AlfalfaGEDB | Msa0664760

M. sativa cultivar zhongmu-4 / Msa0664760

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664760	XP_003604300.2	68.580	331	39	4	1	268	1	329	1.70e-134	394

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664760	sp\|Q9T072\|BH025_ARATH	38.926	149	88	3	120	267	158	304	1.27e-20	92.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664760	G7JFN8	68.580	331	39	4	1	268	1	329	8.10e-135	394

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0664760	-0.821583	3.738555e-53	-8.615850e-47
Msa0000940	Msa0664760	0.802901	4.502148e-49	-8.615850e-47
Msa0004060	Msa0664760	0.840451	8.627466e-58	-8.615850e-47
Msa0004540	Msa0664760	0.826386	2.790684e-54	-8.615850e-47
Msa0005000	Msa0664760	-0.825482	4.575743e-54	-8.615850e-47
Msa0006880	Msa0664760	0.835160	1.972230e-56	-8.615850e-47
Msa0010020	Msa0664760	0.809406	1.922695e-50	-8.615850e-47
Msa0026660	Msa0664760	0.808900	2.467773e-50	-8.615850e-47
Msa0027390	Msa0664760	0.803285	3.750196e-49	-8.615850e-47
Msa0027580	Msa0664760	0.836806	7.538514e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664760	MtrunA17_Chr4g0002781	68.580	331	39	4	1	268	1	329	1.56e-138	394
Msa0664760	MtrunA17_Chr4g0002801	59.756	328	54	7	1	268	1	310	5.73e-110	321
Msa0664760	MtrunA17_Chr2g0333621	36.688	308	138	7	1	268	1	291	4.10e-45	154
Msa0664760	MtrunA17_Chr2g0333641	36.893	309	132	10	1	268	1	287	6.41e-42	146
Msa0664760	MtrunA17_Chr8g0336681	37.273	220	95	7	91	268	97	315	1.63e-28	111
Msa0664760	MtrunA17_Chr7g0225901	39.634	164	90	5	114	274	89	246	8.85e-27	105
Msa0664760	MtrunA17_Chr5g0400621	41.447	152	85	2	120	270	163	311	6.03e-26	104
Msa0664760	MtrunA17_Chr2g0333611	40.373	161	79	6	114	268	46	195	1.12e-24	98.6
Msa0664760	MtrunA17_Chr7g0233441	39.333	150	73	4	122	268	42	176	1.74e-24	97.4
Msa0664760	MtrunA17_Chr4g0054581	45.185	135	67	3	138	268	223	354	5.31e-24	99.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664760	AT4G37850.2	38.926	149	88	3	120	267	158	304	1.29e-21	92.8
Msa0664760	AT4G37850.1	38.926	149	88	3	120	267	158	304	1.29e-21	92.8
Msa0664760	AT2G22760.2	35.542	166	90	5	120	276	125	282	7.52e-19	84.7
Msa0664760	AT2G22760.1	35.443	158	85	5	120	268	125	274	7.07e-18	82.0
Msa0664760	AT2G22750.4	40.132	152	85	4	120	267	160	309	8.75e-16	76.6
Msa0664760	AT2G22750.1	40.132	152	85	4	120	267	132	281	8.94e-16	76.3
Msa0664760	AT2G22750.3	40.132	152	85	4	120	267	160	309	8.99e-16	76.6
Msa0664760	AT2G22750.5	40.132	152	85	4	120	267	156	305	9.05e-16	76.6
Msa0664760	AT2G22750.2	40.132	152	85	4	120	267	132	281	9.21e-16	76.3
Msa0664760	AT2G22770.1	33.537	164	92	4	120	268	138	299	1.08e-15	76.3

