Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466090 | XP_003604300.2 | 80.952 | 126 | 24 | 0 | 2 | 127 | 204 | 329 | 1.82e-63 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466090 | sp|Q9T072|BH025_ARATH | 41.600 | 125 | 71 | 2 | 2 | 126 | 182 | 304 | 9.03e-20 | 86.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466090 | G7JFN8 | 80.952 | 126 | 24 | 0 | 2 | 127 | 204 | 329 | 8.69e-64 | 207 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004060 | Msa1466090 | 0.804374 | 2.227480e-49 | -8.615850e-47 |
| Msa0005000 | Msa1466090 | -0.801966 | 7.016888e-49 | -8.615850e-47 |
| Msa0006880 | Msa1466090 | 0.802408 | 5.691476e-49 | -8.615850e-47 |
| Msa0010020 | Msa1466090 | 0.833819 | 4.282502e-56 | -8.615850e-47 |
| Msa0014570 | Msa1466090 | 0.813470 | 2.517900e-51 | -8.615850e-47 |
| Msa0022750 | Msa1466090 | -0.800677 | 1.288290e-48 | -8.615850e-47 |
| Msa0027390 | Msa1466090 | 0.822441 | 2.365236e-53 | -8.615850e-47 |
| Msa0032320 | Msa1466090 | 0.817815 | 2.712038e-52 | -8.615850e-47 |
| Msa0032370 | Msa1466090 | 0.804580 | 2.017871e-49 | -8.615850e-47 |
| Msa0033880 | Msa1466090 | 0.804668 | 1.934225e-49 | -8.615850e-47 |
| Msa0037160 | Msa1466090 | 0.802452 | 5.573988e-49 | -8.615850e-47 |
| Msa0039250 | Msa1466090 | 0.819900 | 9.109940e-53 | -8.615850e-47 |
| Msa0045490 | Msa1466090 | 0.802430 | 5.630474e-49 | -8.615850e-47 |
| Msa0046760 | Msa1466090 | 0.802634 | 5.112181e-49 | -8.615850e-47 |
| Msa0055150 | Msa1466090 | 0.809528 | 1.809902e-50 | -8.615850e-47 |
| Msa0059890 | Msa1466090 | 0.808660 | 2.777532e-50 | -8.615850e-47 |
| Msa0081650 | Msa1466090 | 0.808551 | 2.929076e-50 | -8.615850e-47 |
| Msa0086840 | Msa1466090 | 0.807522 | 4.852310e-50 | -8.615850e-47 |
| Msa0090030 | Msa1466090 | 0.810859 | 9.348728e-51 | -8.615850e-47 |
| Msa0097950 | Msa1466090 | 0.804755 | 1.855340e-49 | -8.615850e-47 |
| Msa0098390 | Msa1466090 | -0.801583 | 8.410262e-49 | -8.615850e-47 |
| Msa0118000 | Msa1466090 | 0.830399 | 3.002707e-55 | -8.615850e-47 |
| Msa1363700 | Msa1466090 | 0.811313 | 7.453058e-51 | -8.615850e-47 |
| Msa1370620 | Msa1466090 | 0.808540 | 2.946134e-50 | -8.615850e-47 |
| Msa1371090 | Msa1466090 | 0.805501 | 1.294625e-49 | -8.615850e-47 |
| Msa1376200 | Msa1466090 | 0.802772 | 4.787580e-49 | -8.615850e-47 |
| Msa1384870 | Msa1466090 | 0.814899 | 1.218140e-51 | -8.615850e-47 |
| Msa1393800 | Msa1466090 | 0.816261 | 6.059057e-52 | -8.615850e-47 |
| Msa1422840 | Msa1466090 | 0.821013 | 5.060470e-53 | -8.615850e-47 |
| Msa1424780 | Msa1466090 | 0.836073 | 1.158487e-56 | -8.615850e-47 |
