AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1172610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1172610 MtrunA17_Chr4g0042481 95.075 467 21 1 1 467 1 465 0.0 894
Msa1172610 MtrunA17_Chr6g0453321 44.071 506 229 18 1 465 1 493 7.15e-115 347
Msa1172610 MtrunA17_Chr7g0217581 43.461 497 236 16 1 465 98 581 8.66e-106 326
Msa1172610 MtrunA17_Chr3g0092111 43.838 495 216 20 1 465 1 463 7.65e-105 320
Msa1172610 MtrunA17_Chr5g0417601 41.237 485 151 17 6 465 4 379 8.84e-87 270
Msa1172610 MtrunA17_Chr5g0417551 38.320 488 151 17 6 465 4 369 1.99e-73 236
Msa1172610 MtrunA17_Chr5g0417561 36.605 489 152 18 6 466 4 362 6.46e-71 229
Msa1172610 MtrunA17_Chr8g0355261 33.537 492 231 19 5 465 11 437 3.76e-62 208
Msa1172610 MtrunA17_Chr7g0254161 32.787 488 237 17 1 465 3 422 4.12e-59 200
Msa1172610 MtrunA17_Chr5g0417571 49.528 212 70 8 4 185 2 206 1.70e-50 174
Msa1172610 MtrunA17_Chr6g0460731 34.056 323 142 11 4 306 9 280 1.32e-42 154
Msa1172610 MtrunA17_Chr6g0460721 46.857 175 76 4 85 243 51 224 8.10e-42 151
Msa1172610 MtrunA17_Chr2g0283811 86.667 60 8 0 116 175 41 100 9.20e-34 124
Msa1172610 MtrunA17_Chr3g0127201 61.765 68 26 0 108 175 13 80 8.85e-26 106
Msa1172610 MtrunA17_Chr8g0346551 65.625 64 22 0 117 180 19 82 2.23e-25 105
Msa1172610 MtrunA17_Chr8g0367161 52.381 84 40 0 97 180 7 90 4.20e-25 105
Msa1172610 MtrunA17_Chr8g0374111 63.934 61 22 0 122 182 29 89 1.01e-24 102
Msa1172610 MtrunA17_Chr2g0326001 64.615 65 23 0 111 175 29 93 2.09e-24 102
Msa1172610 MtrunA17_Chr8g0374251 66.102 59 20 0 122 180 68 126 2.74e-24 103
Msa1172610 MtrunA17_Chr4g0010151 67.241 58 19 0 118 175 78 135 3.10e-24 103
Msa1172610 MtrunA17_Chr1g0188851 57.971 69 29 0 106 174 27 95 7.39e-24 101
Msa1172610 MtrunA17_Chr4g0047001 74.074 54 14 0 124 177 57 110 1.19e-23 102
Msa1172610 MtrunA17_Chr2g0308011 73.469 49 13 0 122 170 37 85 2.83e-23 97.4
Msa1172610 MtrunA17_Chr1g0177251 53.333 90 40 2 117 204 6 95 4.32e-23 99.0
Msa1172610 MtrunA17_Chr4g0031411 58.571 70 26 1 108 174 58 127 4.40e-23 99.8
Msa1172610 MtrunA17_Chr2g0328021 68.519 54 17 0 122 175 62 115 5.14e-23 98.6
Msa1172610 MtrunA17_Chr4g0061761 67.925 53 17 0 120 172 38 90 5.55e-23 99.4
Msa1172610 MtrunA17_Chr8g0341671 62.903 62 23 0 122 183 20 81 6.58e-23 96.7
Msa1172610 MtrunA17_Chr4g0030051 56.000 75 29 1 104 174 19 93 2.56e-22 96.7
Msa1172610 MtrunA17_Chr7g0237921 71.154 52 15 0 124 175 78 129 2.72e-22 97.8
Msa1172610 MtrunA17_Chr7g0223311 72.549 51 14 0 124 174 79 129 6.54e-22 97.1
Msa1172610 MtrunA17_Chr2g0282051 67.857 56 17 1 122 177 46 100 7.34e-22 95.1
Msa1172610 MtrunA17_Chr3g0126201 59.155 71 27 2 107 175 34 104 7.87e-22 96.3
Msa1172610 MtrunA17_Chr4g0047761 70.370 54 15 1 124 177 74 126 1.37e-21 95.1
Msa1172610 MtrunA17_Chr5g0411951 63.636 55 20 0 118 172 39 93 1.47e-21 95.5
Msa1172610 MtrunA17_Chr2g0282511 71.429 49 14 0 122 170 45 93 1.53e-21 95.1
Msa1172610 MtrunA17_Chr3g0117601 61.290 62 23 1 112 172 50 111 2.61e-21 94.7
Msa1172610 MtrunA17_Chr2g0282441 70.000 50 15 0 124 173 27 76 2.87e-21 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1172610 AT3G47500.1 40.408 490 224 17 1 466 2 447 7.07e-85 268
Msa1172610 AT5G39660.3 37.403 516 208 17 4 465 1 455 2.69e-80 256
Msa1172610 AT5G39660.1 37.403 516 208 17 4 465 1 455 2.69e-80 256
Msa1172610 AT5G39660.2 37.403 516 208 17 4 465 1 455 2.69e-80 256
Msa1172610 AT5G62430.1 41.361 382 111 15 89 466 25 297 1.45e-64 211
Msa1172610 AT1G69570.1 32.985 479 223 17 1 465 1 395 5.80e-48 170
Msa1172610 AT1G26790.1 32.265 468 210 17 1 465 7 370 3.71e-47 167
Msa1172610 AT1G29160.1 88.333 60 7 0 116 175 56 115 2.44e-35 129
Msa1172610 AT2G34140.1 52.727 110 52 0 66 175 2 111 4.80e-34 126
Msa1172610 AT5G60200.1 37.931 174 99 4 118 288 51 218 2.66e-27 110
Msa1172610 AT4G24060.1 61.538 65 25 0 111 175 42 106 2.66e-24 103
Msa1172610 AT1G51700.1 53.086 81 31 1 100 180 18 91 2.71e-24 100
Msa1172610 AT3G55370.1 43.243 111 49 2 118 217 72 179 3.86e-24 103
Msa1172610 AT3G55370.2 43.243 111 49 2 118 217 72 179 4.56e-24 103
Msa1172610 AT5G60850.1 72.222 54 15 0 122 175 51 104 4.76e-24 102
Msa1172610 AT2G28810.2 46.078 102 49 2 78 173 27 128 5.06e-24 102
Msa1172610 AT3G55370.3 67.241 58 19 0 118 175 117 174 5.85e-24 103
Msa1172610 AT3G50410.1 68.421 57 18 0 122 178 30 86 6.76e-24 100
