AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0692240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692240 MtrunA17_Chr4g0042481 95.075 467 21 1 1 467 1 465 0.0 894
Msa0692240 MtrunA17_Chr6g0453321 44.071 506 229 18 1 465 1 493 7.15e-115 347
Msa0692240 MtrunA17_Chr7g0217581 43.461 497 236 16 1 465 98 581 8.66e-106 326
Msa0692240 MtrunA17_Chr3g0092111 43.838 495 216 20 1 465 1 463 7.65e-105 320
Msa0692240 MtrunA17_Chr5g0417601 41.237 485 151 17 6 465 4 379 8.84e-87 270
Msa0692240 MtrunA17_Chr5g0417551 38.320 488 151 17 6 465 4 369 1.99e-73 236
Msa0692240 MtrunA17_Chr5g0417561 36.605 489 152 18 6 466 4 362 6.46e-71 229
Msa0692240 MtrunA17_Chr8g0355261 33.537 492 231 19 5 465 11 437 3.76e-62 208
Msa0692240 MtrunA17_Chr7g0254161 32.787 488 237 17 1 465 3 422 4.12e-59 200
Msa0692240 MtrunA17_Chr5g0417571 49.528 212 70 8 4 185 2 206 1.70e-50 174
Msa0692240 MtrunA17_Chr6g0460731 34.056 323 142 11 4 306 9 280 1.32e-42 154
Msa0692240 MtrunA17_Chr6g0460721 46.857 175 76 4 85 243 51 224 8.10e-42 151
Msa0692240 MtrunA17_Chr2g0283811 86.667 60 8 0 116 175 41 100 9.20e-34 124
Msa0692240 MtrunA17_Chr3g0127201 61.765 68 26 0 108 175 13 80 8.85e-26 106
Msa0692240 MtrunA17_Chr8g0346551 65.625 64 22 0 117 180 19 82 2.23e-25 105
Msa0692240 MtrunA17_Chr8g0367161 52.381 84 40 0 97 180 7 90 4.20e-25 105
Msa0692240 MtrunA17_Chr8g0374111 63.934 61 22 0 122 182 29 89 1.01e-24 102
Msa0692240 MtrunA17_Chr2g0326001 64.615 65 23 0 111 175 29 93 2.09e-24 102
Msa0692240 MtrunA17_Chr8g0374251 66.102 59 20 0 122 180 68 126 2.74e-24 103
Msa0692240 MtrunA17_Chr4g0010151 67.241 58 19 0 118 175 78 135 3.10e-24 103
Msa0692240 MtrunA17_Chr1g0188851 57.971 69 29 0 106 174 27 95 7.39e-24 101
Msa0692240 MtrunA17_Chr4g0047001 74.074 54 14 0 124 177 57 110 1.19e-23 102
Msa0692240 MtrunA17_Chr2g0308011 73.469 49 13 0 122 170 37 85 2.83e-23 97.4
Msa0692240 MtrunA17_Chr1g0177251 53.333 90 40 2 117 204 6 95 4.32e-23 99.0
Msa0692240 MtrunA17_Chr4g0031411 58.571 70 26 1 108 174 58 127 4.40e-23 99.8
Msa0692240 MtrunA17_Chr2g0328021 68.519 54 17 0 122 175 62 115 5.14e-23 98.6
Msa0692240 MtrunA17_Chr4g0061761 67.925 53 17 0 120 172 38 90 5.55e-23 99.4
Msa0692240 MtrunA17_Chr8g0341671 62.903 62 23 0 122 183 20 81 6.58e-23 96.7
Msa0692240 MtrunA17_Chr4g0030051 56.000 75 29 1 104 174 19 93 2.56e-22 96.7
Msa0692240 MtrunA17_Chr7g0237921 71.154 52 15 0 124 175 78 129 2.72e-22 97.8
Msa0692240 MtrunA17_Chr7g0223311 72.549 51 14 0 124 174 79 129 6.54e-22 97.1
Msa0692240 MtrunA17_Chr2g0282051 67.857 56 17 1 122 177 46 100 7.34e-22 95.1
Msa0692240 MtrunA17_Chr3g0126201 59.155 71 27 2 107 175 34 104 7.87e-22 96.3
Msa0692240 MtrunA17_Chr4g0047761 70.370 54 15 1 124 177 74 126 1.37e-21 95.1
Msa0692240 MtrunA17_Chr5g0411951 63.636 55 20 0 118 172 39 93 1.47e-21 95.5
Msa0692240 MtrunA17_Chr2g0282511 71.429 49 14 0 122 170 45 93 1.53e-21 95.1
Msa0692240 MtrunA17_Chr3g0117601 61.290 62 23 1 112 172 50 111 2.61e-21 94.7
Msa0692240 MtrunA17_Chr2g0282441 70.000 50 15 0 124 173 27 76 2.87e-21 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692240 AT3G47500.1 40.408 490 224 17 1 466 2 447 7.07e-85 268
Msa0692240 AT5G39660.3 37.403 516 208 17 4 465 1 455 2.69e-80 256
Msa0692240 AT5G39660.1 37.403 516 208 17 4 465 1 455 2.69e-80 256
Msa0692240 AT5G39660.2 37.403 516 208 17 4 465 1 455 2.69e-80 256
Msa0692240 AT5G62430.1 41.361 382 111 15 89 466 25 297 1.45e-64 211
Msa0692240 AT1G69570.1 32.985 479 223 17 1 465 1 395 5.80e-48 170
Msa0692240 AT1G26790.1 32.265 468 210 17 1 465 7 370 3.71e-47 167
Msa0692240 AT1G29160.1 88.333 60 7 0 116 175 56 115 2.44e-35 129
Msa0692240 AT2G34140.1 52.727 110 52 0 66 175 2 111 4.80e-34 126
Msa0692240 AT5G60200.1 37.931 174 99 4 118 288 51 218 2.66e-27 110
Msa0692240 AT4G24060.1 61.538 65 25 0 111 175 42 106 2.66e-24 103
Msa0692240 AT1G51700.1 53.086 81 31 1 100 180 18 91 2.71e-24 100
Msa0692240 AT3G55370.1 43.243 111 49 2 118 217 72 179 3.86e-24 103
Msa0692240 AT3G55370.2 43.243 111 49 2 118 217 72 179 4.56e-24 103
Msa0692240 AT5G60850.1 72.222 54 15 0 122 175 51 104 4.76e-24 102
Msa0692240 AT2G28810.2 46.078 102 49 2 78 173 27 128 5.06e-24 102
Msa0692240 AT3G55370.3 67.241 58 19 0 118 175 117 174 5.85e-24 103
Msa0692240 AT3G50410.1 68.421 57 18 0 122 178 30 86 6.76e-24 100
Msa0692240 AT2G28810.1 46.078 102 49 2 78 173 44 145 7.32e-24 102
