AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0586850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 44 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAACAACATCAAAACTTTC+TGG 0.157589 4_2:+8286908 None:intergenic
CTTGTGTTAATTTGAGTTCT+AGG 0.232838 4_2:-8286706 Msa0586850:three_prime_UTR
ATACACTCGTCAATTAATTA+AGG 0.233303 4_2:+8282349 None:intergenic
ATGACTCTTGCTTCAATATC+TGG 0.292442 4_2:+8283337 None:intergenic
ATCCATTGTGAGAAACAAAA+TGG 0.294137 4_2:-8283292 Msa0586850:three_prime_UTR
AAAGACAAAATGTATGTCTT+TGG 0.328953 4_2:+8286764 None:intergenic
GGTAGCAGTGTCTTGCCATT+TGG 0.333645 4_2:-8283217 Msa0586850:three_prime_UTR
GTAGCAGTGTCTTGCCATTT+GGG 0.353594 4_2:-8283216 Msa0586850:three_prime_UTR
AATTTCACACGTTAGAAAAC+TGG 0.357574 4_2:+8282236 None:intergenic
CAATATCTGGAAGGATACTA+TGG 0.374591 4_2:+8283350 None:intergenic
TCACTTTAGCATCTTCTTTG+AGG 0.383325 4_2:+8282534 None:intergenic
AGAAACAAGAAGAAAATGTT+GGG 0.406463 4_2:-8283465 Msa0586850:three_prime_UTR
GAAATAGTTGATTTCCCAAA+TGG 0.414232 4_2:+8283202 None:intergenic
GATTAACCCTCAATGTCATT+AGG 0.416811 4_2:+8282371 None:intergenic
TCTAATAATATATGTGAAGA+AGG 0.430273 4_2:-8282404 Msa0586850:three_prime_UTR
AATCATCATCGTCAGTGTTA+AGG 0.430939 4_2:+8286957 None:intergenic
AAGTACGATGTTTAGGGGAA+TGG 0.451234 4_2:-8282281 Msa0586850:three_prime_UTR
TTCCATCACTATAATTGCTC+GGG 0.454181 4_2:-8283182 Msa0586850:intron
TTTCCAATGGAGGAGTCATT+GGG 0.455919 4_2:-8287127 Msa0586850:intron
TTTATATTGCAGATGGGAGA+TGG 0.464639 4_2:-8282612 Msa0586850:intron
CTCAAATTAACACAAGGTTC+TGG 0.471060 4_2:+8286713 None:intergenic
TGTTCTTGTTCTTGTTCTTG+TGG 0.483186 4_2:+8286833 None:intergenic
GAGAAACAAGAAGAAAATGT+TGG 0.486811 4_2:-8283466 Msa0586850:three_prime_UTR
TTTCCATCACTATAATTGCT+CGG 0.489893 4_2:-8283183 Msa0586850:three_prime_UTR
AAAACTAATCAACAAATCAA+TGG 0.499326 4_2:-8286644 Msa0586850:three_prime_UTR
ACACAAGGTTCTGGTGTAGC+TGG 0.499575 4_2:+8286722 None:intergenic
ATGTTTCCTAATGACATTGA+GGG 0.505047 4_2:-8282377 Msa0586850:three_prime_UTR
GATATTGAAGCAAGAGTCAT+GGG 0.509819 4_2:-8283334 Msa0586850:three_prime_UTR
AATCTTCAACTGTTTGTCAC+TGG 0.515596 4_2:-8283238 Msa0586850:three_prime_UTR
CAAATCAATGGAGCTAAGAA+AGG 0.524101 4_2:-8286632 Msa0586850:intron
TACCCGAGCAATTATAGTGA+TGG 0.541857 4_2:+8283180 None:intergenic
TTATATTGCAGATGGGAGAT+GGG 0.554862 4_2:-8282611 Msa0586850:intron
AGATATTGAAGCAAGAGTCA+TGG 0.568127 4_2:-8283335 Msa0586850:three_prime_UTR
AATGTTTCCTAATGACATTG+AGG 0.570707 4_2:-8282378 Msa0586850:three_prime_UTR
CTAATAATATATGTGAAGAA+GGG 0.577707 4_2:-8282403 Msa0586850:three_prime_UTR
AAAGCTTCAATACTTCAAGC+AGG 0.588462 4_2:-8283532 Msa0586850:three_prime_UTR
AACAAATCACAAAATTCATG+TGG 0.589942 4_2:-8283424 Msa0586850:three_prime_UTR