Msa1172610 AT2G28810.1 46.078 102 49 2 78 173 44 145 7.32e-24 102
Msa1172610 AT1G21340.1 48.936 94 37 3 124 216 40 123 9.39e-24 100
Msa1172610 AT2G37590.1 57.576 66 28 0 110 175 77 142 1.20e-23 101
Msa1172610 AT1G64620.1 55.128 78 34 1 93 170 21 97 1.52e-23 102
Msa1172610 AT3G61850.2 60.938 64 25 0 112 175 52 115 1.83e-23 100
Msa1172610 AT3G61850.3 60.938 64 25 0 112 175 52 115 1.83e-23 100
Msa1172610 AT3G61850.1 58.824 68 28 0 112 179 64 131 2.22e-23 100
Msa1172610 AT3G61850.5 60.938 64 25 0 112 175 52 115 3.15e-23 100
Msa1172610 AT3G61850.4 58.824 68 28 0 112 179 64 131 3.59e-23 100
Msa1172610 AT3G21270.1 71.698 53 15 0 122 174 29 81 3.94e-23 97.4
Msa1172610 AT2G28510.1 67.797 59 19 0 124 182 50 108 6.96e-23 98.6
Msa1172610 AT1G07640.1 69.811 53 16 0 122 174 21 73 7.96e-23 98.2
Msa1172610 AT3G45610.1 57.143 63 27 0 118 180 36 98 8.58e-23 97.4
Msa1172610 AT1G28310.1 70.370 54 16 0 122 175 27 80 9.50e-23 99.0
Msa1172610 AT1G07640.2 69.811 53 16 0 122 174 77 129 1.30e-22 99.0
Msa1172610 AT1G28310.2 47.475 99 43 2 79 175 13 104 1.55e-22 98.6
Msa1172610 AT1G07640.3 69.811 53 16 0 122 174 85 137 1.65e-22 98.6
Msa1172610 AT5G02460.1 57.746 71 27 1 108 175 78 148 1.86e-22 99.4
Msa1172610 AT5G66940.1 60.000 60 24 0 122 181 32 91 2.47e-22 95.5
Msa1172610 AT5G65590.1 54.930 71 32 0 105 175 24 94 3.36e-22 97.4
Msa1172610 AT4G00940.1 56.757 74 27 1 109 177 50 123 4.54e-22 96.7
Msa1172610 AT4G00940.3 56.757 74 27 1 109 177 50 123 4.54e-22 96.7
Msa1172610 AT4G00940.2 56.757 74 27 1 109 177 50 123 4.54e-22 96.7
Msa1172610 AT1G47655.1 71.429 49 14 0 122 170 29 77 7.53e-22 94.0
Msa1172610 AT3G52440.2 48.936 94 40 3 93 180 11 102 9.83e-22 95.1
Msa1172610 AT4G38000.1 62.500 56 20 1 121 176 40 94 2.77e-21 93.2
Msa1172610 AT3G52440.1 64.912 57 20 0 124 180 27 83 2.91e-21 93.2
Msa1172610 AT2G46590.1 60.656 61 22 1 109 169 57 115 3.50e-21 95.1
Msa1172610 AT2G46590.2 60.656 61 22 1 109 169 69 127 3.76e-21 95.1
Msa1172610 AT4G21050.1 43.564 101 55 1 115 213 17 117 6.50e-21 91.3
Msa1172610 AT5G62940.1 69.388 49 15 0 124 172 75 123 9.90e-20 90.9
Msa1172610 AT4G21040.1 47.297 74 37 1 102 175 7 78 1.15e-17 82.4
Msa1172610 AT4G21080.1 57.692 52 22 0 124 175 27 78 1.55e-16 79.7
Msa1172610 AT4G21030.1 59.091 44 18 0 124 167 23 66 4.09e-11 62.8

Find 141 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGTTCTGTCCCGACTTT+GGG 0.197222 8_1:+2718523 Msa1172610:CDS
CCCTAATGGATTACATAGTT+TGG 0.197772 8_1:+2718048 Msa1172610:CDS
TTTCAATGCAATTCACAATT+AGG 0.220175 8_1:-2718863 None:intergenic
GTAATTAGTTCTTTCCTTGA+TGG 0.235655 8_1:-2717608 None:intergenic
CCAAACTATGTAATCCATTA+GGG 0.240822 8_1:-2718048 None:intergenic
AGTAACTCCACCTGCATATT+GGG 0.244547 8_1:+2718426 Msa1172610:CDS
TCATCAAATCTAAGTGTCTT+TGG 0.276528 8_1:-2718643 None:intergenic
CAATATGCAGGTGGAGTTAC+TGG 0.285499 8_1:-2718424 None:intergenic
TTTGAGACTAACATTATTGT+AGG 0.298707 8_1:-2719243 None:intergenic
GTAAGAAATGTCAAAGATAC+TGG 0.307217 8_1:+2717909 Msa1172610:CDS
ATTGTTGAAGTAACAAAATT+TGG 0.309323 8_1:-2717858 None:intergenic
CCCAAACTATGTAATCCATT+AGG 0.311917 8_1:-2718049 None:intergenic
ATTCCATGGATAAGGCAAAA+AGG 0.312423 8_1:-2718344 None:intergenic
CAGTAACTCCACCTGCATAT+TGG 0.313645 8_1:+2718425 Msa1172610:CDS
GCTAAACTTAATTCCCCTAA+TGG 0.325757 8_1:+2718034 Msa1172610:CDS
ACAATAATGTTAGTCTTCAT+TGG 0.332215 8_1:+2719182 Msa1172610:three_prime_UTR
GCCTCCTCCATTGAGAGAAT+TGG 0.332869 8_1:-2718725 None:intergenic
CCTAATGGATTACATAGTTT+GGG 0.335592 8_1:+2718049 Msa1172610:CDS
TAGAATGCTAATGGATAGTT+TGG 0.337503 8_1:-2718397 None:intergenic
GTTTCAGCTGATGGAGTCTT+AGG 0.353075 8_1:-2717713 None:intergenic
TAGGACTCTTGCATGGAGTT+TGG 0.359745 8_1:-2718989 None:intergenic
AAGAACTTGTCAGCAGAATA+AGG 0.366367 8_1:-2718932 None:intergenic
ATCATGCAAGTTCGTATAGT+AGG 0.370122 8_1:+2718182 Msa1172610:CDS
TCTCAGTTCTGTCCCGACTT+TGG 0.371870 8_1:+2718522 Msa1172610:CDS
AAAGGCCACACCGGCACAAA+TGG 0.375943 8_1:+2718265 Msa1172610:CDS
GACCCTGCGATAAAGCTCTT+TGG 0.376470 8_1:+2716353 Msa1172610:CDS
GGGGATATTATATAGTTTGA+TGG 0.384459 8_1:-2716172 None:intergenic
ACAAATGGGTTGGTAGATAA+AGG 0.391250 8_1:+2718280 Msa1172610:CDS
AGGGAAAATGATCACTCAAT+TGG 0.410885 8_1:+2718202 Msa1172610:CDS
CATCAAATCTAAGTGTCTTT+GGG 0.411049 8_1:-2718642 None:intergenic
