AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0749330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0749330 MtrunA17_Chr5g0412271 92.647 68 3 1 1 66 161 228 3.47e-39 128
Msa0749330 MtrunA17_Chr5g0412461 80.597 67 12 1 1 66 161 227 2.05e-32 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0749330 AT2G22540.3 56.716 67 25 2 2 66 176 240 6.24e-15 66.2
Msa0749330 AT2G22540.1 56.716 67 25 2 2 66 176 240 6.24e-15 66.2
Msa0749330 AT2G22540.2 56.716 67 25 2 2 66 171 235 6.95e-15 66.2

Find 57 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTATTGTTCCTCAAAA+AGG 0.189187 5_2:-2824393 Msa0749330:five_prime_UTR
TACCTTAATTTATCTTCTTT+TGG 0.203792 5_2:+2823942 None:intergenic
GATGTGTAGTTAACTATTTA+TGG 0.226009 5_2:+2824125 None:intergenic
ATCCAAAAGAAGATAAATTA+AGG 0.249601 5_2:-2823944 Msa0749330:five_prime_UTR
ACATTCCTTCAGCCGGCATA+TGG 0.334671 5_2:+2821983 None:intergenic
AAGAAGAGGTTTAATCAAAA+AGG 0.335755 5_2:-2823840 Msa0749330:five_prime_UTR
TTTGTGTGACTGGGTGTGTT+TGG 0.352333 5_2:-2821961 Msa0749330:three_prime_UTR
TATCTGAACTCTCATAATCT+TGG 0.352501 5_2:+2822190 None:intergenic
ACTGGGTGTGTTTGGATTGA+GGG 0.357395 5_2:-2821953 Msa0749330:three_prime_UTR
CACCAGTTTCTTCTCTATAG+AGG 0.366305 5_2:-2824276 Msa0749330:five_prime_UTR
ATCTGAACTCTCATAATCTT+GGG 0.383551 5_2:+2822191 None:intergenic
AGAAGAAACTGGTGAACAAA+TGG 0.387332 5_2:+2824285 None:intergenic
GACTGGGTGTGTTTGGATTG+AGG 0.397168 5_2:-2821954 Msa0749330:three_prime_UTR
TGAAGGAATGTTTGTGTGAC+TGG 0.398747 5_2:-2821971 Msa0749330:three_prime_UTR
TCTTTGAATACTCCAACTTA+AGG 0.399297 5_2:-2823751 Msa0749330:intron
TGTGTTTGGATTGAGGGTTT+AGG 0.420522 5_2:-2821947 Msa0749330:three_prime_UTR
GACAAAAGAAAGAGAAGTGA+AGG 0.420606 5_2:+2824099 None:intergenic
TCAGATACATCGCTCAAGTT+GGG 0.436087 5_2:-2822174 Msa0749330:CDS
ATGATGGATCATAAGGTTGC+GGG 0.443250 5_2:-2822318 Msa0749330:intron
AAATTAAGGTAAAGAAGAAA+TGG 0.447909 5_2:-2823930 Msa0749330:five_prime_UTR
GATGCAGTCATGCAGGCATT+TGG 0.450177 5_2:+2824179 None:intergenic
GTCTCTGAAAGATAATGAAA+TGG 0.452122 5_2:+2824230 None:intergenic
GAGAAAGAAAGACCTTAAGT+TGG 0.470112 5_2:+2823739 None:intergenic
TTCAGATACATCGCTCAAGT+TGG 0.479254 5_2:-2822175 Msa0749330:CDS
CATTCCTTCAGCCGGCATAT+GGG 0.480333 5_2:+2821984 None:intergenic
ATCCTCTATAGAGAAGAAAC+TGG 0.502434 5_2:+2824274 None:intergenic
CTCTATAGAGGATCTAAAAG+AGG 0.520099 5_2:-2824264 Msa0749330:five_prime_UTR
