AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0888940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0888940 MtrunA17_Chr6g0461511 99.107 560 5 0 1 560 1 560 0.0 1159
Msa0888940 MtrunA17_Chr6g0461471 63.557 343 119 4 22 360 1 341 9.18e-150 433
Msa0888940 MtrunA17_Chr1g0149501 39.548 177 97 3 374 550 30 196 8.38e-35 132
Msa0888940 MtrunA17_Chr4g0055251 41.892 74 43 0 477 550 3 76 4.06e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0888940 AT5G18200.1 52.695 334 154 2 28 358 16 348 8.67e-131 386

Find 155 sgRNAs with CRISPR-Local

Find 459 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGAAAACAACTGTGATTT+TGG 0.113532 6_1:-54503200 Msa0888940:CDS
GAAGAAAGCTTCGGACTTTA+AGG 0.118306 6_1:-54508857 Msa0888940:CDS
TTTGAGCAAATGAGACTTTC+TGG 0.153740 6_1:+54502556 None:intergenic
GAAAGAACGAATGGTGAATT+AGG 0.182607 6_1:+54509096 None:intergenic
TCATTATATGATGTTATCTT+AGG 0.214283 6_1:-54502392 Msa0888940:three_prime_UTR
TCAGAATTCAATTACCTCTT+TGG 0.253375 6_1:+54503421 None:intergenic
TCCTAGCCAATCTGATTTAT+AGG 0.268321 6_1:-54502481 Msa0888940:three_prime_UTR
GATTCTTCCAGAAGGAGATT+TGG 0.282702 6_1:+54502598 None:intergenic
CCATTTCATCATCCAATTCA+TGG 0.288659 6_1:+54505518 None:intergenic
CTCGAGAGTATCTGCTGAAT+TGG 0.290913 6_1:-54503303 Msa0888940:CDS
AGAATTAGAAATGGAAAATT+CGG 0.308880 6_1:-54502825 Msa0888940:CDS
CTCTGCACACTTCCATGAAT+TGG 0.309156 6_1:-54505530 Msa0888940:CDS
ATGAACCGAATTGGAAGATT+AGG 0.317682 6_1:-54508732 Msa0888940:CDS
ATCTCTCCCAAATCTCCTTC+TGG 0.323139 6_1:-54502605 Msa0888940:three_prime_UTR
GAAACATTGTTTGGAACAAT+TGG 0.325735 6_1:+54505718 None:intergenic
ATTCTTCCAGAAGGAGATTT+GGG 0.325851 6_1:+54502599 None:intergenic
GCGTTTGCCACCAACGGTTT+TGG 0.330783 6_1:+54509134 None:intergenic
CATCCATCACCATTTCTAAC+AGG 0.340093 6_1:+54503079 None:intergenic
GTTGGATGGTGGTGAGGTTT+TGG 0.341105 6_1:-54508656 Msa0888940:CDS
TCGCAGTTTCAATTACTTCA+TGG 0.342193 6_1:+54503026 None:intergenic
CAGTAATAGGATCAGAGAAT+TGG 0.347025 6_1:-54508533 Msa0888940:CDS
TAGCCGCATCTCTCTGACTT+AGG 0.354258 6_1:-54509271 Msa0888940:five_prime_UTR
TACAAGTGCTTAATGTACTT+TGG 0.359441 6_1:-54502416 Msa0888940:three_prime_UTR
CAAATCTAACCTTTGGTCAT+TGG 0.362322 6_1:+54502439 None:intergenic
ACAAGTGCTTAATGTACTTT+GGG 0.389424 6_1:-54502415 Msa0888940:three_prime_UTR
GCAGCATCCTCAGGCAAAAC+AGG 0.393377 6_1:+54504117 None:intergenic
TTTACCGAAAATCAACGGTT+TGG 0.393669 6_1:-54508912 Msa0888940:CDS
CTCCTCAAAACCGCCGGATT+CGG 0.396406 6_1:+54508697 None:intergenic
AAGAAAGCTTCGGACTTTAA+GGG 0.397833 6_1:-54508856 Msa0888940:CDS
AATCAACGGTTTGGAATGAA+TGG 0.400331 6_1:-54508903 Msa0888940:CDS
AAAGAACGAATGGTGAATTA+GGG 0.400381 6_1:+54509097 None:intergenic
TGAGTCTATCAAATATGTTC+AGG 0.400935 6_1:-54508503 Msa0888940:intron
TGAACCGAATTGGAAGATTA+GGG 0.405403 6_1:-54508731 Msa0888940:CDS
AGACGGGCAGAAACATTGTT+TGG 0.406511 6_1:+54505709 None:intergenic
AATGTCTGTAATATGTCTTT+CGG 0.410278 6_1:+54502926 None:intergenic
CATTGAGAGTCCGGTGCATT+CGG 0.410660 6_1:-54508608 Msa0888940:CDS
TTCCGTTTGATGAACCGAAT+TGG 0.416004 6_1:-54508741 Msa0888940:CDS
CCATGAATTGGATGATGAAA+TGG 0.416074 6_1:-54505518 Msa0888940:intron
TTCTAGATTAGAATTAGAAA+TGG 0.416916 6_1:-54502834 Msa0888940:CDS
TAGATTAAAAGTGGAACATC+TGG 0.419148 6_1:-54502800 Msa0888940:three_prime_UTR
TTCCAATTCGGTTCATCAAA+CGG 0.423615 6_1:+54508739 None:intergenic
CTGAATTGGGCACGAGCCAT+TGG 0.424435 6_1:-54503289 Msa0888940:CDS
AACAATGTTTCTGCCCGTCT+TGG 0.431095 6_1:-54505706 Msa0888940:CDS
CAGAGCTGGCATACAGTCAT+TGG 0.433137 6_1:-54504209 Msa0888940:CDS
ACTTGTACAAATCTAACCTT+TGG 0.433997 6_1:+54502432 None:intergenic
GGAAGTGTGCAGAGTGATAC+CGG 0.436493 6_1:+54505539 None:intergenic
ACTAGTCCATTGCGTGGTGA+TGG 0.443182 6_1:-54504234 Msa0888940:CDS
GGTGCATTCGGAGCAGTTGT+TGG 0.443840 6_1:-54508596 Msa0888940:CDS
CCTCAGCTGATTCCGACAAC+TGG 0.444495 6_1:-54504171 Msa0888940:CDS
ATCCTTCATATTTCCAAGAC+GGG 0.444712 6_1:+54505693 None:intergenic
TTGAGCAAATGAGACTTTCT+GGG 0.449991 6_1:+54502557 None:intergenic
AGAATCTTTGCAGCATCCTC+AGG 0.453021 6_1:+54504108 None:intergenic
TCATTCTCATAGTCAAATCC+TGG 0.454234 6_1:-54505746 Msa0888940:CDS
GATGCATTAGCTCGCAAGAC+TGG 0.455880 6_1:-54503142 Msa0888940:CDS
ATTTGGATCTTCTTCCTCAT+CGG 0.456914 6_1:+54508939 None:intergenic
ACAACCCTAATCTTCCAATT+CGG 0.457062 6_1:+54508727 None:intergenic
TGCCCGTCTTGGAAATATGA+AGG 0.460206 6_1:-54505695 Msa0888940:CDS
GGTTGTTGAGAGTCCGAATC+CGG 0.461837 6_1:-54508710 Msa0888940:CDS
GAGCCATTGGGAGAGAGCAC+GGG 0.469261 6_1:-54503276 Msa0888940:CDS
TTGAGATATGGGTTGTTCCC+CGG 0.472936 6_1:-54505558 Msa0888940:CDS
