTGCAG+AGG + chr4_3:57569739-57569758 None:intergenic 40.0%
TGCAATACAGCATGAAACTG+AGG - chr4_3:57569740-57569759 Msa0650500:three_prime_UTR 40.0%
TCCTACAATACTTATGCCTC+TGG - chr4_3:57570488-57570507 Msa0650500:CDS 40.0%
! ACCAGAGGCATAAGTATTGT+AGG + chr4_3:57570492-57570511 None:intergenic 40.0%
TTAAGCGCAAAGTGAAAGGT+TGG + chr4_3:57570524-57570543 None:intergenic 40.0%
TGACTCTGACTCCTCATATA+TGG + chr4_3:57570562-57570581 None:intergenic 40.0%
CTAATTACAGCACAAGACGA+TGG - chr4_3:57570913-57570932 Msa0650500:CDS 40.0%
!! GGGCATGGAATTATTTTGTC+GGG + chr4_3:57571108-57571127 None:intergenic 40.0%
!! CGGGCATGGAATTATTTTGT+CGG + chr4_3:57571109-57571128 None:intergenic 40.0%
GAATTAAGTTTAGCACCCTC+TGG + chr4_3:57571318-57571337 None:intergenic 40.0%
GATGTTCAATACAGAAGCCA+TGG + chr4_3:57571415-57571434 None:intergenic 40.0%
GAATATGTTGCAACTGAGGA+GGG + chr4_3:57571608-57571627 None:intergenic 40.0%
CTTGGAATATGTTGCAACTG+AGG + chr4_3:57571612-57571631 None:intergenic 40.0%
! TAGTTTGGTGGACAAAAGGT+AGG + chr4_3:57571675-57571694 None:intergenic 40.0%
! TGGATAGTTTGGTGGACAAA+AGG + chr4_3:57571679-57571698 None:intergenic 40.0%
AGTAACTCCACCTGCATATT+GGG - chr4_3:57571716-57571735 Msa0650500:intron 40.0%
ACACATGGTATATTCCATGG+AGG + chr4_3:57571753-57571772 None:intergenic 40.0%
GAGACACATGGTATATTCCA+TGG + chr4_3:57571756-57571775 None:intergenic 40.0%
AATATACCATGTGTCTCACC+AGG - chr4_3:57571759-57571778 Msa0650500:intron 40.0%
!! TGATTAACAGAAGCACTTCC+TGG + chr4_3:57571780-57571799 None:intergenic 40.0%
AGTTCATTGTGGTCAAAGCT+TGG - chr4_3:57571975-57571994 Msa0650500:intron 40.0%
GTTCATTGTGGTCAAAGCTT+GGG - chr4_3:57571976-57571995 Msa0650500:intron 40.0%
GACAAAGCCAATTCTCTCAA+TGG - chr4_3:57572008-57572027 Msa0650500:intron 40.0%
AAAGCCAATTCTCTCAATGG+AGG - chr4_3:57572011-57572030 Msa0650500:intron 40.0%
! GTTCAATGGATTTCAGTCCA+AGG - chr4_3:57572040-57572059 Msa0650500:intron 40.0%
TGGATTTCAGTCCAAGGTAA+AGG - chr4_3:57572046-57572065 Msa0650500:intron 40.0%
GTGATTCATGTCCTTTACCT+TGG + chr4_3:57572060-57572079 None:intergenic 40.0%
GGTAAAGGACATGAATCACA+CGG - chr4_3:57572061-57572080 Msa0650500:intron 40.0%
CAATTAGGTTTCCTCATGGA+AGG + chr4_3:57572141-57572160 None:intergenic 40.0%
AAGTACAACACTGTTGTCCT+AGG + chr4_3:57572301-57572320 None:intergenic 40.0%
AAGAGAGAGAGAGAGAAGGA+GGG + chr4_3:57569428-57569447 None:intergenic 45.0%