TGGATGAATTATGGGTTAGG+AGG 0.527557 5_2:+2824328 None:intergenic
ATCATACATGTTGCTTTAGT+CGG 0.530014 5_2:+2822505 None:intergenic
ATAATCTTGGGGAGGACCAA+TGG 0.530085 5_2:+2822203 None:intergenic
GAAGAAACTGGTGAACAAAT+GGG 0.545104 5_2:+2824286 None:intergenic
CACACAAACATTCCTTCAGC+CGG 0.560898 5_2:+2821976 None:intergenic
TATGAGAATGTGGTTAATGA+AGG 0.563013 5_2:-2822261 Msa0749330:CDS
ATGAAATGATGCAGTCATGC+AGG 0.563073 5_2:+2824172 None:intergenic
TTTGGATTGAGGGTTTAGGA+AGG 0.563543 5_2:-2821943 Msa0749330:three_prime_UTR
ATTTGCAGGCTCCCATATGC+CGG 0.566203 5_2:-2821995 Msa0749330:intron
GGCTCCCATATGCCGGCTGA+AGG 0.566587 5_2:-2821988 Msa0749330:exon
TTGGATTGAGGGTTTAGGAA+GGG 0.570252 5_2:-2821942 Msa0749330:three_prime_UTR
GATTGAGGGTTTAGGAAGGG+AGG 0.571429 5_2:-2821939 Msa0749330:three_prime_UTR
ATGATTAACGACAGAATGGT+TGG 0.571480 5_2:-2822294 Msa0749330:CDS
GTAGTGTGAAATGTACTTTG+TGG 0.574489 5_2:+2824360 None:intergenic
ACCAACGTTTACAACTCCAT+TGG 0.576740 5_2:-2822219 Msa0749330:CDS
TCTGCAGGGAAGGCAACTGA+TGG 0.577814 5_2:-2822538 Msa0749330:intron
GAAGGAATGTTTGTGTGACT+GGG 0.578364 5_2:-2821970 Msa0749330:three_prime_UTR
GGGCATGATTAACGACAGAA+TGG 0.581587 5_2:-2822298 Msa0749330:CDS
ATAGAGGATCTAAAAGAGGA+AGG 0.586408 5_2:-2824260 Msa0749330:five_prime_UTR
TTGAGGAACAATAATGAACA+TGG 0.587700 5_2:+2824398 None:intergenic
AACGTTGGTGACAGATTCTG+AGG 0.592708 5_2:+2822233 None:intergenic
CAGATACATCGCTCAAGTTG+GGG 0.603531 5_2:-2822173 Msa0749330:intron
TCTGAACTCTCATAATCTTG+GGG 0.621502 5_2:+2822192 None:intergenic
ATTAACGACAGAATGGTTGG+AGG 0.640229 5_2:-2822291 Msa0749330:CDS
ACCAATGGAGTTGTAAACGT+TGG 0.652128 5_2:+2822218 None:intergenic
AGGTGATGAATATGAGAATG+TGG 0.655081 5_2:-2822271 Msa0749330:CDS
GAACTCTCATAATCTTGGGG+AGG 0.658116 5_2:+2822195 None:intergenic
AGATTGAAAACGCAACGGCG+AGG 0.667280 5_2:-2823883 Msa0749330:five_prime_UTR
AAAGAAGATTGAAAACGCAA+CGG 0.680027 5_2:-2823888 Msa0749330:five_prime_UTR
GAAACTGGTGAACAAATGGG+TGG 0.701064 5_2:+2824289 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTGGATGAATTAT+GGG + chr5_2:2821892-2821911 None:intergenic 15.0%
!!! ATTTATTTTTGGATGAATTA+TGG + chr5_2:2821893-2821912 None:intergenic 15.0%
!! ATATATGTAGCAAAAAATAA+AGG - chr5_2:2822210-2822229 Msa0749330:CDS 15.0%
!! AAAAATATCATGCAAATATT+GGG + chr5_2:2823824-2823843 None:intergenic 15.0%
!! TAAAAATATCATGCAAATAT+TGG + chr5_2:2823825-2823844 None:intergenic 15.0%