TCGAGAGTATCTGCTGAATT+GGG 0.475872 6_1:-54503302 Msa0888940:CDS
CTATAATCCACAATCTTAGT+TGG 0.475886 6_1:+54503458 None:intergenic
AAGTGTTTGCTGAAAGTGTT+TGG 0.476194 6_1:+54509239 None:intergenic
AGCCGCATCTCTCTGACTTA+GGG 0.479326 6_1:-54509270 Msa0888940:five_prime_UTR
GAATTCAATTACCTCTTTGG+TGG 0.480591 6_1:+54503424 None:intergenic
CGTATAATACGAATCCTAGT+AGG 0.484679 6_1:-54508825 Msa0888940:CDS
AGAGGAAGACCTGTTAGAAA+TGG 0.484950 6_1:-54503088 Msa0888940:CDS
AAAACCTCGCCAACATCCTT+CGG 0.485711 6_1:+54508565 None:intergenic
GAGAGATGCGGCTATTTGAA+TGG 0.486842 6_1:+54509280 None:intergenic
TGAATTGGGCACGAGCCATT+GGG 0.487838 6_1:-54503288 Msa0888940:CDS
GAGACTTTCTGGGATTTCAC+AGG 0.490453 6_1:+54502567 None:intergenic
AGTGTTACAACCGTACTCAT+AGG 0.490629 6_1:+54502533 None:intergenic
AGCACAGTCAATTAAAACTA+AGG 0.496819 6_1:+54502771 None:intergenic
CGAGCCATTGGGAGAGAGCA+CGG 0.499186 6_1:-54503277 Msa0888940:CDS
TTACAGGCACTTGATCTTGG+AGG 0.500262 6_1:-54504327 Msa0888940:intron
GATGACGGGTTTGCGTTGGA+TGG 0.501407 6_1:-54508670 Msa0888940:CDS
AAGTGGCGAAGAGAAGTCTT+TGG 0.504021 6_1:-54502978 Msa0888940:CDS
AAAAGACATCTTTCTAAGAG+TGG 0.507146 6_1:+54504293 None:intergenic
TGCGGCTATTTGAATGGAGA+AGG 0.509695 6_1:+54509286 None:intergenic
GGAACAACCCATATCTCAAA+AGG 0.510202 6_1:+54505562 None:intergenic
CCAAGCTCAAAACCAGTTGT+CGG 0.513221 6_1:+54504159 None:intergenic
AAGTAATTGAAACTGCGATC+GGG 0.517225 6_1:-54503021 Msa0888940:CDS
GTGTGAATCATAAAGTTGTA+TGG 0.517550 6_1:+54504255 None:intergenic
ATCAACGGTTTGGAATGAAT+GGG 0.522843 6_1:-54508902 Msa0888940:CDS
TGATGTTGTCATTGAGAGTC+CGG 0.523615 6_1:-54508617 Msa0888940:CDS
TTTGGATGACGGGTTTGCGT+TGG 0.529055 6_1:-54508674 Msa0888940:CDS
TTTACCTCCAACTAAGATTG+TGG 0.530003 6_1:-54503465 Msa0888940:CDS
ACCATTCGTTCTTTCAACAC+TGG 0.531477 6_1:-54509088 Msa0888940:intron
GATTGAAGAAGAGGATAGGA+AGG 0.534376 6_1:-54503219 Msa0888940:CDS
TATTTGTGACATTCAACTTG+AGG 0.538401 6_1:-54505644 Msa0888940:CDS
AAGCTTCCTATAAATCAGAT+TGG 0.539524 6_1:+54502475 None:intergenic
CTAGTCCATTGCGTGGTGAT+GGG 0.539912 6_1:-54504233 Msa0888940:CDS
GATTTGACGCCGAAGGATGT+TGG 0.540124 6_1:-54508574 Msa0888940:CDS
TTTGCTCAAACCTATGAGTA+CGG 0.540166 6_1:-54502543 Msa0888940:three_prime_UTR
CGGAACCAATGAAAAGAAGT+AGG 0.542610 6_1:+54505600 None:intergenic
AATTCGGCATAGATTAAAAG+TGG 0.542885 6_1:-54502809 Msa0888940:exon
ATGAGAACCAAAACCGTTGG+TGG 0.543334 6_1:-54509141 Msa0888940:CDS
GACGGGTTTGCGTTGGATGG+TGG 0.544109 6_1:-54508667 Msa0888940:CDS
TCCAATTTACCGAAAATCAA+CGG 0.544867 6_1:-54508917 Msa0888940:CDS
AGATAAAACGAAGAAAGCTT+CGG 0.545303 6_1:-54508866 Msa0888940:CDS
TTGGAACAATTGGCAAGCCC+AGG 0.545421 6_1:+54505728 None:intergenic
ACACACGGCTTATTCCTACT+AGG 0.547965 6_1:+54508811 None:intergenic
GTTGTTGGATTTGACGCCGA+AGG 0.553373 6_1:-54508581 Msa0888940:CDS
TAATCCACAATCTTAGTTGG+AGG 0.553577 6_1:+54503461 None:intergenic
CGAACGGCGTTTGCCACCAA+CGG 0.555890 6_1:+54509128 None:intergenic
TAACAGGTCTTCCTCTCAGT+CGG 0.558034 6_1:+54503095 None:intergenic
AACAACTGCTCCGAATGCAC+CGG 0.558050 6_1:+54508598 None:intergenic
AATCCTTCATATTTCCAAGA+CGG 0.559891 6_1:+54505692 None:intergenic
GGTCTTCCTCTCAGTCGGAA+TGG 0.566394 6_1:+54503100 None:intergenic
AAAGGAAATGAAGCAGCAAA+CGG 0.568655 6_1:+54505580 None:intergenic
TCCAAACTCCTCAAAACCGC+CGG 0.568764 6_1:+54508691 None:intergenic
GAAGTGTGCAGAGTGATACC+GGG 0.570950 6_1:+54505540 None:intergenic
GCGTGGTGATGGGTCAGAGC+TGG 0.574501 6_1:-54504223 Msa0888940:CDS
CATTCTCATAGTCAAATCCT+GGG 0.575192 6_1:-54505745 Msa0888940:CDS
GAAGTAATTGAAACTGCGAT+CGG 0.582267 6_1:-54503022 Msa0888940:CDS
TTCCTGTGTTTGCACATGAA+AGG 0.585708 6_1:-54504071 Msa0888940:intron
AAGACTGGAACAAAGAAATG+TGG 0.586177 6_1:-54503127 Msa0888940:CDS
ATCATGAGAACCAAAACCGT+TGG 0.586660 6_1:-54509144 Msa0888940:CDS
ACAATGGCGGATTGAAGAAG+AGG 0.587218 6_1:-54503228 Msa0888940:CDS
GTTTGCGTTGGATGGTGGTG+AGG 0.587428 6_1:-54508662 Msa0888940:CDS
TCCTATAAATCAGATTGGCT+AGG 0.589536 6_1:+54502480 None:intergenic
CTCTTCGCCACTTAGCCGAC+CGG 0.590945 6_1:+54502988 None:intergenic
AGACTTTCTGGGATTTCACA+GGG 0.595594 6_1:+54502568 None:intergenic
TACCTTTCATGTGCAAACAC+AGG 0.597392 6_1:+54504069 None:intergenic
TGTTATTGACCAATGACCAA+AGG 0.599026 6_1:-54502448 Msa0888940:three_prime_UTR
TGGAAAATATAGACAATACA+AGG 0.599857 6_1:-54503164 Msa0888940:CDS
AAGCCGTGTGTGTATTGCAT+TGG 0.600783 6_1:-54508799 Msa0888940:CDS
GCGATCGGGAGCACATATGC+CGG 0.610976 6_1:-54503007 Msa0888940:CDS
ACCAGTGTTGAAAGAACGAA+TGG 0.618296 6_1:+54509087 None:intergenic
CTGTTAGAAATGGTGATGGA+TGG 0.620170 6_1:-54503078 Msa0888940:CDS