| Msa1428370 | Msa1466090 | 0.806714 | 7.193619e-50 | -8.615850e-47 |
| Msa1442220 | Msa1466090 | -0.806125 | 9.575516e-50 | -8.615850e-47 |
| Msa1449910 | Msa1466090 | 0.825407 | 4.766285e-54 | -8.615850e-47 |
| Msa1457430 | Msa1466090 | 0.803775 | 2.968168e-49 | -8.615850e-47 |
| Msa0610500 | Msa1466090 | 0.804651 | 1.950149e-49 | -8.615850e-47 |
| Msa0626680 | Msa1466090 | 0.883032 | 6.320995e-71 | -8.615850e-47 |
| Msa0628290 | Msa1466090 | 0.807433 | 5.067216e-50 | -8.615850e-47 |
| Msa0628500 | Msa1466090 | 0.815821 | 7.595941e-52 | -8.615850e-47 |
| Msa0633760 | Msa1466090 | 0.811124 | 8.190417e-51 | -8.615850e-47 |
| Msa0643250 | Msa1466090 | 0.802237 | 6.169678e-49 | -8.615850e-47 |
| Msa0651150 | Msa1466090 | 0.801961 | 7.034339e-49 | -8.615850e-47 |
| Msa0652300 | Msa1466090 | 0.808184 | 3.508358e-50 | -8.615850e-47 |
| Msa0664760 | Msa1466090 | 0.927432 | 1.185657e-91 | -8.615850e-47 |
| Msa0673270 | Msa1466090 | 0.829849 | 4.088360e-55 | -8.615850e-47 |
| Msa0675990 | Msa1466090 | 0.809272 | 2.053806e-50 | -8.615850e-47 |
| Msa0679100 | Msa1466090 | 0.800828 | 1.200307e-48 | -8.615850e-47 |
| Msa0679680 | Msa1466090 | 0.802001 | 6.900030e-49 | -8.615850e-47 |
| Msa0684500 | Msa1466090 | 0.815560 | 8.686098e-52 | -8.615850e-47 |
| Msa0686080 | Msa1466090 | 0.803039 | 4.215537e-49 | -8.615850e-47 |
| Msa0691050 | Msa1466090 | 0.800206 | 1.606927e-48 | -8.615850e-47 |
| Msa0744090 | Msa1466090 | 0.833907 | 4.071023e-56 | -8.615850e-47 |
| Msa0744100 | Msa1466090 | 0.824231 | 9.028904e-54 | -8.615850e-47 |
| Msa0749300 | Msa1466090 | 0.812390 | 4.343383e-51 | -8.615850e-47 |
| Msa0749330 | Msa1466090 | 0.802450 | 5.578878e-49 | -8.615850e-47 |
| Msa0756930 | Msa1466090 | 0.802373 | 5.786837e-49 | -8.615850e-47 |
| Msa0781270 | Msa1466090 | 0.804126 | 2.508783e-49 | -8.615850e-47 |
| Msa0788110 | Msa1466090 | 0.823527 | 1.319930e-53 | -8.615850e-47 |
| Msa0788120 | Msa1466090 | 0.806958 | 6.387265e-50 | -8.615850e-47 |
| Msa0803630 | Msa1466090 | 0.811133 | 8.154330e-51 | -8.615850e-47 |
| Msa0814630 | Msa1466090 | -0.808662 | 2.774506e-50 | -8.615850e-47 |
| Msa0825270 | Msa1466090 | 0.820506 | 6.615873e-53 | -8.615850e-47 |
| Msa0825280 | Msa1466090 | 0.838607 | 2.600588e-57 | -8.615850e-47 |
| Msa0830390 | Msa1466090 | 0.828049 | 1.115720e-54 | -8.615850e-47 |
| Msa0836500 | Msa1466090 | 0.800678 | 1.287496e-48 | -8.615850e-47 |
| Msa0127850 | Msa1466090 | 0.822953 | 1.797924e-53 | -8.615850e-47 |
| Msa0130240 | Msa1466090 | 0.811248 | 7.696459e-51 | -8.615850e-47 |
| Msa0133720 | Msa1466090 | 0.818170 | 2.253942e-52 | -8.615850e-47 |