TGATTAACAGAAGCACTTCC+TGG 0.414702 8_1:-2718487 None:intergenic
GAACTCCTTGCAGCTTCACT+TGG 0.415659 8_1:-2718667 None:intergenic
AGAGGGAGATGAAGAGTCAT+TGG 0.419013 8_1:-2716411 None:intergenic
AGATTTCAATAACGAATTCT+CGG 0.425048 8_1:-2717735 None:intergenic
TTGGTAGATAAAGGAGTTGA+AGG 0.425049 8_1:+2718289 Msa1172610:CDS
GGATTACATAGTTTGGGAAA+TGG 0.427090 8_1:+2718055 Msa1172610:CDS
ACTCAAAATTGTGTGTCAAA+TGG 0.434475 8_1:+2718154 Msa1172610:CDS
CAGATTTGATAATATGTTGT+TGG 0.444254 8_1:+2719093 Msa1172610:three_prime_UTR
TGTATTGCAGAGGTGAATTC+TGG 0.445396 8_1:-2716443 None:intergenic
TTGAGCCTGCCTAACTGAAC+AGG 0.455235 8_1:+2719059 Msa1172610:three_prime_UTR
AGTTCATTGTGGTCAAAGCT+TGG 0.456620 8_1:+2718685 Msa1172610:CDS
TTGAGTGTTTCCCCAAAGTC+GGG 0.458025 8_1:-2718534 None:intergenic
ACTGGAGTATAGAATGCTAA+TGG 0.468260 8_1:-2718406 None:intergenic
TGATCTTTATTATTCTCAAA+AGG 0.468272 8_1:+2718954 Msa1172610:three_prime_UTR
GTGATTCATGTCCTTTACCT+TGG 0.468280 8_1:-2718767 None:intergenic
GTTCATTGTGGTCAAAGCTT+GGG 0.469560 8_1:+2718686 Msa1172610:CDS
GACAAAGCCAATTCTCTCAA+TGG 0.470994 8_1:+2718718 Msa1172610:CDS
TGGATAGTTTGGTGGACAAA+AGG 0.471372 8_1:-2718386 None:intergenic
GGAGATGAAGAGTCATTGGC+AGG 0.477484 8_1:-2716407 None:intergenic
AATGGAGGAGGCATGTTCAA+TGG 0.477902 8_1:+2718736 Msa1172610:CDS
GAATTCTCGGTTTCAGCTGA+TGG 0.478162 8_1:-2717722 None:intergenic
ATGCTATTGCATCGCGGGCA+TGG 0.486276 8_1:-2717830 None:intergenic
GAATTCTGGTGGAGAAGAAG+AGG 0.486452 8_1:-2716429 None:intergenic
ATTGCAGAATTCCATGGATA+AGG 0.486834 8_1:-2718352 None:intergenic
AAACTCCATGCAAGAGTCCT+AGG 0.487050 8_1:+2718991 Msa1172610:three_prime_UTR
GAATTAAGTTTAGCACCCTC+TGG 0.491397 8_1:-2718025 None:intergenic
AGATTTGATAATATGTTGTT+GGG 0.494242 8_1:+2719094 Msa1172610:three_prime_UTR
TTGCGGCGACCAGCTCCAAC+AGG 0.495368 8_1:-2717959 None:intergenic
AAGTACAACACTGTTGTCCT+AGG 0.502288 8_1:-2719008 None:intergenic
CCGCGATAAAGCCGCAGGGT+TGG 0.504467 8_1:-2718818 None:intergenic
AATGATCACTCAATTGGAGT+TGG 0.507132 8_1:+2718208 Msa1172610:CDS
AACTCCTTGCAGCTTCACTT+GGG 0.509294 8_1:-2718666 None:intergenic
TCAAATTCATCAGATAGAAA+AGG 0.510956 8_1:+2718247 Msa1172610:CDS
AAGGCCACACCGGCACAAAT+GGG 0.516822 8_1:+2718266 Msa1172610:CDS
GGCATACAACCCCAATATGC+AGG 0.516977 8_1:-2718436 None:intergenic
AAACACCTGTTCAGTTAGGC+AGG 0.517381 8_1:-2719064 None:intergenic
TGGATTTCAGTCCAAGGTAA+AGG 0.518064 8_1:+2718756 Msa1172610:CDS
CAATTAGGTTTCCTCATGGA+AGG 0.522646 8_1:-2718848 None:intergenic
CTTGAGTGTTTCCCCAAAGT+CGG 0.525777 8_1:-2718535 None:intergenic
TGTCAAAGATACTGGACTGC+AGG 0.528621 8_1:+2717917 Msa1172610:CDS
ATCTACCAACCCATTTGTGC+CGG 0.532135 8_1:-2718275 None:intergenic
TGTCCATGCTATTGCATCGC+GGG 0.535971 8_1:-2717835 None:intergenic
CGAGACCGCGATAAAGCCGC+AGG 0.536771 8_1:-2718823 None:intergenic
TTTACCTCTGACATTTCTGT+AGG 0.537948 8_1:-2716329 None:intergenic
CGACTTTGGGGAAACACTCA+AGG 0.540052 8_1:+2718536 Msa1172610:CDS
TCATGCAAGTTCGTATAGTA+GGG 0.541345 8_1:+2718183 Msa1172610:CDS
TTCACAATTAGGTTTCCTCA+TGG 0.553418 8_1:-2718852 None:intergenic
ATCCTCAGTGGTTTGTTGCG+AGG 0.554021 8_1:-2717648 None:intergenic
AATGCTAATGGATAGTTTGG+TGG 0.554354 8_1:-2718394 None:intergenic
GAGACACATGGTATATTCCA+TGG 0.554398 8_1:-2718463 None:intergenic
GCAGAAACACCTGTTCAGTT+AGG 0.556152 8_1:-2719068 None:intergenic
CTTCCAAAGAGCTTTATCGC+AGG 0.556819 8_1:-2716356 None:intergenic
ACAATGAGAAATGTTCCTGT+TGG 0.557862 8_1:+2717944 Msa1172610:CDS
TCAGCTGATGGAGTCTTAGG+AGG 0.562404 8_1:-2717710 None:intergenic
TAGTTTGGTGGACAAAAGGT+AGG 0.562573 8_1:-2718382 None:intergenic
AATTCTGGTGGAGAAGAAGA+GGG 0.562827 8_1:-2716428 None:intergenic
GCCAATTCTCTCAATGGAGG+AGG 0.563194 8_1:+2718724 Msa1172610:CDS
TTCCAAAGAGCTTTATCGCA+GGG 0.567023 8_1:-2716355 None:intergenic
GAATATGTTGCAACTGAGGA+GGG 0.570048 8_1:-2718315 None:intergenic
GGAGGCATTGCAGAATTCCA+TGG 0.572249 8_1:-2718358 None:intergenic
TTTGGTGGACAAAAGGTAGG+AGG 0.574664 8_1:-2718379 None:intergenic
GGAATATGTTGCAACTGAGG+AGG 0.574863 8_1:-2718316 None:intergenic
TGAGTGAAAATATTATGAGA+TGG 0.574965 8_1:-2716271 None:intergenic
AGAAATGTTCCTGTTGGAGC+TGG 0.575931 8_1:+2717950 Msa1172610:CDS
CTTGGAATATGTTGCAACTG+AGG 0.581444 8_1:-2718319 None:intergenic
TTGGGGAAACACTCAAGGGA+TGG 0.586619 8_1:+2718541 Msa1172610:CDS
GGGGTTGTATGCCACCTCCA+TGG 0.588317 8_1:+2718446 Msa1172610:CDS