CTCTTGCTTCAATATCTGGA+AGG 0.599921 4_2:+8283341 None:intergenic
CTAGAACTCAAATTAACACA+AGG 0.614675 4_2:+8286707 None:intergenic
GTGTTGTAGGAATTGGATTG+CGG 0.620465 4_2:-8287010 Msa0586850:intron
TGAAGCAAGAGTCATGGGAA+AGG 0.625639 4_2:-8283329 Msa0586850:three_prime_UTR
CAAGAACAAGAACAACAACA+TGG 0.670092 4_2:-8286824 Msa0586850:three_prime_UTR
GAAACAAGAAGAAAATGTTG+GGG 0.696078 4_2:-8283464 Msa0586850:three_prime_UTR
TTTGGAGAAGAACCTTTACG+AGG 0.704448 4_2:+8286782 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATATATATAAAAAAAA+TGG - chr4_2:8282980-8282999 Msa0586850:intron 0.0%
!!! TATTAAATAATTAGTTTCAT+CGG - chr4_2:8282916-8282935 Msa0586850:intron 10.0%
!!! ATTTAGTATTATATTGTTTT+GGG + chr4_2:8284004-8284023 None:intergenic 10.0%
!!! TATTTAGTATTATATTGTTT+TGG + chr4_2:8284005-8284024 None:intergenic 10.0%
!! AGAAAAATGTATAAATAAAA+GGG + chr4_2:8284068-8284087 None:intergenic 10.0%
!! AAGAAAAATGTATAAATAAA+AGG + chr4_2:8284069-8284088 None:intergenic 10.0%
!!! AATGCATTTTTTTAAATTTT+TGG + chr4_2:8284167-8284186 None:intergenic 10.0%
!!! GGTTTTAATAAAAATAATAA+GGG + chr4_2:8284569-8284588 None:intergenic 10.0%
!!! AAATGAAATGATTTTTTTTT+AGG - chr4_2:8284960-8284979 Msa0586850:intron 10.0%
!! ACTAATTATTTAATATGAGA+TGG + chr4_2:8282911-8282930 None:intergenic 15.0%
!!! ATTTTATTGATCAAAGATTA+GGG + chr4_2:8283552-8283571 None:intergenic 15.0%
!!! TATTTTATTGATCAAAGATT+AGG + chr4_2:8283553-8283572 None:intergenic 15.0%
!! AAAATTGTGTCAATTAAATT+GGG - chr4_2:8284105-8284124 Msa0586850:intron 15.0%
!!! AAAAAAATGCATTAACTTTT+TGG - chr4_2:8284174-8284193 Msa0586850:intron 15.0%
!!! GGGTTTTAATAAAAATAATA+AGG + chr4_2:8284570-8284589 None:intergenic 15.0%
!! TCATATAAAATTCAGTTATA+AGG + chr4_2:8284712-8284731 None:intergenic 15.0%
!! TCTGATTAATAAAGAAATAA+AGG - chr4_2:8285442-8285461 Msa0586850:intron 15.0%
!! ATATTTCTTCAAATAACTAA+GGG + chr4_2:8285587-8285606 None:intergenic 15.0%
!! AATATTTCTTCAAATAACTA+AGG + chr4_2:8285588-8285607 None:intergenic 15.0%
!! AAAAAAATTGATACAAAAGA+GGG + chr4_2:8285773-8285792 None:intergenic 15.0%
!! AAAAAAAATTGATACAAAAG+AGG + chr4_2:8285774-8285793 None:intergenic 15.0%
!! ATTACTCAAAATTCTAATTT+AGG + chr4_2:8286559-8286578 None:intergenic 15.0%
!!! AATTTCATGTTTTGAATTAT+AGG - chr4_2:8286904-8286923 Msa0586850:three_prime_UTR 15.0%
!!! TTTTTAGTGTTAATTTAGTT+TGG - chr4_2:8286931-8286950 Msa0586850:three_prime_UTR 15.0%
!!! TATATAATTTTGTGTGTTGT+AGG - chr4_2:8282349-8282368 Msa0586850:three_prime_UTR 20.0%
!! AAAACTAATCAACAAATCAA+TGG - chr4_2:8282728-8282747 Msa0586850:intron 20.0%
!! AATTATTTAATATGAGATGG+AGG + chr4_2:8282908-8282927 None:intergenic 20.0%
!!! CGGTTAATATATTTCATTTT+TGG + chr4_2:8283166-8283185 None:intergenic 20.0%