| Msa0133820 | Msa1466090 | 0.809083 | 2.254897e-50 | -8.615850e-47 |
| Msa0165300 | Msa1466090 | 0.821781 | 3.364515e-53 | -8.615850e-47 |
| Msa0165440 | Msa1466090 | 0.816232 | 6.149793e-52 | -8.615850e-47 |
| Msa0185590 | Msa1466090 | 0.806831 | 6.795321e-50 | -8.615850e-47 |
| Msa0196020 | Msa1466090 | -0.800487 | 1.408678e-48 | -8.615850e-47 |
| Msa0198520 | Msa1466090 | 0.816718 | 4.786764e-52 | -8.615850e-47 |
| Msa0198530 | Msa1466090 | 0.822019 | 2.962920e-53 | -8.615850e-47 |
| Msa0208810 | Msa1466090 | 0.831134 | 1.982470e-55 | -8.615850e-47 |
| Msa0227230 | Msa1466090 | 0.801153 | 1.029673e-48 | -8.615850e-47 |
| Msa0227400 | Msa1466090 | 0.807499 | 4.906155e-50 | -8.615850e-47 |
| Msa1229850 | Msa1466090 | 0.803937 | 2.746381e-49 | -8.615850e-47 |
| Msa1249920 | Msa1466090 | 0.821432 | 4.049475e-53 | -8.615850e-47 |
| Msa1254710 | Msa1466090 | 0.803190 | 3.923839e-49 | -8.615850e-47 |
| Msa1280620 | Msa1466090 | 0.817469 | 3.244844e-52 | -8.615850e-47 |
| Msa1291350 | Msa1466090 | 0.810200 | 1.297120e-50 | -8.615850e-47 |
| Msa1293480 | Msa1466090 | -0.835087 | 2.057485e-56 | -8.615850e-47 |
| Msa1294960 | Msa1466090 | 0.819387 | 1.192862e-52 | -8.615850e-47 |
| Msa1300860 | Msa1466090 | 0.816044 | 6.773194e-52 | -8.615850e-47 |
| Msa1311960 | Msa1466090 | 0.815046 | 1.129531e-51 | -8.615850e-47 |
| Msa1320820 | Msa1466090 | 0.817783 | 2.756800e-52 | -8.615850e-47 |
| Msa1338250 | Msa1466090 | 0.803346 | 3.643047e-49 | -8.615850e-47 |
| Msa1340040 | Msa1466090 | -0.815373 | 9.555360e-52 | -8.615850e-47 |
| Msa0381000 | Msa1466090 | 0.817654 | 2.947284e-52 | -8.615850e-47 |
| Msa0381080 | Msa1466090 | 0.809653 | 1.701655e-50 | -8.615850e-47 |
| Msa0392200 | Msa1466090 | 0.812195 | 4.790973e-51 | -8.615850e-47 |
| Msa0405650 | Msa1466090 | 0.810218 | 1.285950e-50 | -8.615850e-47 |
| Msa0410300 | Msa1466090 | 0.823616 | 1.258368e-53 | -8.615850e-47 |
| Msa0411410 | Msa1466090 | 0.805856 | 1.090811e-49 | -8.615850e-47 |
| Msa0413730 | Msa1466090 | 0.800454 | 1.430121e-48 | -8.615850e-47 |
| Msa0415810 | Msa1466090 | 0.808477 | 3.038270e-50 | -8.615850e-47 |
| Msa0428050 | Msa1466090 | 0.830533 | 2.782994e-55 | -8.615850e-47 |
| Msa0428240 | Msa1466090 | 0.828556 | 8.417196e-55 | -8.615850e-47 |
| Msa0437510 | Msa1466090 | 0.810163 | 1.321632e-50 | -8.615850e-47 |
| Msa0455740 | Msa1466090 | 0.804176 | 2.449209e-49 | -8.615850e-47 |
| Msa0461590 | Msa1466090 | 0.832226 | 1.066799e-55 | -8.615850e-47 |
| Msa0474590 | Msa1466090 | 0.808823 | 2.562701e-50 | -8.615850e-47 |