AAAGAGAGAGAGAGAGAAGG+AGG + chr4_3:57569429-57569448 None:intergenic 45.0%
CAGAAAGAGAGAGAGAGAGA+AGG + chr4_3:57569432-57569451 None:intergenic 45.0%
! CTTCCAAAGAGCTTTATCGC+AGG + chr4_3:57569642-57569661 None:intergenic 45.0%
CTGCGATAAAGCTCTTTGGA+AGG - chr4_3:57569640-57569659 Msa0650500:three_prime_UTR 45.0%
GAGATGAAGAGTCATTGGCA+GGG + chr4_3:57569692-57569711 None:intergenic 45.0%
AGAGGGAGATGAAGAGTCAT+TGG + chr4_3:57569697-57569716 None:intergenic 45.0%
GAATTCTGGTGGAGAAGAAG+AGG + chr4_3:57569715-57569734 None:intergenic 45.0%
ATTGCAGAGGTGAATTCTGG+TGG + chr4_3:57569726-57569745 None:intergenic 45.0%
GTGGTTCCCATCAGTGAAAT+TGG - chr4_3:57570033-57570052 Msa0650500:CDS 45.0%
GAGAGCTCTTAAATCCTCAG+TGG + chr4_3:57570953-57570972 None:intergenic 45.0%
GTTTCAGCTGATGGAGTCTT+AGG + chr4_3:57571006-57571025 None:intergenic 45.0%
GAATTCTCGGTTTCAGCTGA+TGG + chr4_3:57571015-57571034 None:intergenic 45.0%
! TCTTACAAAAATGACGGGGC+TGG + chr4_3:57571185-57571204 None:intergenic 45.0%
TGTCAAAGATACTGGACTGC+AGG - chr4_3:57571207-57571226 Msa0650500:intron 45.0%
AGAAATGTTCCTGTTGGAGC+TGG - chr4_3:57571240-57571259 Msa0650500:intron 45.0%
!! GAAGCCATGGTGTTACAAAG+CGG + chr4_3:57571402-57571421 None:intergenic 45.0%
TCAGATAGAAAAGGCCACAC+CGG - chr4_3:57571546-57571565 Msa0650500:intron 45.0%
ATCTACCAACCCATTTGTGC+CGG + chr4_3:57571568-57571587 None:intergenic 45.0%
GGAATATGTTGCAACTGAGG+AGG + chr4_3:57571609-57571628 None:intergenic 45.0%
GGATAAGGCAAAAAGGGACT+TGG + chr4_3:57571630-57571649 None:intergenic 45.0%
! GTCCCTTTTTGCCTTATCCA+TGG - chr4_3:57571631-57571650 Msa0650500:intron 45.0%
! TTTGGTGGACAAAAGGTAGG+AGG + chr4_3:57571672-57571691 None:intergenic 45.0%
CAATATGCAGGTGGAGTTAC+TGG + chr4_3:57571717-57571736 None:intergenic 45.0%
CAGTAACTCCACCTGCATAT+TGG - chr4_3:57571715-57571734 Msa0650500:intron 45.0%
GTAACTCCACCTGCATATTG+GGG - chr4_3:57571717-57571736 Msa0650500:intron 45.0%
ATACAACCCCAATATGCAGG+TGG + chr4_3:57571726-57571745 None:intergenic 45.0%
CATGGTATATTCCATGGAGG+TGG + chr4_3:57571750-57571769 None:intergenic 45.0%
TTGAGTGTTTCCCCAAAGTC+GGG + chr4_3:57571827-57571846 None:intergenic 45.0%
CTTGAGTGTTTCCCCAAAGT+CGG + chr4_3:57571828-57571847 None:intergenic 45.0%
! GACTTTGGGGAAACACTCAA+GGG - chr4_3:57571827-57571846 Msa0650500:intron 45.0%
