AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0830390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0830390 MtrunA17_Chr5g0412271 90.351 228 6 2 1 212 1 228 4.46e-144 400
Msa0830390 MtrunA17_Chr5g0412461 84.581 227 20 2 1 212 1 227 1.27e-134 377
Msa0830390 MtrunA17_Chr5g0427401 50.885 226 92 6 1 210 1 223 1.12e-63 197
Msa0830390 MtrunA17_Chr4g0049901 44.811 212 114 2 1 210 27 237 6.97e-51 164
Msa0830390 MtrunA17_Chr2g0279821 45.860 157 82 2 1 156 1 155 1.42e-37 130
Msa0830390 MtrunA17_Chr4g0049541 44.872 156 85 1 1 156 1 155 1.44e-36 127
Msa0830390 MtrunA17_Chr5g0411691 46.203 158 79 5 1 156 1 154 5.23e-36 126
Msa0830390 MtrunA17_Chr2g0284911 41.718 163 95 0 1 163 16 178 4.18e-34 122
Msa0830390 MtrunA17_Chr8g0351031 35.681 213 133 3 1 209 1 213 1.57e-33 119
Msa0830390 MtrunA17_Chr3g0077501 41.379 174 66 3 1 156 1 156 1.67e-33 119
Msa0830390 MtrunA17_Chr3g0097101 44.025 159 83 2 1 156 16 171 1.72e-33 120
Msa0830390 MtrunA17_Chr8g0380021 40.361 166 99 0 1 166 17 182 2.04e-33 120
Msa0830390 MtrunA17_Chr7g0220121 37.915 211 113 5 1 195 1 209 2.82e-33 120
Msa0830390 MtrunA17_Chr4g0061691 45.625 160 80 4 1 156 1 157 1.01e-32 117
Msa0830390 MtrunA17_Chr5g0420081 44.099 161 89 1 1 160 1 161 2.13e-32 117
Msa0830390 MtrunA17_Chr8g0366231 44.937 158 84 3 1 156 1 157 2.38e-31 114
Msa0830390 MtrunA17_Chr4g0061671 40.127 157 91 2 1 156 1 155 4.04e-31 112
Msa0830390 MtrunA17_Chr7g0246431 42.262 168 83 4 1 161 1 161 7.01e-31 112
Msa0830390 MtrunA17_Chr8g0351041 41.104 163 91 3 1 160 1 161 9.17e-31 110
Msa0830390 MtrunA17_Chr5g0420091 43.038 158 87 3 1 156 1 157 9.98e-31 112
Msa0830390 MtrunA17_Chr8g0351051 42.138 159 86 2 1 156 1 156 1.83e-30 112
Msa0830390 MtrunA17_Chr6g0455511 44.025 159 83 3 1 156 1 156 6.74e-30 111
Msa0830390 MtrunA17_Chr7g0220111 41.401 157 90 2 1 156 1 156 3.68e-29 109
Msa0830390 MtrunA17_Chr4g0057151 37.981 208 109 7 1 195 1 201 1.22e-28 106
Msa0830390 MtrunA17_Chr1g0164791 38.150 173 78 3 1 156 1 161 2.54e-28 106
Msa0830390 MtrunA17_Chr3g0125241 44.218 147 73 3 1 144 26 166 4.12e-28 105
Msa0830390 MtrunA17_Chr3g0122251 39.521 167 83 3 1 156 1 160 1.40e-27 105
Msa0830390 MtrunA17_Chr4g0020221 43.195 169 92 2 1 165 1 169 2.28e-27 104
Msa0830390 MtrunA17_Chr6g0474371 38.922 167 90 3 1 160 1 162 2.81e-27 102
Msa0830390 MtrunA17_Chr1g0204111 39.634 164 86 3 1 157 17 174 1.31e-26 102
Msa0830390 MtrunA17_Chr3g0142191 43.902 164 72 6 1 156 1 152 3.69e-26 100
Msa0830390 MtrunA17_Chr1g0159661 42.754 138 70 3 1 135 1 132 3.47e-25 97.1
Msa0830390 MtrunA17_Chr4g0018421 39.375 160 91 2 1 156 1 158 1.58e-24 95.9
Msa0830390 MtrunA17_Chr1g0173161 72.881 59 16 0 1 59 1 59 1.26e-23 90.1
Msa0830390 MtrunA17_Chr2g0308251 69.492 59 18 0 1 59 1 59 3.54e-23 89.0
Msa0830390 MtrunA17_Chr3g0134451 68.571 70 21 1 1 69 1 70 1.61e-22 92.8
Msa0830390 MtrunA17_Chr5g0404951 37.059 170 88 6 1 160 1 161 1.49e-21 88.6
Msa0830390 MtrunA17_Chr7g0246381 66.102 59 20 0 1 59 1 59 4.87e-21 83.2
Msa0830390 MtrunA17_Chr8g0377561 65.517 58 20 0 1 58 1 58 9.87e-21 83.2
Msa0830390 MtrunA17_Chr5g0427921 62.712 59 22 0 1 59 1 59 1.45e-20 81.6
Msa0830390 MtrunA17_Chr5g0425191 65.517 58 20 0 1 58 1 58 1.71e-19 80.1
Msa0830390 MtrunA17_Chr2g0292791 30.049 203 125 6 3 197 10 203 2.90e-19 82.8
Msa0830390 MtrunA17_Chr1g0206721 30.622 209 114 7 2 195 9 201 3.35e-19 82.8
Msa0830390 MtrunA17_Chr4g0044071 62.069 58 22 0 1 58 1 58 6.37e-19 79.0
Msa0830390 MtrunA17_Chr1g0206991 33.714 175 93 7 2 166 9 170 1.79e-18 79.3
Msa0830390 MtrunA17_Chr3g0099421 30.244 205 118 7 3 195 35 226 3.11e-18 80.5
Msa0830390 MtrunA17_Chr2g0325971 49.254 67 34 0 3 69 10 76 4.18e-18 79.3
Msa0830390 MtrunA17_Chr1g0208561 48.529 68 35 0 2 69 9 76 4.93e-18 79.3
Msa0830390 MtrunA17_Chr3g0089141 48.529 68 35 0 2 69 9 76 6.73e-18 79.0
Msa0830390 MtrunA17_Chr8g0355091 35.556 135 71 5 2 132 9 131 1.51e-17 78.2
Msa0830390 MtrunA17_Chr3g0099411 30.457 197 111 7 2 195 9 182 1.71e-17 77.8
Msa0830390 MtrunA17_Chr1g0206701 30.583 206 118 7 2 195 9 201 3.89e-17 77.0
Msa0830390 MtrunA17_Chr1g0208581 49.254 67 34 0 2 68 9 75 5.18e-17 76.6
Msa0830390 MtrunA17_Chr1g0166611 58.065 62 24 1 13 74 17 76 6.74e-17 73.9
Msa0830390 MtrunA17_Chr1g0187361 48.529 68 35 0 2 69 9 76 1.92e-16 75.1
Msa0830390 MtrunA17_Chr1g0149391 52.857 70 32 1 2 71 9 77 2.20e-16 75.1
Msa0830390 MtrunA17_Chr5g0419601 50.725 69 34 0 1 69 8 76 2.36e-16 75.1
Msa0830390 MtrunA17_Chr1g0188671 50.000 68 34 0 2 69 47 114 2.57e-16 75.5
Msa0830390 MtrunA17_Chr4g0052061 34.559 136 81 4 1 132 1 132 3.03e-16 72.8
Msa0830390 MtrunA17_Chr5g0422421 51.429 70 33 1 2 71 9 77 3.37e-16 74.7
Msa0830390 MtrunA17_Chr4g0052081 33.803 142 80 4 1 132 1 138 3.42e-16 73.2
Msa0830390 MtrunA17_Chr2g0317451 50.000 68 34 0 2 69 9 76 3.74e-16 74.3
Msa0830390 MtrunA17_Chr2g0317481 50.000 68 34 0 2 69 9 76 4.05e-16 74.3
Msa0830390 MtrunA17_Chr8g0379021 50.000 68 34 0 2 69 12 79 5.24e-16 72.8
Msa0830390 MtrunA17_Chr5g0422941 50.746 67 33 0 2 68 9 75 1.78e-15 72.4
Msa0830390 MtrunA17_Chr8g0357771 46.154 65 35 0 1 65 1 65 3.44e-15 70.9
Msa0830390 MtrunA17_Chr8g0376821 43.478 69 39 0 1 69 1 69 3.59e-15 70.5
Msa0830390 MtrunA17_Chr3g0085241 31.034 174 102 6 1 166 40 203 3.85e-15 72.0