| Msa0980940 | Msa1466090 | 0.824539 | 7.640090e-54 | -8.615850e-47 |
| Msa0997430 | Msa1466090 | 0.808206 | 3.470167e-50 | -8.615850e-47 |
| Msa1001350 | Msa1466090 | 0.805690 | 1.181663e-49 | -8.615850e-47 |
| Msa1004420 | Msa1466090 | 0.803652 | 3.146866e-49 | -8.615850e-47 |
| Msa1010070 | Msa1466090 | 0.812695 | 3.725778e-51 | -8.615850e-47 |
| Msa1031930 | Msa1466090 | 0.800891 | 1.164926e-48 | -8.615850e-47 |
| Msa1032170 | Msa1466090 | 0.823578 | 1.284177e-53 | -8.615850e-47 |
| Msa1038080 | Msa1466090 | 0.806731 | 7.133584e-50 | -8.615850e-47 |
| Msa1040840 | Msa1466090 | 0.810191 | 1.303325e-50 | -8.615850e-47 |
| Msa1041520 | Msa1466090 | 0.818167 | 2.258170e-52 | -8.615850e-47 |
| Msa1080800 | Msa1466090 | 0.800670 | 1.292266e-48 | -8.615850e-47 |
| Msa1081560 | Msa1466090 | 0.808168 | 3.535844e-50 | -8.615850e-47 |
| Msa0239940 | Msa1466090 | 0.813619 | 2.335712e-51 | -8.615850e-47 |
| Msa0259270 | Msa1466090 | 0.808156 | 3.556623e-50 | -8.615850e-47 |
| Msa0264530 | Msa1466090 | 0.809141 | 2.190850e-50 | -8.615850e-47 |
| Msa0275400 | Msa1466090 | -0.800712 | 1.267022e-48 | -8.615850e-47 |
| Msa0276920 | Msa1466090 | 0.811300 | 7.499853e-51 | -8.615850e-47 |
| Msa0288730 | Msa1466090 | 0.826621 | 2.453645e-54 | -8.615850e-47 |
| Msa0308200 | Msa1466090 | 0.823033 | 1.722296e-53 | -8.615850e-47 |
| Msa0343190 | Msa1466090 | 0.812015 | 5.243612e-51 | -8.615850e-47 |
| Msa0346990 | Msa1466090 | 0.812362 | 4.405398e-51 | -8.615850e-47 |
| Msa0358670 | Msa1466090 | 0.830708 | 2.522241e-55 | -8.615850e-47 |
| Msa0363810 | Msa1466090 | 0.825598 | 4.294568e-54 | -8.615850e-47 |
| Msa1113590 | Msa1466090 | 0.833520 | 5.086159e-56 | -8.615850e-47 |
| Msa1118940 | Msa1466090 | 0.811296 | 7.516871e-51 | -8.615850e-47 |
| Msa1127130 | Msa1466090 | 0.819453 | 1.152471e-52 | -8.615850e-47 |
| Msa1129400 | Msa1466090 | 0.811617 | 6.400204e-51 | -8.615850e-47 |
| Msa1129690 | Msa1466090 | 0.802676 | 5.010599e-49 | -8.615850e-47 |
| Msa1133400 | Msa1466090 | 0.805104 | 1.568372e-49 | -8.615850e-47 |
| Msa1158230 | Msa1466090 | 0.810204 | 1.294861e-50 | -8.615850e-47 |
| Msa1158660 | Msa1466090 | 0.802548 | 5.323526e-49 | -8.615850e-47 |
| Msa1166410 | Msa1466090 | 0.803068 | 4.158577e-49 | -8.615850e-47 |
| Msa1174850 | Msa1466090 | 0.806974 | 6.338458e-50 | -8.615850e-47 |
| Msa1176270 | Msa1466090 | 0.806071 | 9.826580e-50 | -8.615850e-47 |
| Msa1198880 | Msa1466090 | 0.800947 | 1.134758e-48 | -8.615850e-47 |
| Msa1202150 | Msa1466090 | 0.814638 | 1.391107e-51 | -8.615850e-47 |
| Msa1219110 | Msa1466090 | 0.802559 | 5.296826e-49 | -8.615850e-47 |