CATGGTATATTCCATGGAGG+TGG 0.595774 8_1:-2718457 None:intergenic
GTTGTCCTAGGACTCTTGCA+TGG 0.602070 8_1:-2718996 None:intergenic
GGTGGACAAAAGGTAGGAGG+AGG 0.603448 8_1:-2718376 None:intergenic
CCAACCCATTTGTGCCGGTG+TGG 0.605033 8_1:-2718270 None:intergenic
CGACATTTGATAATTCCAGA+GGG 0.606272 8_1:+2718010 Msa1172610:CDS
TCAGTTCTGTCCCGACTTTG+GGG 0.606745 8_1:+2718524 Msa1172610:CDS
CCACACCGGCACAAATGGGT+TGG 0.611096 8_1:+2718270 Msa1172610:CDS
GTAACTCCACCTGCATATTG+GGG 0.611433 8_1:+2718427 Msa1172610:CDS
CAAAGATACTGGACTGCAGG+AGG 0.611856 8_1:+2717920 Msa1172610:CDS
GTTCAATGGATTTCAGTCCA+AGG 0.615097 8_1:+2718750 Msa1172610:CDS
CTGCGATAAAGCTCTTTGGA+AGG 0.619750 8_1:+2716357 Msa1172610:CDS
AATATACCATGTGTCTCACC+AGG 0.620306 8_1:+2718469 Msa1172610:CDS
GATGTTCAATACAGAAGCCA+TGG 0.623380 8_1:-2718122 None:intergenic
GAGATGAAGAGTCATTGGCA+GGG 0.625244 8_1:-2716406 None:intergenic
TCGACATTTGATAATTCCAG+AGG 0.625580 8_1:+2718009 Msa1172610:CDS
TCATTGGCAGGGATGATCAG+TGG 0.630276 8_1:-2716395 None:intergenic
GCACTTCCTGGTGAGACACA+TGG 0.630353 8_1:-2718475 None:intergenic
AGTTTCATGCTGTATTGCAG+AGG 0.631365 8_1:-2716453 None:intergenic
GACTTTGGGGAAACACTCAA+GGG 0.631484 8_1:+2718537 Msa1172610:CDS
ATGACCCAAGTGAAGCTGCA+AGG 0.632038 8_1:+2718662 Msa1172610:CDS
GTGTCCATGCTATTGCATCG+CGG 0.634519 8_1:-2717836 None:intergenic
ATGCCCGCGATGCAATAGCA+TGG 0.635421 8_1:+2717832 Msa1172610:CDS
CCAACCCTGCGGCTTTATCG+CGG 0.637960 8_1:+2718818 Msa1172610:CDS
GGGATGATCAGTGGAAGAAG+CGG 0.640321 8_1:-2716386 None:intergenic
GAGAGCTCTTAAATCCTCAG+TGG 0.645204 8_1:-2717660 None:intergenic
GCAGGGTTGGCATACATCAG+CGG 0.645757 8_1:-2718805 None:intergenic
GCTCAAGATAGCAGCTACTG+AGG 0.646149 8_1:-2719042 None:intergenic
CAAACTATGTAATCCATTAG+GGG 0.651674 8_1:-2718047 None:intergenic
TCAGATAGAAAAGGCCACAC+CGG 0.654081 8_1:+2718256 Msa1172610:CDS
CTAATTACAGCACAAGACGA+TGG 0.658149 8_1:+2717623 Msa1172610:CDS
AAAGCCAATTCTCTCAATGG+AGG 0.662101 8_1:+2718721 Msa1172610:CDS
TGCAATACAGCATGAAACTG+AGG 0.664237 8_1:+2716457 Msa1172610:CDS
GCCATGGTGTTACAAAGCGG+AGG 0.666467 8_1:-2718106 None:intergenic
ATTGCAGAGGTGAATTCTGG+TGG 0.675104 8_1:-2716440 None:intergenic
TCCTCCGCTTTGTAACACCA+TGG 0.687107 8_1:+2718105 Msa1172610:CDS
AAGCTGCAAGGAGTTCATTG+TGG 0.697169 8_1:+2718674 Msa1172610:CDS
GGTAAAGGACATGAATCACA+CGG 0.721107 8_1:+2718771 Msa1172610:CDS
ATACAACCCCAATATGCAGG+TGG 0.724114 8_1:-2718433 None:intergenic
GAAGCCATGGTGTTACAAAG+CGG 0.731105 8_1:-2718109 None:intergenic
GAGACCGCGATAAAGCCGCA+GGG 0.731318 8_1:-2718822 None:intergenic
GCGGTCTCGTACCTTCCATG+AGG 0.732623 8_1:+2718837 Msa1172610:CDS
ACACATGGTATATTCCATGG+AGG 0.757531 8_1:-2718460 None:intergenic
GCTGATGTATGCCAACCCTG+CGG 0.770728 8_1:+2718807 Msa1172610:CDS
AGCCTCGCAACAAACCACTG+AGG 0.809905 8_1:+2717646 Msa1172610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTGTATAAAAAAAAAAG+GGG - chr8_1:2716194-2716213 None:intergenic 10.0%
!! ATTTATATAAAAATTGTTCA+TGG + chr8_1:2717104-2717123 Msa1172610:intron 10.0%
!!! CAATTATCAATTTTTTGTTT+TGG + chr8_1:2716855-2716874 Msa1172610:intron 15.0%
!!! TTAATCATATTCATTGTTTT+AGG + chr8_1:2717583-2717602 Msa1172610:intron 15.0%
!! ATTAACTGCTTAAGAAAAAT+GGG - chr8_1:2716570-2716589 None:intergenic 20.0%
!! AATTAACTGCTTAAGAAAAA+TGG - chr8_1:2716571-2716590 None:intergenic 20.0%
!! TTAAGCAGTTAATTGTTAAT+GGG + chr8_1:2716577-2716596 Msa1172610:intron 20.0%
!!! TTGAATCTTTTATTAAGTTG+TGG + chr8_1:2716713-2716732 Msa1172610:intron 20.0%
!! TAAAACTAATCTATGGTATT+TGG - chr8_1:2717153-2717172 None:intergenic 20.0%
!!! AATACCATAGATTAGTTTTA+TGG + chr8_1:2717153-2717172 Msa1172610:intron 20.0%
!!! TTTGTTTTTTACTTCTATTG+AGG + chr8_1:2717499-2717518 Msa1172610:intron 20.0%
!! ATTGTTGAAGTAACAAAATT+TGG - chr8_1:2717861-2717880 None:intergenic 20.0%
!! TGATCTTTATTATTCTCAAA+AGG + chr8_1:2718954-2718973 Msa1172610:three_prime_UTR 20.0%
!!! AGATTTGATAATATGTTGTT+GGG + chr8_1:2719094-2719113 Msa1172610:three_prime_UTR 20.0%
! TGAGTGAAAATATTATGAGA+TGG - chr8_1:2716274-2716293 None:intergenic 25.0%
! CTTAAGCAGTTAATTGTTAA+TGG + chr8_1:2716576-2716595 Msa1172610:intron 25.0%
!! TTTTGATGTCAATTGAATTG+AGG + chr8_1:2716617-2716636 Msa1172610:intron 25.0%
! AAATTGGATCGAATTTATTC+TGG + chr8_1:2716766-2716785 Msa1172610:intron 25.0%