Msa0830390 MtrunA17_Chr3g0119901 30.994 171 106 6 1 166 8 171 4.04e-15 70.9
Msa0830390 MtrunA17_Chr4g0060841 33.136 169 77 6 1 138 1 164 4.20e-15 72.8
Msa0830390 MtrunA17_Chr2g0300441 46.970 66 35 0 4 69 11 76 4.33e-15 71.6
Msa0830390 MtrunA17_Chr5g0417661 52.830 53 25 0 1 53 56 108 8.98e-15 68.2
Msa0830390 MtrunA17_Chr4g0018951 55.357 56 25 0 14 69 24 79 9.04e-15 69.3
Msa0830390 MtrunA17_Chr2g0333981 46.377 69 37 0 1 69 11 79 9.76e-15 69.3
Msa0830390 MtrunA17_Chr3g0089151 45.588 68 37 0 2 69 9 76 1.05e-14 68.2
Msa0830390 MtrunA17_Chr1g0175611 42.029 69 40 0 1 69 1 69 1.77e-14 68.6
Msa0830390 MtrunA17_Chr1g0169761 48.387 62 32 0 1 62 1 62 1.88e-14 68.6
Msa0830390 MtrunA17_Chr1g0180591 37.234 94 58 1 1 93 1 94 2.59e-14 68.2
Msa0830390 MtrunA17_Chr2g0300421 46.154 65 35 0 2 66 9 73 3.07e-14 68.2
Msa0830390 MtrunA17_Chr8g0356071 41.667 84 48 1 1 83 1 84 5.73e-14 67.0
Msa0830390 MtrunA17_Chr4g0074101 36.275 102 56 2 1 93 1 102 9.00e-14 67.0
Msa0830390 MtrunA17_Chr1g0175601 46.774 62 33 0 1 62 1 62 9.74e-14 66.6
Msa0830390 MtrunA17_Chr3g0111841 44.444 72 38 1 8 77 2 73 3.62e-13 62.4
Msa0830390 MtrunA17_Chr1g0206691 24.876 201 119 6 11 190 1 190 6.51e-13 65.1
Msa0830390 MtrunA17_Chr1g0187351 44.068 59 33 0 11 69 1 59 1.65e-11 58.2
Msa0830390 MtrunA17_Chr4g0071601 49.275 69 35 0 1 69 11 79 6.18e-11 59.3
Msa0830390 MtrunA17_Chr8g0345001 31.034 145 84 2 3 131 19 163 6.40e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0830390 AT2G22540.3 64.167 240 58 3 1 212 1 240 3.84e-100 290
Msa0830390 AT2G22540.1 64.167 240 58 3 1 212 1 240 3.84e-100 290
Msa0830390 AT2G22540.2 63.333 240 55 4 1 212 1 235 2.39e-96 280
Msa0830390 AT4G24540.1 57.727 220 79 6 1 209 1 217 9.55e-73 220
Msa0830390 AT3G57230.2 46.667 135 71 1 1 135 1 134 3.13e-35 122
Msa0830390 AT3G61120.1 43.750 176 77 5 1 165 1 165 3.32e-35 125
Msa0830390 AT2G42830.1 43.023 172 84 2 1 165 16 180 3.53e-35 125
Msa0830390 AT3G57230.1 44.516 155 85 1 1 155 1 154 4.06e-35 124
Msa0830390 AT3G57230.4 44.516 155 85 1 1 155 1 154 4.06e-35 124
Msa0830390 AT2G42830.2 43.902 164 78 2 1 157 16 172 1.75e-34 123
Msa0830390 AT4G37940.4 44.586 157 86 1 1 157 1 156 1.77e-34 122
Msa0830390 AT4G09960.1 42.945 163 79 2 1 156 1 156 2.02e-34 122
Msa0830390 AT4G09960.5 42.945 163 79 2 1 156 11 166 2.05e-34 122
Msa0830390 AT4G09960.6 42.945 163 79 2 1 156 2 157 2.14e-34 122
Msa0830390 AT3G58780.5 44.785 163 76 3 1 156 22 177 3.96e-34 122
Msa0830390 AT3G58780.1 44.785 163 76 3 1 156 16 171 4.38e-34 122
Msa0830390 AT2G22630.1 46.296 162 74 5 1 156 1 155 6.21e-34 121
Msa0830390 AT2G22630.2 46.296 162 74 5 1 156 1 155 6.21e-34 121
Msa0830390 AT4G09960.3 42.945 163 79 2 1 156 27 182 7.39e-34 122
Msa0830390 AT4G37940.1 42.949 156 88 1 1 156 1 155 1.05e-33 120
Msa0830390 AT4G37940.3 45.926 135 72 1 1 135 1 134 1.39e-33 119
Msa0830390 AT3G30260.1 43.333 150 83 2 1 149 1 149 1.42e-33 120
Msa0830390 AT1G69120.2 43.949 157 87 1 1 156 1 157 3.24e-33 119
Msa0830390 AT4G09960.4 42.683 164 80 2 1 157 96 252 4.81e-33 121
Msa0830390 AT1G69120.1 43.949 157 87 1 1 156 1 157 5.43e-33 119
Msa0830390 AT4G18960.1 41.071 168 93 2 2 166 18 182 2.47e-32 117
Msa0830390 AT5G51870.2 43.827 162 82 3 1 153 1 162 5.47e-32 114
Msa0830390 AT2G45650.1 44.444 162 77 4 1 156 1 155 6.24e-32 116
Msa0830390 AT4G09960.2 44.828 145 66 2 1 138 1 138 7.14e-32 115
Msa0830390 AT5G60910.1 45.625 160 80 4 1 156 1 157 1.26e-31 115
Msa0830390 AT5G51870.1 39.151 212 117 4 1 209 1 203 1.43e-31 114
Msa0830390 AT2G45660.2 42.683 164 80 3 1 157 1 157 1.64e-31 113
Msa0830390 AT5G51870.5 43.827 162 82 3 1 153 24 185 1.77e-31 114
Msa0830390 AT1G26310.1 37.019 208 118 5 1 198 1 205 2.09e-31 115
Msa0830390 AT3G58780.4 43.949 157 74 3 1 150 16 165 3.11e-31 115
Msa0830390 AT5G13790.1 46.853 143 67 2 1 142 1 135 3.27e-31 115
Msa0830390 AT5G62165.3 36.321 212 126 5 1 209 1 206 6.97e-31 112
Msa0830390 AT5G62165.1 36.321 212 126 5 1 209 1 206 6.97e-31 112
Msa0830390 AT5G62165.2 36.321 212 126 5 1 209 1 206 6.97e-31 112
Msa0830390 AT2G14210.1 38.272 243 103 9 1 208 1 231 7.92e-31 113
Msa0830390 AT2G45660.1 39.378 193 98 5 1 181 1 186 9.85e-31 112
Msa0830390 AT2G14210.2 39.732 224 94 8 1 195 1 212 1.41e-30 112
Msa0830390 AT5G62165.17 41.139 158 91 2 1 157 1 157 1.55e-30 110
Msa0830390 AT5G62165.12 41.139 158 91 2 1 157 1 157 1.55e-30 110
Msa0830390 AT5G62165.11 41.139 158 91 2 1 157 1 157 1.55e-30 110
Msa0830390 AT5G62165.10 36.792 212 111 5 1 209 1 192 1.86e-30 111
Msa0830390 AT5G62165.4 36.792 212 111 5 1 209 1 192 1.86e-30 111
Msa0830390 AT5G51870.4 41.818 165 95 1 1 164 1 165 2.16e-30 112
Msa0830390 AT5G51870.3 41.818 165 95 1 1 164 11 175 2.78e-30 112
Msa0830390 AT4G22950.2 42.857 154 87 1 1 154 1 153 3.29e-30 110
Msa0830390 AT4G22950.3 36.744 215 117 4 1 199 1 212 3.65e-30 111
Msa0830390 AT4G22950.1 36.744 215 117 4 1 199 1 212 3.65e-30 111
Msa0830390 AT3G58780.2 42.308 156 83 2 1 156 16 164 5.40e-30 111
Msa0830390 AT5G13790.2 45.205 146 68 2 1 142 1 138 6.09e-30 112
Msa0830390 AT1G24260.3 42.593 162 89 2 1 158 1 162 8.38e-30 110
Msa0830390 AT4G11880.2 42.683 164 82 3 1 158 1 158 1.78e-29 108
Msa0830390 AT4G11880.3 42.683 164 82 3 1 158 1 158 1.78e-29 108