| Msa0498560 | Msa1466090 | 0.811546 | 6.631917e-51 | -8.615850e-47 |
| Msa0506890 | Msa1466090 | 0.801585 | 8.398936e-49 | -8.615850e-47 |
| Msa0506940 | Msa1466090 | 0.800750 | 1.244608e-48 | -8.615850e-47 |
| Msa0517090 | Msa1466090 | 0.813935 | 1.989944e-51 | -8.615850e-47 |
| Msa0519130 | Msa1466090 | 0.804038 | 2.616367e-49 | -8.615850e-47 |
| Msa0522640 | Msa1466090 | 0.802272 | 6.070227e-49 | -8.615850e-47 |
| Msa0532980 | Msa1466090 | 0.806490 | 8.021995e-50 | -8.615850e-47 |
| Msa0545060 | Msa1466090 | 0.814576 | 1.435888e-51 | -8.615850e-47 |
| Msa0556860 | Msa1466090 | 0.816593 | 5.106050e-52 | -8.615850e-47 |
| Msa0557050 | Msa1466090 | 0.816310 | 5.906301e-52 | -8.615850e-47 |
| Msa0565940 | Msa1466090 | 0.808523 | 2.970900e-50 | -8.615850e-47 |
| Msa0576680 | Msa1466090 | 0.817944 | 2.534860e-52 | -8.615850e-47 |
| Msa0578090 | Msa1466090 | 0.899443 | 1.972155e-77 | -8.615850e-47 |
| Msa0584550 | Msa1466090 | 0.831531 | 1.583783e-55 | -8.615850e-47 |
| Msa0586850 | Msa1466090 | 0.914428 | 1.939835e-84 | -8.615850e-47 |
| Msa0588120 | Msa1466090 | 0.819300 | 1.248498e-52 | -8.615850e-47 |
| Msa0844230 | Msa1466090 | 0.800621 | 1.322780e-48 | -8.615850e-47 |
| Msa0849810 | Msa1466090 | 0.801130 | 1.041193e-48 | -8.615850e-47 |
| Msa0850710 | Msa1466090 | 0.803834 | 2.884647e-49 | -8.615850e-47 |
| Msa0851470 | Msa1466090 | 0.837858 | 4.056134e-57 | -8.615850e-47 |
| Msa0855160 | Msa1466090 | -0.814142 | 1.790640e-51 | -8.615850e-47 |
| Msa0880040 | Msa1466090 | 0.824399 | 8.244102e-54 | -8.615850e-47 |
| Msa0881580 | Msa1466090 | 0.803868 | 2.838634e-49 | -8.615850e-47 |
| Msa0888940 | Msa1466090 | 0.806155 | 9.436433e-50 | -8.615850e-47 |
| Msa0922030 | Msa1466090 | 0.806369 | 8.507565e-50 | -8.615850e-47 |
| Msa0939000 | Msa1466090 | 0.810881 | 9.245346e-51 | -8.615850e-47 |
| Msa0944660 | Msa1466090 | 0.805459 | 1.321147e-49 | -8.615850e-47 |
| Msa0947530 | Msa1466090 | -0.808020 | 3.802221e-50 | -8.615850e-47 |
| Msa0965020 | Msa1466090 | 0.801164 | 1.024302e-48 | -8.615850e-47 |
| Msa0975940 | Msa1466090 | 0.811914 | 5.516301e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466090 | MtrunA17_Chr4g0002781 | 80.952 | 126 | 24 | 0 | 2 | 127 | 204 | 329 | 1.67e-67 | 207 |
| Msa1466090 | MtrunA17_Chr4g0002801 | 76.154 | 130 | 28 | 1 | 1 | 127 | 181 | 310 | 3.57e-64 | 199 |
| Msa1466090 | MtrunA17_Chr2g0333621 | 51.587 | 126 | 59 | 1 | 2 | 127 | 168 | 291 | 2.26e-34 | 121 |
| Msa1466090 | MtrunA17_Chr2g0333641 | 50.000 | 126 | 58 | 3 | 2 | 127 | 167 | 287 | 1.36e-30 | 112 |