!! AAAAAATTACTTGTATATGA+TGG - chr5_2:2823875-2823894 Msa0749330:five_prime_UTR 15.0%
!!! GTGGTTTCTATATTTATTTT+TGG + chr5_2:2821904-2821923 None:intergenic 20.0%
!! ATCCAAAAGAAGATAAATTA+AGG - chr5_2:2822265-2822284 Msa0749330:CDS 20.0%
!!! TACCTTAATTTATCTTCTTT+TGG + chr5_2:2822270-2822289 None:intergenic 20.0%
!! AAATTAAGGTAAAGAAGAAA+TGG - chr5_2:2822279-2822298 Msa0749330:CDS 20.0%
!! ACTCTAATGAATTAAAACAA+TGG - chr5_2:2822518-2822537 Msa0749330:CDS 20.0%
!!! GTAGATCTTTTTTCAAAAAA+TGG - chr5_2:2822610-2822629 Msa0749330:intron 20.0%
!! TTTATATAGCTAATGTTACA+CGG - chr5_2:2823200-2823219 Msa0749330:intron 20.0%
!!! TTTAACCATTGTTTTTGAAA+CGG + chr5_2:2823237-2823256 None:intergenic 20.0%
!!! AATTATGCTTAGTTTTGTAT+TGG - chr5_2:2823523-2823542 Msa0749330:intron 20.0%
!!! AGTAAAAATTGGTTGTTTTA+GGG + chr5_2:2823648-2823667 None:intergenic 20.0%
!! TAAGTGAACTAATAATAATG+TGG + chr5_2:2824079-2824098 None:intergenic 20.0%
!!! AATGTAGAATTTCTTTTTGA+AGG - chr5_2:2824116-2824135 Msa0749330:five_prime_UTR 20.0%
!!! GATTTTTGGTGATGTTTATT+TGG + chr5_2:2821792-2821811 None:intergenic 25.0%
!! CAATAATGAACATGGATTTT+TGG + chr5_2:2821806-2821825 None:intergenic 25.0%
! TTCATTATTGTTCCTCAAAA+AGG - chr5_2:2821816-2821835 Msa0749330:three_prime_UTR 25.0%
! GATGTGTAGTTAACTATTTA+TGG + chr5_2:2822087-2822106 None:intergenic 25.0%
!! TCTTTTGTCTCTTCTTTTTT+AGG - chr5_2:2822124-2822143 Msa0749330:intron 25.0%
! AAGAAGAGGTTTAATCAAAA+AGG - chr5_2:2822369-2822388 Msa0749330:intron 25.0%
! AAGTGAAAACAAATTAACAC+AGG - chr5_2:2822674-2822693 Msa0749330:intron 25.0%
! TATTTCAGCCAACATTAATT+AGG - chr5_2:2822803-2822822 Msa0749330:intron 25.0%
! CCAATTATCCTAATTAATGT+TGG + chr5_2:2822814-2822833 None:intergenic 25.0%
! CCAACATTAATTAGGATAAT+TGG - chr5_2:2822811-2822830 Msa0749330:intron 25.0%
! TTTATCCTAACAAGTGAAAT+CGG - chr5_2:2822917-2822936 Msa0749330:intron 25.0%
! TTACGAGTTAGATCAAAAAA+TGG + chr5_2:2822986-2823005 None:intergenic 25.0%
!!! AGATTTGTGAACAACTTTTT+TGG + chr5_2:2823305-2823324 None:intergenic 25.0%
!! GACGTCAATATAAACAATTT+TGG + chr5_2:2823345-2823364 None:intergenic 25.0%
!!! GTGTTATTTTAGAAGATAGA+TGG + chr5_2:2823435-2823454 None:intergenic 25.0%
! GAAGCTAATTTAGATATATG+TGG + chr5_2:2823602-2823621 None:intergenic 25.0%
!!! CAGTAAAAATTGGTTGTTTT+AGG + chr5_2:2823649-2823668 None:intergenic 25.0%