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Find 55 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAATCAACAAATCAA+TGG	0.499326	4_4:+3936244	Msa0664760:CDS
AAAGACAAAATGTATGTCTT+TGG	0.328953	4_4:-3936124	None:intergenic
AAAGCTTCAATACTTCAAGC+AGG	0.588462	4_4:+3939441	Msa0664760:CDS
AACAAATCACAAAATTCATG+TGG	0.589942	4_4:+3939549	Msa0664760:CDS
AAGTACGATGTTTAGGGGAA+TGG	0.451234	4_4:+3940916	Msa0664760:three_prime_UTR
AATCATCATCGTCAGTGTTA+AGG	0.430939	4_4:-3935931	None:intergenic
AATCTTCAACTGTTTGTCAC+TGG	0.515596	4_4:+3939735	Msa0664760:CDS
AATGTTAGATGTGAAATTGA+TGG	0.491247	4_4:-3935620	None:intergenic
AATGTTTCCTAATGACATTG+AGG	0.570707	4_4:+3940818	Msa0664760:three_prime_UTR
AATTTCACACGTTAGAAAAC+TGG	0.373995	4_4:-3940961	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTAGATGTGAAATTGATG+GGG	-	chr4_4:3935621-3935640	None:intergenic	30.0%
CTAGAACTCAAATTAACACA+AGG	-	chr4_4:3936184-3936203	None:intergenic	30.0%
ATATAATGGCAGAGAGAAAA+CGG	+	chr4_4:3936305-3936324	Msa0664760:intron	30.0%
ATCAAGATAAGATCAAGTGT+AGG	+	chr4_4:3936748-3936767	Msa0664760:intron	30.0%
TACACAATAACTAGCCAAAT+TGG	+	chr4_4:3936947-3936966	Msa0664760:intron	30.0%
TCCAATTTGGCAATTTAAGA+GGG	-	chr4_4:3937003-3937022	None:intergenic	30.0%
TTGTGTCAATTAAATTGGGA+CGG	+	chr4_4:3937624-3937643	Msa0664760:intron	30.0%
AATTGAACTTACGTATGGTA+CGG	-	chr4_4:3938095-3938114	None:intergenic	30.0%
TGGTCAAGTTCAATTATTGA+TGG	+	chr4_4:3938129-3938148	Msa0664760:intron	30.0%
AAGAGTTGCAATGAAAGAAA+GGG	-	chr4_4:3938219-3938238	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	3935583	3941025	3935583	ID=Msa0664760;Name=Msa0664760
chr4_4	mRNA	3935583	3941025	3935583	ID=Msa0664760-mRNA-1;Parent=Msa0664760;Name=Msa0664760-mRNA-1;_AED=0.08;_eAED=0.08;_QI=184\|0.5\|0.6\|1\|0.75\|0.6\|5\|408\|279
chr4_4	exon	3935583	3935802	3935583	ID=Msa0664760-mRNA-1:exon:1311;Parent=Msa0664760-mRNA-1
chr4_4	exon	3935887	3936277	3935887	ID=Msa0664760-mRNA-1:exon:1312;Parent=Msa0664760-mRNA-1
chr4_4	exon	3939439	3939829	3939439	ID=Msa0664760-mRNA-1:exon:1313;Parent=Msa0664760-mRNA-1
chr4_4	exon	3940373	3940490	3940373	ID=Msa0664760-mRNA-1:exon:1314;Parent=Msa0664760-mRNA-1
chr4_4	exon	3940714	3941025	3940714	ID=Msa0664760-mRNA-1:exon:1315;Parent=Msa0664760-mRNA-1
chr4_4	five_prime_UTR	3935583	3935766	3935583	ID=Msa0664760-mRNA-1:five_prime_utr;Parent=Msa0664760-mRNA-1
chr4_4	CDS	3935767	3935802	3935767	ID=Msa0664760-mRNA-1:cds;Parent=Msa0664760-mRNA-1
chr4_4	CDS	3935887	3936277	3935887	ID=Msa0664760-mRNA-1:cds;Parent=Msa0664760-mRNA-1
chr4_4	CDS	3939439	3939829	3939439	ID=Msa0664760-mRNA-1:cds;Parent=Msa0664760-mRNA-1
chr4_4	CDS	3940373	3940394	3940373	ID=Msa0664760-mRNA-1:cds;Parent=Msa0664760-mRNA-1
chr4_4	three_prime_UTR	3940395	3940490	3940395	ID=Msa0664760-mRNA-1:three_prime_utr;Parent=Msa0664760-mRNA-1
chr4_4	three_prime_UTR	3940714	3941025	3940714	ID=Msa0664760-mRNA-1:three_prime_utr;Parent=Msa0664760-mRNA-1

Gene Sequence

>Msa0664760

ATGGAGGAGTCATTGGGAAATTTTCATCTTGACATGGAATTGGATTGCGGTGATGATTATTTCATAGATGATTGTAACAACCTTAACACTGACGATGATGATTTTCTTAGAGAGATTTTGTTACAAACACCAGAAAGTTTTGATGTTGTTGGTAACATGGTTAAAAGTAACAGTTCAAACTCAATTGTGTCTCAACAACATCAACCACAAGAACAAGAACAAGAACAACAACATGGTTTGAAATCAAAAAAGGTTCCTCGTAAAGGTTCTTCTCCAAAGACATACATTTTGTCTTTTGACAATTCAACTATGATACCAGCTACACCAGAACCTTGTGTTAATTTGAGTTCTAGGAATAAACGTAGCCGTGAAAGTACTCAAAAAGCTGAAGTGAAAACTAATCAACAAATCAATGGAGCTAAGAAAGACAAAGCTTCAATACTTCAAGCAGGAATTGATTATGTGAAACAGCTTAAAGAACGTGTTGAGAAGCTAGAGAAACAAGAAGAAAATGTTGGGGTCACATCAATGACCCTCAACAAATCACAAAATTCATGTGGAATTAATGAAGACACAAATTCTAGCGAAACAAGTTGTGATGATGATTGTAACCATAGTATCCTTCCAGATATTGAAGCAAGAGTCATGGGAAAGGAAGTGCTTATTGAAATCCATTGTGAGAAACAAAATGGAATTGAGCTCAAATTACTTAACCATATTGAAAATCTTCAACTGTTTGTCACTGGTAGCAGTGTCTTGCCATTTGGGAAATCAACTATTTCCATCACTATAATTGCTCGGGTAAGCATCAGTAAAGTATGGGAGATGGGTGCAAAGTGA

Protein sequence

>Msa0664760

MEESLGNFHLDMELDCGDDYFIDDCNNLNTDDDDFLREILLQTPESFDVVGNMVKSNSSNSIVSQQHQPQEQEQEQQHGLKSKKVPRKGSSPKTYILSFDNSTMIPATPEPCVNLSSRNKRSRESTQKAEVKTNQQINGAKKDKASILQAGIDYVKQLKERVEKLEKQEENVGVTSMTLNKSQNSCGINEDTNSSETSCDDDCNHSILPDIEARVMGKEVLIEIHCEKQNGIELKLLNHIENLQLFVTGSSVLPFGKSTISITIIARVSISKVWEMGAK*