Msa0830390 AT5G62165.6 43.357 143 79 2 1 142 1 142 1.95e-29 107
Msa0830390 AT5G62165.9 43.357 143 79 2 1 142 1 142 1.95e-29 107
Msa0830390 AT5G62165.7 43.357 143 79 2 1 142 1 142 1.95e-29 107
Msa0830390 AT5G62165.8 43.357 143 79 2 1 142 1 142 1.95e-29 107
Msa0830390 AT5G62165.13 43.357 143 79 2 1 142 1 142 1.95e-29 107
Msa0830390 AT5G23260.2 44.304 158 83 3 1 156 1 155 2.96e-29 109
Msa0830390 AT5G23260.4 44.304 158 83 3 1 156 17 171 4.99e-29 109
Msa0830390 AT1G24260.2 42.500 160 88 2 1 156 1 160 1.16e-28 108
Msa0830390 AT3G58780.3 38.830 188 76 4 1 156 16 196 1.59e-28 108
Msa0830390 AT3G57390.1 34.052 232 133 4 1 212 1 232 1.82e-28 107
Msa0830390 AT5G15800.1 44.375 160 82 4 1 156 1 157 2.08e-28 107
Msa0830390 AT5G20240.2 44.755 143 66 4 1 138 1 135 2.67e-28 104
Msa0830390 AT4G11880.4 45.139 144 67 3 1 138 1 138 2.93e-28 106
Msa0830390 AT4G11880.1 45.139 144 67 3 1 138 1 138 2.93e-28 106
Msa0830390 AT5G15800.2 44.375 160 82 4 1 156 1 157 3.53e-28 107
Msa0830390 AT3G57390.3 38.889 162 89 2 1 155 1 159 4.39e-28 106
Msa0830390 AT1G24260.1 41.509 159 90 2 1 156 1 159 4.85e-28 106
Msa0830390 AT3G02310.1 43.750 160 83 4 1 156 1 157 9.05e-28 105
Msa0830390 AT3G02310.2 43.750 160 83 4 1 156 1 157 1.05e-27 104
Msa0830390 AT5G20240.1 41.497 147 77 3 1 144 1 141 1.52e-27 104
Msa0830390 AT2G03710.2 37.975 158 95 2 1 156 1 157 1.82e-27 105
Msa0830390 AT2G03710.1 37.975 158 95 2 1 156 1 157 1.96e-27 105
Msa0830390 AT5G23260.3 42.767 159 86 3 1 157 1 156 2.65e-27 104
Msa0830390 AT2G03710.3 37.975 158 95 2 1 156 1 157 3.45e-27 102
Msa0830390 AT5G23260.1 45.833 144 73 3 1 142 17 157 1.19e-26 103
Msa0830390 AT5G62165.14 48.571 105 52 2 1 103 1 105 9.80e-26 96.7
Msa0830390 AT5G51860.2 41.429 140 79 2 1 138 1 139 2.30e-25 98.6
Msa0830390 AT5G51860.1 41.379 145 72 3 1 138 1 139 3.14e-25 98.2
Msa0830390 AT3G54340.1 38.608 158 90 3 1 156 1 153 1.33e-24 97.1
Msa0830390 AT5G10140.4 34.946 186 107 4 1 184 1 174 4.45e-24 94.4
Msa0830390 AT5G10140.2 37.500 152 83 4 1 150 1 142 1.56e-22 90.1
Msa0830390 AT5G10140.3 37.500 152 83 4 1 150 1 142 1.92e-22 90.5
Msa0830390 AT5G10140.1 37.500 152 83 4 1 150 1 142 2.57e-22 90.1
Msa0830390 AT1G71692.1 62.500 64 24 0 1 64 1 64 1.26e-20 86.3
Msa0830390 AT5G65050.1 35.220 159 94 4 1 158 1 151 2.59e-20 84.7
Msa0830390 AT5G65070.4 46.078 102 47 3 1 94 1 102 3.05e-20 83.6
Msa0830390 AT5G65070.1 46.078 102 47 3 1 94 1 102 9.14e-20 83.6
Msa0830390 AT5G65050.2 35.256 156 92 4 1 155 1 148 1.20e-19 82.8
Msa0830390 AT5G65050.3 35.256 156 92 4 1 155 1 148 1.68e-19 82.8
Msa0830390 AT5G65070.5 54.167 72 32 1 1 71 1 72 3.72e-19 82.4
Msa0830390 AT5G65070.2 54.167 72 32 1 1 71 1 72 3.75e-19 82.8
Msa0830390 AT5G65080.3 36.022 186 105 6 1 183 8 182 4.36e-19 81.6
Msa0830390 AT5G65060.1 33.121 157 96 3 1 156 1 149 7.28e-19 81.3
Msa0830390 AT5G65060.3 35.526 152 84 5 1 149 1 141 9.97e-19 80.9
Msa0830390 AT5G65050.5 35.032 157 80 5 1 155 1 137 1.28e-18 80.1
Msa0830390 AT1G77980.1 34.802 227 99 9 1 179 1 226 1.57e-18 82.8
Msa0830390 AT5G65060.2 47.945 73 37 1 1 72 1 73 2.05e-18 79.7
Msa0830390 AT1G22130.1 65.517 58 20 0 1 58 1 58 2.29e-18 82.4
Msa0830390 AT4G36590.1 47.191 89 47 0 2 90 7 95 2.86e-18 80.9
Msa0830390 AT2G24840.1 30.952 210 109 8 1 189 62 256 3.36e-18 80.9
Msa0830390 AT5G65070.3 57.627 59 25 0 1 59 1 59 3.80e-18 80.1
Msa0830390 AT5G65080.2 57.627 59 25 0 1 59 8 66 8.21e-17 75.9
Msa0830390 AT1G77950.3 31.694 183 84 5 1 142 1 183 2.33e-16 75.5
Msa0830390 AT1G77950.2 31.694 183 84 5 1 142 1 183 2.33e-16 75.5
Msa0830390 AT1G77950.1 31.694 183 84 5 1 142 1 183 2.33e-16 75.5
Msa0830390 AT1G77950.4 31.694 183 84 5 1 142 1 183 2.33e-16 75.5
Msa0830390 AT2G34440.1 45.588 68 37 0 1 68 1 68 8.56e-16 72.4
Msa0830390 AT2G03060.3 58.491 53 22 0 1 53 1 53 1.95e-15 74.3
Msa0830390 AT2G03060.7 58.491 53 22 0 1 53 1 53 1.95e-15 74.3
Msa0830390 AT2G03060.1 58.491 53 22 0 1 53 1 53 1.95e-15 74.3
Msa0830390 AT1G01530.1 46.269 67 36 0 1 67 6 72 2.26e-15 72.8
Msa0830390 AT2G03060.2 58.491 53 22 0 1 53 1 53 2.34e-15 74.3
Msa0830390 AT1G69540.2 31.285 179 77 6 1 143 1 169 8.92e-15 72.4
Msa0830390 AT1G69540.1 31.285 179 77 6 1 143 1 169 9.40e-15 72.0
Msa0830390 AT4G37435.1 40.404 99 55 2 1 95 1 99 1.39e-14 69.7
Msa0830390 AT5G60440.1 46.269 67 36 0 2 68 7 73 1.99e-14 70.9
Msa0830390 AT1G77080.12 38.608 158 84 4 1 157 1 146 2.01e-14 68.2
Msa0830390 AT1G72350.1 53.333 60 28 0 2 61 43 102 2.41e-14 69.7
Msa0830390 AT1G18750.4 52.830 53 25 0 1 53 1 53 2.49e-14 71.2
Msa0830390 AT1G18750.1 52.830 53 25 0 1 53 1 53 2.51e-14 71.2
Msa0830390 AT1G18750.3 52.830 53 25 0 1 53 1 53 2.81e-14 71.2
Msa0830390 AT3G66656.1 44.118 68 38 0 1 68 1 68 3.26e-14 68.6
Msa0830390 AT1G65360.1 44.118 68 38 0 1 68 6 73 3.33e-14 69.3
Msa0830390 AT1G77080.4 36.076 158 90 4 1 156 1 149 5.15e-14 68.2
Msa0830390 AT1G77080.11 36.076 158 90 4 1 156 1 149 8.28e-14 67.4
Msa0830390 AT1G31140.2 53.226 62 29 0 1 62 1 62 8.48e-14 68.2
Msa0830390 AT1G31140.1 53.226 62 29 0 1 62 1 62 8.75e-14 67.8
Msa0830390 AT1G77080.5 47.561 82 41 2 1 80 1 82 1.09e-13 67.0
Msa0830390 AT2G26320.1 45.333 75 39 1 1 73 17 91 1.18e-13 65.1
Msa0830390 AT1G77080.2 38.217 157 84 4 1 156 1 145 1.29e-13 67.0
Msa0830390 AT1G77080.8 47.561 82 41 2 1 80 1 82 2.19e-13 67.0