AAACCCGTGCTCTCTCCCAA+TGG 0.622311 6_1:+54503273 None:intergenic
AGACCTGTTAGAAATGGTGA+TGG 0.628565 6_1:-54503082 Msa0888940:CDS
GACGCCGAAGGATGTTGGCG+AGG 0.629659 6_1:-54508569 Msa0888940:CDS
TGATGCATTCACCACCAAAG+AGG 0.630981 6_1:-54503435 Msa0888940:intron
TGTTGAGAGTCCGAATCCGG+CGG 0.631477 6_1:-54508707 Msa0888940:CDS
GGCGGATTGAAGAAGAGGAT+AGG 0.632863 6_1:-54503223 Msa0888940:CDS
GCGGCTATTTGAATGGAGAA+GGG 0.635538 6_1:+54509287 None:intergenic
TCTGACCCATCACCACGCAA+TGG 0.638701 6_1:+54504228 None:intergenic
AGACTGGAACAAAGAAATGT+GGG 0.639374 6_1:-54503126 Msa0888940:CDS
GAAAGATAGATTCTTCCAGA+AGG 0.640993 6_1:+54502590 None:intergenic
AATTAGGGTTGATTAACGAA+CGG 0.647083 6_1:+54509112 None:intergenic
CCAGTTGTCGGAATCAGCTG+AGG 0.654012 6_1:+54504171 None:intergenic
TTCAGCAGATACTCTCGAGT+AGG 0.654168 6_1:+54503307 None:intergenic
GGGTGTCCATTCCGACTGAG+AGG 0.661322 6_1:-54503106 Msa0888940:CDS
ATCATTCAAAGATCAGACAA+TGG 0.661996 6_1:-54503244 Msa0888940:CDS
TGGAAAGTGAACGTAGTGTG+TGG 0.664110 6_1:-54503058 Msa0888940:CDS
TGCCCTAAGTCAGAGAGATG+CGG 0.668293 6_1:+54509268 None:intergenic
TGACCAATGCAATACACACA+CGG 0.674183 6_1:+54508796 None:intergenic
TCGGGAGCACATATGCCGGT+CGG 0.680903 6_1:-54503003 Msa0888940:CDS
TGAATCATAAAGTTGTATGG+CGG 0.697778 6_1:+54504258 None:intergenic
ATTCAAAGATCAGACAATGG+CGG 0.698505 6_1:-54503241 Msa0888940:CDS
GCTATTTGAATGGAGAAGGG+AGG 0.699762 6_1:+54509290 None:intergenic
TCATGAAGATGAATGTAGTG+AGG 0.706412 6_1:-54508776 Msa0888940:CDS
ATTCACACTAGTCCATTGCG+TGG 0.708834 6_1:-54504240 Msa0888940:CDS
AAGTGTGCAGAGTGATACCG+GGG 0.743726 6_1:+54505541 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAGAAAATTTGAATTTTT+AGG - chr6_1:54503242-54503261 Msa0888940:CDS 10.0%
!!! ATAGAAAATTTGAATTTTTA+GGG - chr6_1:54503243-54503262 Msa0888940:CDS 10.0%
!!! TTATGTTTAGAATAAAATAA+AGG - chr6_1:54504485-54504504 Msa0888940:intron 10.0%
!! TTGAAAAATTAAATAAGAAA+TGG - chr6_1:54506376-54506395 Msa0888940:intron 10.0%
!!! TCTGATTTTTTTTTTTTTTA+AGG - chr6_1:54508266-54508285 Msa0888940:intron 10.0%
!!! GTTTATAATTGTTGTTTTAT+AGG - chr6_1:54503265-54503284 Msa0888940:CDS 15.0%
!!! AAATAATTGAATTTTGTTGT+TGG - chr6_1:54504110-54504129 Msa0888940:CDS 15.0%
!! ATGTTATATATGTAAAGTAA+AGG + chr6_1:54505379-54505398 None:intergenic 15.0%
!!! TTATAATTGTTATTTGACTT+TGG - chr6_1:54505616-54505635 Msa0888940:CDS 15.0%
!!! TATAATTGTTATTTGACTTT+GGG - chr6_1:54505617-54505636 Msa0888940:CDS 15.0%
!! ATTTATATTTATACAGAACA+AGG + chr6_1:54505776-54505795 None:intergenic 15.0%
!!! TTGATTTTATTAATCTTTGA+AGG - chr6_1:54505860-54505879 Msa0888940:intron 15.0%
!! GAATATAGTTGTATTATATT+TGG - chr6_1:54506422-54506441 Msa0888940:intron 15.0%
!! AAATAAATGTCAAGATATAA+TGG + chr6_1:54507323-54507342 None:intergenic 15.0%
!! TTAATTTATCTATCATTACA+TGG - chr6_1:54507916-54507935 Msa0888940:intron 15.0%
!!! GTATTGTTAAATTTTTTTGA+AGG - chr6_1:54508167-54508186 Msa0888940:intron 15.0%
!!! TTGTTGTTTTATAGGAAAAT+TGG - chr6_1:54503273-54503292 Msa0888940:CDS 20.0%
!! GTGATAATAATTTCAGAAAA+TGG - chr6_1:54503882-54503901 Msa0888940:intron 20.0%
!!! ACTTAAAAGTAGTTTTTCAA+TGG - chr6_1:54504528-54504547 Msa0888940:intron 20.0%
!! ATTGTGAAAAATAAATCCTT+TGG - chr6_1:54504897-54504916 Msa0888940:intron 20.0%
!! TTGTGAAAAATAAATCCTTT+GGG - chr6_1:54504898-54504917 Msa0888940:intron 20.0%
!! AATTACATTATTGTAAGAAC+TGG + chr6_1:54505132-54505151 None:intergenic 20.0%
!!! GGTTTCTAAAATTTATGAAT+AGG + chr6_1:54505252-54505271 None:intergenic 20.0%
!! CACTGAATACAAATAAAAAA+GGG + chr6_1:54505354-54505373 None:intergenic 20.0%
!! ACACTGAATACAAATAAAAA+AGG + chr6_1:54505355-54505374 None:intergenic 20.0%
!!! TTTTGCATTTCAACATAAAT+AGG + chr6_1:54506200-54506219 None:intergenic 20.0%
!!! ATAGGACATAAATTTTGATT+AGG - chr6_1:54506462-54506481 Msa0888940:intron 20.0%
!! TTAGGAATTATAGTATAACA+CGG - chr6_1:54506480-54506499 Msa0888940:intron 20.0%
!! CTTTGAATGATAAATTGAAA+TGG + chr6_1:54506650-54506669 None:intergenic 20.0%
!!! TATTTATTCTCGTTTTTTCA+CGG + chr6_1:54506926-54506945 None:intergenic 20.0%
!! AAAAACGAGAATAAATATAG+TGG - chr6_1:54506929-54506948 Msa0888940:intron 20.0%
!!! ATATAGTGGAAGAAAATAAA+AGG - chr6_1:54506943-54506962 Msa0888940:intron 20.0%
!!! TATCTTGACATTTATTTTAC+AGG - chr6_1:54507326-54507345 Msa0888940:intron 20.0%
!! ATTTAGACATGTAATATTGT+CGG - chr6_1:54507861-54507880 Msa0888940:intron 20.0%
!! TTTAAATCCAGTAAAAATCT+GGG + chr6_1:54508003-54508022 None:intergenic 20.0%
!! ATTTAAATCCAGTAAAAATC+TGG + chr6_1:54508004-54508023 None:intergenic 20.0%
!! TTCTAGATTAGAATTAGAAA+TGG - chr6_1:54508835-54508854 Msa0888940:CDS 20.0%