Msa0692240 AT1G21340.1 48.936 94 37 3 124 216 40 123 9.39e-24 100
Msa0692240 AT2G37590.1 57.576 66 28 0 110 175 77 142 1.20e-23 101
Msa0692240 AT1G64620.1 55.128 78 34 1 93 170 21 97 1.52e-23 102
Msa0692240 AT3G61850.2 60.938 64 25 0 112 175 52 115 1.83e-23 100
Msa0692240 AT3G61850.3 60.938 64 25 0 112 175 52 115 1.83e-23 100
Msa0692240 AT3G61850.1 58.824 68 28 0 112 179 64 131 2.22e-23 100
Msa0692240 AT3G61850.5 60.938 64 25 0 112 175 52 115 3.15e-23 100
Msa0692240 AT3G61850.4 58.824 68 28 0 112 179 64 131 3.59e-23 100
Msa0692240 AT3G21270.1 71.698 53 15 0 122 174 29 81 3.94e-23 97.4
Msa0692240 AT2G28510.1 67.797 59 19 0 124 182 50 108 6.96e-23 98.6
Msa0692240 AT1G07640.1 69.811 53 16 0 122 174 21 73 7.96e-23 98.2
Msa0692240 AT3G45610.1 57.143 63 27 0 118 180 36 98 8.58e-23 97.4
Msa0692240 AT1G28310.1 70.370 54 16 0 122 175 27 80 9.50e-23 99.0
Msa0692240 AT1G07640.2 69.811 53 16 0 122 174 77 129 1.30e-22 99.0
Msa0692240 AT1G28310.2 47.475 99 43 2 79 175 13 104 1.55e-22 98.6
Msa0692240 AT1G07640.3 69.811 53 16 0 122 174 85 137 1.65e-22 98.6
Msa0692240 AT5G02460.1 57.746 71 27 1 108 175 78 148 1.86e-22 99.4
Msa0692240 AT5G66940.1 60.000 60 24 0 122 181 32 91 2.47e-22 95.5
Msa0692240 AT5G65590.1 54.930 71 32 0 105 175 24 94 3.36e-22 97.4
Msa0692240 AT4G00940.1 56.757 74 27 1 109 177 50 123 4.54e-22 96.7
Msa0692240 AT4G00940.3 56.757 74 27 1 109 177 50 123 4.54e-22 96.7
Msa0692240 AT4G00940.2 56.757 74 27 1 109 177 50 123 4.54e-22 96.7
Msa0692240 AT1G47655.1 71.429 49 14 0 122 170 29 77 7.53e-22 94.0
Msa0692240 AT3G52440.2 48.936 94 40 3 93 180 11 102 9.83e-22 95.1
Msa0692240 AT4G38000.1 62.500 56 20 1 121 176 40 94 2.77e-21 93.2
Msa0692240 AT3G52440.1 64.912 57 20 0 124 180 27 83 2.91e-21 93.2
Msa0692240 AT2G46590.1 60.656 61 22 1 109 169 57 115 3.50e-21 95.1
Msa0692240 AT2G46590.2 60.656 61 22 1 109 169 69 127 3.76e-21 95.1
Msa0692240 AT4G21050.1 43.564 101 55 1 115 213 17 117 6.50e-21 91.3
Msa0692240 AT5G62940.1 69.388 49 15 0 124 172 75 123 9.90e-20 90.9
Msa0692240 AT4G21040.1 47.297 74 37 1 102 175 7 78 1.15e-17 82.4
Msa0692240 AT4G21080.1 57.692 52 22 0 124 175 27 78 1.55e-16 79.7
Msa0692240 AT4G21030.1 59.091 44 18 0 124 167 23 66 4.09e-11 62.8

Find 141 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGTTCTGTCCCGACTTT+GGG 0.197222 4_4:+60595743 Msa0692240:CDS
CCCTAATGGATTACATAGTT+TGG 0.197772 4_4:+60595268 Msa0692240:CDS
TTTCAATGCAATTCACAATT+AGG 0.220175 4_4:-60596083 None:intergenic
GTAATTAGTTCTTTCCTTGA+TGG 0.235655 4_4:-60594828 None:intergenic
CCAAACTATGTAATCCATTA+GGG 0.240822 4_4:-60595268 None:intergenic
AGTAACTCCACCTGCATATT+GGG 0.244547 4_4:+60595646 Msa0692240:CDS
TCATCAAATCTAAGTGTCTT+TGG 0.276528 4_4:-60595863 None:intergenic
CAATATGCAGGTGGAGTTAC+TGG 0.285499 4_4:-60595644 None:intergenic
TTTGAGACTAACATTATTGT+AGG 0.298707 4_4:-60596463 None:intergenic
GTAAGAAATGTCAAAGATAC+TGG 0.307217 4_4:+60595129 Msa0692240:CDS
ATTGTTGAAGTAACAAAATT+TGG 0.309323 4_4:-60595078 None:intergenic
CCCAAACTATGTAATCCATT+AGG 0.311917 4_4:-60595269 None:intergenic
ATTCCATGGATAAGGCAAAA+AGG 0.312423 4_4:-60595564 None:intergenic
CAGTAACTCCACCTGCATAT+TGG 0.313645 4_4:+60595645 Msa0692240:CDS
GCTAAACTTAATTCCCCTAA+TGG 0.325757 4_4:+60595254 Msa0692240:CDS
ACAATAATGTTAGTCTTCAT+TGG 0.332215 4_4:+60596402 Msa0692240:three_prime_UTR
GCCTCCTCCATTGAGAGAAT+TGG 0.332869 4_4:-60595945 None:intergenic
CCTAATGGATTACATAGTTT+GGG 0.335592 4_4:+60595269 Msa0692240:CDS
TAGAATGCTAATGGATAGTT+TGG 0.337503 4_4:-60595617 None:intergenic
GTTTCAGCTGATGGAGTCTT+AGG 0.353075 4_4:-60594933 None:intergenic
TAGGACTCTTGCATGGAGTT+TGG 0.359745 4_4:-60596209 None:intergenic
AAGAACTTGTCAGCAGAATA+AGG 0.366367 4_4:-60596152 None:intergenic
ATCATGCAAGTTCGTATAGT+AGG 0.370122 4_4:+60595402 Msa0692240:CDS
TCTCAGTTCTGTCCCGACTT+TGG 0.371870 4_4:+60595742 Msa0692240:CDS
AAAGGCCACACCGGCACAAA+TGG 0.375943 4_4:+60595485 Msa0692240:CDS
GACCCTGCGATAAAGCTCTT+TGG 0.376470 4_4:+60593566 Msa0692240:CDS
GGGGATATTATATAGTTTGA+TGG 0.384459 4_4:-60593383 None:intergenic
ACAAATGGGTTGGTAGATAA+AGG 0.391250 4_4:+60595500 Msa0692240:CDS
AGGGAAAATGATCACTCAAT+TGG 0.410885 4_4:+60595422 Msa0692240:CDS
CATCAAATCTAAGTGTCTTT+GGG 0.411049 4_4:-60595862 None:intergenic
TGATTAACAGAAGCACTTCC+TGG 0.414702 4_4:-60595707 None:intergenic
GAACTCCTTGCAGCTTCACT+TGG 0.415659 4_4:-60595887 None:intergenic
AGAGGGAGATGAAGAGTCAT+TGG 0.419013 4_4:-60593624 None:intergenic