! TAACCAAAAAACTTCAATCA+AGG - chr8_1:2716954-2716973 None:intergenic 25.0%
!! CAAAATAGTTTAGTTCAAGT+CGG - chr8_1:2716986-2717005 None:intergenic 25.0%
!!! TTTATGGACTGTTAGTTTTT+AGG + chr8_1:2717169-2717188 Msa1172610:intron 25.0%
!!! CTGCATATAATTTTAGTATG+AGG - chr8_1:2717371-2717390 None:intergenic 25.0%
! AGATTTCAATAACGAATTCT+CGG - chr8_1:2717738-2717757 None:intergenic 25.0%
!!! TTTCTTCAGAGTTTTTTCTT+CGG - chr8_1:2717795-2717814 None:intergenic 25.0%
! ACATTTCTTACAAAAATGAC+GGG - chr8_1:2717900-2717919 None:intergenic 25.0%
! GACATTTCTTACAAAAATGA+CGG - chr8_1:2717901-2717920 None:intergenic 25.0%
!! TAGATAAGTTTTTGTTCTTG+CGG - chr8_1:2717979-2717998 None:intergenic 25.0%
! TCAAATTCATCAGATAGAAA+AGG + chr8_1:2718247-2718266 Msa1172610:CDS 25.0%
! TTTCAATGCAATTCACAATT+AGG - chr8_1:2718866-2718885 None:intergenic 25.0%
!! CAGATTTGATAATATGTTGT+TGG + chr8_1:2719093-2719112 Msa1172610:three_prime_UTR 25.0%
!!! ACAATAATGTTAGTCTTCAT+TGG + chr8_1:2719182-2719201 Msa1172610:three_prime_UTR 25.0%
! AAAAAAGGTAACAAAACAAC+AGG - chr8_1:2719211-2719230 None:intergenic 25.0%
GGGGATATTATATAGTTTGA+TGG - chr8_1:2716175-2716194 None:intergenic 30.0%
TCAATCATATGAAACCTTCA+TGG - chr8_1:2716489-2716508 None:intergenic 30.0%
GAAAAAACCAAAGCAAAACA+AGG - chr8_1:2716836-2716855 None:intergenic 30.0%
!!! TTGCCTTGATTGAAGTTTTT+TGG + chr8_1:2716948-2716967 Msa1172610:intron 30.0%
! CGACTTGAACTAAACTATTT+TGG + chr8_1:2716984-2717003 Msa1172610:intron 30.0%
!!! TGTTATTTTGACACAGAACA+AGG - chr8_1:2717037-2717056 None:intergenic 30.0%
AATTATGTTGTGATGTCACA+AGG - chr8_1:2717084-2717103 None:intergenic 30.0%
ATTGTTCATGGACATATTAC+TGG + chr8_1:2717116-2717135 Msa1172610:intron 30.0%
CAGTCCATAAAACTAATCTA+TGG - chr8_1:2717160-2717179 None:intergenic 30.0%
! AATTTTAAGCGCAAAGTGAA+AGG - chr8_1:2717245-2717264 None:intergenic 30.0%
TCTATGAGAATCCATATATG+AGG + chr8_1:2717265-2717284 Msa1172610:intron 30.0%
GCATACGTGTATAAAAACAT+TGG - chr8_1:2717430-2717449 None:intergenic 30.0%
GCATACGTGTATAAAAACAT+TGG - chr8_1:2717430-2717449 None:intergenic 30.0%
!! TGTTTTTATACACGTATGCT+CGG + chr8_1:2717458-2717477 Msa1172610:intron 30.0%
AACTTACTGTGTACACAAAA+GGG - chr8_1:2717550-2717569 None:intergenic 30.0%
TAACTTACTGTGTACACAAA+AGG - chr8_1:2717551-2717570 None:intergenic 30.0%
! GTAATTAGTTCTTTCCTTGA+TGG - chr8_1:2717611-2717630 None:intergenic 30.0%
CATTTCTTACAAAAATGACG+GGG - chr8_1:2717899-2717918 None:intergenic 30.0%
GTAAGAAATGTCAAAGATAC+TGG + chr8_1:2717909-2717928 Msa1172610:CDS 30.0%
CAAACTATGTAATCCATTAG+GGG - chr8_1:2718050-2718069 None:intergenic 30.0%
CCAAACTATGTAATCCATTA+GGG - chr8_1:2718051-2718070 None:intergenic 30.0%
!! CCTAATGGATTACATAGTTT+GGG + chr8_1:2718049-2718068 Msa1172610:CDS 30.0%
ACTCAAAATTGTGTGTCAAA+TGG + chr8_1:2718154-2718173 Msa1172610:CDS 30.0%
! TAGAATGCTAATGGATAGTT+TGG - chr8_1:2718400-2718419 None:intergenic 30.0%
!! TCATTTTCAGGCTTTTCTTT+TGG - chr8_1:2718592-2718611 None:intergenic 30.0%
CATCAAATCTAAGTGTCTTT+GGG - chr8_1:2718645-2718664 None:intergenic 30.0%
TCATCAAATCTAAGTGTCTT+TGG - chr8_1:2718646-2718665 None:intergenic 30.0%
AGGAGAGAATCTTCAAAAAA+AGG - chr8_1:2719226-2719245 None:intergenic 30.0%
!!! TGTGTGTGACTCAGTTTTTT+AGG - chr8_1:2716303-2716322 None:intergenic 35.0%
! TTTTCCTACAGAAATGTCAG+AGG + chr8_1:2716325-2716344 Msa1172610:exon 35.0%
TTTACCTCTGACATTTCTGT+AGG - chr8_1:2716332-2716351 None:intergenic 35.0%
ACTGCTTAAGAAAAATGGGT+TGG - chr8_1:2716566-2716585 None:intergenic 35.0%
GGAATTGCTGAAATTCTCAA+TGG + chr8_1:2716638-2716657 Msa1172610:intron 35.0%
TGTGGCTCAAATTCATTATG+TGG + chr8_1:2716731-2716750 Msa1172610:intron 35.0%
TTCGATCCAATTTCACTGAT+GGG - chr8_1:2716759-2716778 None:intergenic 35.0%
ATTCGATCCAATTTCACTGA+TGG - chr8_1:2716760-2716779 None:intergenic 35.0%
!!! TGGTTTACCTTGTTTTGCTT+TGG + chr8_1:2716826-2716845 Msa1172610:intron 35.0%
ACAGAACAAGGACATGAATA+TGG - chr8_1:2717025-2717044 None:intergenic 35.0%
TATTGTAGGAGACAAGAGTA+AGG - chr8_1:2717195-2717214 None:intergenic 35.0%
!!! CATTGTTTTAGGAACCATCA+AGG + chr8_1:2717594-2717613 Msa1172610:intron 35.0%
ACAATGAGAAATGTTCCTGT+TGG + chr8_1:2717944-2717963 Msa1172610:CDS 35.0%
! TCGACATTTGATAATTCCAG+AGG + chr8_1:2718009-2718028 Msa1172610:CDS 35.0%
! CGACATTTGATAATTCCAGA+GGG + chr8_1:2718010-2718029 Msa1172610:CDS 35.0%
GCTAAACTTAATTCCCCTAA+TGG + chr8_1:2718034-2718053 Msa1172610:CDS 35.0%