!! AGAATTAGAAATGGAAAATT+CGG - chr6_1:54508844-54508863 Msa0888940:CDS 20.0%
!! TCATTATATGATGTTATCTT+AGG - chr6_1:54509277-54509296 Msa0888940:five_prime_UTR 20.0%
!!! TTTTTGTTGCTTTCAGTAAT+AGG - chr6_1:54503123-54503142 Msa0888940:CDS 25.0%
!! TTGTACATGTGATTTTTGTA+AGG - chr6_1:54504371-54504390 Msa0888940:intron 25.0%
! TGTGATAATTTCTTCTTTCA+GGG + chr6_1:54505109-54505128 None:intergenic 25.0%
! ATTTATGAATAGGTCCTAAT+TGG + chr6_1:54505242-54505261 None:intergenic 25.0%
!!! CATAAATTTTAGAAACCGAA+TGG - chr6_1:54505255-54505274 Msa0888940:intron 25.0%
! ACAAATAAAAAAGGGAATGA+AGG + chr6_1:54505346-54505365 None:intergenic 25.0%
!! GATAAGAACTTTTACAACAA+GGG + chr6_1:54505436-54505455 None:intergenic 25.0%
!! AGATAAGAACTTTTACAACA+AGG + chr6_1:54505437-54505456 None:intergenic 25.0%
! TAAGCTATGATTTATGATCT+AGG - chr6_1:54505589-54505608 Msa0888940:CDS 25.0%
! AATGACAAATTACATGAAAC+AGG + chr6_1:54505833-54505852 None:intergenic 25.0%
!!! AAGGATTTTTTTTATCAGAC+AGG - chr6_1:54505993-54506012 Msa0888940:intron 25.0%
!!! AGGATTTTTTTTATCAGACA+GGG - chr6_1:54505994-54506013 Msa0888940:intron 25.0%
!!! TTCATTTCCTTTTGAGATAT+GGG - chr6_1:54506100-54506119 Msa0888940:intron 25.0%
!! ACTATGCTAGATCTTTTATA+AGG - chr6_1:54506320-54506339 Msa0888940:intron 25.0%
!! CTATGCTAGATCTTTTATAA+GGG - chr6_1:54506321-54506340 Msa0888940:intron 25.0%
! TGTTATTCAGTTACATTTGA+AGG + chr6_1:54506532-54506551 None:intergenic 25.0%
! CATAGTTTCGAGAAAAAAAT+AGG + chr6_1:54506714-54506733 None:intergenic 25.0%
! ATCAGAAATATGTGAATGTT+AGG - chr6_1:54506758-54506777 Msa0888940:intron 25.0%
! TCAGAAATATGTGAATGTTA+GGG - chr6_1:54506759-54506778 Msa0888940:intron 25.0%
!!! TAAAAGCATCATAAAACTTC+TGG - chr6_1:54506874-54506893 Msa0888940:intron 25.0%
!! TTCACGGATTAATAAACATA+GGG + chr6_1:54506910-54506929 None:intergenic 25.0%
!! TTTCACGGATTAATAAACAT+AGG + chr6_1:54506911-54506930 None:intergenic 25.0%
! TCATAATTCCAATGTCTATT+AGG + chr6_1:54507142-54507161 None:intergenic 25.0%
! TAATAGACATTGGAATTATG+AGG - chr6_1:54507141-54507160 Msa0888940:intron 25.0%
! TTACCAACTATATATACATG+TGG - chr6_1:54507258-54507277 Msa0888940:intron 25.0%
! TTACCACATGTATATATAGT+TGG + chr6_1:54507264-54507283 None:intergenic 25.0%
!! TGAAAGGTATGAAATTTACT+CGG - chr6_1:54507614-54507633 Msa0888940:intron 25.0%
! TTAGCATCTTGATTGAAATA+TGG - chr6_1:54507825-54507844 Msa0888940:intron 25.0%
! AGTATATGAATAACGTGAAA+AGG + chr6_1:54507892-54507911 None:intergenic 25.0%
!! CATAACACTTGATAAACTTT+TGG + chr6_1:54508028-54508047 None:intergenic 25.0%
! CAAAAGTTTATCAAGTGTTA+TGG - chr6_1:54508026-54508045 Msa0888940:intron 25.0%
!!! TCTCTTTAAGTTTTGAGATT+TGG - chr6_1:54508079-54508098 Msa0888940:intron 25.0%
!!! GTTTCTGAGAGTTTATTTTA+AGG - chr6_1:54508140-54508159 Msa0888940:intron 25.0%
! TGGAAAATATAGACAATACA+AGG - chr6_1:54508505-54508524 Msa0888940:CDS 25.0%
! AATGTCTGTAATATGTCTTT+CGG + chr6_1:54508746-54508765 None:intergenic 25.0%
!!! TACTTTCCATTTTTTTGCAA+TGG - chr6_1:54508938-54508957 Msa0888940:CDS 25.0%
!! AAAGTACCATTGCAAAAAAA+TGG + chr6_1:54508947-54508966 None:intergenic 25.0%
TTCTCATGATTGCGAAAAAT+TGG + chr6_1:54502515-54502534 None:intergenic 30.0%
! AATTAGGGTTGATTAACGAA+CGG + chr6_1:54502560-54502579 None:intergenic 30.0%
AAAGAACGAATGGTGAATTA+GGG + chr6_1:54502575-54502594 None:intergenic 30.0%
GGTTAATGAAAACGATGAAT+GGG + chr6_1:54502629-54502648 None:intergenic 30.0%
CAAAAAAGGGGTGAAAATTA+GGG + chr6_1:54502703-54502722 None:intergenic 30.0%
! GATTTTCGGTAAATTGGATT+TGG + chr6_1:54502750-54502769 None:intergenic 30.0%
TCCAATTTACCGAAAATCAA+CGG - chr6_1:54502752-54502771 Msa0888940:three_prime_UTR 30.0%
AGATAAAACGAAGAAAGCTT+CGG - chr6_1:54502803-54502822 Msa0888940:exon 30.0%
! AATGTAGTGAGGAGATTTTT+AGG - chr6_1:54502904-54502923 Msa0888940:CDS 30.0%
! ATGTAGTGAGGAGATTTTTA+GGG - chr6_1:54502905-54502924 Msa0888940:CDS 30.0%
TGAGTCTATCAAATATGTTC+AGG - chr6_1:54503166-54503185 Msa0888940:CDS 30.0%
!!! ATGTTCAGGTTTGTTTTTTG+TGG - chr6_1:54503180-54503199 Msa0888940:CDS 30.0%
AATGAAAGTGAATGTGATAC+TGG - chr6_1:54503308-54503327 Msa0888940:CDS 30.0%
! TTTTTATCTGACCAGAGAAT+AGG - chr6_1:54503462-54503481 Msa0888940:CDS 30.0%
AGAGTATGAAATTGTGTAGT+TGG - chr6_1:54503492-54503511 Msa0888940:intron 30.0%
ATTCAAACCAGATACATTGT+CGG + chr6_1:54503626-54503645 None:intergenic 30.0%
!!! CTATCTGTTTTGAAATTGTG+TGG - chr6_1:54503657-54503676 Msa0888940:intron 30.0%
ATTCAAACCAGATACATTGT+CGG + chr6_1:54503626-54503645 None:intergenic 30.0%
!!! CTATCTGTTTTGAAATTGTG+TGG - chr6_1:54503657-54503676 Msa0888940:intron 30.0%