TTGAGGAACAATAATGAACA+TGG + chr5_2:2821814-2821833 None:intergenic 30.0%
! GGATTTTACTTTCCTTTTTG+AGG + chr5_2:2821831-2821850 None:intergenic 30.0%
! TTTTGGATGAATTATGGGTT+AGG + chr5_2:2821887-2821906 None:intergenic 30.0%
! GTCTCTGAAAGATAATGAAA+TGG + chr5_2:2821982-2822001 None:intergenic 30.0%
AAAGAAGATTGAAAACGCAA+CGG - chr5_2:2822321-2822340 Msa0749330:intron 30.0%
!!! ACTTTTTCAAAGAGAAGAAG+AGG - chr5_2:2822355-2822374 Msa0749330:intron 30.0%
! TCATCATTTTCTCTTCTACT+GGG - chr5_2:2822431-2822450 Msa0749330:intron 30.0%
TCTTTGAATACTCCAACTTA+AGG - chr5_2:2822458-2822477 Msa0749330:intron 30.0%
TTCTCTCATGAATGAAAACA+CGG - chr5_2:2822488-2822507 Msa0749330:intron 30.0%
TCTAAACAAATGCACAACAT+AGG + chr5_2:2822760-2822779 None:intergenic 30.0%
! TCACTTGTTAGGATAAAGTT+TGG + chr5_2:2822914-2822933 None:intergenic 30.0%
! TTCACACAAAACACATTTTG+AGG + chr5_2:2823032-2823051 None:intergenic 30.0%
ACATATAAACCTAAACCACT+TGG - chr5_2:2823136-2823155 Msa0749330:intron 30.0%
!!! TTTGTGAACAACTTTTTTGG+TGG + chr5_2:2823302-2823321 None:intergenic 30.0%
!!! TGTTTTAGGGATGAAAGTAA+GGG + chr5_2:2823635-2823654 None:intergenic 30.0%
!!! TTGTTTTAGGGATGAAAGTA+AGG + chr5_2:2823636-2823655 None:intergenic 30.0%
! CAATTTTTACTGAATCTGCA+GGG - chr5_2:2823657-2823676 Msa0749330:intron 30.0%
!! ATCATACATGTTGCTTTAGT+CGG + chr5_2:2823707-2823726 None:intergenic 30.0%
!! CTTGTATATGATGGATCATA+AGG - chr5_2:2823884-2823903 Msa0749330:five_prime_UTR 30.0%
TATGAGAATGTGGTTAATGA+AGG - chr5_2:2823948-2823967 Msa0749330:five_prime_UTR 30.0%
ATCTGAACTCTCATAATCTT+GGG + chr5_2:2824021-2824040 None:intergenic 30.0%
TATCTGAACTCTCATAATCT+TGG + chr5_2:2824022-2824041 None:intergenic 30.0%
GTAGTGTGAAATGTACTTTG+TGG + chr5_2:2821852-2821871 None:intergenic 35.0%
GAAGAAACTGGTGAACAAAT+GGG + chr5_2:2821926-2821945 None:intergenic 35.0%
AGAAGAAACTGGTGAACAAA+TGG + chr5_2:2821927-2821946 None:intergenic 35.0%
ATCCTCTATAGAGAAGAAAC+TGG + chr5_2:2821938-2821957 None:intergenic 35.0%
CTCTATAGAGGATCTAAAAG+AGG - chr5_2:2821945-2821964 Msa0749330:three_prime_UTR 35.0%
ATAGAGGATCTAAAAGAGGA+AGG - chr5_2:2821949-2821968 Msa0749330:three_prime_UTR 35.0%
GACAAAAGAAAGAGAAGTGA+AGG + chr5_2:2822113-2822132 None:intergenic 35.0%
TCTCTCTTTCAATTATACGC+TGG - chr5_2:2822158-2822177 Msa0749330:intron 35.0%
! CTCATCATTTTCTCTTCTAC+TGG - chr5_2:2822430-2822449 Msa0749330:intron 35.0%
GAGAAAGAAAGACCTTAAGT+TGG + chr5_2:2822473-2822492 None:intergenic 35.0%