!! CCCTAATGGATTACATAGTT+TGG + chr8_1:2718048-2718067 Msa1172610:CDS 35.0%
CCCAAACTATGTAATCCATT+AGG - chr8_1:2718052-2718071 None:intergenic 35.0%
GGATTACATAGTTTGGGAAA+TGG + chr8_1:2718055-2718074 Msa1172610:CDS 35.0%
ATCATGCAAGTTCGTATAGT+AGG + chr8_1:2718182-2718201 Msa1172610:CDS 35.0%
TCATGCAAGTTCGTATAGTA+GGG + chr8_1:2718183-2718202 Msa1172610:CDS 35.0%
AGGGAAAATGATCACTCAAT+TGG + chr8_1:2718202-2718221 Msa1172610:CDS 35.0%
AATGATCACTCAATTGGAGT+TGG + chr8_1:2718208-2718227 Msa1172610:CDS 35.0%
!! ACAAATGGGTTGGTAGATAA+AGG + chr8_1:2718280-2718299 Msa1172610:CDS 35.0%
TTGGTAGATAAAGGAGTTGA+AGG + chr8_1:2718289-2718308 Msa1172610:CDS 35.0%
TTCCATGGATAAGGCAAAAA+GGG - chr8_1:2718346-2718365 None:intergenic 35.0%
ATTCCATGGATAAGGCAAAA+AGG - chr8_1:2718347-2718366 None:intergenic 35.0%
ATTGCAGAATTCCATGGATA+AGG - chr8_1:2718355-2718374 None:intergenic 35.0%
! AATGCTAATGGATAGTTTGG+TGG - chr8_1:2718397-2718416 None:intergenic 35.0%
ACTGGAGTATAGAATGCTAA+TGG - chr8_1:2718409-2718428 None:intergenic 35.0%
! TTCTTTTGGTGAATTGACTG+AGG - chr8_1:2718578-2718597 None:intergenic 35.0%
!! GTGCTATTGTGTTCATTTTC+AGG - chr8_1:2718604-2718623 None:intergenic 35.0%
TTCACAATTAGGTTTCCTCA+TGG - chr8_1:2718855-2718874 None:intergenic 35.0%
AAGAACTTGTCAGCAGAATA+AGG - chr8_1:2718935-2718954 None:intergenic 35.0%
! TTCCAAAGAGCTTTATCGCA+GGG - chr8_1:2716358-2716377 None:intergenic 40.0%
AATTCTGGTGGAGAAGAAGA+GGG - chr8_1:2716431-2716450 None:intergenic 40.0%
TGTATTGCAGAGGTGAATTC+TGG - chr8_1:2716446-2716465 None:intergenic 40.0%
AGTTTCATGCTGTATTGCAG+AGG - chr8_1:2716456-2716475 None:intergenic 40.0%
TGCAATACAGCATGAAACTG+AGG + chr8_1:2716457-2716476 Msa1172610:CDS 40.0%
TCCTACAATACTTATGCCTC+TGG + chr8_1:2717205-2717224 Msa1172610:intron 40.0%
! ACCAGAGGCATAAGTATTGT+AGG - chr8_1:2717209-2717228 None:intergenic 40.0%
TTAAGCGCAAAGTGAAAGGT+TGG - chr8_1:2717241-2717260 None:intergenic 40.0%
TGACTCTGACTCCTCATATA+TGG - chr8_1:2717279-2717298 None:intergenic 40.0%
CTAATTACAGCACAAGACGA+TGG + chr8_1:2717623-2717642 Msa1172610:CDS 40.0%
!! GGGCATGGAATTATTTTGTC+GGG - chr8_1:2717818-2717837 None:intergenic 40.0%
!! CGGGCATGGAATTATTTTGT+CGG - chr8_1:2717819-2717838 None:intergenic 40.0%
GAATTAAGTTTAGCACCCTC+TGG - chr8_1:2718028-2718047 None:intergenic 40.0%
GATGTTCAATACAGAAGCCA+TGG - chr8_1:2718125-2718144 None:intergenic 40.0%
GAATATGTTGCAACTGAGGA+GGG - chr8_1:2718318-2718337 None:intergenic 40.0%
CTTGGAATATGTTGCAACTG+AGG - chr8_1:2718322-2718341 None:intergenic 40.0%
! TAGTTTGGTGGACAAAAGGT+AGG - chr8_1:2718385-2718404 None:intergenic 40.0%
! TGGATAGTTTGGTGGACAAA+AGG - chr8_1:2718389-2718408 None:intergenic 40.0%
AGTAACTCCACCTGCATATT+GGG + chr8_1:2718426-2718445 Msa1172610:CDS 40.0%
ACACATGGTATATTCCATGG+AGG - chr8_1:2718463-2718482 None:intergenic 40.0%
GAGACACATGGTATATTCCA+TGG - chr8_1:2718466-2718485 None:intergenic 40.0%
AATATACCATGTGTCTCACC+AGG + chr8_1:2718469-2718488 Msa1172610:CDS 40.0%
!! TGATTAACAGAAGCACTTCC+TGG - chr8_1:2718490-2718509 None:intergenic 40.0%
AGTTCATTGTGGTCAAAGCT+TGG + chr8_1:2718685-2718704 Msa1172610:CDS 40.0%
GTTCATTGTGGTCAAAGCTT+GGG + chr8_1:2718686-2718705 Msa1172610:CDS 40.0%
GACAAAGCCAATTCTCTCAA+TGG + chr8_1:2718718-2718737 Msa1172610:CDS 40.0%
AAAGCCAATTCTCTCAATGG+AGG + chr8_1:2718721-2718740 Msa1172610:CDS 40.0%
! GTTCAATGGATTTCAGTCCA+AGG + chr8_1:2718750-2718769 Msa1172610:CDS 40.0%
TGGATTTCAGTCCAAGGTAA+AGG + chr8_1:2718756-2718775 Msa1172610:CDS 40.0%
GTGATTCATGTCCTTTACCT+TGG - chr8_1:2718770-2718789 None:intergenic 40.0%
GGTAAAGGACATGAATCACA+CGG + chr8_1:2718771-2718790 Msa1172610:CDS 40.0%
CAATTAGGTTTCCTCATGGA+AGG - chr8_1:2718851-2718870 None:intergenic 40.0%
AAGTACAACACTGTTGTCCT+AGG - chr8_1:2719011-2719030 None:intergenic 40.0%
AAGAGAGAGAGAGAGAAGGA+GGG - chr8_1:2716146-2716165 None:intergenic 45.0%
AAAGAGAGAGAGAGAGAAGG+AGG - chr8_1:2716147-2716166 None:intergenic 45.0%
CAGAAAGAGAGAGAGAGAGA+AGG - chr8_1:2716150-2716169 None:intergenic 45.0%
! CTTCCAAAGAGCTTTATCGC+AGG - chr8_1:2716359-2716378 None:intergenic 45.0%
CTGCGATAAAGCTCTTTGGA+AGG + chr8_1:2716357-2716376 Msa1172610:CDS 45.0%
GAGATGAAGAGTCATTGGCA+GGG - chr8_1:2716409-2716428 None:intergenic 45.0%
AGAGGGAGATGAAGAGTCAT+TGG - chr8_1:2716414-2716433 None:intergenic 45.0%