TTATCTTCATCTATGAAGCA+CGG - chr6_1:54503817-54503836 Msa0888940:intron 30.0%
! TATATGTGTAAGTGTTGTGT+CGG - chr6_1:54503922-54503941 Msa0888940:intron 30.0%
TATCTGGACATGACTTTAAT+TGG - chr6_1:54503964-54503983 Msa0888940:intron 30.0%
!! ACTTTAATTGGAAGTGTCAA+TGG - chr6_1:54503976-54503995 Msa0888940:intron 30.0%
! ACGTTTTTGATAGACTCAAA+AGG + chr6_1:54504068-54504087 None:intergenic 30.0%
GAGTCTATCAAAAACGTTTA+AGG - chr6_1:54504071-54504090 Msa0888940:intron 30.0%
CAAGGTGGACAAAATAATAA+TGG + chr6_1:54504337-54504356 None:intergenic 30.0%
! TGATCATTTTGCATTCTCAA+AGG - chr6_1:54504421-54504440 Msa0888940:intron 30.0%
! TGAGATTTTTCTCTCTTGTT+TGG - chr6_1:54504579-54504598 Msa0888940:intron 30.0%
ACAATGCACACAATTGATAA+TGG - chr6_1:54504708-54504727 Msa0888940:intron 30.0%
TGTAAAGATATGTTCCTTAG+TGG - chr6_1:54504855-54504874 Msa0888940:intron 30.0%
GTAAAGATATGTTCCTTAGT+GGG - chr6_1:54504856-54504875 Msa0888940:intron 30.0%
TAGTTAATCTTGTTCGAGAT+GGG + chr6_1:54504947-54504966 None:intergenic 30.0%
ATAGTTAATCTTGTTCGAGA+TGG + chr6_1:54504948-54504967 None:intergenic 30.0%
ATCTCGAACAAGATTAACTA+TGG - chr6_1:54504947-54504966 Msa0888940:intron 30.0%
AACAAGATTAACTATGGTAG+AGG - chr6_1:54504953-54504972 Msa0888940:intron 30.0%
AAGTAAGCCTTCAATATAAG+TGG - chr6_1:54505068-54505087 Msa0888940:intron 30.0%
AGTAAGCCTTCAATATAAGT+GGG - chr6_1:54505069-54505088 Msa0888940:intron 30.0%
GTGTGATAATTTCTTCTTTC+AGG + chr6_1:54505110-54505129 None:intergenic 30.0%
ATTAAGAAAATAAGTCCCAG+AGG + chr6_1:54505171-54505190 None:intergenic 30.0%
AATATGCATGTTTGCCAATT+AGG - chr6_1:54505225-54505244 Msa0888940:intron 30.0%
AGTAATACTCATTGACCATT+CGG + chr6_1:54505273-54505292 None:intergenic 30.0%
ACTGAGAGGTTTACATATTA+CGG + chr6_1:54505306-54505325 None:intergenic 30.0%
! TATGTGAGCTTGAATCTTTT+TGG - chr6_1:54505468-54505487 Msa0888940:intron 30.0%
GACACTTCTAATATGAAAGT+AGG - chr6_1:54505521-54505540 Msa0888940:CDS 30.0%
!! TTGAAGGTGTTTAAAAACCA+TGG - chr6_1:54505876-54505895 Msa0888940:intron 30.0%
! GAAACATTGTTTGGAACAAT+TGG + chr6_1:54505954-54505973 None:intergenic 30.0%
AATCCTTCATATTTCCAAGA+CGG + chr6_1:54505980-54505999 None:intergenic 30.0%
TATTTGTGACATTCAACTTG+AGG - chr6_1:54506025-54506044 Msa0888940:intron 30.0%
! ATCTTCCTACTTCTTTTCAT+TGG - chr6_1:54506064-54506083 Msa0888940:intron 30.0%
!!! CTTCATTTCCTTTTGAGATA+TGG - chr6_1:54506099-54506118 Msa0888940:intron 30.0%
TCGTATCACACATGATTTAA+AGG - chr6_1:54506250-54506269 Msa0888940:intron 30.0%
ATGAAATAATTCAGCAGTCT+AGG - chr6_1:54506731-54506750 Msa0888940:intron 30.0%
CAGAAATATGTGAATGTTAG+GGG - chr6_1:54506760-54506779 Msa0888940:intron 30.0%
AGAAATATGTGAATGTTAGG+GGG - chr6_1:54506761-54506780 Msa0888940:intron 30.0%
TTTAGACAATAACCTCCAAA+CGG + chr6_1:54507293-54507312 None:intergenic 30.0%
TTTGGAGGTTATTGTCTAAA+AGG - chr6_1:54507293-54507312 Msa0888940:intron 30.0%
! AAAAGACATCTTTCTAAGAG+TGG + chr6_1:54507379-54507398 None:intergenic 30.0%
TGAATCATAAAGTTGTATGG+CGG + chr6_1:54507414-54507433 None:intergenic 30.0%
GTGTGAATCATAAAGTTGTA+TGG + chr6_1:54507417-54507436 None:intergenic 30.0%
!! TTATTTGGTGTCAAGAACTT+AGG + chr6_1:54507766-54507785 None:intergenic 30.0%
CTTGACACCAAATAATCAAA+TGG - chr6_1:54507771-54507790 Msa0888940:intron 30.0%
ACAGCAACCATTTGATTATT+TGG + chr6_1:54507781-54507800 None:intergenic 30.0%
! CTTGATTGAAATATGGACTA+TGG - chr6_1:54507832-54507851 Msa0888940:intron 30.0%
ATATGAATAACGTGAAAAGG+AGG + chr6_1:54507889-54507908 None:intergenic 30.0%
TTTATCAAGTGTTATGGCAT+TGG - chr6_1:54508032-54508051 Msa0888940:intron 30.0%
! TGGCATTGGAATTTAAATTC+TGG - chr6_1:54508046-54508065 Msa0888940:intron 30.0%
! GGCATTGGAATTTAAATTCT+GGG - chr6_1:54508047-54508066 Msa0888940:intron 30.0%
!!! AAGTTTTGAGATTTGGTTTG+TGG - chr6_1:54508086-54508105 Msa0888940:intron 30.0%
!!! TCTGAGAGTTTATTTTAAGG+TGG - chr6_1:54508143-54508162 Msa0888940:intron 30.0%
!!! TAAATTTTTTTGAAGGCGCA+TGG - chr6_1:54508174-54508193 Msa0888940:intron 30.0%
CTATAATCCACAATCTTAGT+TGG + chr6_1:54508214-54508233 None:intergenic 30.0%
TCAGAATTCAATTACCTCTT+TGG + chr6_1:54508251-54508270 None:intergenic 30.0%
ATCATTCAAAGATCAGACAA+TGG - chr6_1:54508425-54508444 Msa0888940:intron 30.0%
! AAGGAAAACAACTGTGATTT+TGG - chr6_1:54508469-54508488 Msa0888940:intron 30.0%
! AGGAAAACAACTGTGATTTT+GGG - chr6_1:54508470-54508489 Msa0888940:intron 30.0%
AATTCGGCATAGATTAAAAG+TGG - chr6_1:54508860-54508879 Msa0888940:CDS 30.0%
TAGATTAAAAGTGGAACATC+TGG - chr6_1:54508869-54508888 Msa0888940:CDS 30.0%
AGCACAGTCAATTAAAACTA+AGG + chr6_1:54508901-54508920 None:intergenic 30.0%