| Msa1466090 | MtrunA17_Chr7g0225901 | 41.727 | 139 | 72 | 5 | 2 | 137 | 118 | 250 | 6.69e-27 | 100 |
| Msa1466090 | MtrunA17_Chr8g0336681 | 44.697 | 132 | 67 | 2 | 1 | 127 | 185 | 315 | 9.11e-27 | 102 |
| Msa1466090 | MtrunA17_Chr5g0400621 | 44.186 | 129 | 69 | 1 | 2 | 130 | 187 | 312 | 1.07e-25 | 99.4 |
| Msa1466090 | MtrunA17_Chr4g0054581 | 45.385 | 130 | 64 | 3 | 2 | 127 | 228 | 354 | 2.74e-24 | 96.3 |
| Msa1466090 | MtrunA17_Chr2g0333611 | 43.511 | 131 | 59 | 4 | 2 | 127 | 75 | 195 | 4.69e-24 | 92.8 |
| Msa1466090 | MtrunA17_Chr7g0233441 | 41.406 | 128 | 58 | 3 | 2 | 127 | 64 | 176 | 8.28e-24 | 91.7 |
| Msa1466090 | MtrunA17_Chr5g0400641 | 40.945 | 127 | 70 | 2 | 2 | 127 | 28 | 150 | 1.46e-22 | 87.4 |
| Msa1466090 | MtrunA17_Chr5g0400661 | 40.441 | 136 | 71 | 2 | 2 | 127 | 179 | 314 | 2.03e-22 | 90.5 |
| Msa1466090 | MtrunA17_Chr4g0002831 | 41.860 | 129 | 56 | 3 | 2 | 127 | 72 | 184 | 2.51e-22 | 87.8 |
| Msa1466090 | MtrunA17_Chr4g0002851 | 39.683 | 126 | 55 | 2 | 2 | 127 | 72 | 176 | 5.31e-21 | 84.3 |
| Msa1466090 | MtrunA17_Chr4g0054561 | 44.094 | 127 | 64 | 4 | 2 | 127 | 185 | 305 | 9.13e-21 | 85.9 |
| Msa1466090 | MtrunA17_Chr4g0033391 | 41.406 | 128 | 65 | 3 | 2 | 127 | 177 | 296 | 9.72e-21 | 85.9 |
| Msa1466090 | MtrunA17_Chr6g0468491 | 38.281 | 128 | 72 | 2 | 2 | 127 | 167 | 289 | 1.64e-20 | 85.1 |
| Msa1466090 | MtrunA17_Chr2g0307131 | 39.683 | 126 | 73 | 2 | 2 | 127 | 209 | 331 | 1.01e-19 | 83.6 |
| Msa1466090 | MtrunA17_Chr4g0033291 | 39.844 | 128 | 67 | 3 | 2 | 127 | 185 | 304 | 4.56e-19 | 81.3 |
| Msa1466090 | MtrunA17_Chr2g0307141 | 38.889 | 126 | 74 | 2 | 2 | 127 | 213 | 335 | 7.63e-19 | 81.3 |
| Msa1466090 | MtrunA17_Chr4g0054551 | 42.520 | 127 | 66 | 4 | 2 | 127 | 185 | 305 | 8.15e-19 | 80.9 |
| Msa1466090 | MtrunA17_Chr2g0280161 | 41.538 | 130 | 70 | 3 | 2 | 129 | 207 | 332 | 2.67e-18 | 79.7 |
| Msa1466090 | MtrunA17_Chr4g0033281 | 39.683 | 126 | 69 | 2 | 2 | 127 | 183 | 301 | 6.25e-17 | 75.5 |
| Msa1466090 | MtrunA17_Chr4g0049331 | 36.641 | 131 | 74 | 3 | 2 | 129 | 165 | 289 | 2.13e-16 | 73.9 |
| Msa1466090 | MtrunA17_Chr5g0400671 | 35.714 | 126 | 75 | 1 | 2 | 127 | 184 | 303 | 3.31e-16 | 73.6 |
| Msa1466090 | MtrunA17_Chr7g0249811 | 34.127 | 126 | 71 | 1 | 2 | 127 | 195 | 308 | 2.45e-14 | 68.6 |
| Msa1466090 | MtrunA17_Chr4g0054621 | 35.156 | 128 | 69 | 3 | 2 | 127 | 202 | 317 | 2.53e-14 | 68.6 |
| Msa1466090 | MtrunA17_Chr4g0054571 | 37.879 | 132 | 74 | 3 | 2 | 127 | 180 | 309 | 5.08e-14 | 67.4 |
| Msa1466090 | MtrunA17_Chr6g0468461 | 32.540 | 126 | 68 | 2 | 2 | 127 | 203 | 311 | 1.15e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466090 | AT4G37850.2 | 41.600 | 125 | 71 | 2 | 2 | 126 | 182 | 304 | 9.18e-21 | 86.3 |