Msa0830390 AT3G04100.1 40.299 67 40 0 2 68 14 80 3.49e-13 66.2
Msa0830390 AT1G47760.1 41.176 68 40 0 1 68 1 68 1.46e-12 63.9
Msa0830390 AT1G28460.1 44.776 67 37 0 2 68 8 74 7.50e-12 62.0
Msa0830390 AT3G05860.2 30.000 150 79 5 1 146 1 128 2.15e-11 61.2
Msa0830390 AT3G05860.1 29.801 151 78 6 1 146 1 128 2.61e-11 61.6
Msa0830390 AT3G05860.3 29.801 151 78 6 1 146 1 128 2.93e-11 61.6
Msa0830390 AT1G29962.1 43.939 66 37 0 3 68 9 74 3.42e-11 60.5

Find 92 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTATTGTTCCTCAAAA+AGG 0.189187 5_4:-3461524 Msa0830390:five_prime_UTR
TCAATGAATGAATATGATTT+TGG 0.193776 5_4:+3461743 None:intergenic
TTGGAGAGGTCACTTGAAAT+TGG 0.219701 5_4:-3459366 Msa0830390:CDS
GATGTGTAGTTAACTATTTA+TGG 0.226009 5_4:+3461255 None:intergenic
ATCCAAAAGAAGATAAATTA+AGG 0.249601 5_4:-3461074 Msa0830390:intron
GAATATTTCTAACCTTTCTT+TGG 0.260465 5_4:+3459197 None:intergenic
CCCTCATCTGCCTTAATTGA+TGG 0.266278 5_4:+3459430 None:intergenic
AAAGAGAGTCAGAAAGAAAA+AGG 0.293042 5_4:+3461615 None:intergenic
ATTGCTTTGCCTTACCATAA+AGG 0.320424 5_4:-3461673 Msa0830390:five_prime_UTR
ACATTCCTTCAGCCGGCATA+TGG 0.334671 5_4:+3457851 None:intergenic
GGGATTAAACTGGGTGTGTT+TGG 0.336377 5_4:-3457818 Msa0830390:three_prime_UTR
TTGCTTTGCCTTACCATAAA+GGG 0.340354 5_4:-3461672 Msa0830390:five_prime_UTR
TATCTGAACTCTCATAATCT+TGG 0.352501 5_4:+3458058 None:intergenic
CTAAGAAGAGCCATCAATTA+AGG 0.355623 5_4:-3459440 Msa0830390:CDS
CACCAGTTTCTTCTCTATAG+AGG 0.366305 5_4:-3461407 Msa0830390:five_prime_UTR
TGTGGAAGAATTACAACAAT+TGG 0.373590 5_4:-3459385 Msa0830390:CDS
ACTGGGTGTGTTTGGATTGA+GGG 0.378593 5_4:-3457810 Msa0830390:three_prime_UTR
CTCAAAGAACCTCGCAAAGC+TGG 0.379678 5_4:-3459702 Msa0830390:CDS
ATCTGAACTCTCATAATCTT+GGG 0.383551 5_4:+3458059 None:intergenic
AGAAGAAACTGGTGAACAAA+TGG 0.387332 5_4:+3461416 None:intergenic
AAGAAGAGGATTAATCAAAA+AGG 0.392982 5_4:-3460970 Msa0830390:CDS
TCTTTGAATACTCCAACTTA+AGG 0.399297 5_4:-3460881 Msa0830390:intron
AGAACCGTCTCTTGAGTTGC+AGG 0.416179 5_4:-3459678 Msa0830390:intron
TGGAGAGGTCACTTGAAATT+GGG 0.419481 5_4:-3459365 Msa0830390:CDS
TGTGTTTGGATTGAGGGTTT+AGG 0.420522 5_4:-3457804 Msa0830390:three_prime_UTR
GACAAAAGAAAGAGAAGTGA+AGG 0.420606 5_4:+3461229 None:intergenic
TCAGATACATCGCTCAAGTT+GGG 0.436087 5_4:-3458042 Msa0830390:CDS
ATGATGGATCATAAGGTTGC+GGG 0.443250 5_4:-3458186 Msa0830390:intron
ACTCATACCCTAGTGACCTT+TGG 0.446181 5_4:-3461712 Msa0830390:five_prime_UTR
AAATTAAGGTAAAGAAGAAA+TGG 0.447909 5_4:-3461060 Msa0830390:exon
GATGCAGTCATGCAGGCATT+TGG 0.450177 5_4:+3461310 None:intergenic
GTCTCTGAAAGATAATGAAA+TGG 0.452122 5_4:+3461361 None:intergenic
AACTGGGTGTGTTTGGATTG+AGG 0.460175 5_4:-3457811 Msa0830390:three_prime_UTR
CTCGTCTTCCAAAGGTCACT+AGG 0.464850 5_4:+3461704 None:intergenic
GAGAAAGAAAGACCTTAAGT+TGG 0.470112 5_4:+3460869 None:intergenic
AGGTCACTTGAAATTGGGTT+GGG 0.472406 5_4:-3459360 Msa0830390:CDS
TTCAGATACATCGCTCAAGT+TGG 0.479254 5_4:-3458043 Msa0830390:CDS
CATTCCTTCAGCCGGCATAT+GGG 0.480333 5_4:+3457852 None:intergenic
TTGTGTGCGAGGGATTAAAC+TGG 0.485950 5_4:-3457828 Msa0830390:three_prime_UTR
GAGGTCACTTGAAATTGGGT+TGG 0.488246 5_4:-3459361 Msa0830390:CDS
GATCAATGATCTCCAAAGAA+AGG 0.499633 5_4:-3459209 Msa0830390:intron
ATCCTCTATAGAGAAGAAAC+TGG 0.502434 5_4:+3461405 None:intergenic
AGATCTTGAAGGTTTGAATG+TGG 0.507969 5_4:-3459403 Msa0830390:CDS
AAGTAAACCCCTTTATGGTA+AGG 0.510438 5_4:+3461664 None:intergenic
CTCTATAGAGGATCTAAAAG+AGG 0.520099 5_4:-3461395 Msa0830390:five_prime_UTR
TGGATGAATTATGGGTTAGG+AGG 0.527557 5_4:+3461459 None:intergenic
ATAATCTTGGGGAGGACCAA+TGG 0.530085 5_4:+3458071 None:intergenic
ATGAGGGGAGAAGATCTTGA+AGG 0.541103 5_4:-3459414 Msa0830390:CDS
GAAGAAACTGGTGAACAAAT+GGG 0.545104 5_4:+3461417 None:intergenic
CCATCAATTAAGGCAGATGA+GGG 0.555256 5_4:-3459430 Msa0830390:CDS
TGATGTTTATTTGGTTAGTG+AGG 0.555731 5_4:+3461560 None:intergenic
CACACAAACATTCCTTCAGC+CGG 0.558090 5_4:+3457844 None:intergenic
TATGAGAATGTGGTTAATGA+AGG 0.563013 5_4:-3458129 Msa0830390:CDS
ATGAAATGATGCAGTCATGC+AGG 0.563073 5_4:+3461303 None:intergenic
TTTGGATTGAGGGTTTAGGA+AGG 0.563543 5_4:-3457800 Msa0830390:three_prime_UTR
TCAGGGAGAGAAGATCATGA+TGG 0.564270 5_4:-3459233 Msa0830390:intron
ATTTGCAGGCTCCCATATGC+CGG 0.566203 5_4:-3457863 Msa0830390:intron
GGCTCCCATATGCCGGCTGA+AGG 0.566587 5_4:-3457856 Msa0830390:exon
TTGGATTGAGGGTTTAGGAA+GGG 0.570252 5_4:-3457799 Msa0830390:three_prime_UTR
GATTGAGGGTTTAGGAAGGG+AGG 0.571429 5_4:-3457796 Msa0830390:three_prime_UTR
ATGATTAACGACAGAATGGT+TGG 0.571480 5_4:-3458162 Msa0830390:CDS
GCCATCAATTAAGGCAGATG+AGG 0.573391 5_4:-3459431 Msa0830390:CDS
GTAGTGTGAAATGTACTTTG+TGG 0.574489 5_4:+3461491 None:intergenic
ACCAACGTTTACAACTCCAT+TGG 0.576740 5_4:-3458087 Msa0830390:CDS
GGGCATGATTAACGACAGAA+TGG 0.581587 5_4:-3458166 Msa0830390:CDS
ATAGAGGATCTAAAAGAGGA+AGG 0.586408 5_4:-3461391 Msa0830390:five_prime_UTR
TTGAGGAACAATAATGAACA+TGG 0.587700 5_4:+3461529 None:intergenic
AACGTTGGTGACAGATTCTG+AGG 0.592708 5_4:+3458101 None:intergenic
TGCTTTGCCTTACCATAAAG+GGG 0.597645 5_4:-3461671 Msa0830390:five_prime_UTR
GTGGCTCGCTCGTCTTCCAA+AGG 0.597700 5_4:+3461696 None:intergenic
TGAAGGAATGTTTGTGTGCG+AGG 0.598854 5_4:-3457839 Msa0830390:three_prime_UTR