!!! TCGAATTTTTAAGAATAAAC+AGG + chr4_2:8283389-8283408 None:intergenic 20.0%
!! TATTGTGTAGATTATTTGAA+AGG + chr4_2:8283423-8283442 None:intergenic 20.0%
!!! TGATTTTGATAATCATGAAA+AGG - chr4_2:8283785-8283804 Msa0586850:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr4_2:8283935-8283954 None:intergenic 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG + chr4_2:8283971-8283990 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr4_2:8283972-8283991 None:intergenic 20.0%
!! CAAAATTGTGTCAATTAAAT+TGG - chr4_2:8284104-8284123 Msa0586850:intron 20.0%
!! AAAAATAATAAGGGTAAAAC+TGG + chr4_2:8284560-8284579 None:intergenic 20.0%
!! GGTCATAAATAAATCATAAA+GGG + chr4_2:8284600-8284619 None:intergenic 20.0%
!! TGGTCATAAATAAATCATAA+AGG + chr4_2:8284601-8284620 None:intergenic 20.0%
!! ATGAAACTAAATAAATCGTA+CGG + chr4_2:8284641-8284660 None:intergenic 20.0%
!!! GAATTTTATATGAATGTATG+TGG - chr4_2:8284719-8284738 Msa0586850:intron 20.0%
!!! AAACCCAAGATTTTTTATTT+AGG + chr4_2:8285316-8285335 None:intergenic 20.0%
!!! AATGTCAATTTCAAGTTTAA+TGG - chr4_2:8285629-8285648 Msa0586850:intron 20.0%
!! TAATACGATGAACTAAAATA+AGG + chr4_2:8285661-8285680 None:intergenic 20.0%
!!! AATTTCATTTCTTTTCTCTT+AGG - chr4_2:8285742-8285761 Msa0586850:intron 20.0%
!! TGTCAATTTGAAAAAGAAAA+AGG - chr4_2:8286424-8286443 Msa0586850:intron 20.0%
!! ATATTACTTTATATTGCAGA+TGG - chr4_2:8286753-8286772 Msa0586850:three_prime_UTR 20.0%
!! TATTACTTTATATTGCAGAT+GGG - chr4_2:8286754-8286773 Msa0586850:three_prime_UTR 20.0%
!! TCTAATAATATATGTGAAGA+AGG - chr4_2:8286968-8286987 Msa0586850:three_prime_UTR 20.0%
!! CTAATAATATATGTGAAGAA+GGG - chr4_2:8286969-8286988 Msa0586850:three_prime_UTR 20.0%
!! ACATGGTTTGAAATCAAAAA+AGG - chr4_2:8282565-8282584 Msa0586850:three_prime_UTR 25.0%
! AAAGACAAAATGTATGTCTT+TGG + chr4_2:8282611-8282630 None:intergenic 25.0%
!! ACAGTGTATTGATCATATAA+TGG - chr4_2:8282775-8282794 Msa0586850:intron 25.0%
! GGAGGTAGTATAATTTATTA+GGG + chr4_2:8282890-8282909 None:intergenic 25.0%
! TGGAGGTAGTATAATTTATT+AGG + chr4_2:8282891-8282910 None:intergenic 25.0%
!! TCATATTTTTCTGAGTTGTT+TGG + chr4_2:8283593-8283612 None:intergenic 25.0%
! TAATCATACTGACGTATATA+CGG + chr4_2:8283853-8283872 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr4_2:8283936-8283955 None:intergenic 25.0%
! TGTATAAATAAAAGGGAAAG+TGG + chr4_2:8284061-8284080 None:intergenic 25.0%
! TGTATTGTTAAAATCACATG+TGG - chr4_2:8284257-8284276 Msa0586850:intron 25.0%
! TAAACAATCTCTTTCAACTA+AGG - chr4_2:8284328-8284347 Msa0586850:intron 25.0%
! AAACAATCTCTTTCAACTAA+GGG - chr4_2:8284329-8284348 Msa0586850:intron 25.0%
!! TTGATAAAATAAGCACTGTT+TGG - chr4_2:8284412-8284431 Msa0586850:intron 25.0%
!! AAATCATAAAGGGTATATGT+GGG + chr4_2:8284590-8284609 None:intergenic 25.0%