AAGCTTCCTATAAATCAGAT+TGG + chr6_1:54509197-54509216 None:intergenic 30.0%
ACTTGTACAAATCTAACCTT+TGG + chr6_1:54509240-54509259 None:intergenic 30.0%
TACAAGTGCTTAATGTACTT+TGG - chr6_1:54509253-54509272 Msa0888940:five_prime_UTR 30.0%
ACAAGTGCTTAATGTACTTT+GGG - chr6_1:54509254-54509273 Msa0888940:five_prime_UTR 30.0%
!! AAGTGTTTGCTGAAAGTGTT+TGG + chr6_1:54502433-54502452 None:intergenic 35.0%
GAAAGAACGAATGGTGAATT+AGG + chr6_1:54502576-54502595 None:intergenic 35.0%
GGGTTAATGAAAACGATGAA+TGG + chr6_1:54502630-54502649 None:intergenic 35.0%
GCAAAAAAGGGGTGAAAATT+AGG + chr6_1:54502704-54502723 None:intergenic 35.0%
!! AATTTTCACCCCTTTTTTGC+AGG - chr6_1:54502704-54502723 Msa0888940:three_prime_UTR 35.0%
ATTTGGATCTTCTTCCTCAT+CGG + chr6_1:54502733-54502752 None:intergenic 35.0%
!!! ACCGTTGATTTTCGGTAAAT+TGG + chr6_1:54502756-54502775 None:intergenic 35.0%
TTTACCGAAAATCAACGGTT+TGG - chr6_1:54502757-54502776 Msa0888940:three_prime_UTR 35.0%
!!! CATTCCAAACCGTTGATTTT+CGG + chr6_1:54502764-54502783 None:intergenic 35.0%
! AATCAACGGTTTGGAATGAA+TGG - chr6_1:54502766-54502785 Msa0888940:three_prime_UTR 35.0%
! ATCAACGGTTTGGAATGAAT+GGG - chr6_1:54502767-54502786 Msa0888940:three_prime_UTR 35.0%
AAGAAAGCTTCGGACTTTAA+GGG - chr6_1:54502813-54502832 Msa0888940:exon 35.0%
CGTATAATACGAATCCTAGT+AGG - chr6_1:54502844-54502863 Msa0888940:CDS 35.0%
TCATGAAGATGAATGTAGTG+AGG - chr6_1:54502893-54502912 Msa0888940:CDS 35.0%
TTCCAATTCGGTTCATCAAA+CGG + chr6_1:54502933-54502952 None:intergenic 35.0%
ATGAACCGAATTGGAAGATT+AGG - chr6_1:54502937-54502956 Msa0888940:CDS 35.0%
TGAACCGAATTGGAAGATTA+GGG - chr6_1:54502938-54502957 Msa0888940:CDS 35.0%
ACAACCCTAATCTTCCAATT+CGG + chr6_1:54502945-54502964 None:intergenic 35.0%
CAGTAATAGGATCAGAGAAT+TGG - chr6_1:54503136-54503155 Msa0888940:CDS 35.0%
TCAGTTGTTAGTATTGTGTC+TGG + chr6_1:54503357-54503376 None:intergenic 35.0%
! ATGAAATTGTGTAGTTGGTG+TGG - chr6_1:54503497-54503516 Msa0888940:intron 35.0%
!!! CTGTTTTGAAATTGTGTGGT+TGG - chr6_1:54503661-54503680 Msa0888940:intron 35.0%
!!! TTTTGAAATTGTGTGGTTGG+TGG - chr6_1:54503664-54503683 Msa0888940:intron 35.0%
! TTTGAAATTGTGTGGTTGGT+GGG - chr6_1:54503665-54503684 Msa0888940:intron 35.0%
!!! CTGTTTTGAAATTGTGTGGT+TGG - chr6_1:54503661-54503680 Msa0888940:intron 35.0%
GCACTTGATAAATAAACCCT+AGG - chr6_1:54504009-54504028 Msa0888940:intron 35.0%
CTTGATAGATAAACCCTGTT+AGG - chr6_1:54504236-54504255 Msa0888940:CDS 35.0%
ATAGATAAACCCTGTTAGGT+TGG - chr6_1:54504240-54504259 Msa0888940:CDS 35.0%
AATGGTAGACATCAATCCTA+AGG + chr6_1:54504319-54504338 None:intergenic 35.0%
! TATTTTGTCCACCTTGAACA+AGG - chr6_1:54504341-54504360 Msa0888940:intron 35.0%
TTTCAATGGAGAATAGCCAT+AGG - chr6_1:54504542-54504561 Msa0888940:intron 35.0%
GATATTAGTCCTTGTTCACT+TGG - chr6_1:54504603-54504622 Msa0888940:intron 35.0%
!! CACAATTGATAATGGATGTG+TGG - chr6_1:54504716-54504735 Msa0888940:intron 35.0%
!! TAATGGATGTGTGGTCATTT+TGG - chr6_1:54504725-54504744 Msa0888940:intron 35.0%
!!! ATGTGTGGTCATTTTGGAAT+AGG - chr6_1:54504731-54504750 Msa0888940:intron 35.0%
!! GTAGTCGAACTTTTTCTAGT+TGG - chr6_1:54504766-54504785 Msa0888940:intron 35.0%
AAGATTAACTATGGTAGAGG+AGG - chr6_1:54504956-54504975 Msa0888940:intron 35.0%
ATCACACAAACACTATGCAT+CGG + chr6_1:54505013-54505032 None:intergenic 35.0%
GTAAGCCTTCAATATAAGTG+GGG - chr6_1:54505070-54505089 Msa0888940:intron 35.0%
TAAGCCTTCAATATAAGTGG+GGG - chr6_1:54505071-54505090 Msa0888940:intron 35.0%
ATAACCCCCACTTATATTGA+AGG + chr6_1:54505078-54505097 None:intergenic 35.0%
TGTTAGTTAAGTAAAGCCTC+TGG - chr6_1:54505152-54505171 Msa0888940:intron 35.0%
GTTAGTTAAGTAAAGCCTCT+GGG - chr6_1:54505153-54505172 Msa0888940:intron 35.0%
CAAGGGACACAAAATTTACA+AGG + chr6_1:54505419-54505438 None:intergenic 35.0%
!!! GAATCTTTTTGGCTGCTTTA+CGG - chr6_1:54505479-54505498 Msa0888940:intron 35.0%
AAAAACCATGGTGAAAAAGC+TGG - chr6_1:54505888-54505907 Msa0888940:intron 35.0%
TCATTCTCATAGTCAAATCC+TGG - chr6_1:54505923-54505942 Msa0888940:intron 35.0%
CATTCTCATAGTCAAATCCT+GGG - chr6_1:54505924-54505943 Msa0888940:intron 35.0%
ATCCTTCATATTTCCAAGAC+GGG + chr6_1:54505979-54505998 None:intergenic 35.0%
AAAGGAAATGAAGCAGCAAA+CGG + chr6_1:54506092-54506111 None:intergenic 35.0%
CCATTTCATCATCCAATTCA+TGG + chr6_1:54506154-54506173 None:intergenic 35.0%
CCATGAATTGGATGATGAAA+TGG - chr6_1:54506151-54506170 Msa0888940:intron 35.0%
GAAATGGTGTTTGAATGTCA+TGG - chr6_1:54506392-54506411 Msa0888940:intron 35.0%
!! ATTTGGTGCCTTAATCATAC+AGG - chr6_1:54506439-54506458 Msa0888940:intron 35.0%
TGTCCTATCCTGTATGATTA+AGG + chr6_1:54506450-54506469 None:intergenic 35.0%