AACTCCTTGCAGCTTCACTT+GGG + chr4_3:57571959-57571978 None:intergenic 45.0%
AAGCTGCAAGGAGTTCATTG+TGG - chr4_3:57571964-57571983 Msa0650500:intron 45.0%
! AATGGAGGAGGCATGTTCAA+TGG - chr4_3:57572026-57572045 Msa0650500:intron 45.0%
TAGGACTCTTGCATGGAGTT+TGG + chr4_3:57572282-57572301 None:intergenic 45.0%
AAACTCCATGCAAGAGTCCT+AGG - chr4_3:57572281-57572300 Msa0650500:CDS 45.0%
AAACACCTGTTCAGTTAGGC+AGG + chr4_3:57572357-57572376 None:intergenic 45.0%
GCAGAAACACCTGTTCAGTT+AGG + chr4_3:57572361-57572380 None:intergenic 45.0%
!! AATTTGTATAAAAAAAAAAA+GGG + chr4_3:57569477-57569496 None:intergenic 5.0%
!!! TAATTTGTATAAAAAAAAAA+AGG + chr4_3:57569478-57569497 None:intergenic 5.0%
!! ATAATATTTAATATATTATG+TGG - chr4_3:57570089-57570108 Msa0650500:CDS 5.0%
GACCCTGCGATAAAGCTCTT+TGG - chr4_3:57569636-57569655 Msa0650500:three_prime_UTR 50.0%
GGGATGATCAGTGGAAGAAG+CGG + chr4_3:57569672-57569691 None:intergenic 50.0%
TCATTGGCAGGGATGATCAG+TGG + chr4_3:57569681-57569700 None:intergenic 50.0%
GGAGATGAAGAGTCATTGGC+AGG + chr4_3:57569693-57569712 None:intergenic 50.0%
AACTGAGGTACGTGCCATGA+AGG - chr4_3:57569755-57569774 Msa0650500:three_prime_UTR 50.0%
!! GGTTGGTGAATTCACACCAG+AGG + chr4_3:57570507-57570526 None:intergenic 50.0%
!! ATCCTCAGTGGTTTGTTGCG+AGG + chr4_3:57570941-57570960 None:intergenic 50.0%
TCAGCTGATGGAGTCTTAGG+AGG + chr4_3:57571003-57571022 None:intergenic 50.0%
TGTCCATGCTATTGCATCGC+GGG + chr4_3:57571128-57571147 None:intergenic 50.0%
GTGTCCATGCTATTGCATCG+CGG + chr4_3:57571129-57571148 None:intergenic 50.0%
CAAAGATACTGGACTGCAGG+AGG - chr4_3:57571210-57571229 Msa0650500:intron 50.0%
TCCTCCGCTTTGTAACACCA+TGG - chr4_3:57571395-57571414 Msa0650500:intron 50.0%
!! GGAGGCATTGCAGAATTCCA+TGG + chr4_3:57571651-57571670 None:intergenic 50.0%
GGCATACAACCCCAATATGC+AGG + chr4_3:57571729-57571748 None:intergenic 50.0%
TCTCAGTTCTGTCCCGACTT+TGG - chr4_3:57571812-57571831 Msa0650500:intron 50.0%
CTCAGTTCTGTCCCGACTTT+GGG - chr4_3:57571813-57571832 Msa0650500:intron 50.0%
TCAGTTCTGTCCCGACTTTG+GGG - chr4_3:57571814-57571833 Msa0650500:intron 50.0%
! CGACTTTGGGGAAACACTCA+AGG - chr4_3:57571826-57571845 Msa0650500:intron 50.0%
TTGGGGAAACACTCAAGGGA+TGG - chr4_3:57571831-57571850 Msa0650500:intron 50.0%
ATGACCCAAGTGAAGCTGCA+AGG - chr4_3:57571952-57571971 Msa0650500:intron 50.0%