!! TAAATCATAAAGGGTATATG+TGG + chr4_2:8284591-8284610 None:intergenic 25.0%
! TGAAACTAAATAAATCGTAC+GGG + chr4_2:8284640-8284659 None:intergenic 25.0%
! TTGTACCCAGAAAAAAAAAA+CGG + chr4_2:8284751-8284770 None:intergenic 25.0%
! AAAGAATGTTCATCTACTTT+AGG - chr4_2:8284892-8284911 Msa0586850:intron 25.0%
!!! TTTTTTATTTAGGCTCTGTT+TGG + chr4_2:8285306-8285325 None:intergenic 25.0%
! AGAGCCTAAATAAAAAATCT+TGG - chr4_2:8285309-8285328 Msa0586850:intron 25.0%
! GAGCCTAAATAAAAAATCTT+GGG - chr4_2:8285310-8285329 Msa0586850:intron 25.0%
! AGAAACAAGAAGAAAATGTT+GGG - chr4_2:8285907-8285926 Msa0586850:intron 25.0%
!!! TGAATTTTGTGATTTGTTGA+GGG + chr4_2:8285946-8285965 None:intergenic 25.0%
!!! ATGAATTTTGTGATTTGTTG+AGG + chr4_2:8285947-8285966 None:intergenic 25.0%
! AACAAATCACAAAATTCATG+TGG - chr4_2:8285948-8285967 Msa0586850:intron 25.0%
!! ACAGTTGAAGATTTTCAATA+TGG + chr4_2:8286127-8286146 None:intergenic 25.0%
!!! CTTTTTCAAATTGACATCAA+TGG + chr4_2:8286420-8286439 None:intergenic 25.0%
!!! CGCTATTTTACGTATAAAAA+CGG - chr4_2:8286515-8286534 Msa0586850:intron 25.0%
! ATTTAGCACTTATCAAAGTA+TGG - chr4_2:8286591-8286610 Msa0586850:intron 25.0%
! AAGTATGGTTGAGAAAAATA+TGG - chr4_2:8286606-8286625 Msa0586850:intron 25.0%
!!! GCTCAATTTTTTTTGAGATA+TGG - chr4_2:8286630-8286649 Msa0586850:intron 25.0%
! AAAAAACAAGTTCTATTGTG+TGG - chr4_2:8286881-8286900 Msa0586850:three_prime_UTR 25.0%
! ATACACTCGTCAATTAATTA+AGG + chr4_2:8287026-8287045 None:intergenic 25.0%
!!! ACATCGTACTTTTTTGTTTA+TGG + chr4_2:8287082-8287101 None:intergenic 25.0%
!! AACAAAAAAGTACGATGTTT+AGG - chr4_2:8287084-8287103 Msa0586850:intron 25.0%
!! ACAAAAAAGTACGATGTTTA+GGG - chr4_2:8287085-8287104 Msa0586850:intron 25.0%
! AGCTCAATTCAATTTTCCAA+TGG - chr4_2:8282232-8282251 Msa0586850:three_prime_UTR 30.0%
! TCAATTCAATTTTCCAATGG+AGG - chr4_2:8282235-8282254 Msa0586850:three_prime_UTR 30.0%
! ATTTTGTGTGTTGTAGGAAT+TGG - chr4_2:8282355-8282374 Msa0586850:three_prime_UTR 30.0%
!!! TTTTGATGTTGTTGGTAACA+TGG - chr4_2:8282472-8282491 Msa0586850:three_prime_UTR 30.0%
CTAGAACTCAAATTAACACA+AGG + chr4_2:8282668-8282687 None:intergenic 30.0%
! CTTGTGTTAATTTGAGTTCT+AGG - chr4_2:8282666-8282685 Msa0586850:intron 30.0%
ATATAATGGCAGAGAGAAAA+CGG - chr4_2:8282789-8282808 Msa0586850:intron 30.0%
ATCAAGATAAGATCAAGTGT+AGG - chr4_2:8283234-8283253 Msa0586850:three_prime_UTR 30.0%
! TGTCTTTTGATCTTTAGTTG+TGG + chr4_2:8283294-8283313 None:intergenic 30.0%
TACACAATAACTAGCCAAAT+TGG - chr4_2:8283434-8283453 Msa0586850:three_prime_UTR 30.0%
! AGTCTAGTTTACATCCAATT+TGG + chr4_2:8283451-8283470 None:intergenic 30.0%
TCCAATTTGGCAATTTAAGA+GGG + chr4_2:8283490-8283509 None:intergenic 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG + chr4_2:8283957-8283976 None:intergenic 30.0%