CTAAATCACTGATCAGAGTT+GGG + chr5_2:2822839-2822858 None:intergenic 35.0%
ACTAAATCACTGATCAGAGT+TGG + chr5_2:2822840-2822859 None:intergenic 35.0%
! CAATTGCACTGAAGAGTTTT+AGG + chr5_2:2822872-2822891 None:intergenic 35.0%
! TGTAACCGATTTCACTTGTT+AGG + chr5_2:2822925-2822944 None:intergenic 35.0%
!! CACAAAACACATTTTGAGGA+GGG + chr5_2:2823028-2823047 None:intergenic 35.0%
!! ACACAAAACACATTTTGAGG+AGG + chr5_2:2823029-2823048 None:intergenic 35.0%
!!! ACCATTGTTTTTGAAACGGA+GGG + chr5_2:2823233-2823252 None:intergenic 35.0%
!!! AACCATTGTTTTTGAAACGG+AGG + chr5_2:2823234-2823253 None:intergenic 35.0%
!! GTGTGTTTGAGTTTTCTAGT+CGG - chr5_2:2823258-2823277 Msa0749330:intron 35.0%
AAAATTCACACACACAAGTG+GGG + chr5_2:2823394-2823413 None:intergenic 35.0%
GAAAATTCACACACACAAGT+GGG + chr5_2:2823395-2823414 None:intergenic 35.0%
TGAAAATTCACACACACAAG+TGG + chr5_2:2823396-2823415 None:intergenic 35.0%
CCTGCAGATTCAGTAAAAAT+TGG + chr5_2:2823659-2823678 None:intergenic 35.0%
! CCAATTTTTACTGAATCTGC+AGG - chr5_2:2823656-2823675 Msa0749330:intron 35.0%
!! TATGATGGATCATAAGGTTG+CGG - chr5_2:2823890-2823909 Msa0749330:five_prime_UTR 35.0%
ATGATTAACGACAGAATGGT+TGG - chr5_2:2823915-2823934 Msa0749330:five_prime_UTR 35.0%
AGGTGATGAATATGAGAATG+TGG - chr5_2:2823938-2823957 Msa0749330:five_prime_UTR 35.0%
TCTGAACTCTCATAATCTTG+GGG + chr5_2:2824020-2824039 None:intergenic 35.0%
!! TGGATGAATTATGGGTTAGG+AGG + chr5_2:2821884-2821903 None:intergenic 40.0%
CACCAGTTTCTTCTCTATAG+AGG - chr5_2:2821933-2821952 Msa0749330:three_prime_UTR 40.0%
ATGAAATGATGCAGTCATGC+AGG + chr5_2:2822040-2822059 None:intergenic 40.0%
!! AAACACATTTTGAGGAGGGA+CGG + chr5_2:2823024-2823043 None:intergenic 40.0%
AGAGTGGTTGAATTGGACAA+GGG + chr5_2:2823098-2823117 None:intergenic 40.0%
TCCAATTCAACCACTCTCAT+AGG - chr5_2:2823101-2823120 Msa0749330:intron 40.0%
TCCTATGAGAGTGGTTGAAT+TGG + chr5_2:2823105-2823124 None:intergenic 40.0%
TCTGTACTATCCTATGAGAG+TGG + chr5_2:2823114-2823133 None:intergenic 40.0%
TTATGTGCACCAAGTGGTTT+AGG + chr5_2:2823148-2823167 None:intergenic 40.0%
GCATTATTATGTGCACCAAG+TGG + chr5_2:2823154-2823173 None:intergenic 40.0%
ATCCATGTGAACATTGCACA+GGG + chr5_2:2823176-2823195 None:intergenic 40.0%
TATCCATGTGAACATTGCAC+AGG + chr5_2:2823177-2823196 None:intergenic 40.0%
TCCCTCCGTTTCAAAAACAA+TGG - chr5_2:2823229-2823248 Msa0749330:intron 40.0%