GAACTCCTTGCAGCTTCACT+TGG + chr4_3:57571960-57571979 None:intergenic 50.0%
GCCAATTCTCTCAATGGAGG+AGG - chr4_3:57572014-57572033 Msa0650500:intron 50.0%
GCCTCCTCCATTGAGAGAAT+TGG + chr4_3:57572018-57572037 None:intergenic 50.0%
GTTGTCCTAGGACTCTTGCA+TGG + chr4_3:57572289-57572308 None:intergenic 50.0%
GCTCAAGATAGCAGCTACTG+AGG + chr4_3:57572335-57572354 None:intergenic 50.0%
TTGAGCCTGCCTAACTGAAC+AGG - chr4_3:57572349-57572368 Msa0650500:exon 50.0%
AGCCTCGCAACAAACCACTG+AGG - chr4_3:57570936-57570955 Msa0650500:CDS 55.0%
ATGCTATTGCATCGCGGGCA+TGG + chr4_3:57571123-57571142 None:intergenic 55.0%
ATGCCCGCGATGCAATAGCA+TGG - chr4_3:57571122-57571141 Msa0650500:intron 55.0%
!! GCCATGGTGTTACAAAGCGG+AGG + chr4_3:57571399-57571418 None:intergenic 55.0%
AAAGGCCACACCGGCACAAA+TGG - chr4_3:57571555-57571574 Msa0650500:intron 55.0%
AAGGCCACACCGGCACAAAT+GGG - chr4_3:57571556-57571575 Msa0650500:intron 55.0%
GGTGGACAAAAGGTAGGAGG+AGG + chr4_3:57571669-57571688 None:intergenic 55.0%
GCACTTCCTGGTGAGACACA+TGG + chr4_3:57571768-57571787 None:intergenic 55.0%
! GCAGGGTTGGCATACATCAG+CGG + chr4_3:57572098-57572117 None:intergenic 55.0%
GCTGATGTATGCCAACCCTG+CGG - chr4_3:57572097-57572116 Msa0650500:intron 55.0%
! CCAACCCATTTGTGCCGGTG+TGG + chr4_3:57571563-57571582 None:intergenic 60.0%
CCACACCGGCACAAATGGGT+TGG - chr4_3:57571560-57571579 Msa0650500:intron 60.0%
GGGGTTGTATGCCACCTCCA+TGG - chr4_3:57571736-57571755 Msa0650500:intron 60.0%
! CCAACCCTGCGGCTTTATCG+CGG - chr4_3:57572108-57572127 Msa0650500:intron 60.0%
GAGACCGCGATAAAGCCGCA+GGG + chr4_3:57572115-57572134 None:intergenic 60.0%
GCGGTCTCGTACCTTCCATG+AGG - chr4_3:57572127-57572146 Msa0650500:intron 60.0%
TTGCGGCGACCAGCTCCAAC+AGG + chr4_3:57571252-57571271 None:intergenic 65.0%
CCGCGATAAAGCCGCAGGGT+TGG + chr4_3:57572111-57572130 None:intergenic 65.0%
CGAGACCGCGATAAAGCCGC+AGG + chr4_3:57572116-57572135 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 57569424 57572554 57569424 ID=Msa0650500;Name=Msa0650500
chr4_3 mRNA 57569424 57572554 57569424 ID=Msa0650500-mRNA-1;Parent=Msa0650500;Name=Msa0650500-mRNA-1;_AED=0.00;_eAED=0.00;_QI=197|1|1|1|1|1|2|397|467
chr4_3 exon 57569424 57571083 57569424 ID=Msa0650500-mRNA-1:exon:15100;Parent=Msa0650500-mRNA-1
chr4_3 exon 57572217 57572554 57572217 ID=Msa0650500-mRNA-1:exon:15099;Parent=Msa0650500-mRNA-1