| Msa1466090 | AT4G37850.1 | 41.600 | 125 | 71 | 2 | 2 | 126 | 182 | 304 | 9.18e-21 | 86.3 |
| Msa1466090 | AT2G22760.2 | 38.194 | 144 | 72 | 5 | 1 | 136 | 148 | 282 | 6.74e-19 | 80.9 |
| Msa1466090 | AT2G22760.1 | 37.778 | 135 | 68 | 4 | 1 | 127 | 148 | 274 | 8.77e-18 | 77.8 |
| Msa1466090 | AT2G22770.1 | 37.589 | 141 | 72 | 4 | 1 | 127 | 161 | 299 | 1.75e-16 | 74.7 |
| Msa1466090 | AT2G22750.3 | 42.188 | 128 | 69 | 3 | 2 | 126 | 184 | 309 | 1.20e-14 | 69.7 |
| Msa1466090 | AT2G22750.4 | 42.188 | 128 | 69 | 3 | 2 | 126 | 184 | 309 | 1.22e-14 | 69.7 |
| Msa1466090 | AT2G22750.2 | 42.188 | 128 | 69 | 3 | 2 | 126 | 156 | 281 | 1.37e-14 | 69.3 |
| Msa1466090 | AT2G22750.5 | 42.969 | 128 | 68 | 3 | 2 | 126 | 180 | 305 | 1.45e-14 | 69.3 |
| Msa1466090 | AT2G22750.1 | 42.188 | 128 | 69 | 3 | 2 | 126 | 156 | 281 | 1.49e-14 | 69.3 |
Find 20 sgRNAs with CRISPR-Local
Find 24 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACTCTTGCTTCAATATC+TGG | 0.292442 | tig0045893:-780 | Msa1466090:intergenic |
| ATCCATTGTGAGAAACAAAA+TGG | 0.294137 | tig0045893:+825 | Msa1466090:CDS |
| GGTAGCAGTGTCTTGCCATT+TGG | 0.333645 | tig0045893:+900 | Msa1466090:CDS |
| GTAGCAGTGTCTTGCCATTT+GGG | 0.353594 | tig0045893:+901 | Msa1466090:CDS |
| CAATATCTGGAAGGATACTA+TGG | 0.374591 | tig0045893:-767 | Msa1466090:intergenic |
| AGAAACAAGAAGAAAATGTT+GGG | 0.406463 | tig0045893:+652 | Msa1466090:CDS |
| GAAATAGTTGATTTCCCAAA+TGG | 0.414232 | tig0045893:-915 | Msa1466090:intergenic |
| TTCCATCACTATAATTGCTC+GGG | 0.454181 | tig0045893:+935 | Msa1466090:CDS |
| GAGAAACAAGAAGAAAATGT+TGG | 0.486811 | tig0045893:+651 | Msa1466090:CDS |
| TTTCCATCACTATAATTGCT+CGG | 0.489893 | tig0045893:+934 | Msa1466090:CDS |
| GATATTGAAGCAAGAGTCAT+GGG | 0.509819 | tig0045893:+783 | Msa1466090:CDS |
| AATCTTCAACTGTTTGTCAC+TGG | 0.515596 | tig0045893:+879 | Msa1466090:CDS |
| TATTCATGTTCTTGATGAGT+TGG | 0.536565 | tig0045893:+977 | Msa1466090:CDS |
| TACCCGAGCAATTATAGTGA+TGG | 0.541857 | tig0045893:-937 | Msa1466090:intergenic |
| AGATATTGAAGCAAGAGTCA+TGG | 0.568127 | tig0045893:+782 | Msa1466090:CDS |
| AAAGCTTCAATACTTCAAGC+AGG | 0.588462 | tig0045893:+585 | Msa1466090:CDS |
| AACAAATCACAAAATTCATG+TGG | 0.589942 | tig0045893:+693 | Msa1466090:CDS |
| CTCTTGCTTCAATATCTGGA+AGG | 0.599921 | tig0045893:-776 | Msa1466090:intergenic |
| TGAAGCAAGAGTCATGGGAA+AGG | 0.625639 | tig0045893:+788 | Msa1466090:CDS |