GAATTCTGGTGGAGAAGAAG+AGG - chr8_1:2716432-2716451 None:intergenic 45.0%
ATTGCAGAGGTGAATTCTGG+TGG - chr8_1:2716443-2716462 None:intergenic 45.0%
GTGGTTCCCATCAGTGAAAT+TGG + chr8_1:2716750-2716769 Msa1172610:intron 45.0%
GAGAGCTCTTAAATCCTCAG+TGG - chr8_1:2717663-2717682 None:intergenic 45.0%
GTTTCAGCTGATGGAGTCTT+AGG - chr8_1:2717716-2717735 None:intergenic 45.0%
GAATTCTCGGTTTCAGCTGA+TGG - chr8_1:2717725-2717744 None:intergenic 45.0%
! TCTTACAAAAATGACGGGGC+TGG - chr8_1:2717895-2717914 None:intergenic 45.0%
TGTCAAAGATACTGGACTGC+AGG + chr8_1:2717917-2717936 Msa1172610:CDS 45.0%
AGAAATGTTCCTGTTGGAGC+TGG + chr8_1:2717950-2717969 Msa1172610:CDS 45.0%
!! GAAGCCATGGTGTTACAAAG+CGG - chr8_1:2718112-2718131 None:intergenic 45.0%
TCAGATAGAAAAGGCCACAC+CGG + chr8_1:2718256-2718275 Msa1172610:CDS 45.0%
ATCTACCAACCCATTTGTGC+CGG - chr8_1:2718278-2718297 None:intergenic 45.0%
GGAATATGTTGCAACTGAGG+AGG - chr8_1:2718319-2718338 None:intergenic 45.0%
GGATAAGGCAAAAAGGGACT+TGG - chr8_1:2718340-2718359 None:intergenic 45.0%
! GTCCCTTTTTGCCTTATCCA+TGG + chr8_1:2718341-2718360 Msa1172610:CDS 45.0%
! TTTGGTGGACAAAAGGTAGG+AGG - chr8_1:2718382-2718401 None:intergenic 45.0%
CAATATGCAGGTGGAGTTAC+TGG - chr8_1:2718427-2718446 None:intergenic 45.0%
CAGTAACTCCACCTGCATAT+TGG + chr8_1:2718425-2718444 Msa1172610:CDS 45.0%
GTAACTCCACCTGCATATTG+GGG + chr8_1:2718427-2718446 Msa1172610:CDS 45.0%
ATACAACCCCAATATGCAGG+TGG - chr8_1:2718436-2718455 None:intergenic 45.0%
CATGGTATATTCCATGGAGG+TGG - chr8_1:2718460-2718479 None:intergenic 45.0%
TTGAGTGTTTCCCCAAAGTC+GGG - chr8_1:2718537-2718556 None:intergenic 45.0%
CTTGAGTGTTTCCCCAAAGT+CGG - chr8_1:2718538-2718557 None:intergenic 45.0%
! GACTTTGGGGAAACACTCAA+GGG + chr8_1:2718537-2718556 Msa1172610:CDS 45.0%
AACTCCTTGCAGCTTCACTT+GGG - chr8_1:2718669-2718688 None:intergenic 45.0%
AAGCTGCAAGGAGTTCATTG+TGG + chr8_1:2718674-2718693 Msa1172610:CDS 45.0%
! AATGGAGGAGGCATGTTCAA+TGG + chr8_1:2718736-2718755 Msa1172610:CDS 45.0%
TAGGACTCTTGCATGGAGTT+TGG - chr8_1:2718992-2719011 None:intergenic 45.0%
AAACTCCATGCAAGAGTCCT+AGG + chr8_1:2718991-2719010 Msa1172610:three_prime_UTR 45.0%
AAACACCTGTTCAGTTAGGC+AGG - chr8_1:2719067-2719086 None:intergenic 45.0%
GCAGAAACACCTGTTCAGTT+AGG - chr8_1:2719071-2719090 None:intergenic 45.0%
!!! TAATTTGTATAAAAAAAAAA+GGG - chr8_1:2716195-2716214 None:intergenic 5.0%
!!! TTAATTTGTATAAAAAAAAA+AGG - chr8_1:2716196-2716215 None:intergenic 5.0%
!! ATAATATTTAATATATTATG+TGG + chr8_1:2716806-2716825 Msa1172610:intron 5.0%
GACCCTGCGATAAAGCTCTT+TGG + chr8_1:2716353-2716372 Msa1172610:CDS 50.0%
GGGATGATCAGTGGAAGAAG+CGG - chr8_1:2716389-2716408 None:intergenic 50.0%
TCATTGGCAGGGATGATCAG+TGG - chr8_1:2716398-2716417 None:intergenic 50.0%
GGAGATGAAGAGTCATTGGC+AGG - chr8_1:2716410-2716429 None:intergenic 50.0%
AACTGAGGTACGTGCCATGA+AGG + chr8_1:2716472-2716491 Msa1172610:intron 50.0%
!! GGTTGGTGAATTCACACCAG+AGG - chr8_1:2717224-2717243 None:intergenic 50.0%
!! ATCCTCAGTGGTTTGTTGCG+AGG - chr8_1:2717651-2717670 None:intergenic 50.0%
TCAGCTGATGGAGTCTTAGG+AGG - chr8_1:2717713-2717732 None:intergenic 50.0%
TGTCCATGCTATTGCATCGC+GGG - chr8_1:2717838-2717857 None:intergenic 50.0%
GTGTCCATGCTATTGCATCG+CGG - chr8_1:2717839-2717858 None:intergenic 50.0%
CAAAGATACTGGACTGCAGG+AGG + chr8_1:2717920-2717939 Msa1172610:CDS 50.0%
TCCTCCGCTTTGTAACACCA+TGG + chr8_1:2718105-2718124 Msa1172610:CDS 50.0%
!! GGAGGCATTGCAGAATTCCA+TGG - chr8_1:2718361-2718380 None:intergenic 50.0%
GGCATACAACCCCAATATGC+AGG - chr8_1:2718439-2718458 None:intergenic 50.0%
TCTCAGTTCTGTCCCGACTT+TGG + chr8_1:2718522-2718541 Msa1172610:CDS 50.0%
CTCAGTTCTGTCCCGACTTT+GGG + chr8_1:2718523-2718542 Msa1172610:CDS 50.0%
TCAGTTCTGTCCCGACTTTG+GGG + chr8_1:2718524-2718543 Msa1172610:CDS 50.0%
! CGACTTTGGGGAAACACTCA+AGG + chr8_1:2718536-2718555 Msa1172610:CDS 50.0%
TTGGGGAAACACTCAAGGGA+TGG + chr8_1:2718541-2718560 Msa1172610:CDS 50.0%
ATGACCCAAGTGAAGCTGCA+AGG + chr8_1:2718662-2718681 Msa1172610:CDS 50.0%
GAACTCCTTGCAGCTTCACT+TGG - chr8_1:2718670-2718689 None:intergenic 50.0%
GCCAATTCTCTCAATGGAGG+AGG + chr8_1:2718724-2718743 Msa1172610:CDS 50.0%
GCCTCCTCCATTGAGAGAAT+TGG - chr8_1:2718728-2718747 None:intergenic 50.0%
GTTGTCCTAGGACTCTTGCA+TGG - chr8_1:2718999-2719018 None:intergenic 50.0%