AACACAACATAACACAATCC+AGG + chr6_1:54506589-54506608 None:intergenic 35.0%
! CAAGACTGTGATGCATTTTA+TGG + chr6_1:54506683-54506702 None:intergenic 35.0%
AGCATCATAAAACTTCTGGT+TGG - chr6_1:54506878-54506897 Msa0888940:intron 35.0%
! GCATCATAAAACTTCTGGTT+GGG - chr6_1:54506879-54506898 Msa0888940:intron 35.0%
TGCATAAAAACTCTGAGCTA+TGG - chr6_1:54507026-54507045 Msa0888940:intron 35.0%
ACATGGCAATAATTAGCAAG+AGG - chr6_1:54507082-54507101 Msa0888940:intron 35.0%
! ATTTAGGGCCTAATAGACAT+TGG - chr6_1:54507131-54507150 Msa0888940:intron 35.0%
! TTGAGCTATAGACACAGTTT+TGG - chr6_1:54507212-54507231 Msa0888940:intron 35.0%
ATGTGGTAATTTCTTCCGTT+TGG - chr6_1:54507275-54507294 Msa0888940:intron 35.0%
! ATTTTACAGGCACTTGATCT+TGG - chr6_1:54507339-54507358 Msa0888940:intron 35.0%
! CAGCAGACAAGTTTGAAATT+AGG + chr6_1:54507643-54507662 None:intergenic 35.0%
CTCTCAAATGCACCTAAATA+GGG + chr6_1:54507733-54507752 None:intergenic 35.0%
TCTCTCAAATGCACCTAAAT+AGG + chr6_1:54507734-54507753 None:intergenic 35.0%
TTTACCTCCAACTAAGATTG+TGG - chr6_1:54508204-54508223 Msa0888940:intron 35.0%
TAATCCACAATCTTAGTTGG+AGG + chr6_1:54508211-54508230 None:intergenic 35.0%
GAATTCAATTACCTCTTTGG+TGG + chr6_1:54508248-54508267 None:intergenic 35.0%
ATTCAAAGATCAGACAATGG+CGG - chr6_1:54508428-54508447 Msa0888940:intron 35.0%
AAGACTGGAACAAAGAAATG+TGG - chr6_1:54508542-54508561 Msa0888940:CDS 35.0%
AGACTGGAACAAAGAAATGT+GGG - chr6_1:54508543-54508562 Msa0888940:CDS 35.0%
TCGCAGTTTCAATTACTTCA+TGG + chr6_1:54508646-54508665 None:intergenic 35.0%
GAAGTAATTGAAACTGCGAT+CGG - chr6_1:54508647-54508666 Msa0888940:CDS 35.0%
AAGTAATTGAAACTGCGATC+GGG - chr6_1:54508648-54508667 Msa0888940:CDS 35.0%
!!! ATCTAGAACGTTTTAGCTGT+TGG + chr6_1:54508823-54508842 None:intergenic 35.0%
ATTCTTCCAGAAGGAGATTT+GGG + chr6_1:54509073-54509092 None:intergenic 35.0%
GAAAGATAGATTCTTCCAGA+AGG + chr6_1:54509082-54509101 None:intergenic 35.0%
TTGAGCAAATGAGACTTTCT+GGG + chr6_1:54509115-54509134 None:intergenic 35.0%
TTTGAGCAAATGAGACTTTC+TGG + chr6_1:54509116-54509135 None:intergenic 35.0%
TTTGCTCAAACCTATGAGTA+CGG - chr6_1:54509126-54509145 Msa0888940:CDS 35.0%
TCCTAGCCAATCTGATTTAT+AGG - chr6_1:54509188-54509207 Msa0888940:five_prime_UTR 35.0%
! TCCTATAAATCAGATTGGCT+AGG + chr6_1:54509192-54509211 None:intergenic 35.0%
TGTTATTGACCAATGACCAA+AGG - chr6_1:54509221-54509240 Msa0888940:five_prime_UTR 35.0%
CAAATCTAACCTTTGGTCAT+TGG + chr6_1:54509233-54509252 None:intergenic 35.0%
ATCATGAGAACCAAAACCGT+TGG - chr6_1:54502525-54502544 Msa0888940:three_prime_UTR 40.0%
ACCATTCGTTCTTTCAACAC+TGG - chr6_1:54502581-54502600 Msa0888940:three_prime_UTR 40.0%
! ACCAGTGTTGAAAGAACGAA+TGG + chr6_1:54502585-54502604 None:intergenic 40.0%
AGGGGTGAAAATTAGGGTTA+GGG + chr6_1:54502697-54502716 None:intergenic 40.0%
AAGGGGTGAAAATTAGGGTT+AGG + chr6_1:54502698-54502717 None:intergenic 40.0%
! ATCGGTTTCCTGCAAAAAAG+GGG + chr6_1:54502715-54502734 None:intergenic 40.0%
!! CATCGGTTTCCTGCAAAAAA+GGG + chr6_1:54502716-54502735 None:intergenic 40.0%
!! TCATCGGTTTCCTGCAAAAA+AGG + chr6_1:54502717-54502736 None:intergenic 40.0%
!!! TTTTTTGCAGGAAACCGATG+AGG - chr6_1:54502716-54502735 Msa0888940:three_prime_UTR 40.0%
GAAGAAAGCTTCGGACTTTA+AGG - chr6_1:54502812-54502831 Msa0888940:exon 40.0%
TGACCAATGCAATACACACA+CGG + chr6_1:54502876-54502895 None:intergenic 40.0%
TTCCGTTTGATGAACCGAAT+TGG - chr6_1:54502928-54502947 Msa0888940:CDS 40.0%
!!! GTTTTGAGGAGTTTGGATGA+CGG - chr6_1:54502984-54503003 Msa0888940:CDS 40.0%
!! TTTTGAGGAGTTTGGATGAC+GGG - chr6_1:54502985-54503004 Msa0888940:CDS 40.0%
TGATGTTGTCATTGAGAGTC+CGG - chr6_1:54503052-54503071 Msa0888940:CDS 40.0%
GTTAGTATTGTGTCTGGTGT+CGG + chr6_1:54503351-54503370 None:intergenic 40.0%
CAGATACATTGTCAATGTCG+CGG + chr6_1:54503380-54503399 None:intergenic 40.0%
CTCTCAAATCACCTATTCTC+TGG + chr6_1:54503476-54503495 None:intergenic 40.0%
! TTGAAATTGTGTGGTTGGTG+GGG - chr6_1:54503666-54503685 Msa0888940:intron 40.0%
! TTGAAATTGTGTGGTTGGTG+TGG - chr6_1:54503666-54503685 Msa0888940:intron 40.0%
! CGGATCTAATCTGAAGTATC+TGG - chr6_1:54503948-54503967 Msa0888940:intron 40.0%
TCTGTTGCTCAAACAACCTA+GGG + chr6_1:54504028-54504047 None:intergenic 40.0%
TTCTGTTGCTCAAACAACCT+AGG + chr6_1:54504029-54504048 None:intergenic 40.0%
TATATGTGTCAGTGTCGTGT+TGG - chr6_1:54504144-54504163 Msa0888940:CDS 40.0%
AGCATGTTGGATATGCAAGT+AGG - chr6_1:54504272-54504291 Msa0888940:CDS 40.0%
ATGCAAGTAGGAAGAATGTG+CGG - chr6_1:54504284-54504303 Msa0888940:CDS 40.0%
CACTACTCTCACATTACCTA+TGG + chr6_1:54504561-54504580 None:intergenic 40.0%