AGATTTCAATAACGAATTCT+CGG 0.425048 4_4:-60594955 None:intergenic
TTGGTAGATAAAGGAGTTGA+AGG 0.425049 4_4:+60595509 Msa0692240:CDS
GGATTACATAGTTTGGGAAA+TGG 0.427090 4_4:+60595275 Msa0692240:CDS
ACTCAAAATTGTGTGTCAAA+TGG 0.434475 4_4:+60595374 Msa0692240:CDS
CAGATTTGATAATATGTTGT+TGG 0.444254 4_4:+60596313 Msa0692240:three_prime_UTR
TGTATTGCAGAGGTGAATTC+TGG 0.445396 4_4:-60593656 None:intergenic
TTGAGCCTGCCTAACTGAAC+AGG 0.455235 4_4:+60596279 Msa0692240:three_prime_UTR
AGTTCATTGTGGTCAAAGCT+TGG 0.456620 4_4:+60595905 Msa0692240:CDS
TTGAGTGTTTCCCCAAAGTC+GGG 0.458025 4_4:-60595754 None:intergenic
ACTGGAGTATAGAATGCTAA+TGG 0.468260 4_4:-60595626 None:intergenic
TGATCTTTATTATTCTCAAA+AGG 0.468272 4_4:+60596174 Msa0692240:three_prime_UTR
GTGATTCATGTCCTTTACCT+TGG 0.468280 4_4:-60595987 None:intergenic
GTTCATTGTGGTCAAAGCTT+GGG 0.469560 4_4:+60595906 Msa0692240:CDS
GACAAAGCCAATTCTCTCAA+TGG 0.470994 4_4:+60595938 Msa0692240:CDS
TGGATAGTTTGGTGGACAAA+AGG 0.471372 4_4:-60595606 None:intergenic
GGAGATGAAGAGTCATTGGC+AGG 0.477484 4_4:-60593620 None:intergenic
AATGGAGGAGGCATGTTCAA+TGG 0.477902 4_4:+60595956 Msa0692240:CDS
GAATTCTCGGTTTCAGCTGA+TGG 0.478162 4_4:-60594942 None:intergenic
ATGCTATTGCATCGCGGGCA+TGG 0.486276 4_4:-60595050 None:intergenic
GAATTCTGGTGGAGAAGAAG+AGG 0.486452 4_4:-60593642 None:intergenic
ATTGCAGAATTCCATGGATA+AGG 0.486834 4_4:-60595572 None:intergenic
AAACTCCATGCAAGAGTCCT+AGG 0.487050 4_4:+60596211 Msa0692240:three_prime_UTR
GAATTAAGTTTAGCACCCTC+TGG 0.491397 4_4:-60595245 None:intergenic
AGATTTGATAATATGTTGTT+GGG 0.494242 4_4:+60596314 Msa0692240:three_prime_UTR
TTGCGGCGACCAGCTCCAAC+AGG 0.495368 4_4:-60595179 None:intergenic
AAGTACAACACTGTTGTCCT+AGG 0.502288 4_4:-60596228 None:intergenic
CCGCGATAAAGCCGCAGGGT+TGG 0.504467 4_4:-60596038 None:intergenic
AATGATCACTCAATTGGAGT+TGG 0.507132 4_4:+60595428 Msa0692240:CDS
AACTCCTTGCAGCTTCACTT+GGG 0.509294 4_4:-60595886 None:intergenic
TCAAATTCATCAGATAGAAA+AGG 0.510956 4_4:+60595467 Msa0692240:CDS
AAGGCCACACCGGCACAAAT+GGG 0.516822 4_4:+60595486 Msa0692240:CDS
GGCATACAACCCCAATATGC+AGG 0.516977 4_4:-60595656 None:intergenic
AAACACCTGTTCAGTTAGGC+AGG 0.517381 4_4:-60596284 None:intergenic
TGGATTTCAGTCCAAGGTAA+AGG 0.518064 4_4:+60595976 Msa0692240:CDS
CAATTAGGTTTCCTCATGGA+AGG 0.522646 4_4:-60596068 None:intergenic
CTTGAGTGTTTCCCCAAAGT+CGG 0.525777 4_4:-60595755 None:intergenic
TGTCAAAGATACTGGACTGC+AGG 0.528621 4_4:+60595137 Msa0692240:CDS
ATCTACCAACCCATTTGTGC+CGG 0.532135 4_4:-60595495 None:intergenic
TGTCCATGCTATTGCATCGC+GGG 0.535971 4_4:-60595055 None:intergenic
CGAGACCGCGATAAAGCCGC+AGG 0.536771 4_4:-60596043 None:intergenic
TTTACCTCTGACATTTCTGT+AGG 0.537948 4_4:-60593542 None:intergenic
CGACTTTGGGGAAACACTCA+AGG 0.540052 4_4:+60595756 Msa0692240:CDS
TCATGCAAGTTCGTATAGTA+GGG 0.541345 4_4:+60595403 Msa0692240:CDS
TTCACAATTAGGTTTCCTCA+TGG 0.553418 4_4:-60596072 None:intergenic
ATCCTCAGTGGTTTGTTGCG+AGG 0.554021 4_4:-60594868 None:intergenic
AATGCTAATGGATAGTTTGG+TGG 0.554354 4_4:-60595614 None:intergenic
GAGACACATGGTATATTCCA+TGG 0.554398 4_4:-60595683 None:intergenic
GCAGAAACACCTGTTCAGTT+AGG 0.556152 4_4:-60596288 None:intergenic
CTTCCAAAGAGCTTTATCGC+AGG 0.556819 4_4:-60593569 None:intergenic
ACAATGAGAAATGTTCCTGT+TGG 0.557862 4_4:+60595164 Msa0692240:CDS
TCAGCTGATGGAGTCTTAGG+AGG 0.562404 4_4:-60594930 None:intergenic
TAGTTTGGTGGACAAAAGGT+AGG 0.562573 4_4:-60595602 None:intergenic
AATTCTGGTGGAGAAGAAGA+GGG 0.562827 4_4:-60593641 None:intergenic
GCCAATTCTCTCAATGGAGG+AGG 0.563194 4_4:+60595944 Msa0692240:CDS
TTCCAAAGAGCTTTATCGCA+GGG 0.567023 4_4:-60593568 None:intergenic
GAATATGTTGCAACTGAGGA+GGG 0.570048 4_4:-60595535 None:intergenic
GGAGGCATTGCAGAATTCCA+TGG 0.572249 4_4:-60595578 None:intergenic
TTTGGTGGACAAAAGGTAGG+AGG 0.574664 4_4:-60595599 None:intergenic
GGAATATGTTGCAACTGAGG+AGG 0.574863 4_4:-60595536 None:intergenic
AGAAATGTTCCTGTTGGAGC+TGG 0.575931 4_4:+60595170 Msa0692240:CDS
CTTGGAATATGTTGCAACTG+AGG 0.581444 4_4:-60595539 None:intergenic
TTGGGGAAACACTCAAGGGA+TGG 0.586619 4_4:+60595761 Msa0692240:CDS
GGGGTTGTATGCCACCTCCA+TGG 0.588317 4_4:+60595666 Msa0692240:CDS
TGAGTGAAAATATTATGAGA+TGG 0.591762 4_4:-60593484 None:intergenic
CATGGTATATTCCATGGAGG+TGG 0.595774 4_4:-60595677 None:intergenic
GTTGTCCTAGGACTCTTGCA+TGG 0.602070 4_4:-60596216 None:intergenic
GGTGGACAAAAGGTAGGAGG+AGG 0.603448 4_4:-60595596 None:intergenic