! TTTTACTGAATCTGCAGGGA+AGG - chr5_2:2823661-2823680 Msa0749330:intron 40.0%
!! ATGATGGATCATAAGGTTGC+GGG - chr5_2:2823891-2823910 Msa0749330:five_prime_UTR 40.0%
ATTAACGACAGAATGGTTGG+AGG - chr5_2:2823918-2823937 Msa0749330:five_prime_UTR 40.0%
ACCAACGTTTACAACTCCAT+TGG - chr5_2:2823990-2824009 Msa0749330:intron 40.0%
ACCAATGGAGTTGTAAACGT+TGG + chr5_2:2823994-2824013 None:intergenic 40.0%
TTCAGATACATCGCTCAAGT+TGG - chr5_2:2824034-2824053 Msa0749330:intron 40.0%
TCAGATACATCGCTCAAGTT+GGG - chr5_2:2824035-2824054 Msa0749330:intron 40.0%
CGCTTTCATGTACTATTTGC+AGG - chr5_2:2824200-2824219 Msa0749330:five_prime_UTR 40.0%
TGAAGGAATGTTTGTGTGAC+TGG - chr5_2:2824238-2824257 Msa0749330:five_prime_UTR 40.0%
GAAGGAATGTTTGTGTGACT+GGG - chr5_2:2824239-2824258 Msa0749330:five_prime_UTR 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr5_2:2824262-2824281 Msa0749330:five_prime_UTR 40.0%
TTTGGATTGAGGGTTTAGGA+AGG - chr5_2:2824266-2824285 Msa0749330:five_prime_UTR 40.0%
TTGGATTGAGGGTTTAGGAA+GGG - chr5_2:2824267-2824286 Msa0749330:five_prime_UTR 40.0%
GAAACTGGTGAACAAATGGG+TGG + chr5_2:2821923-2821942 None:intergenic 45.0%
!!! GCACTGAAGAGTTTTAGGTG+TGG + chr5_2:2822867-2822886 None:intergenic 45.0%
GAGAGTGGTTGAATTGGACA+AGG + chr5_2:2823099-2823118 None:intergenic 45.0%
GGGATGAAAGTAAGGGTTGT+AGG + chr5_2:2823628-2823647 None:intergenic 45.0%
GGGCATGATTAACGACAGAA+TGG - chr5_2:2823911-2823930 Msa0749330:five_prime_UTR 45.0%
!! AACGTTGGTGACAGATTCTG+AGG + chr5_2:2823979-2823998 None:intergenic 45.0%
ATAATCTTGGGGAGGACCAA+TGG + chr5_2:2824009-2824028 None:intergenic 45.0%
GAACTCTCATAATCTTGGGG+AGG + chr5_2:2824017-2824036 None:intergenic 45.0%
! CAGATACATCGCTCAAGTTG+GGG - chr5_2:2824036-2824055 Msa0749330:intron 45.0%
CACACAAACATTCCTTCAGC+CGG + chr5_2:2824236-2824255 None:intergenic 45.0%
TTTGTGTGACTGGGTGTGTT+TGG - chr5_2:2824248-2824267 Msa0749330:five_prime_UTR 45.0%
ACTGGGTGTGTTTGGATTGA+GGG - chr5_2:2824256-2824275 Msa0749330:five_prime_UTR 45.0%
!!! ATTTTTTAAATTTCTAAAAA+TGG - chr5_2:2822588-2822607 Msa0749330:intron 5.0%
GATGCAGTCATGCAGGCATT+TGG + chr5_2:2822033-2822052 None:intergenic 50.0%
AGATTGAAAACGCAACGGCG+AGG - chr5_2:2822326-2822345 Msa0749330:intron 50.0%
!! TTTTGAGGAGGGACGGACAT+AGG + chr5_2:2823017-2823036 None:intergenic 50.0%
TGCCCTGTGCAATGTTCACA+TGG - chr5_2:2823171-2823190 Msa0749330:intron 50.0%
ACACACAAGTGGGGAATCTC+TGG + chr5_2:2823385-2823404 None:intergenic 50.0%