| GAAACAAGAAGAAAATGTTG+GGG | 0.696078 | tig0045893:+653 | Msa1466090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGAAACAAGAAGAAAATGTT+GGG | + | tig0045893:652-671 | Msa1466090:CDS | 25.0% |
| !!! | TGAATTTTGTGATTTGTTGA+GGG | - | tig0045893:691-710 | Msa1466090:intergenic | 25.0% |
| !!! | ATGAATTTTGTGATTTGTTG+AGG | - | tig0045893:692-711 | Msa1466090:intergenic | 25.0% |
| ! | AACAAATCACAAAATTCATG+TGG | + | tig0045893:693-712 | Msa1466090:CDS | 25.0% |
| !! | ACAGTTGAAGATTTTCAATA+TGG | - | tig0045893:872-891 | Msa1466090:intergenic | 25.0% |
| GAGAAACAAGAAGAAAATGT+TGG | + | tig0045893:651-670 | Msa1466090:CDS | 30.0% | |
| GAAACAAGAAGAAAATGTTG+GGG | + | tig0045893:653-672 | Msa1466090:CDS | 30.0% | |
| ATCCATTGTGAGAAACAAAA+TGG | + | tig0045893:825-844 | Msa1466090:CDS | 30.0% | |
| !! | TTCCATTTTGTTTCTCACAA+TGG | - | tig0045893:830-849 | Msa1466090:intergenic | 30.0% |
| ! | GAAATAGTTGATTTCCCAAA+TGG | - | tig0045893:918-937 | Msa1466090:intergenic | 30.0% |
| TTTCCATCACTATAATTGCT+CGG | + | tig0045893:934-953 | Msa1466090:CDS | 30.0% | |
| TATTCATGTTCTTGATGAGT+TGG | + | tig0045893:977-996 | Msa1466090:CDS | 30.0% | |
| AAAGCTTCAATACTTCAAGC+AGG | + | tig0045893:585-604 | Msa1466090:CDS | 35.0% | |
| CAATATCTGGAAGGATACTA+TGG | - | tig0045893:770-789 | Msa1466090:intergenic | 35.0% | |
| ATGACTCTTGCTTCAATATC+TGG | - | tig0045893:783-802 | Msa1466090:intergenic | 35.0% | |
| AGATATTGAAGCAAGAGTCA+TGG | + | tig0045893:782-801 | Msa1466090:CDS | 35.0% | |
| GATATTGAAGCAAGAGTCAT+GGG | + | tig0045893:783-802 | Msa1466090:CDS | 35.0% | |
| AATCTTCAACTGTTTGTCAC+TGG | + | tig0045893:879-898 | Msa1466090:CDS | 35.0% | |
| TTCCATCACTATAATTGCTC+GGG | + | tig0045893:935-954 | Msa1466090:CDS | 35.0% | |
| CTCTTGCTTCAATATCTGGA+AGG | - | tig0045893:779-798 | Msa1466090:intergenic | 40.0% | |
| TACCCGAGCAATTATAGTGA+TGG | - | tig0045893:940-959 | Msa1466090:intergenic | 40.0% | |
| TGAAGCAAGAGTCATGGGAA+AGG | + | tig0045893:788-807 | Msa1466090:CDS | 45.0% | |
| ! | GTAGCAGTGTCTTGCCATTT+GGG | + | tig0045893:901-920 | Msa1466090:CDS | 45.0% |
| GGTAGCAGTGTCTTGCCATT+TGG | + | tig0045893:900-919 | Msa1466090:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0045893 | gene | 579 | 1013 | 579 | ID=Msa1466090;Name=Msa1466090 |
| tig0045893 | mRNA | 579 | 1013 | 579 | ID=Msa1466090-mRNA-1;Parent=Msa1466090;Name=Msa1466090-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|-1|0|1|-1|1|1|0|144 |
| tig0045893 | exon | 579 | 1013 | 579 | ID=Msa1466090-mRNA-1:exon:24982;Parent=Msa1466090-mRNA-1 |
| tig0045893 | CDS | 579 | 1013 | 579 | ID=Msa1466090-mRNA-1:cds;Parent=Msa1466090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