CCAACCCATTTGTGCCGGTG+TGG 0.605033 4_4:-60595490 None:intergenic
CGACATTTGATAATTCCAGA+GGG 0.606272 4_4:+60595230 Msa0692240:CDS
TCAGTTCTGTCCCGACTTTG+GGG 0.606745 4_4:+60595744 Msa0692240:CDS
CCACACCGGCACAAATGGGT+TGG 0.611096 4_4:+60595490 Msa0692240:CDS
GTAACTCCACCTGCATATTG+GGG 0.611433 4_4:+60595647 Msa0692240:CDS
CAAAGATACTGGACTGCAGG+AGG 0.611856 4_4:+60595140 Msa0692240:CDS
GTTCAATGGATTTCAGTCCA+AGG 0.615097 4_4:+60595970 Msa0692240:CDS
CTGCGATAAAGCTCTTTGGA+AGG 0.619750 4_4:+60593570 Msa0692240:CDS
AATATACCATGTGTCTCACC+AGG 0.620306 4_4:+60595689 Msa0692240:CDS
GATGTTCAATACAGAAGCCA+TGG 0.623380 4_4:-60595342 None:intergenic
GAGATGAAGAGTCATTGGCA+GGG 0.625244 4_4:-60593619 None:intergenic
TCGACATTTGATAATTCCAG+AGG 0.625580 4_4:+60595229 Msa0692240:CDS
TCATTGGCAGGGATGATCAG+TGG 0.630276 4_4:-60593608 None:intergenic
GCACTTCCTGGTGAGACACA+TGG 0.630353 4_4:-60595695 None:intergenic
AGTTTCATGCTGTATTGCAG+AGG 0.631365 4_4:-60593666 None:intergenic
GACTTTGGGGAAACACTCAA+GGG 0.631484 4_4:+60595757 Msa0692240:CDS
ATGACCCAAGTGAAGCTGCA+AGG 0.632038 4_4:+60595882 Msa0692240:CDS
GTGTCCATGCTATTGCATCG+CGG 0.634519 4_4:-60595056 None:intergenic
ATGCCCGCGATGCAATAGCA+TGG 0.635421 4_4:+60595052 Msa0692240:CDS
CCAACCCTGCGGCTTTATCG+CGG 0.637960 4_4:+60596038 Msa0692240:CDS
GGGATGATCAGTGGAAGAAG+CGG 0.640321 4_4:-60593599 None:intergenic
GAGAGCTCTTAAATCCTCAG+TGG 0.645204 4_4:-60594880 None:intergenic
GCAGGGTTGGCATACATCAG+CGG 0.645757 4_4:-60596025 None:intergenic
GCTCAAGATAGCAGCTACTG+AGG 0.646149 4_4:-60596262 None:intergenic
CAAACTATGTAATCCATTAG+GGG 0.651674 4_4:-60595267 None:intergenic
TCAGATAGAAAAGGCCACAC+CGG 0.654081 4_4:+60595476 Msa0692240:CDS
CTAATTACAGCACAAGACGA+TGG 0.658149 4_4:+60594843 Msa0692240:CDS
AAAGCCAATTCTCTCAATGG+AGG 0.662101 4_4:+60595941 Msa0692240:CDS
TGCAATACAGCATGAAACTG+AGG 0.664237 4_4:+60593670 Msa0692240:CDS
GCCATGGTGTTACAAAGCGG+AGG 0.666467 4_4:-60595326 None:intergenic
ATTGCAGAGGTGAATTCTGG+TGG 0.675104 4_4:-60593653 None:intergenic
TCCTCCGCTTTGTAACACCA+TGG 0.687107 4_4:+60595325 Msa0692240:CDS
AAGCTGCAAGGAGTTCATTG+TGG 0.697169 4_4:+60595894 Msa0692240:CDS
GGTAAAGGACATGAATCACA+CGG 0.721107 4_4:+60595991 Msa0692240:CDS
ATACAACCCCAATATGCAGG+TGG 0.724114 4_4:-60595653 None:intergenic
GAAGCCATGGTGTTACAAAG+CGG 0.731105 4_4:-60595329 None:intergenic
GAGACCGCGATAAAGCCGCA+GGG 0.731318 4_4:-60596042 None:intergenic
GCGGTCTCGTACCTTCCATG+AGG 0.732623 4_4:+60596057 Msa0692240:CDS
ACACATGGTATATTCCATGG+AGG 0.757531 4_4:-60595680 None:intergenic
GCTGATGTATGCCAACCCTG+CGG 0.770728 4_4:+60596027 Msa0692240:CDS
AGCCTCGCAACAAACCACTG+AGG 0.809905 4_4:+60594866 Msa0692240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGTATAAAAAAAAAAAAG+GGG - chr4_4:60593405-60593424 None:intergenic 10.0%
!! ATTTATATAAAAATTGTTCA+TGG + chr4_4:60594317-60594336 Msa0692240:intron 10.0%
!!! CAATTATCAATTTTTTGTTT+TGG + chr4_4:60594068-60594087 Msa0692240:intron 15.0%
!! TATATAAAAATAGCAGAAAA+GGG - chr4_4:60594555-60594574 None:intergenic 15.0%
!! TTATATAAAAATAGCAGAAA+AGG - chr4_4:60594556-60594575 None:intergenic 15.0%
!!! TTAATCATATTCATTGTTTT+AGG + chr4_4:60594803-60594822 Msa0692240:intron 15.0%
!! ATTAACTGCTTAAGAAAAAT+GGG - chr4_4:60593783-60593802 None:intergenic 20.0%
!! AATTAACTGCTTAAGAAAAA+TGG - chr4_4:60593784-60593803 None:intergenic 20.0%
!! TTAAGCAGTTAATTGTTAAT+GGG + chr4_4:60593790-60593809 Msa0692240:intron 20.0%
!!! TTGAATCTTTTATTAAGTTG+TGG + chr4_4:60593926-60593945 Msa0692240:intron 20.0%
!! TAAAACTAATCTATGGTATT+TGG - chr4_4:60594366-60594385 None:intergenic 20.0%
!!! AATACCATAGATTAGTTTTA+TGG + chr4_4:60594366-60594385 Msa0692240:intron 20.0%
!!! TTTGTTTTTTACTTCTATTG+AGG + chr4_4:60594719-60594738 Msa0692240:intron 20.0%
!! ATTGTTGAAGTAACAAAATT+TGG - chr4_4:60595081-60595100 None:intergenic 20.0%
!! TGATCTTTATTATTCTCAAA+AGG + chr4_4:60596174-60596193 Msa0692240:three_prime_UTR 20.0%
!!! AGATTTGATAATATGTTGTT+GGG + chr4_4:60596314-60596333 Msa0692240:three_prime_UTR 20.0%
! TGAGTGAAAATATTATGAGA+TGG - chr4_4:60593487-60593506 None:intergenic 25.0%
! CTTAAGCAGTTAATTGTTAA+TGG + chr4_4:60593789-60593808 Msa0692240:intron 25.0%
!! TTTTGATGTCAATTGAATTG+AGG + chr4_4:60593830-60593849 Msa0692240:intron 25.0%
! AAATTGGATCGAATTTATTC+TGG + chr4_4:60593979-60593998 Msa0692240:intron 25.0%
! TAACCAAAAAACTTCAATCA+AGG - chr4_4:60594167-60594186 None:intergenic 25.0%