! TTGAAATGGGTCAGTTATTT+TGG + chr4_2:8283958-8283977 None:intergenic 30.0%
TTGTGTCAATTAAATTGGGA+CGG - chr4_2:8284109-8284128 Msa0586850:intron 30.0%
! TAAAAAAAGGTACAATCACG+TGG + chr4_2:8284218-8284237 None:intergenic 30.0%
! CTATAAGCTATAAGCTCTTT+TGG + chr4_2:8284372-8284391 None:intergenic 30.0%
!!! TTGCTTCCGTTTTTTTTTTC+TGG - chr4_2:8284742-8284761 Msa0586850:intron 30.0%
!!! TGCTTCCGTTTTTTTTTTCT+GGG - chr4_2:8284743-8284762 Msa0586850:intron 30.0%
TCTAGTTGCTTACATTAGTA+TGG - chr4_2:8284772-8284791 Msa0586850:intron 30.0%
! AGAGTGTTTGGTAAAATTAG+CGG + chr4_2:8285161-8285180 None:intergenic 30.0%
! GATAAGCTAATTAGAGTGTT+TGG + chr4_2:8285173-8285192 None:intergenic 30.0%
CCAAAGTGATATACATTAGA+GGG - chr4_2:8285465-8285484 Msa0586850:intron 30.0%
ATTTCGAACAAGTCATCATT+CGG - chr4_2:8285534-8285553 Msa0586850:intron 30.0%
ACATGTGCAAATCAACTATA+TGG - chr4_2:8285703-8285722 Msa0586850:intron 30.0%
GAGAAACAAGAAGAAAATGT+TGG - chr4_2:8285906-8285925 Msa0586850:intron 30.0%
GAAACAAGAAGAAAATGTTG+GGG - chr4_2:8285908-8285927 Msa0586850:intron 30.0%
ATCCATTGTGAGAAACAAAA+TGG - chr4_2:8286080-8286099 Msa0586850:intron 30.0%
!! TTCCATTTTGTTTCTCACAA+TGG + chr4_2:8286085-8286104 None:intergenic 30.0%
! GAAATAGTTGATTTCCCAAA+TGG + chr4_2:8286173-8286192 None:intergenic 30.0%
TTTCCATCACTATAATTGCT+CGG - chr4_2:8286189-8286208 Msa0586850:intron 30.0%
TATTCATGTTCTTGATGAGT+TGG - chr4_2:8286232-8286251 Msa0586850:intron 30.0%
! GAATTCCTCAAATTCTAAGA+TGG - chr4_2:8286275-8286294 Msa0586850:intron 30.0%
TTTCAAATATTGCCCTACAA+TGG + chr4_2:8286319-8286338 None:intergenic 30.0%
!!! CACGATCATCATTGTTTTTA+TGG - chr4_2:8286380-8286399 Msa0586850:intron 30.0%
AATGTTTCCTAATGACATTG+AGG - chr4_2:8286994-8287013 Msa0586850:three_prime_UTR 30.0%
ATGTTTCCTAATGACATTGA+GGG - chr4_2:8286995-8287014 Msa0586850:three_prime_UTR 30.0%
!! TTTTTGTTTATGGACTGTCT+AGG + chr4_2:8287072-8287091 None:intergenic 30.0%
! CAAAAAAGTACGATGTTTAG+GGG - chr4_2:8287086-8287105 Msa0586850:intron 30.0%
AATTTCACACGTTAGAAAAC+TGG + chr4_2:8287139-8287158 None:intergenic 30.0%
! GGGAAATTTTCATCTTGACA+TGG - chr4_2:8282265-8282284 Msa0586850:three_prime_UTR 35.0%
AATCATCATCGTCAGTGTTA+AGG + chr4_2:8282418-8282437 None:intergenic 35.0%
CCAACAACATCAAAACTTTC+TGG + chr4_2:8282467-8282486 None:intergenic 35.0%
!! CCAGAAAGTTTTGATGTTGT+TGG - chr4_2:8282464-8282483 Msa0586850:three_prime_UTR 35.0%
TGTTCTTGTTCTTGTTCTTG+TGG + chr4_2:8282542-8282561 None:intergenic 35.0%
CAAGAACAAGAACAACAACA+TGG - chr4_2:8282548-8282567 Msa0586850:three_prime_UTR 35.0%
TCAAAAAAGGTTCCTCGTAA+AGG - chr4_2:8282578-8282597 Msa0586850:three_prime_UTR 35.0%
CTCAAATTAACACAAGGTTC+TGG + chr4_2:8282662-8282681 None:intergenic 35.0%