GCTCAAGATAGCAGCTACTG+AGG - chr8_1:2719045-2719064 None:intergenic 50.0%
TTGAGCCTGCCTAACTGAAC+AGG + chr8_1:2719059-2719078 Msa1172610:three_prime_UTR 50.0%
AGCCTCGCAACAAACCACTG+AGG + chr8_1:2717646-2717665 Msa1172610:CDS 55.0%
ATGCTATTGCATCGCGGGCA+TGG - chr8_1:2717833-2717852 None:intergenic 55.0%
ATGCCCGCGATGCAATAGCA+TGG + chr8_1:2717832-2717851 Msa1172610:CDS 55.0%
!! GCCATGGTGTTACAAAGCGG+AGG - chr8_1:2718109-2718128 None:intergenic 55.0%
AAAGGCCACACCGGCACAAA+TGG + chr8_1:2718265-2718284 Msa1172610:CDS 55.0%
AAGGCCACACCGGCACAAAT+GGG + chr8_1:2718266-2718285 Msa1172610:CDS 55.0%
GGTGGACAAAAGGTAGGAGG+AGG - chr8_1:2718379-2718398 None:intergenic 55.0%
GCACTTCCTGGTGAGACACA+TGG - chr8_1:2718478-2718497 None:intergenic 55.0%
! GCAGGGTTGGCATACATCAG+CGG - chr8_1:2718808-2718827 None:intergenic 55.0%
GCTGATGTATGCCAACCCTG+CGG + chr8_1:2718807-2718826 Msa1172610:CDS 55.0%
! CCAACCCATTTGTGCCGGTG+TGG - chr8_1:2718273-2718292 None:intergenic 60.0%
CCACACCGGCACAAATGGGT+TGG + chr8_1:2718270-2718289 Msa1172610:CDS 60.0%
GGGGTTGTATGCCACCTCCA+TGG + chr8_1:2718446-2718465 Msa1172610:CDS 60.0%
! CCAACCCTGCGGCTTTATCG+CGG + chr8_1:2718818-2718837 Msa1172610:CDS 60.0%
GAGACCGCGATAAAGCCGCA+GGG - chr8_1:2718825-2718844 None:intergenic 60.0%
GCGGTCTCGTACCTTCCATG+AGG + chr8_1:2718837-2718856 Msa1172610:CDS 60.0%
TTGCGGCGACCAGCTCCAAC+AGG - chr8_1:2717962-2717981 None:intergenic 65.0%
CCGCGATAAAGCCGCAGGGT+TGG - chr8_1:2718821-2718840 None:intergenic 65.0%
CGAGACCGCGATAAAGCCGC+AGG - chr8_1:2718826-2718845 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 2716142 2719263 2716142 ID=Msa1172610;Name=Msa1172610
chr8_1 mRNA 2716142 2719263 2716142 ID=Msa1172610-mRNA-1;Parent=Msa1172610;Name=Msa1172610-mRNA-1;_AED=0.00;_eAED=0.00;_QI=196|1|1|1|1|1|2|396|467
chr8_1 exon 2716142 2716478 2716142 ID=Msa1172610-mRNA-1:exon:990;Parent=Msa1172610-mRNA-1
chr8_1 exon 2717605 2719263 2717605 ID=Msa1172610-mRNA-1:exon:991;Parent=Msa1172610-mRNA-1
chr8_1 five_prime_UTR 2716142 2716337 2716142 ID=Msa1172610-mRNA-1:five_prime_utr;Parent=Msa1172610-mRNA-1
chr8_1 CDS 2716338 2716478 2716338 ID=Msa1172610-mRNA-1:cds;Parent=Msa1172610-mRNA-1
chr8_1 CDS 2717605 2718867 2717605 ID=Msa1172610-mRNA-1:cds;Parent=Msa1172610-mRNA-1
chr8_1 three_prime_UTR 2718868 2719263 2718868 ID=Msa1172610-mRNA-1:three_prime_utr;Parent=Msa1172610-mRNA-1
Gene Sequence

>Msa1172610

ATGTCAGAGGTAAAAGACCCTGCGATAAAGCTCTTTGGAAGGACAATTCCGCTTCTTCCACTGATCATCCCTGCCAATGACTCTTCATCTCCCTCTTCTTCTCCACCAGAATTCACCTCTGCAATACAGCATGAAACTGAGGAACCATCAAGGAAAGAACTAATTACAGCACAAGACGATGGAGCCTCGCAACAAACCACTGAGGATTTAAGAGCTCTCACAACATCTTCAGTTGTACTTGAGAATCCTCCTAAGACTCCATCAGCTGAAACCGAGAATTCGTTATTGAAATCTTCTACAAATGTAGAACAAAGCGAGACTAGTGTTTCCGAAGAAAAAACTCTGAAGAAACCCGACAAAATAATTCCATGCCCGCGATGCAATAGCATGGACACCAAATTTTGTTACTTCAACAATTACAATGTCAACCAGCCCCGTCATTTTTGTAAGAAATGTCAAAGATACTGGACTGCAGGAGGAACAATGAGAAATGTTCCTGTTGGAGCTGGTCGCCGCAAGAACAAAAACTTATCTAGCTCGCATTATCGACATTTGATAATTCCAGAGGGTGCTAAACTTAATTCCCCTAATGGATTACATAGTTTGGGAAATGGAGCAGCTGTTTTGACGTTTGATTCAAATCCTCCGCTTTGTAACACCATGGCTTCTGTATTGAACATCGCTGAAAGAACTCAAAATTGTGTGTCAAATGGTTTTCATCATGCAAGTTCGTATAGTAGGGAAAATGATCACTCAATTGGAGTTGGAGTATCAGTTACAACATCAAATTCATCAGATAGAAAAGGCCACACCGGCACAAATGGGTTGGTAGATAAAGGAGTTGAAGGTTTCCCTCCTCAGTTGCAACATATTCCAAGTCCCTTTTTGCCTTATCCATGGAATTCTGCAATGCCTCCTCCTACCTTTTGTCCACCAAACTATCCATTAGCATTCTATACTCCAGTAACTCCACCTGCATATTGGGGTTGTATGCCACCTCCATGGAATATACCATGTGTCTCACCAGGAAGTGCTTCTGTTAATCAAAGTGACTCTGCTCTCAGTTCTGTCCCGACTTTGGGGAAACACTCAAGGGATGGAAACATCATTACCTCAGTCAATTCACCAAAAGAAAAGCCTGAAAATGAACACAATAGCACTGAAAGCAGCGTTTTGATCCCAAAGACACTTAGATTTGATGACCCAAGTGAAGCTGCAAGGAGTTCATTGTGGTCAAAGCTTGGGATCAATAATGACAAAGCCAATTCTCTCAATGGAGGAGGCATGTTCAATGGATTTCAGTCCAAGGTAAAGGACATGAATCACACGGTTGAAACGTCACCGCTGATGTATGCCAACCCTGCGGCTTTATCGCGGTCTCGTACCTTCCATGAGGAAACCTAA
Protein sequence

>Msa1172610

MSEVKDPAIKLFGRTIPLLPLIIPANDSSSPSSSPPEFTSAIQHETEEPSRKELITAQDDGASQQTTEDLRALTTSSVVLENPPKTPSAETENSLLKSSTNVEQSETSVSEEKTLKKPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSSSHYRHLIIPEGAKLNSPNGLHSLGNGAAVLTFDSNPPLCNTMASVLNIAERTQNCVSNGFHHASSYSRENDHSIGVGVSVTTSNSSDRKGHTGTNGLVDKGVEGFPPQLQHIPSPFLPYPWNSAMPPPTFCPPNYPLAFYTPVTPPAYWGCMPPPWNIPCVSPGSASVNQSDSALSSVPTLGKHSRDGNIITSVNSPKEKPENEHNSTESSVLIPKTLRFDDPSEAARSSLWSKLGINNDKANSLNGGGMFNGFQSKVKDMNHTVETSPLMYANPAALSRSRTFHEET*