!! CAAAATAGTTTAGTTCAAGT+CGG - chr4_4:60594199-60594218 None:intergenic 25.0%
!!! TTTATGGACTGTTAGTTTTT+AGG + chr4_4:60594382-60594401 Msa0692240:intron 25.0%
!!! CTGCATATAATTTTAGTATG+AGG - chr4_4:60594591-60594610 None:intergenic 25.0%
! AGATTTCAATAACGAATTCT+CGG - chr4_4:60594958-60594977 None:intergenic 25.0%
!!! TTTCTTCAGAGTTTTTTCTT+CGG - chr4_4:60595015-60595034 None:intergenic 25.0%
! ACATTTCTTACAAAAATGAC+GGG - chr4_4:60595120-60595139 None:intergenic 25.0%
! GACATTTCTTACAAAAATGA+CGG - chr4_4:60595121-60595140 None:intergenic 25.0%
!! TAGATAAGTTTTTGTTCTTG+CGG - chr4_4:60595199-60595218 None:intergenic 25.0%
! TCAAATTCATCAGATAGAAA+AGG + chr4_4:60595467-60595486 Msa0692240:CDS 25.0%
! TTTCAATGCAATTCACAATT+AGG - chr4_4:60596086-60596105 None:intergenic 25.0%
!! CAGATTTGATAATATGTTGT+TGG + chr4_4:60596313-60596332 Msa0692240:three_prime_UTR 25.0%
!!! ACAATAATGTTAGTCTTCAT+TGG + chr4_4:60596402-60596421 Msa0692240:three_prime_UTR 25.0%
! AAAAAAGGTAACAAAACAAC+AGG - chr4_4:60596431-60596450 None:intergenic 25.0%
GGGGATATTATATAGTTTGA+TGG - chr4_4:60593386-60593405 None:intergenic 30.0%
TCAATCATATGAAACCTTCA+TGG - chr4_4:60593702-60593721 None:intergenic 30.0%
GAAAAAACCAAAGCAAAACA+AGG - chr4_4:60594049-60594068 None:intergenic 30.0%
!!! TTGCCTTGATTGAAGTTTTT+TGG + chr4_4:60594161-60594180 Msa0692240:intron 30.0%
! CGACTTGAACTAAACTATTT+TGG + chr4_4:60594197-60594216 Msa0692240:intron 30.0%
!!! TGTTATTTTGACACAGAACA+AGG - chr4_4:60594250-60594269 None:intergenic 30.0%
AATTATGTTGTGATGTCACA+AGG - chr4_4:60594297-60594316 None:intergenic 30.0%
ATTGTTCATGGACATATTAC+TGG + chr4_4:60594329-60594348 Msa0692240:intron 30.0%
CAGTCCATAAAACTAATCTA+TGG - chr4_4:60594373-60594392 None:intergenic 30.0%
! AATTTTAAGCGCAAAGTGAA+AGG - chr4_4:60594458-60594477 None:intergenic 30.0%
TCTATGAGAATCCATATATG+AGG + chr4_4:60594478-60594497 Msa0692240:intron 30.0%
GCATACGTGTATAAAAACAT+TGG - chr4_4:60594650-60594669 None:intergenic 30.0%
GCATACGTGTATAAAAACAT+TGG - chr4_4:60594650-60594669 None:intergenic 30.0%
!! TGTTTTTATACACGTATGCT+CGG + chr4_4:60594678-60594697 Msa0692240:intron 30.0%
AACTTACTGTGTACACAAAA+GGG - chr4_4:60594770-60594789 None:intergenic 30.0%
TAACTTACTGTGTACACAAA+AGG - chr4_4:60594771-60594790 None:intergenic 30.0%
! GTAATTAGTTCTTTCCTTGA+TGG - chr4_4:60594831-60594850 None:intergenic 30.0%
CATTTCTTACAAAAATGACG+GGG - chr4_4:60595119-60595138 None:intergenic 30.0%
GTAAGAAATGTCAAAGATAC+TGG + chr4_4:60595129-60595148 Msa0692240:CDS 30.0%
CAAACTATGTAATCCATTAG+GGG - chr4_4:60595270-60595289 None:intergenic 30.0%
CCAAACTATGTAATCCATTA+GGG - chr4_4:60595271-60595290 None:intergenic 30.0%
!! CCTAATGGATTACATAGTTT+GGG + chr4_4:60595269-60595288 Msa0692240:CDS 30.0%
ACTCAAAATTGTGTGTCAAA+TGG + chr4_4:60595374-60595393 Msa0692240:CDS 30.0%
! TAGAATGCTAATGGATAGTT+TGG - chr4_4:60595620-60595639 None:intergenic 30.0%
!! TCATTTTCAGGCTTTTCTTT+TGG - chr4_4:60595812-60595831 None:intergenic 30.0%
CATCAAATCTAAGTGTCTTT+GGG - chr4_4:60595865-60595884 None:intergenic 30.0%
TCATCAAATCTAAGTGTCTT+TGG - chr4_4:60595866-60595885 None:intergenic 30.0%
AGGAGAGAATCTTCAAAAAA+AGG - chr4_4:60596446-60596465 None:intergenic 30.0%
!!! TGTGTGTGACTCAGTTTTTT+AGG - chr4_4:60593516-60593535 None:intergenic 35.0%
! TTTTCCTACAGAAATGTCAG+AGG + chr4_4:60593538-60593557 Msa0692240:exon 35.0%
TTTACCTCTGACATTTCTGT+AGG - chr4_4:60593545-60593564 None:intergenic 35.0%
ACTGCTTAAGAAAAATGGGT+TGG - chr4_4:60593779-60593798 None:intergenic 35.0%
GGAATTGCTGAAATTCTCAA+TGG + chr4_4:60593851-60593870 Msa0692240:intron 35.0%
TGTGGCTCAAATTCATTATG+TGG + chr4_4:60593944-60593963 Msa0692240:intron 35.0%
TTCGATCCAATTTCACTGAT+GGG - chr4_4:60593972-60593991 None:intergenic 35.0%
ATTCGATCCAATTTCACTGA+TGG - chr4_4:60593973-60593992 None:intergenic 35.0%
!!! TGGTTTACCTTGTTTTGCTT+TGG + chr4_4:60594039-60594058 Msa0692240:intron 35.0%
ACAGAACAAGGACATGAATA+TGG - chr4_4:60594238-60594257 None:intergenic 35.0%
TATTGTAGGAGACAAGAGTA+AGG - chr4_4:60594408-60594427 None:intergenic 35.0%
!!! CATTGTTTTAGGAACCATCA+AGG + chr4_4:60594814-60594833 Msa0692240:intron 35.0%
ACAATGAGAAATGTTCCTGT+TGG + chr4_4:60595164-60595183 Msa0692240:CDS 35.0%
! TCGACATTTGATAATTCCAG+AGG + chr4_4:60595229-60595248 Msa0692240:CDS 35.0%
! CGACATTTGATAATTCCAGA+GGG + chr4_4:60595230-60595249 Msa0692240:CDS 35.0%
GCTAAACTTAATTCCCCTAA+TGG + chr4_4:60595254-60595273 Msa0692240:CDS 35.0%