!!! CAGCTTTTTGAGTACTTTCA+CGG + chr4_2:8282703-8282722 None:intergenic 35.0%
CAAATCAATGGAGCTAAGAA+AGG - chr4_2:8282740-8282759 Msa0586850:intron 35.0%
ACAAAACTCATACAAGCGAT+AGG - chr4_2:8283259-8283278 Msa0586850:three_prime_UTR 35.0%
CAAAACTCATACAAGCGATA+GGG - chr4_2:8283260-8283279 Msa0586850:three_prime_UTR 35.0%
! CTTTTGATCTTTAGTTGTGG+TGG + chr4_2:8283291-8283310 None:intergenic 35.0%
ACCCTCTTAAATTGCCAAAT+TGG - chr4_2:8283486-8283505 Msa0586850:three_prime_UTR 35.0%
CTCCAATTTGGCAATTTAAG+AGG + chr4_2:8283491-8283510 None:intergenic 35.0%
!! AAAGAGTATCCGTCCTATTT+CGG - chr4_2:8283638-8283657 Msa0586850:intron 35.0%
TATGTGTTTCCGAAATAGGA+CGG + chr4_2:8283650-8283669 None:intergenic 35.0%
CTTGTATGTGTTTCCGAAAT+AGG + chr4_2:8283654-8283673 None:intergenic 35.0%
TGATAACAATGATACTCCAC+TGG - chr4_2:8283813-8283832 Msa0586850:intron 35.0%
ACAATCACGTGGTTTATGAT+GGG + chr4_2:8284207-8284226 None:intergenic 35.0%
TACAATCACGTGGTTTATGA+TGG + chr4_2:8284208-8284227 None:intergenic 35.0%
GCTCTGTTTGGTAAAAATAG+CGG + chr4_2:8285294-8285313 None:intergenic 35.0%
GCCAAAGTGATATACATTAG+AGG - chr4_2:8285464-8285483 Msa0586850:intron 35.0%
CCCTCTAATGTATATCACTT+TGG + chr4_2:8285468-8285487 None:intergenic 35.0%
AAAGCTTCAATACTTCAAGC+AGG - chr4_2:8285840-8285859 Msa0586850:intron 35.0%
CAATATCTGGAAGGATACTA+TGG + chr4_2:8286025-8286044 None:intergenic 35.0%
ATGACTCTTGCTTCAATATC+TGG + chr4_2:8286038-8286057 None:intergenic 35.0%
AGATATTGAAGCAAGAGTCA+TGG - chr4_2:8286037-8286056 Msa0586850:intron 35.0%
GATATTGAAGCAAGAGTCAT+GGG - chr4_2:8286038-8286057 Msa0586850:intron 35.0%
AATCTTCAACTGTTTGTCAC+TGG - chr4_2:8286134-8286153 Msa0586850:intron 35.0%
TTCCATCACTATAATTGCTC+GGG - chr4_2:8286190-8286209 Msa0586850:intron 35.0%
TTTATATTGCAGATGGGAGA+TGG - chr4_2:8286760-8286779 Msa0586850:three_prime_UTR 35.0%
TTATATTGCAGATGGGAGAT+GGG - chr4_2:8286761-8286780 Msa0586850:three_prime_UTR 35.0%
TCACTTTAGCATCTTCTTTG+AGG + chr4_2:8286841-8286860 None:intergenic 35.0%
GATTAACCCTCAATGTCATT+AGG + chr4_2:8287004-8287023 None:intergenic 35.0%
! TTTTCCAATGGAGGAGTCAT+TGG - chr4_2:8282244-8282263 Msa0586850:three_prime_UTR 40.0%
TTTCCAATGGAGGAGTCATT+GGG - chr4_2:8282245-8282264 Msa0586850:three_prime_UTR 40.0%
GTGTTGTAGGAATTGGATTG+CGG - chr4_2:8282362-8282381 Msa0586850:three_prime_UTR 40.0%
TTTGGAGAAGAACCTTTACG+AGG + chr4_2:8282593-8282612 None:intergenic 40.0%
TCTGAGCAAGTTCTCCAATT+TGG + chr4_2:8283503-8283522 None:intergenic 40.0%
!! GTTTGGTCTTCGATGGATTA+TGG + chr4_2:8283576-8283595 None:intergenic 40.0%
TAGGACGGATACTCTTTGTT+CGG + chr4_2:8283635-8283654 None:intergenic 40.0%
CGTATATACGGTATGACTGA+AGG + chr4_2:8283841-8283860 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+AGG + chr4_2:8283921-8283940 None:intergenic 40.0%