ATTTGCAGGCTCCCATATGC+CGG - chr5_2:2824214-2824233 Msa0749330:five_prime_UTR 50.0%
CATTCCTTCAGCCGGCATAT+GGG + chr5_2:2824228-2824247 None:intergenic 50.0%
ACATTCCTTCAGCCGGCATA+TGG + chr5_2:2824229-2824248 None:intergenic 50.0%
GACTGGGTGTGTTTGGATTG+AGG - chr5_2:2824255-2824274 Msa0749330:five_prime_UTR 50.0%
GATTGAGGGTTTAGGAAGGG+AGG - chr5_2:2824270-2824289 Msa0749330:five_prime_UTR 50.0%
GACGCGATGAGCTTTACGAG+TGG + chr5_2:2823076-2823095 None:intergenic 55.0%
TCTGCAGGGAAGGCAACTGA+TGG - chr5_2:2823671-2823690 Msa0749330:intron 55.0%
! GGCTCCCATATGCCGGCTGA+AGG - chr5_2:2824221-2824240 Msa0749330:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 2821786 2824445 2821786 ID=Msa0749330;Name=Msa0749330
chr5_2 mRNA 2821786 2824445 2821786 ID=Msa0749330-mRNA-1;Parent=Msa0749330;Name=Msa0749330-mRNA-1;_AED=0.08;_eAED=0.08;_QI=596|1|1|1|0.25|0.2|5|205|66
chr5_2 exon 2821786 2822009 2821786 ID=Msa0749330-mRNA-1:exon:926;Parent=Msa0749330-mRNA-1
chr5_2 exon 2822174 2822325 2822174 ID=Msa0749330-mRNA-1:exon:925;Parent=Msa0749330-mRNA-1
chr5_2 exon 2822512 2822553 2822512 ID=Msa0749330-mRNA-1:exon:924;Parent=Msa0749330-mRNA-1
chr5_2 exon 2823752 2823975 2823752 ID=Msa0749330-mRNA-1:exon:923;Parent=Msa0749330-mRNA-1
chr5_2 exon 2824086 2824445 2824086 ID=Msa0749330-mRNA-1:exon:922;Parent=Msa0749330-mRNA-1
chr5_2 five_prime_UTR 2824086 2824445 2824086 ID=Msa0749330-mRNA-1:five_prime_utr;Parent=Msa0749330-mRNA-1
chr5_2 five_prime_UTR 2823752 2823975 2823752 ID=Msa0749330-mRNA-1:five_prime_utr;Parent=Msa0749330-mRNA-1
chr5_2 five_prime_UTR 2822542 2822553 2822542 ID=Msa0749330-mRNA-1:five_prime_utr;Parent=Msa0749330-mRNA-1
chr5_2 CDS 2822512 2822541 2822512 ID=Msa0749330-mRNA-1:cds;Parent=Msa0749330-mRNA-1
chr5_2 CDS 2822174 2822325 2822174 ID=Msa0749330-mRNA-1:cds;Parent=Msa0749330-mRNA-1
chr5_2 CDS 2821991 2822009 2821991 ID=Msa0749330-mRNA-1:cds;Parent=Msa0749330-mRNA-1
chr5_2 three_prime_UTR 2821786 2821990 2821786 ID=Msa0749330-mRNA-1:three_prime_utr;Parent=Msa0749330-mRNA-1
Gene Sequence

>Msa0749330

ATGGAAGAGAACGACCGACTAAAGCAACATGTTGCGGGCATGATTAACGACAGAATGGTTGGAGGTGATGAATATGAGAATGTGGTTAATGAAGGTCAATCCTCAGAATCTGTCACCAACGTTTACAACTCCATTGGTCCTCCCCAAGATTATGAGAGTTCAGATACATCGCTCAAGTTGGGGCTCCCATATGCCGGCTGA
Protein sequence

>Msa0749330

MEENDRLKQHVAGMINDRMVGGDEYENVVNEGQSSESVTNVYNSIGPPQDYESSDTSLKLGLPYAG*