!! CCCTAATGGATTACATAGTT+TGG + chr4_4:60595268-60595287 Msa0692240:CDS 35.0%
CCCAAACTATGTAATCCATT+AGG - chr4_4:60595272-60595291 None:intergenic 35.0%
GGATTACATAGTTTGGGAAA+TGG + chr4_4:60595275-60595294 Msa0692240:CDS 35.0%
ATCATGCAAGTTCGTATAGT+AGG + chr4_4:60595402-60595421 Msa0692240:CDS 35.0%
TCATGCAAGTTCGTATAGTA+GGG + chr4_4:60595403-60595422 Msa0692240:CDS 35.0%
AGGGAAAATGATCACTCAAT+TGG + chr4_4:60595422-60595441 Msa0692240:CDS 35.0%
AATGATCACTCAATTGGAGT+TGG + chr4_4:60595428-60595447 Msa0692240:CDS 35.0%
!! ACAAATGGGTTGGTAGATAA+AGG + chr4_4:60595500-60595519 Msa0692240:CDS 35.0%
TTGGTAGATAAAGGAGTTGA+AGG + chr4_4:60595509-60595528 Msa0692240:CDS 35.0%
TTCCATGGATAAGGCAAAAA+GGG - chr4_4:60595566-60595585 None:intergenic 35.0%
ATTCCATGGATAAGGCAAAA+AGG - chr4_4:60595567-60595586 None:intergenic 35.0%
ATTGCAGAATTCCATGGATA+AGG - chr4_4:60595575-60595594 None:intergenic 35.0%
! AATGCTAATGGATAGTTTGG+TGG - chr4_4:60595617-60595636 None:intergenic 35.0%
ACTGGAGTATAGAATGCTAA+TGG - chr4_4:60595629-60595648 None:intergenic 35.0%
! TTCTTTTGGTGAATTGACTG+AGG - chr4_4:60595798-60595817 None:intergenic 35.0%
!! GTGCTATTGTGTTCATTTTC+AGG - chr4_4:60595824-60595843 None:intergenic 35.0%
TTCACAATTAGGTTTCCTCA+TGG - chr4_4:60596075-60596094 None:intergenic 35.0%
AAGAACTTGTCAGCAGAATA+AGG - chr4_4:60596155-60596174 None:intergenic 35.0%
ATCAGAAAGAGAGAGAGAGA+AGG - chr4_4:60593363-60593382 None:intergenic 40.0%
! TTCCAAAGAGCTTTATCGCA+GGG - chr4_4:60593571-60593590 None:intergenic 40.0%
AATTCTGGTGGAGAAGAAGA+GGG - chr4_4:60593644-60593663 None:intergenic 40.0%
TGTATTGCAGAGGTGAATTC+TGG - chr4_4:60593659-60593678 None:intergenic 40.0%
AGTTTCATGCTGTATTGCAG+AGG - chr4_4:60593669-60593688 None:intergenic 40.0%
TGCAATACAGCATGAAACTG+AGG + chr4_4:60593670-60593689 Msa0692240:CDS 40.0%
TCCTACAATACTTATGCCTC+TGG + chr4_4:60594418-60594437 Msa0692240:intron 40.0%
! ACCAGAGGCATAAGTATTGT+AGG - chr4_4:60594422-60594441 None:intergenic 40.0%
TTAAGCGCAAAGTGAAAGGT+TGG - chr4_4:60594454-60594473 None:intergenic 40.0%
TGACTCTGACTCCTCATATA+TGG - chr4_4:60594492-60594511 None:intergenic 40.0%
CTAATTACAGCACAAGACGA+TGG + chr4_4:60594843-60594862 Msa0692240:CDS 40.0%
!! GGGCATGGAATTATTTTGTC+GGG - chr4_4:60595038-60595057 None:intergenic 40.0%
!! CGGGCATGGAATTATTTTGT+CGG - chr4_4:60595039-60595058 None:intergenic 40.0%
GAATTAAGTTTAGCACCCTC+TGG - chr4_4:60595248-60595267 None:intergenic 40.0%
GATGTTCAATACAGAAGCCA+TGG - chr4_4:60595345-60595364 None:intergenic 40.0%
GAATATGTTGCAACTGAGGA+GGG - chr4_4:60595538-60595557 None:intergenic 40.0%
CTTGGAATATGTTGCAACTG+AGG - chr4_4:60595542-60595561 None:intergenic 40.0%
! TAGTTTGGTGGACAAAAGGT+AGG - chr4_4:60595605-60595624 None:intergenic 40.0%
! TGGATAGTTTGGTGGACAAA+AGG - chr4_4:60595609-60595628 None:intergenic 40.0%
AGTAACTCCACCTGCATATT+GGG + chr4_4:60595646-60595665 Msa0692240:CDS 40.0%
ACACATGGTATATTCCATGG+AGG - chr4_4:60595683-60595702 None:intergenic 40.0%
GAGACACATGGTATATTCCA+TGG - chr4_4:60595686-60595705 None:intergenic 40.0%
AATATACCATGTGTCTCACC+AGG + chr4_4:60595689-60595708 Msa0692240:CDS 40.0%
!! TGATTAACAGAAGCACTTCC+TGG - chr4_4:60595710-60595729 None:intergenic 40.0%
AGTTCATTGTGGTCAAAGCT+TGG + chr4_4:60595905-60595924 Msa0692240:CDS 40.0%
GTTCATTGTGGTCAAAGCTT+GGG + chr4_4:60595906-60595925 Msa0692240:CDS 40.0%
GACAAAGCCAATTCTCTCAA+TGG + chr4_4:60595938-60595957 Msa0692240:CDS 40.0%
AAAGCCAATTCTCTCAATGG+AGG + chr4_4:60595941-60595960 Msa0692240:CDS 40.0%
! GTTCAATGGATTTCAGTCCA+AGG + chr4_4:60595970-60595989 Msa0692240:CDS 40.0%
TGGATTTCAGTCCAAGGTAA+AGG + chr4_4:60595976-60595995 Msa0692240:CDS 40.0%
GTGATTCATGTCCTTTACCT+TGG - chr4_4:60595990-60596009 None:intergenic 40.0%
GGTAAAGGACATGAATCACA+CGG + chr4_4:60595991-60596010 Msa0692240:CDS 40.0%
CAATTAGGTTTCCTCATGGA+AGG - chr4_4:60596071-60596090 None:intergenic 40.0%
AAGTACAACACTGTTGTCCT+AGG - chr4_4:60596231-60596250 None:intergenic 40.0%
GAAAGAGAGAGAGAGAAGGA+GGG - chr4_4:60593359-60593378 None:intergenic 45.0%
AGAAAGAGAGAGAGAGAAGG+AGG - chr4_4:60593360-60593379 None:intergenic 45.0%
! CTTCCAAAGAGCTTTATCGC+AGG - chr4_4:60593572-60593591 None:intergenic 45.0%
CTGCGATAAAGCTCTTTGGA+AGG + chr4_4:60593570-60593589 Msa0692240:CDS 45.0%
GAGATGAAGAGTCATTGGCA+GGG - chr4_4:60593622-60593641 None:intergenic 45.0%
AGAGGGAGATGAAGAGTCAT+TGG - chr4_4:60593627-60593646 None:intergenic 45.0%