CAGATACATCGCTCAAGTTG+GGG 0.603531 5_4:-3458041 Msa0830390:intron
ACGGTTCTTCCAGCTTTGCG+AGG 0.603660 5_4:+3459693 None:intergenic
TCGTCTTCCAAAGGTCACTA+GGG 0.607418 5_4:+3461705 None:intergenic
GCGTGAGGGAAATACTTGAA+AGG 0.613182 5_4:-3459736 Msa0830390:CDS
TGTGTTATGATGAAGCGTGA+GGG 0.617556 5_4:-3459750 Msa0830390:intron
TCTGAACTCTCATAATCTTG+GGG 0.621502 5_4:+3458060 None:intergenic
GGGCCGTGTAATAGAAAACA+AGG 0.627922 5_4:-3459340 Msa0830390:intron
AAGAATTACAACAATTGGAG+AGG 0.631162 5_4:-3459380 Msa0830390:CDS
GAAGGAATGTTTGTGTGCGA+GGG 0.633057 5_4:-3457838 Msa0830390:three_prime_UTR
ATTAACGACAGAATGGTTGG+AGG 0.640229 5_4:-3458159 Msa0830390:CDS
CAACTGTTCTAGATTGAGCA+AGG 0.640451 5_4:-3459469 Msa0830390:CDS
CCAACCTGCAACTCAAGAGA+CGG 0.649927 5_4:+3459674 None:intergenic
ACCAATGGAGTTGTAAACGT+TGG 0.652128 5_4:+3458086 None:intergenic
AGGTGATGAATATGAGAATG+TGG 0.655081 5_4:-3458139 Msa0830390:CDS
GAACTCTCATAATCTTGGGG+AGG 0.658116 5_4:+3458063 None:intergenic
AGATTGAAAACGCAACGGCG+AGG 0.667280 5_4:-3461013 Msa0830390:CDS
TGTGTGCGAGGGATTAAACT+GGG 0.674374 5_4:-3457827 Msa0830390:three_prime_UTR
AAAGAAGATTGAAAACGCAA+CGG 0.680027 5_4:-3461018 Msa0830390:CDS
GAAACTGGTGAACAAATGGG+TGG 0.701064 5_4:+3461420 None:intergenic
TATGGTAAGGCAAAGCAATG+TGG 0.708560 5_4:+3461677 None:intergenic
CATCAATTAAGGCAGATGAG+GGG 0.712596 5_4:-3459429 Msa0830390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACAAAAGTTTAAAAAT+AGG - chr5_4:3460477-3460496 Msa0830390:intron 10.0%
!! ATGTATTTGTAAAAAAAAAA+TGG - chr5_4:3460509-3460528 Msa0830390:intron 10.0%
!!! TTTATTTTTGGATGAATTAT+GGG + chr5_4:3457935-3457954 None:intergenic 15.0%
!!! ATTTATTTTTGGATGAATTA+TGG + chr5_4:3457936-3457955 None:intergenic 15.0%
!! ATATATGTAGCAAAAAATAA+AGG - chr5_4:3458254-3458273 Msa0830390:intron 15.0%
!!! AAGGAAAAAAAAATAGATTT+TGG - chr5_4:3459372-3459391 Msa0830390:CDS 15.0%
!!! ATCATTCATTGTTATTTATT+TGG - chr5_4:3459590-3459609 Msa0830390:intron 15.0%
!!! AATGTTTTATTTGTTCATTT+TGG + chr5_4:3459799-3459818 None:intergenic 15.0%
!!! TATAAAAAAAAAGTACTAGT+AGG + chr5_4:3460081-3460100 None:intergenic 15.0%
!!! AAAATATTGTTTTGTTTTTC+AGG - chr5_4:3460132-3460151 Msa0830390:intron 15.0%
!!! AAATATTGTTTTGTTTTTCA+GGG - chr5_4:3460133-3460152 Msa0830390:intron 15.0%
!! GACTAAAATTTAATTAGATA+GGG - chr5_4:3460240-3460259 Msa0830390:intron 15.0%
!!! TTTTTTTTTAACAATCAAAG+TGG + chr5_4:3460357-3460376 None:intergenic 15.0%
!!! TACTTTTACTAAAAATTGTA+AGG - chr5_4:3460386-3460405 Msa0830390:intron 15.0%
!!! ACTTTTACTAAAAATTGTAA+GGG - chr5_4:3460387-3460406 Msa0830390:intron 15.0%
!! AAAAATATCATGCAAATATT+GGG + chr5_4:3461129-3461148 None:intergenic 15.0%
!! TAAAAATATCATGCAAATAT+TGG + chr5_4:3461130-3461149 None:intergenic 15.0%
!! AAAAAATTACTTGTATATGA+TGG - chr5_4:3461181-3461200 Msa0830390:intron 15.0%
!!! GTGGTTTCTATATTTATTTT+TGG + chr5_4:3457947-3457966 None:intergenic 20.0%
!! ATCCAAAAGAAGATAAATTA+AGG - chr5_4:3458309-3458328 Msa0830390:intron 20.0%
!!! TACCTTAATTTATCTTCTTT+TGG + chr5_4:3458314-3458333 None:intergenic 20.0%
!! AAATTAAGGTAAAGAAGAAA+TGG - chr5_4:3458323-3458342 Msa0830390:intron 20.0%
!! ACTCTAATGAATTAAAACAA+TGG - chr5_4:3458562-3458581 Msa0830390:intron 20.0%
!!! GTAGATCTTTTTTCAAAAAA+TGG - chr5_4:3458654-3458673 Msa0830390:intron 20.0%
!! TTTATCCTAATAAGTGAAAT+CGG - chr5_4:3458957-3458976 Msa0830390:intron 20.0%
!! GTAAGAGTTAGATTAAAATA+TGG + chr5_4:3459022-3459041 None:intergenic 20.0%
!! TTTATATAGCTAATGTTACA+CGG - chr5_4:3459242-3459261 Msa0830390:intron 20.0%
!! TAAATTAATTGTTGTCATGT+TGG - chr5_4:3459273-3459292 Msa0830390:intron 20.0%
!! AAATTAATTGTTGTCATGTT+GGG - chr5_4:3459274-3459293 Msa0830390:intron 20.0%
!!! AGGAATATCTTTTTATTTTG+AGG - chr5_4:3459405-3459424 Msa0830390:CDS 20.0%
!!! TGATCTTTTTTTTAACAAGA+TGG - chr5_4:3459435-3459454 Msa0830390:CDS 20.0%
!!! GATCTTTTTTTTAACAAGAT+GGG - chr5_4:3459436-3459455 Msa0830390:CDS 20.0%
!! TTATTTGGTATAATTTGACT+TGG - chr5_4:3459605-3459624 Msa0830390:intron 20.0%
!! ACTCAACATGTTATATTAAT+TGG - chr5_4:3460215-3460234 Msa0830390:intron 20.0%
!! CGACTAAAATTTAATTAGAT+AGG - chr5_4:3460239-3460258 Msa0830390:intron 20.0%
!! ACACAATTTAATGTATGAAT+TGG + chr5_4:3460450-3460469 None:intergenic 20.0%
!!! AATTATGCTTAGTTTTGTAT+TGG - chr5_4:3460827-3460846 Msa0830390:intron 20.0%
!!! AGTAAAAATTGGTTGTTTTA+GGG + chr5_4:3460953-3460972 None:intergenic 20.0%
!!! AATGTAGAATTTCTTTTTGA+AGG - chr5_4:3461422-3461441 Msa0830390:five_prime_UTR 20.0%
!!! GATTTTTGGTGATGTTTATT+TGG + chr5_4:3457835-3457854 None:intergenic 25.0%
!! CAATAATGAACATGGATTTT+TGG + chr5_4:3457849-3457868 None:intergenic 25.0%
! TTCATTATTGTTCCTCAAAA+AGG - chr5_4:3457859-3457878 Msa0830390:intron 25.0%
! GATGTGTAGTTAACTATTTA+TGG + chr5_4:3458131-3458150 None:intergenic 25.0%
!! TCTTTTGTCTCTTCTTTTTT+AGG - chr5_4:3458168-3458187 Msa0830390:CDS 25.0%
! AAGAAGAGGATTAATCAAAA+AGG - chr5_4:3458413-3458432 Msa0830390:intron 25.0%
! TTAAAAGTGAAAACAAACAC+AGG - chr5_4:3458714-3458733 Msa0830390:intron 25.0%
! TATTTCAGCCAACATTAATT+AGG - chr5_4:3458843-3458862 Msa0830390:intron 25.0%
! CCAATTATCCTAATTAATGT+TGG + chr5_4:3458854-3458873 None:intergenic 25.0%
! CCAACATTAATTAGGATAAT+TGG - chr5_4:3458851-3458870 Msa0830390:intron 25.0%