TGTCAATTAAATTGGGACGG+AGG - chr4_2:8284112-8284131 Msa0586850:intron 40.0%
GTCAATTAAATTGGGACGGA+GGG - chr4_2:8284113-8284132 Msa0586850:intron 40.0%
CTTTCAACTAAGGGTCTGTT+TGG - chr4_2:8284338-8284357 Msa0586850:intron 40.0%
AACTAAGGGTCTGTTTGGTA+AGG - chr4_2:8284343-8284362 Msa0586850:intron 40.0%
TTTATGACCACACACCTTCA+CGG - chr4_2:8284611-8284630 Msa0586850:intron 40.0%
ACGTCACTGCATTCTTGAAA+GGG + chr4_2:8285343-8285362 None:intergenic 40.0%
AACGTCACTGCATTCTTGAA+AGG + chr4_2:8285344-8285363 None:intergenic 40.0%
CAGTGACGTTAAATAGCTTG+AGG - chr4_2:8285354-8285373 Msa0586850:intron 40.0%
ACGTTAAATAGCTTGAGGTG+AGG - chr4_2:8285359-8285378 Msa0586850:intron 40.0%
! GTGAGGTTTGTCACTTATTC+TGG - chr4_2:8285376-8285395 Msa0586850:intron 40.0%
! GAGGGAAGCTGTAGAATTTT+TGG - chr4_2:8285483-8285502 Msa0586850:intron 40.0%
CTCTTGCTTCAATATCTGGA+AGG + chr4_2:8286034-8286053 None:intergenic 40.0%
TACCCGAGCAATTATAGTGA+TGG + chr4_2:8286195-8286214 None:intergenic 40.0%
GCGATCCATCTTAGAATTTG+AGG + chr4_2:8286283-8286302 None:intergenic 40.0%
!! AGATGGATCGCATTGATTGA+CGG - chr4_2:8286292-8286311 Msa0586850:intron 40.0%
ATTGATTGACGGTCCATTGT+AGG - chr4_2:8286303-8286322 Msa0586850:intron 40.0%
TTGATTGACGGTCCATTGTA+GGG - chr4_2:8286304-8286323 Msa0586850:intron 40.0%
AAGTACGATGTTTAGGGGAA+TGG - chr4_2:8287091-8287110 Msa0586850:intron 40.0%
ACTGGAGAGAAAAACACAAG+AGG + chr4_2:8287121-8287140 None:intergenic 40.0%
TTTCCCAATGACTCCTCCAT+TGG + chr4_2:8282251-8282270 None:intergenic 45.0%
GCACTTTCAGCTACTATTCC+TGG - chr4_2:8282839-8282858 Msa0586850:intron 45.0%
! TACTATTCCTGGCTTGAGCA+AGG - chr4_2:8282850-8282869 Msa0586850:intron 45.0%
CAATTTACCTTGCTCAAGCC+AGG + chr4_2:8282860-8282879 None:intergenic 45.0%
! CTGGCTTGAGCAAGGTAAAT+TGG - chr4_2:8282858-8282877 Msa0586850:intron 45.0%
! TGTTGCTTACGGGGCATTAA+CGG + chr4_2:8283186-8283205 None:intergenic 45.0%
!! AGCACCCTATGTGTTGCTTA+CGG + chr4_2:8283197-8283216 None:intergenic 45.0%
! CTGAGTTGTTTGGTCTTCGA+TGG + chr4_2:8283583-8283602 None:intergenic 45.0%
AGGACGGATACTCTTTGTTC+GGG + chr4_2:8283634-8283653 None:intergenic 45.0%
ATGGGTCAGTTATTCCAGGA+CGG + chr4_2:8283917-8283936 None:intergenic 45.0%
! ATCACGTGGTTTATGATGGG+CGG + chr4_2:8284204-8284223 None:intergenic 45.0%
CTATAAGCTCAAACGCTGCT+TGG + chr4_2:8284514-8284533 None:intergenic 45.0%
TGAAGCAAGAGTCATGGGAA+AGG - chr4_2:8286043-8286062 Msa0586850:intron 45.0%
! GTAGCAGTGTCTTGCCATTT+GGG - chr4_2:8286156-8286175 Msa0586850:intron 45.0%
!!! ACATTTTTATATATAAAAAA+AGG + chr4_2:8284231-8284250 None:intergenic 5.0%
!!! TTTTTTTATATATAAAAATG+TGG - chr4_2:8284230-8284249 Msa0586850:intron 5.0%
! ACACAAGGTTCTGGTGTAGC+TGG + chr4_2:8282653-8282672 None:intergenic 50.0%