GAATTCTGGTGGAGAAGAAG+AGG - chr4_4:60593645-60593664 None:intergenic 45.0%
ATTGCAGAGGTGAATTCTGG+TGG - chr4_4:60593656-60593675 None:intergenic 45.0%
GTGGTTCCCATCAGTGAAAT+TGG + chr4_4:60593963-60593982 Msa0692240:intron 45.0%
GAGAGCTCTTAAATCCTCAG+TGG - chr4_4:60594883-60594902 None:intergenic 45.0%
GTTTCAGCTGATGGAGTCTT+AGG - chr4_4:60594936-60594955 None:intergenic 45.0%
GAATTCTCGGTTTCAGCTGA+TGG - chr4_4:60594945-60594964 None:intergenic 45.0%
! TCTTACAAAAATGACGGGGC+TGG - chr4_4:60595115-60595134 None:intergenic 45.0%
TGTCAAAGATACTGGACTGC+AGG + chr4_4:60595137-60595156 Msa0692240:CDS 45.0%
AGAAATGTTCCTGTTGGAGC+TGG + chr4_4:60595170-60595189 Msa0692240:CDS 45.0%
!! GAAGCCATGGTGTTACAAAG+CGG - chr4_4:60595332-60595351 None:intergenic 45.0%
TCAGATAGAAAAGGCCACAC+CGG + chr4_4:60595476-60595495 Msa0692240:CDS 45.0%
ATCTACCAACCCATTTGTGC+CGG - chr4_4:60595498-60595517 None:intergenic 45.0%
GGAATATGTTGCAACTGAGG+AGG - chr4_4:60595539-60595558 None:intergenic 45.0%
GGATAAGGCAAAAAGGGACT+TGG - chr4_4:60595560-60595579 None:intergenic 45.0%
! GTCCCTTTTTGCCTTATCCA+TGG + chr4_4:60595561-60595580 Msa0692240:CDS 45.0%
! TTTGGTGGACAAAAGGTAGG+AGG - chr4_4:60595602-60595621 None:intergenic 45.0%
CAATATGCAGGTGGAGTTAC+TGG - chr4_4:60595647-60595666 None:intergenic 45.0%
CAGTAACTCCACCTGCATAT+TGG + chr4_4:60595645-60595664 Msa0692240:CDS 45.0%
GTAACTCCACCTGCATATTG+GGG + chr4_4:60595647-60595666 Msa0692240:CDS 45.0%
ATACAACCCCAATATGCAGG+TGG - chr4_4:60595656-60595675 None:intergenic 45.0%
CATGGTATATTCCATGGAGG+TGG - chr4_4:60595680-60595699 None:intergenic 45.0%
TTGAGTGTTTCCCCAAAGTC+GGG - chr4_4:60595757-60595776 None:intergenic 45.0%
CTTGAGTGTTTCCCCAAAGT+CGG - chr4_4:60595758-60595777 None:intergenic 45.0%
! GACTTTGGGGAAACACTCAA+GGG + chr4_4:60595757-60595776 Msa0692240:CDS 45.0%
AACTCCTTGCAGCTTCACTT+GGG - chr4_4:60595889-60595908 None:intergenic 45.0%
AAGCTGCAAGGAGTTCATTG+TGG + chr4_4:60595894-60595913 Msa0692240:CDS 45.0%
! AATGGAGGAGGCATGTTCAA+TGG + chr4_4:60595956-60595975 Msa0692240:CDS 45.0%
TAGGACTCTTGCATGGAGTT+TGG - chr4_4:60596212-60596231 None:intergenic 45.0%
AAACTCCATGCAAGAGTCCT+AGG + chr4_4:60596211-60596230 Msa0692240:three_prime_UTR 45.0%
AAACACCTGTTCAGTTAGGC+AGG - chr4_4:60596287-60596306 None:intergenic 45.0%
GCAGAAACACCTGTTCAGTT+AGG - chr4_4:60596291-60596310 None:intergenic 45.0%
!! ATTTGTATAAAAAAAAAAAA+GGG - chr4_4:60593406-60593425 None:intergenic 5.0%
!! AATTTGTATAAAAAAAAAAA+AGG - chr4_4:60593407-60593426 None:intergenic 5.0%
!! ATAATATTTAATATATTATG+TGG + chr4_4:60594019-60594038 Msa0692240:intron 5.0%
GACCCTGCGATAAAGCTCTT+TGG + chr4_4:60593566-60593585 Msa0692240:CDS 50.0%
GGGATGATCAGTGGAAGAAG+CGG - chr4_4:60593602-60593621 None:intergenic 50.0%
TCATTGGCAGGGATGATCAG+TGG - chr4_4:60593611-60593630 None:intergenic 50.0%
GGAGATGAAGAGTCATTGGC+AGG - chr4_4:60593623-60593642 None:intergenic 50.0%
AACTGAGGTACGTGCCATGA+AGG + chr4_4:60593685-60593704 Msa0692240:intron 50.0%
!! GGTTGGTGAATTCACACCAG+AGG - chr4_4:60594437-60594456 None:intergenic 50.0%
!! ATCCTCAGTGGTTTGTTGCG+AGG - chr4_4:60594871-60594890 None:intergenic 50.0%
TCAGCTGATGGAGTCTTAGG+AGG - chr4_4:60594933-60594952 None:intergenic 50.0%
TGTCCATGCTATTGCATCGC+GGG - chr4_4:60595058-60595077 None:intergenic 50.0%
GTGTCCATGCTATTGCATCG+CGG - chr4_4:60595059-60595078 None:intergenic 50.0%
CAAAGATACTGGACTGCAGG+AGG + chr4_4:60595140-60595159 Msa0692240:CDS 50.0%
TCCTCCGCTTTGTAACACCA+TGG + chr4_4:60595325-60595344 Msa0692240:CDS 50.0%
!! GGAGGCATTGCAGAATTCCA+TGG - chr4_4:60595581-60595600 None:intergenic 50.0%
GGCATACAACCCCAATATGC+AGG - chr4_4:60595659-60595678 None:intergenic 50.0%
TCTCAGTTCTGTCCCGACTT+TGG + chr4_4:60595742-60595761 Msa0692240:CDS 50.0%
CTCAGTTCTGTCCCGACTTT+GGG + chr4_4:60595743-60595762 Msa0692240:CDS 50.0%
TCAGTTCTGTCCCGACTTTG+GGG + chr4_4:60595744-60595763 Msa0692240:CDS 50.0%
! CGACTTTGGGGAAACACTCA+AGG + chr4_4:60595756-60595775 Msa0692240:CDS 50.0%
TTGGGGAAACACTCAAGGGA+TGG + chr4_4:60595761-60595780 Msa0692240:CDS 50.0%
ATGACCCAAGTGAAGCTGCA+AGG + chr4_4:60595882-60595901 Msa0692240:CDS 50.0%
GAACTCCTTGCAGCTTCACT+TGG - chr4_4:60595890-60595909 None:intergenic 50.0%
GCCAATTCTCTCAATGGAGG+AGG + chr4_4:60595944-60595963 Msa0692240:CDS 50.0%
GCCTCCTCCATTGAGAGAAT+TGG - chr4_4:60595948-60595967 None:intergenic 50.0%
GTTGTCCTAGGACTCTTGCA+TGG - chr4_4:60596219-60596238 None:intergenic 50.0%