! TCACTTATTAGGATAAAGTT+TGG + chr5_4:3458954-3458973 None:intergenic 25.0%
!! TATAACCGATTTCACTTATT+AGG + chr5_4:3458965-3458984 None:intergenic 25.0%
!! GTTTTGTGTGAATTTAAATC+TGG - chr5_4:3459082-3459101 Msa0830390:intron 25.0%
! AATTAATTGTTGTCATGTTG+GGG - chr5_4:3459275-3459294 Msa0830390:intron 25.0%
!!! TAGATTTTGGAAAAGCTATT+AGG - chr5_4:3459385-3459404 Msa0830390:CDS 25.0%
! TCAAAAAAGTTCCAATCAAA+CGG - chr5_4:3459539-3459558 Msa0830390:intron 25.0%
!! GAATATTTCTAACCTTTCTT+TGG + chr5_4:3460189-3460208 None:intergenic 25.0%
!!! AGATTTGTGAACAACTTTTT+TGG + chr5_4:3460611-3460630 None:intergenic 25.0%
! TTCACAAATCTTAATTCAAC+TGG - chr5_4:3460620-3460639 Msa0830390:intron 25.0%
!! GACGTCAATATTAACAATTT+TGG + chr5_4:3460651-3460670 None:intergenic 25.0%
! GAAGCTAATTTAGATATATG+TGG + chr5_4:3460907-3460926 None:intergenic 25.0%
!!! CAGTAAAAATTGGTTGTTTT+AGG + chr5_4:3460954-3460973 None:intergenic 25.0%
! TAAGTGAACTAATAATGATG+TGG + chr5_4:3461385-3461404 None:intergenic 25.0%
GAAAAAAGTAAACCCCTTTA+TGG + chr5_4:3457727-3457746 None:intergenic 30.0%
AAAGAGAGTCAGAAAGAAAA+AGG + chr5_4:3457771-3457790 None:intergenic 30.0%
TGATGTTTATTTGGTTAGTG+AGG + chr5_4:3457826-3457845 None:intergenic 30.0%
TTGAGGAACAATAATGAACA+TGG + chr5_4:3457857-3457876 None:intergenic 30.0%
! GGATTTTACTTTCCTTTTTG+AGG + chr5_4:3457874-3457893 None:intergenic 30.0%
! TTTTGGATGAATTATGGGTT+AGG + chr5_4:3457930-3457949 None:intergenic 30.0%
! GTCTCTGAAAGATAATGAAA+TGG + chr5_4:3458025-3458044 None:intergenic 30.0%
AAAGAAGATTGAAAACGCAA+CGG - chr5_4:3458365-3458384 Msa0830390:intron 30.0%
!!! ACTTTTTCAAAGAGAAGAAG+AGG - chr5_4:3458399-3458418 Msa0830390:intron 30.0%
! TCATCATTTTCTCTTCTACT+GGG - chr5_4:3458475-3458494 Msa0830390:intron 30.0%
TCTTTGAATACTCCAACTTA+AGG - chr5_4:3458502-3458521 Msa0830390:intron 30.0%
TTCTCTCATGAATGAAAACA+CGG - chr5_4:3458532-3458551 Msa0830390:intron 30.0%
TCTAAACAAATGCACAACAT+AGG + chr5_4:3458800-3458819 None:intergenic 30.0%
! TTCACACAAAACACATTTTG+AGG + chr5_4:3459074-3459093 None:intergenic 30.0%
ACATATAAACCTAAACCACT+TGG - chr5_4:3459178-3459197 Msa0830390:intron 30.0%
! CTTCTAAAAACAAAGAACAC+AGG + chr5_4:3459355-3459374 None:intergenic 30.0%
!!! CTGTGTTCTTTGTTTTTAGA+AGG - chr5_4:3459353-3459372 Msa0830390:CDS 30.0%
CAAAAAAGTTCCAATCAAAC+GGG - chr5_4:3459540-3459559 Msa0830390:intron 30.0%
TGTGGAAGAATTACAACAAT+TGG - chr5_4:3459998-3460017 Msa0830390:intron 30.0%
AAGAATTACAACAATTGGAG+AGG - chr5_4:3460003-3460022 Msa0830390:intron 30.0%
!!! AGACCTTGTTTTCTATTACA+CGG + chr5_4:3460049-3460068 None:intergenic 30.0%
ATTTAATTAGATAGGGTCGA+TGG - chr5_4:3460247-3460266 Msa0830390:intron 30.0%
TCTAAAAAATGTTCCAAGGA+TGG + chr5_4:3460414-3460433 None:intergenic 30.0%
!!! ATCCTTGGAACATTTTTTAG+AGG - chr5_4:3460413-3460432 Msa0830390:intron 30.0%
!!! TTTGTGAACAACTTTTTTGG+TGG + chr5_4:3460608-3460627 None:intergenic 30.0%
!!! CTGTTGTTTTAGAAGATAGA+TGG + chr5_4:3460741-3460760 None:intergenic 30.0%
!!! TGTTTTAGGGATGAAAGTAA+GGG + chr5_4:3460940-3460959 None:intergenic 30.0%
!!! TTGTTTTAGGGATGAAAGTA+AGG + chr5_4:3460941-3460960 None:intergenic 30.0%
!! ATCATACATGTTGCTTTAGT+CGG + chr5_4:3461012-3461031 None:intergenic 30.0%
!! CTTGTATATGATGGATCATA+AGG - chr5_4:3461190-3461209 Msa0830390:intron 30.0%
TATGAGAATGTGGTTAATGA+AGG - chr5_4:3461254-3461273 Msa0830390:five_prime_UTR 30.0%
ATCTGAACTCTCATAATCTT+GGG + chr5_4:3461327-3461346 None:intergenic 30.0%
TATCTGAACTCTCATAATCT+TGG + chr5_4:3461328-3461347 None:intergenic 30.0%
ATTGCTTTGCCTTACCATAA+AGG - chr5_4:3457710-3457729 Msa0830390:three_prime_UTR 35.0%
TTGCTTTGCCTTACCATAAA+GGG - chr5_4:3457711-3457730 Msa0830390:three_prime_UTR 35.0%
AAGTAAACCCCTTTATGGTA+AGG + chr5_4:3457722-3457741 None:intergenic 35.0%
AAGAAAAAGGTTGTGTGTGT+GGG + chr5_4:3457758-3457777 None:intergenic 35.0%
AAAGAAAAAGGTTGTGTGTG+TGG + chr5_4:3457759-3457778 None:intergenic 35.0%
! CTTTCTGACTCTCTTTTCAT+TGG - chr5_4:3457775-3457794 Msa0830390:three_prime_UTR 35.0%
GTAGTGTGAAATGTACTTTG+TGG + chr5_4:3457895-3457914 None:intergenic 35.0%
GAAGAAACTGGTGAACAAAT+GGG + chr5_4:3457969-3457988 None:intergenic 35.0%
AGAAGAAACTGGTGAACAAA+TGG + chr5_4:3457970-3457989 None:intergenic 35.0%
ATCCTCTATAGAGAAGAAAC+TGG + chr5_4:3457981-3458000 None:intergenic 35.0%
CTCTATAGAGGATCTAAAAG+AGG - chr5_4:3457988-3458007 Msa0830390:intron 35.0%
ATAGAGGATCTAAAAGAGGA+AGG - chr5_4:3457992-3458011 Msa0830390:intron 35.0%
GACAAAAGAAAGAGAAGTGA+AGG + chr5_4:3458157-3458176 None:intergenic 35.0%
! CTCATCATTTTCTCTTCTAC+TGG - chr5_4:3458474-3458493 Msa0830390:intron 35.0%
GAGAAAGAAAGACCTTAAGT+TGG + chr5_4:3458517-3458536 None:intergenic 35.0%
CTAAATCACTGATCAGAGTT+GGG + chr5_4:3458879-3458898 None:intergenic 35.0%
ACTAAATCACTGATCAGAGT+TGG + chr5_4:3458880-3458899 None:intergenic 35.0%
! CAATTGCACTGAAGAGTTTT+AGG + chr5_4:3458912-3458931 None:intergenic 35.0%
!! CACAAAACACATTTTGAGGA+GGG + chr5_4:3459070-3459089 None:intergenic 35.0%
!! ACACAAAACACATTTTGAGG+AGG + chr5_4:3459071-3459090 None:intergenic 35.0%
CATGATCGATGTCAACTTAA+GGG + chr5_4:3459566-3459585 None:intergenic 35.0%
CTAAGAAGAGCCATCAATTA+AGG - chr5_4:3459943-3459962 Msa0830390:intron 35.0%