chr4_3 five_prime_UTR 57572358 57572554 57572358 ID=Msa0650500-mRNA-1:five_prime_utr;Parent=Msa0650500-mRNA-1
chr4_3 CDS 57572217 57572357 57572217 ID=Msa0650500-mRNA-1:cds;Parent=Msa0650500-mRNA-1
chr4_3 CDS 57569821 57571083 57569821 ID=Msa0650500-mRNA-1:cds;Parent=Msa0650500-mRNA-1
chr4_3 three_prime_UTR 57569424 57569820 57569424 ID=Msa0650500-mRNA-1:three_prime_utr;Parent=Msa0650500-mRNA-1
Gene Sequence

>Msa0650500

ATGTCAGAGGTAAAAGACCCTGCGATAAAGCTCTTTGGAAGGACAATTCCGCTTCTTCCACTGATCATCCCTGCCAATGACTCTTCATCTCCCTCTTCTTCTCCACCAGAATTCACCTCTGCAATACAGCATGAAACTGAGGAACCATCAAGGAAAGAACTAATTACAGCACAAGACGATGGAGCCTCGCAACAAACCACTGAGGATTTAAGAGCTCTCACAACATCTTCAGTTGTACTTGAGAATCCTCCTAAGACTCCATCAGCTGAAACCGAGAATTCGTTATTGAAATCTTCTACAAATGTAGAACAAAGCGAGACTAGTGTTTCCGAAGAAAAAACTCTGAAGAAACCCGACAAAATAATTCCATGCCCGCGATGCAATAGCATGGACACCAAATTTTGTTACTTCAACAATTACAATGTCAACCAGCCCCGTCATTTTTGTAAGAAATGTCAAAGATACTGGACTGCAGGAGGAACAATGAGAAATGTTCCTGTTGGAGCTGGTCGCCGCAAGAACAAAAACTTATCTAGCTCGCATTATCGACATTTGATAATTCCAGAGGGTGCTAAACTTAATTCCCCTAATGGATTACATAGTTTGGGAAATGGAGCAGCTGTTTTGACGTTTGATTCAAATCCTCCGCTTTGTAACACCATGGCTTCTGTATTGAACATCGCTGAAAGAACTCAAAATTGTGTGTCAAATGGTTTTCATCATGCAAGTTCGTATAGTAGGGAAAATGATCACTCAATTGGAGTTGGAGTATCAGTTACAACATCAAATTCATCAGATAGAAAAGGCCACACCGGCACAAATGGGTTGGTAGATAAAGGAGTTGAAGGTTTCCCTCCTCAGTTGCAACATATTCCAAGTCCCTTTTTGCCTTATCCATGGAATTCTGCAATGCCTCCTCCTACCTTTTGTCCACCAAACTATCCATTAGCATTCTATACTCCAGTAACTCCACCTGCATATTGGGGTTGTATGCCACCTCCATGGAATATACCATGTGTCTCACCAGGAAGTGCTTCTGTTAATCAAAGTGACTCTGCTCTCAGTTCTGTCCCGACTTTGGGGAAACACTCAAGGGATGGAAACATCATTACCTCAGTCAATTCACCAAAAGAAAAGCCTGAAAATGAACACAATAGCACTGAAAGCAGCGTTTTGATCCCAAAGACACTTAGATTTGATGACCCAAGTGAAGCTGCAAGGAGTTCATTGTGGTCAAAGCTTGGGATCAATAATGACAAAGCCAATTCTCTCAATGGAGGAGGCATGTTCAATGGATTTCAGTCCAAGGTAAAGGACATGAATCACACGGTTGAAACGTCACCGCTGATGTATGCCAACCCTGCGGCTTTATCGCGGTCTCGTACCTTCCATGAGGAAACCTAA
Protein sequence

>Msa0650500

MSEVKDPAIKLFGRTIPLLPLIIPANDSSSPSSSPPEFTSAIQHETEEPSRKELITAQDDGASQQTTEDLRALTTSSVVLENPPKTPSAETENSLLKSSTNVEQSETSVSEEKTLKKPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSSSHYRHLIIPEGAKLNSPNGLHSLGNGAAVLTFDSNPPLCNTMASVLNIAERTQNCVSNGFHHASSYSRENDHSIGVGVSVTTSNSSDRKGHTGTNGLVDKGVEGFPPQLQHIPSPFLPYPWNSAMPPPTFCPPNYPLAFYTPVTPPAYWGCMPPPWNIPCVSPGSASVNQSDSALSSVPTLGKHSRDGNIITSVNSPKEKPENEHNSTESSVLIPKTLRFDDPSEAARSSLWSKLGINNDKANSLNGGGMFNGFQSKVKDMNHTVETSPLMYANPAALSRSRTFHEET*