GCTCAAGATAGCAGCTACTG+AGG - chr4_4:60596265-60596284 None:intergenic 50.0%
TTGAGCCTGCCTAACTGAAC+AGG + chr4_4:60596279-60596298 Msa0692240:three_prime_UTR 50.0%
AGCCTCGCAACAAACCACTG+AGG + chr4_4:60594866-60594885 Msa0692240:CDS 55.0%
ATGCTATTGCATCGCGGGCA+TGG - chr4_4:60595053-60595072 None:intergenic 55.0%
ATGCCCGCGATGCAATAGCA+TGG + chr4_4:60595052-60595071 Msa0692240:CDS 55.0%
!! GCCATGGTGTTACAAAGCGG+AGG - chr4_4:60595329-60595348 None:intergenic 55.0%
AAAGGCCACACCGGCACAAA+TGG + chr4_4:60595485-60595504 Msa0692240:CDS 55.0%
AAGGCCACACCGGCACAAAT+GGG + chr4_4:60595486-60595505 Msa0692240:CDS 55.0%
GGTGGACAAAAGGTAGGAGG+AGG - chr4_4:60595599-60595618 None:intergenic 55.0%
GCACTTCCTGGTGAGACACA+TGG - chr4_4:60595698-60595717 None:intergenic 55.0%
! GCAGGGTTGGCATACATCAG+CGG - chr4_4:60596028-60596047 None:intergenic 55.0%
GCTGATGTATGCCAACCCTG+CGG + chr4_4:60596027-60596046 Msa0692240:CDS 55.0%
! CCAACCCATTTGTGCCGGTG+TGG - chr4_4:60595493-60595512 None:intergenic 60.0%
CCACACCGGCACAAATGGGT+TGG + chr4_4:60595490-60595509 Msa0692240:CDS 60.0%
GGGGTTGTATGCCACCTCCA+TGG + chr4_4:60595666-60595685 Msa0692240:CDS 60.0%
! CCAACCCTGCGGCTTTATCG+CGG + chr4_4:60596038-60596057 Msa0692240:CDS 60.0%
GAGACCGCGATAAAGCCGCA+GGG - chr4_4:60596045-60596064 None:intergenic 60.0%
GCGGTCTCGTACCTTCCATG+AGG + chr4_4:60596057-60596076 Msa0692240:CDS 60.0%
TTGCGGCGACCAGCTCCAAC+AGG - chr4_4:60595182-60595201 None:intergenic 65.0%
CCGCGATAAAGCCGCAGGGT+TGG - chr4_4:60596041-60596060 None:intergenic 65.0%
CGAGACCGCGATAAAGCCGC+AGG - chr4_4:60596046-60596065 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 60593355 60596483 60593355 ID=Msa0692240;Name=Msa0692240
chr4_4 mRNA 60593355 60596483 60593355 ID=Msa0692240-mRNA-1;Parent=Msa0692240;Name=Msa0692240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=196|1|1|1|1|1|2|396|467
chr4_4 exon 60593355 60593691 60593355 ID=Msa0692240-mRNA-1:exon:16672;Parent=Msa0692240-mRNA-1
chr4_4 exon 60594825 60596483 60594825 ID=Msa0692240-mRNA-1:exon:16673;Parent=Msa0692240-mRNA-1
chr4_4 five_prime_UTR 60593355 60593550 60593355 ID=Msa0692240-mRNA-1:five_prime_utr;Parent=Msa0692240-mRNA-1
chr4_4 CDS 60593551 60593691 60593551 ID=Msa0692240-mRNA-1:cds;Parent=Msa0692240-mRNA-1
chr4_4 CDS 60594825 60596087 60594825 ID=Msa0692240-mRNA-1:cds;Parent=Msa0692240-mRNA-1
chr4_4 three_prime_UTR 60596088 60596483 60596088 ID=Msa0692240-mRNA-1:three_prime_utr;Parent=Msa0692240-mRNA-1
Gene Sequence

>Msa0692240

ATGTCAGAGGTAAAAGACCCTGCGATAAAGCTCTTTGGAAGGACAATTCCGCTTCTTCCACTGATCATCCCTGCCAATGACTCTTCATCTCCCTCTTCTTCTCCACCAGAATTCACCTCTGCAATACAGCATGAAACTGAGGAACCATCAAGGAAAGAACTAATTACAGCACAAGACGATGGAGCCTCGCAACAAACCACTGAGGATTTAAGAGCTCTCACAACATCTTCAGTTGTACTTGAGAATCCTCCTAAGACTCCATCAGCTGAAACCGAGAATTCGTTATTGAAATCTTCTACAAATGTAGAACAAAGCGAGACTAGTGTTTCCGAAGAAAAAACTCTGAAGAAACCCGACAAAATAATTCCATGCCCGCGATGCAATAGCATGGACACCAAATTTTGTTACTTCAACAATTACAATGTCAACCAGCCCCGTCATTTTTGTAAGAAATGTCAAAGATACTGGACTGCAGGAGGAACAATGAGAAATGTTCCTGTTGGAGCTGGTCGCCGCAAGAACAAAAACTTATCTAGCTCGCATTATCGACATTTGATAATTCCAGAGGGTGCTAAACTTAATTCCCCTAATGGATTACATAGTTTGGGAAATGGAGCAGCTGTTTTGACGTTTGATTCAAATCCTCCGCTTTGTAACACCATGGCTTCTGTATTGAACATCGCTGAAAGAACTCAAAATTGTGTGTCAAATGGTTTTCATCATGCAAGTTCGTATAGTAGGGAAAATGATCACTCAATTGGAGTTGGAGTATCAGTTACAACATCAAATTCATCAGATAGAAAAGGCCACACCGGCACAAATGGGTTGGTAGATAAAGGAGTTGAAGGTTTCCCTCCTCAGTTGCAACATATTCCAAGTCCCTTTTTGCCTTATCCATGGAATTCTGCAATGCCTCCTCCTACCTTTTGTCCACCAAACTATCCATTAGCATTCTATACTCCAGTAACTCCACCTGCATATTGGGGTTGTATGCCACCTCCATGGAATATACCATGTGTCTCACCAGGAAGTGCTTCTGTTAATCAAAGTGACTCTGCTCTCAGTTCTGTCCCGACTTTGGGGAAACACTCAAGGGATGGAAACATCATTACCTCAGTCAATTCACCAAAAGAAAAGCCTGAAAATGAACACAATAGCACTGAAAGCAGCGTTTTGATCCCAAAGACACTTAGATTTGATGACCCAAGTGAAGCTGCAAGGAGTTCATTGTGGTCAAAGCTTGGGATCAATAATGACAAAGCCAATTCTCTCAATGGAGGAGGCATGTTCAATGGATTTCAGTCCAAGGTAAAGGACATGAATCACACGGTTGAAACGTCACCGCTGATGTATGCCAACCCTGCGGCTTTATCGCGGTCTCGTACCTTCCATGAGGAAACCTAA
Protein sequence

>Msa0692240

MSEVKDPAIKLFGRTIPLLPLIIPANDSSSPSSSPPEFTSAIQHETEEPSRKELITAQDDGASQQTTEDLRALTTSSVVLENPPKTPSAETENSLLKSSTNVEQSETSVSEEKTLKKPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSSSHYRHLIIPEGAKLNSPNGLHSLGNGAAVLTFDSNPPLCNTMASVLNIAERTQNCVSNGFHHASSYSRENDHSIGVGVSVTTSNSSDRKGHTGTNGLVDKGVEGFPPQLQHIPSPFLPYPWNSAMPPPTFCPPNYPLAFYTPVTPPAYWGCMPPPWNIPCVSPGSASVNQSDSALSSVPTLGKHSRDGNIITSVNSPKEKPENEHNSTESSVLIPKTLRFDDPSEAARSSLWSKLGINNDKANSLNGGGMFNGFQSKVKDMNHTVETSPLMYANPAALSRSRTFHEET*