AGATCTTGAAGGTTTGAATG+TGG - chr5_4:3459980-3459999 Msa0830390:intron 35.0%
GATCAATGATCTCCAAAGAA+AGG - chr5_4:3460174-3460193 Msa0830390:intron 35.0%
! GACCTCTAAAAAATGTTCCA+AGG + chr5_4:3460418-3460437 None:intergenic 35.0%
!! GTGTGTTTGAGTTTTCTAGT+CGG - chr5_4:3460564-3460583 Msa0830390:intron 35.0%
AAAATTCACACACACAAGTG+GGG + chr5_4:3460700-3460719 None:intergenic 35.0%
GAAAATTCACACACACAAGT+GGG + chr5_4:3460701-3460720 None:intergenic 35.0%
TGAAAATTCACACACACAAG+TGG + chr5_4:3460702-3460721 None:intergenic 35.0%
!! TATGATGGATCATAAGGTTG+CGG - chr5_4:3461196-3461215 Msa0830390:intron 35.0%
ATGATTAACGACAGAATGGT+TGG - chr5_4:3461221-3461240 Msa0830390:five_prime_UTR 35.0%
AGGTGATGAATATGAGAATG+TGG - chr5_4:3461244-3461263 Msa0830390:five_prime_UTR 35.0%
TCTGAACTCTCATAATCTTG+GGG + chr5_4:3461326-3461345 None:intergenic 35.0%
TATGGTAAGGCAAAGCAATG+TGG + chr5_4:3457709-3457728 None:intergenic 40.0%
TGCTTTGCCTTACCATAAAG+GGG - chr5_4:3457712-3457731 Msa0830390:three_prime_UTR 40.0%
AGAAAAAGGTTGTGTGTGTG+GGG + chr5_4:3457757-3457776 None:intergenic 40.0%
! TCTGACTCTCTTTTCATTGG+TGG - chr5_4:3457778-3457797 Msa0830390:three_prime_UTR 40.0%
!! TGGATGAATTATGGGTTAGG+AGG + chr5_4:3457927-3457946 None:intergenic 40.0%
CACCAGTTTCTTCTCTATAG+AGG - chr5_4:3457976-3457995 Msa0830390:intron 40.0%
ATGAAATGATGCAGTCATGC+AGG + chr5_4:3458083-3458102 None:intergenic 40.0%
TCTCTCTTTCAACTATACGC+TGG - chr5_4:3458202-3458221 Msa0830390:intron 40.0%
!! AAACACATTTTGAGGAGGGA+CGG + chr5_4:3459066-3459085 None:intergenic 40.0%
AGAGTGGTTGAATTGGACAA+GGG + chr5_4:3459140-3459159 None:intergenic 40.0%
TCCAATTCAACCACTCTCAT+AGG - chr5_4:3459143-3459162 Msa0830390:intron 40.0%
TCCTATGAGAGTGGTTGAAT+TGG + chr5_4:3459147-3459166 None:intergenic 40.0%
TCTGTACTATCCTATGAGAG+TGG + chr5_4:3459156-3459175 None:intergenic 40.0%
TTATGTGCACCAAGTGGTTT+AGG + chr5_4:3459190-3459209 None:intergenic 40.0%
GCATTATTATGTGCACCAAG+TGG + chr5_4:3459196-3459215 None:intergenic 40.0%
ATCCATGTGAACATTGCACA+GGG + chr5_4:3459218-3459237 None:intergenic 40.0%
TATCCATGTGAACATTGCAC+AGG + chr5_4:3459219-3459238 None:intergenic 40.0%
GCATGATCGATGTCAACTTA+AGG + chr5_4:3459567-3459586 None:intergenic 40.0%
TTGTGTTATGATGAAGCGTG+AGG - chr5_4:3459632-3459651 Msa0830390:intron 40.0%
TGTGTTATGATGAAGCGTGA+GGG - chr5_4:3459633-3459652 Msa0830390:intron 40.0%
! CAACTGTTCTAGATTGAGCA+AGG - chr5_4:3459914-3459933 Msa0830390:intron 40.0%
CCATCAATTAAGGCAGATGA+GGG - chr5_4:3459953-3459972 Msa0830390:intron 40.0%
CATCAATTAAGGCAGATGAG+GGG - chr5_4:3459954-3459973 Msa0830390:intron 40.0%
TTGGAGAGGTCACTTGAAAT+TGG - chr5_4:3460017-3460036 Msa0830390:intron 40.0%
TGGAGAGGTCACTTGAAATT+GGG - chr5_4:3460018-3460037 Msa0830390:intron 40.0%
AGGTCACTTGAAATTGGGTT+GGG - chr5_4:3460023-3460042 Msa0830390:intron 40.0%
TAATTAGATAGGGTCGATGG+AGG - chr5_4:3460250-3460269 Msa0830390:intron 40.0%
AAATTGTAAGGGTCCATCCT+TGG - chr5_4:3460398-3460417 Msa0830390:intron 40.0%
! CAATTTTTACTGAGCCTGCA+GGG - chr5_4:3460962-3460981 Msa0830390:CDS 40.0%
!! ATGATGGATCATAAGGTTGC+GGG - chr5_4:3461197-3461216 Msa0830390:intron 40.0%
ATTAACGACAGAATGGTTGG+AGG - chr5_4:3461224-3461243 Msa0830390:five_prime_UTR 40.0%
ACCAACGTTTACAACTCCAT+TGG - chr5_4:3461296-3461315 Msa0830390:five_prime_UTR 40.0%
ACCAATGGAGTTGTAAACGT+TGG + chr5_4:3461300-3461319 None:intergenic 40.0%
TTCAGATACATCGCTCAAGT+TGG - chr5_4:3461340-3461359 Msa0830390:five_prime_UTR 40.0%
TCAGATACATCGCTCAAGTT+GGG - chr5_4:3461341-3461360 Msa0830390:five_prime_UTR 40.0%
CGCTTTCATGTACTATTTGC+AGG - chr5_4:3461506-3461525 Msa0830390:five_prime_UTR 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr5_4:3461579-3461598 Msa0830390:five_prime_UTR 40.0%
TTTGGATTGAGGGTTTAGGA+AGG - chr5_4:3461583-3461602 Msa0830390:five_prime_UTR 40.0%
TTGGATTGAGGGTTTAGGAA+GGG - chr5_4:3461584-3461603 Msa0830390:five_prime_UTR 40.0%
ACTCATACCCTAGTGACCTT+TGG - chr5_4:3457671-3457690 Msa0830390:three_prime_UTR 45.0%
TCGTCTTCCAAAGGTCACTA+GGG + chr5_4:3457681-3457700 None:intergenic 45.0%
GAAACTGGTGAACAAATGGG+TGG + chr5_4:3457966-3457985 None:intergenic 45.0%
!!! GCACTGAAGAGTTTTAGGTG+TGG + chr5_4:3458907-3458926 None:intergenic 45.0%
GAGAGTGGTTGAATTGGACA+AGG + chr5_4:3459141-3459160 None:intergenic 45.0%
AACTTAAGGGCCCGTTTGAT+TGG + chr5_4:3459553-3459572 None:intergenic 45.0%
GCGTGAGGGAAATACTTGAA+AGG - chr5_4:3459647-3459666 Msa0830390:intron 45.0%
GCCATCAATTAAGGCAGATG+AGG - chr5_4:3459952-3459971 Msa0830390:intron 45.0%
CCCTCATCTGCCTTAATTGA+TGG + chr5_4:3459956-3459975 None:intergenic 45.0%
ATGAGGGGAGAAGATCTTGA+AGG - chr5_4:3459969-3459988 Msa0830390:intron 45.0%
GAGGTCACTTGAAATTGGGT+TGG - chr5_4:3460022-3460041 Msa0830390:intron 45.0%
GGGCCGTGTAATAGAAAACA+AGG - chr5_4:3460043-3460062 Msa0830390:intron 45.0%
TCAGGGAGAGAAGATCATGA+TGG - chr5_4:3460150-3460169 Msa0830390:intron 45.0%
GGGATGAAAGTAAGGGTTGT+AGG + chr5_4:3460933-3460952 None:intergenic 45.0%
CCTGCAGGCTCAGTAAAAAT+TGG + chr5_4:3460964-3460983 None:intergenic 45.0%
! CCAATTTTTACTGAGCCTGC+AGG - chr5_4:3460961-3460980 Msa0830390:CDS 45.0%
GGGCATGATTAACGACAGAA+TGG - chr5_4:3461217-3461236 Msa0830390:five_prime_UTR 45.0%
!! AACGTTGGTGACAGATTCTG+AGG + chr5_4:3461285-3461304 None:intergenic 45.0%