ATGCCCCGTAAGCAACACAT+AGG - chr4_2:8283189-8283208 Msa0586850:three_prime_UTR 50.0%
TGCCCCGTAAGCAACACATA+GGG - chr4_2:8283190-8283209 Msa0586850:three_prime_UTR 50.0%
!! CACCCTATGTGTTGCTTACG+GGG + chr4_2:8283195-8283214 None:intergenic 50.0%
!! GCACCCTATGTGTTGCTTAC+GGG + chr4_2:8283196-8283215 None:intergenic 50.0%
CGGATACTCTTTGTTCGGGT+GGG + chr4_2:8283630-8283649 None:intergenic 50.0%
ACGGATACTCTTTGTTCGGG+TGG + chr4_2:8283631-8283650 None:intergenic 50.0%
GGTATGACTGAAGGATCCAG+TGG + chr4_2:8283832-8283851 None:intergenic 50.0%
ACGGAGGGAGTAATAGGACA+TGG + chr4_2:8283898-8283917 None:intergenic 50.0%
GTCAGTTATTCCAGGACGGA+GGG + chr4_2:8283913-8283932 None:intergenic 50.0%
!! TCACGTGGTTTATGATGGGC+GGG + chr4_2:8284203-8284222 None:intergenic 50.0%
GGTAGCAGTGTCTTGCCATT+TGG - chr4_2:8286155-8286174 Msa0586850:intron 50.0%
TCCTATTACTCCCTCCGTCC+TGG - chr4_2:8283900-8283919 Msa0586850:intron 55.0%
TCCAGGACGGAGGGAGTAAT+AGG + chr4_2:8283904-8283923 None:intergenic 55.0%
GGTCAGTTATTCCAGGACGG+AGG + chr4_2:8283914-8283933 None:intergenic 55.0%
!! CACGTGGTTTATGATGGGCG+GGG + chr4_2:8284202-8284221 None:intergenic 55.0%
AATCGTACGGGACTCCGTGA+AGG + chr4_2:8284628-8284647 None:intergenic 55.0%
! CGGGACTCCGTGAAGGTGTG+TGG + chr4_2:8284621-8284640 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 8282194 8287200 8282194 ID=Msa0586850;Name=Msa0586850
chr4_2 mRNA 8282194 8287200 8282194 ID=Msa0586850-mRNA-1;Parent=Msa0586850;Name=Msa0586850-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.75|0.4|1|0.75|0.6|5|1198|15
chr4_2 exon 8282194 8282622 8282194 ID=Msa0586850-mRNA-1:exon:2192;Parent=Msa0586850-mRNA-1
chr4_2 exon 8283183 8283556 8283183 ID=Msa0586850-mRNA-1:exon:2191;Parent=Msa0586850-mRNA-1
chr4_2 exon 8286633 8287023 8286633 ID=Msa0586850-mRNA-1:exon:2190;Parent=Msa0586850-mRNA-1
chr4_2 exon 8287108 8287142 8287108 ID=Msa0586850-mRNA-1:exon:2189;Parent=Msa0586850-mRNA-1
chr4_2 exon 8287184 8287200 8287184 ID=Msa0586850-mRNA-1:exon:2188;Parent=Msa0586850-mRNA-1
chr4_2 CDS 8287184 8287200 8287184 ID=Msa0586850-mRNA-1:cds;Parent=Msa0586850-mRNA-1
chr4_2 CDS 8287112 8287142 8287112 ID=Msa0586850-mRNA-1:cds;Parent=Msa0586850-mRNA-1
chr4_2 three_prime_UTR 8287108 8287111 8287108 ID=Msa0586850-mRNA-1:three_prime_utr;Parent=Msa0586850-mRNA-1
chr4_2 three_prime_UTR 8286633 8287023 8286633 ID=Msa0586850-mRNA-1:three_prime_utr;Parent=Msa0586850-mRNA-1
chr4_2 three_prime_UTR 8283183 8283556 8283183 ID=Msa0586850-mRNA-1:three_prime_utr;Parent=Msa0586850-mRNA-1
chr4_2 three_prime_UTR 8282194 8282622 8282194 ID=Msa0586850-mRNA-1:three_prime_utr;Parent=Msa0586850-mRNA-1
Gene Sequence

>Msa0586850

AAAACATCACAACACAATGGAGGAGTCATTGGGAAATTTTCATCTTGA

Protein sequence

>Msa0586850

KTSQHNGGVIGKFSS*