ATAATCTTGGGGAGGACCAA+TGG + chr5_4:3461315-3461334 None:intergenic 45.0%
GAACTCTCATAATCTTGGGG+AGG + chr5_4:3461323-3461342 None:intergenic 45.0%
! CAGATACATCGCTCAAGTTG+GGG - chr5_4:3461342-3461361 Msa0830390:five_prime_UTR 45.0%
CACACAAACATTCCTTCAGC+CGG + chr5_4:3461542-3461561 None:intergenic 45.0%
TGAAGGAATGTTTGTGTGCG+AGG - chr5_4:3461544-3461563 Msa0830390:five_prime_UTR 45.0%
GAAGGAATGTTTGTGTGCGA+GGG - chr5_4:3461545-3461564 Msa0830390:five_prime_UTR 45.0%
TTGTGTGCGAGGGATTAAAC+TGG - chr5_4:3461555-3461574 Msa0830390:five_prime_UTR 45.0%
TGTGTGCGAGGGATTAAACT+GGG - chr5_4:3461556-3461575 Msa0830390:five_prime_UTR 45.0%
GGGATTAAACTGGGTGTGTT+TGG - chr5_4:3461565-3461584 Msa0830390:five_prime_UTR 45.0%
AACTGGGTGTGTTTGGATTG+AGG - chr5_4:3461572-3461591 Msa0830390:five_prime_UTR 45.0%
ACTGGGTGTGTTTGGATTGA+GGG - chr5_4:3461573-3461592 Msa0830390:five_prime_UTR 45.0%
!!! ATTTTTTAAATTTCTAAAAA+TGG - chr5_4:3458632-3458651 Msa0830390:intron 5.0%
CTCGTCTTCCAAAGGTCACT+AGG + chr5_4:3457682-3457701 None:intergenic 50.0%
GATGCAGTCATGCAGGCATT+TGG + chr5_4:3458076-3458095 None:intergenic 50.0%
AGATTGAAAACGCAACGGCG+AGG - chr5_4:3458370-3458389 Msa0830390:intron 50.0%
!! TTTTGAGGAGGGACGGACAT+AGG + chr5_4:3459059-3459078 None:intergenic 50.0%
GACGCGATGAGCTTTACAAG+CGG + chr5_4:3459118-3459137 None:intergenic 50.0%
TGCCCTGTGCAATGTTCACA+TGG - chr5_4:3459213-3459232 Msa0830390:CDS 50.0%
CTCAAAGAACCTCGCAAAGC+TGG - chr5_4:3459681-3459700 Msa0830390:CDS 50.0%
! AGAACCGTCTCTTGAGTTGC+AGG - chr5_4:3459705-3459724 Msa0830390:CDS 50.0%
CCAACCTGCAACTCAAGAGA+CGG + chr5_4:3459712-3459731 None:intergenic 50.0%
ACACACAAGTGGGGAATCTC+TGG + chr5_4:3460691-3460710 None:intergenic 50.0%
! TTTTACTGAGCCTGCAGGGA+AGG - chr5_4:3460966-3460985 Msa0830390:CDS 50.0%
ATTTGCAGGCTCCCATATGC+CGG - chr5_4:3461520-3461539 Msa0830390:five_prime_UTR 50.0%
CATTCCTTCAGCCGGCATAT+GGG + chr5_4:3461534-3461553 None:intergenic 50.0%
ACATTCCTTCAGCCGGCATA+TGG + chr5_4:3461535-3461554 None:intergenic 50.0%
GATTGAGGGTTTAGGAAGGG+AGG - chr5_4:3461587-3461606 Msa0830390:five_prime_UTR 50.0%
ACGGTTCTTCCAGCTTTGCG+AGG + chr5_4:3459693-3459712 None:intergenic 55.0%
! CCGTCTCTTGAGTTGCAGGT+TGG - chr5_4:3459709-3459728 Msa0830390:CDS 55.0%
GTGGCTCGCTCGTCTTCCAA+AGG + chr5_4:3457690-3457709 None:intergenic 60.0%
CCATCAGTTGCCTTCCCTGC+AGG + chr5_4:3460979-3460998 None:intergenic 60.0%
CCTGCAGGGAAGGCAACTGA+TGG - chr5_4:3460976-3460995 Msa0830390:CDS 60.0%
! GGCTCCCATATGCCGGCTGA+AGG - chr5_4:3461527-3461546 Msa0830390:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 3457641 3461764 3457641 ID=Msa0830390;Name=Msa0830390
chr5_4 mRNA 3457641 3461764 3457641 ID=Msa0830390-mRNA-1;Parent=Msa0830390;Name=Msa0830390-mRNA-1;_AED=0.13;_eAED=0.13;_QI=573|0.83|1|1|0.83|0.71|7|218|212
chr5_4 exon 3457641 3457877 3457641 ID=Msa0830390-mRNA-1:exon:1354;Parent=Msa0830390-mRNA-1
chr5_4 exon 3458042 3458193 3458042 ID=Msa0830390-mRNA-1:exon:1353;Parent=Msa0830390-mRNA-1
chr5_4 exon 3459210 3459251 3459210 ID=Msa0830390-mRNA-1:exon:1352;Parent=Msa0830390-mRNA-1
chr5_4 exon 3459341 3459505 3459341 ID=Msa0830390-mRNA-1:exon:1351;Parent=Msa0830390-mRNA-1
chr5_4 exon 3459679 3459757 3459679 ID=Msa0830390-mRNA-1:exon:1350;Parent=Msa0830390-mRNA-1
chr5_4 exon 3460882 3461087 3460882 ID=Msa0830390-mRNA-1:exon:1349;Parent=Msa0830390-mRNA-1
chr5_4 exon 3461216 3461764 3461216 ID=Msa0830390-mRNA-1:exon:1348;Parent=Msa0830390-mRNA-1
chr5_4 five_prime_UTR 3461216 3461764 3461216 ID=Msa0830390-mRNA-1:five_prime_utr;Parent=Msa0830390-mRNA-1
chr5_4 five_prime_UTR 3461064 3461087 3461064 ID=Msa0830390-mRNA-1:five_prime_utr;Parent=Msa0830390-mRNA-1
chr5_4 CDS 3460882 3461063 3460882 ID=Msa0830390-mRNA-1:cds;Parent=Msa0830390-mRNA-1
chr5_4 CDS 3459679 3459757 3459679 ID=Msa0830390-mRNA-1:cds;Parent=Msa0830390-mRNA-1
chr5_4 CDS 3459341 3459505 3459341 ID=Msa0830390-mRNA-1:cds;Parent=Msa0830390-mRNA-1
chr5_4 CDS 3459210 3459251 3459210 ID=Msa0830390-mRNA-1:cds;Parent=Msa0830390-mRNA-1
chr5_4 CDS 3458042 3458193 3458042 ID=Msa0830390-mRNA-1:cds;Parent=Msa0830390-mRNA-1
chr5_4 CDS 3457859 3457877 3457859 ID=Msa0830390-mRNA-1:cds;Parent=Msa0830390-mRNA-1
chr5_4 three_prime_UTR 3457641 3457858 3457641 ID=Msa0830390-mRNA-1:three_prime_utr;Parent=Msa0830390-mRNA-1
Gene Sequence

>Msa0830390

ATGGCTCGTGAGAAGATTCAGATAAAGAAGATTGAAAACGCAACGGCGAGGCAAGTGACTTTTTCAAAGAGAAGAAGAGGATTAATCAAAAAGGCTGAAGAACTCTCAGTTTTGTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGGAAACTCTTTGAATACTCCAACTTAAGCGTGAGGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAACCTCGCAAAGCTGGAAGAACCGTCTCTTGAGTTGCAGCTAGTTGAAAACAGCAACTGTTCTAGATTGAGCAAGGAAGTTGCTAAGAAGAGCCATCAATTAAGGCAGATGAGGGGAGAAGATCTTGAAGGTTTGAATGTGGAAGAATTACAACAATTGGAGAGGTCACTTGAAATTGGGTTGGGCCGTGTAATAGAAAACAAGGGAGAGAAGATCATGATGGAGATCAATGATCTCCAAAGAAAGGTTGCGGGCATGATTAACGACAGAATGGTTGGAGGTGATGAATATGAGAATGTGGTTAATGAAGGTCAATCCTCAGAATCTGTCACCAACGTTTACAACTCCATTGGTCCTCCCCAAGATTATGAGAGTTCAGATACATCGCTCAAGTTGGGGCTCCCATATGCCGGCTGA
Protein sequence

>Msa0830390

MAREKIQIKKIENATARQVTFSKRRRGLIKKAEELSVLCDADVALIIFSSTGKLFEYSNLSVREILERHHLHSKNLAKLEEPSLELQLVENSNCSRLSKEVAKKSHQLRQMRGEDLEGLNVEELQQLERSLEIGLGRVIENKGEKIMMEINDLQRKVAGMINDRMVGGDEYENVVNEGQSSESVTNVYNSIGPPQDYESSDTSLKLGLPYAG*