TGGCTTAGTGGAACTATTCT+AGG - chr6_1:54504638-54504657 Msa0888940:intron 40.0%
AAGATATGTTCCTTAGTGGG+AGG - chr6_1:54504859-54504878 Msa0888940:intron 40.0%
AAACCAAATACCTCCCACTA+AGG + chr6_1:54504872-54504891 None:intergenic 40.0%
TATGGTAGAGGAGGATGTAT+AGG - chr6_1:54504965-54504984 Msa0888940:intron 40.0%
ATGGTAGAGGAGGATGTATA+GGG - chr6_1:54504966-54504985 Msa0888940:intron 40.0%
AGGATGTATAGGGATACAAG+TGG - chr6_1:54504976-54504995 Msa0888940:intron 40.0%
TCACACAAACACTATGCATC+GGG + chr6_1:54505012-54505031 None:intergenic 40.0%
CTTTACGGCTGTGTTTGTAT+GGG - chr6_1:54505494-54505513 Msa0888940:intron 40.0%
TTTACGGCTGTGTTTGTATG+GGG - chr6_1:54505495-54505514 Msa0888940:intron 40.0%
ATACAGAACAAGGCAAGACT+AGG + chr6_1:54505766-54505785 None:intergenic 40.0%
TTATGACGGTTGTCTTCTTC+TGG - chr6_1:54505805-54505824 Msa0888940:intron 40.0%
CGGAACCAATGAAAAGAAGT+AGG + chr6_1:54506072-54506091 None:intergenic 40.0%
GGAACAACCCATATCTCAAA+AGG + chr6_1:54506110-54506129 None:intergenic 40.0%
GTGCCTTAATCATACAGGAT+AGG - chr6_1:54506444-54506463 Msa0888940:intron 40.0%
GGCACATGACAATTAGAACT+TGG + chr6_1:54506511-54506530 None:intergenic 40.0%
AATCCAGGTTTACCACACAA+AGG + chr6_1:54506574-54506593 None:intergenic 40.0%
ACAGATGCAACAGCTGAATT+TGG - chr6_1:54506970-54506989 Msa0888940:intron 40.0%
! GTTTTTATGCAGTTCCAGTC+AGG + chr6_1:54507017-54507036 None:intergenic 40.0%
TAACAGGTGAACTCAGAACA+TGG - chr6_1:54507065-54507084 Msa0888940:intron 40.0%
CTGTATGCGATGGACATTTA+GGG - chr6_1:54507116-54507135 Msa0888940:intron 40.0%
TGGTAATTTCTTCCGTTTGG+AGG - chr6_1:54507278-54507297 Msa0888940:intron 40.0%
TTCCTGTGTTTGCACATGAA+AGG - chr6_1:54507598-54507617 Msa0888940:intron 40.0%
TACCTTTCATGTGCAAACAC+AGG + chr6_1:54507603-54507622 None:intergenic 40.0%
GTGAGACTAAGTCCCTATTT+AGG - chr6_1:54507718-54507737 Msa0888940:intron 40.0%
CATTACATGGATACGAGAAG+AGG - chr6_1:54507929-54507948 Msa0888940:intron 40.0%
!! TTGGTAGCCCAGATTTTTAC+TGG - chr6_1:54507993-54508012 Msa0888940:intron 40.0%
!!! ATTTTTTTGAAGGCGCATGG+TGG - chr6_1:54508177-54508196 Msa0888940:intron 40.0%
!!! TTTTTTTGAAGGCGCATGGT+GGG - chr6_1:54508178-54508197 Msa0888940:intron 40.0%
!! TCGAGAGTATCTGCTGAATT+GGG - chr6_1:54508367-54508386 Msa0888940:intron 40.0%
GATTGAAGAAGAGGATAGGA+AGG - chr6_1:54508450-54508469 Msa0888940:intron 40.0%
!!! ATTTTGGGTTGCGAAAGAAG+TGG - chr6_1:54508485-54508504 Msa0888940:intron 40.0%
AGAGGAAGACCTGTTAGAAA+TGG - chr6_1:54508581-54508600 Msa0888940:CDS 40.0%
AGACCTGTTAGAAATGGTGA+TGG - chr6_1:54508587-54508606 Msa0888940:CDS 40.0%
CATCCATCACCATTTCTAAC+AGG + chr6_1:54508593-54508612 None:intergenic 40.0%
!! CTGTTAGAAATGGTGATGGA+TGG - chr6_1:54508591-54508610 Msa0888940:CDS 40.0%
GATTCTTCCAGAAGGAGATT+TGG + chr6_1:54509074-54509093 None:intergenic 40.0%
!! AGACTTTCTGGGATTTCACA+GGG + chr6_1:54509104-54509123 None:intergenic 40.0%
AGTGTTACAACCGTACTCAT+AGG + chr6_1:54509139-54509158 None:intergenic 40.0%
GCTATTTGAATGGAGAAGGG+AGG + chr6_1:54502382-54502401 None:intergenic 45.0%
GCGGCTATTTGAATGGAGAA+GGG + chr6_1:54502385-54502404 None:intergenic 45.0%
TGCGGCTATTTGAATGGAGA+AGG + chr6_1:54502386-54502405 None:intergenic 45.0%
GAGAGATGCGGCTATTTGAA+TGG + chr6_1:54502392-54502411 None:intergenic 45.0%
ATGAGAACCAAAACCGTTGG+TGG - chr6_1:54502528-54502547 Msa0888940:three_prime_UTR 45.0%
!!! GAATGGGAGTGTCGTTTTGA+AGG + chr6_1:54502613-54502632 None:intergenic 45.0%
ACACACGGCTTATTCCTACT+AGG + chr6_1:54502861-54502880 None:intergenic 45.0%
AAGCCGTGTGTGTATTGCAT+TGG - chr6_1:54502870-54502889 Msa0888940:CDS 45.0%
!!! ATGGTGGTGAGGTTTTGGAT+GGG - chr6_1:54503018-54503037 Msa0888940:CDS 45.0%
!!! GTGAGGTTTTGGATGGGTTT+GGG - chr6_1:54503024-54503043 Msa0888940:CDS 45.0%
AAAACCTCGCCAACATCCTT+CGG + chr6_1:54503107-54503126 None:intergenic 45.0%
TAATATCACCCCATCGTGTC+TGG + chr6_1:54503555-54503574 None:intergenic 45.0%
ATCAGTATCGTGTCTGGTGT+CGG + chr6_1:54503596-54503615 None:intergenic 45.0%
GTCACTATCAGTATCGTGTC+TGG + chr6_1:54503602-54503621 None:intergenic 45.0%
AGTGACACCGACAATGTATC+TGG - chr6_1:54503616-54503635 Msa0888940:intron 45.0%
GTCACTATCAGTATCGTGTC+TGG + chr6_1:54503602-54503621 None:intergenic 45.0%
AGTGACACCGACAATGTATC+TGG - chr6_1:54503616-54503635 Msa0888940:intron 45.0%
TGCGACACTGACAATGTAGA+TGG - chr6_1:54503860-54503879 Msa0888940:intron 45.0%
! TGTAAGTGTTGTGTCGGTGT+CGG - chr6_1:54503928-54503947 Msa0888940:intron 45.0%
! TCAGTGTCGTGTTGGTGTTT+GGG - chr6_1:54504152-54504171 Msa0888940:CDS 45.0%
TCCACTCTACCAACCTAACA+GGG + chr6_1:54504252-54504271 None:intergenic 45.0%
TTCCACTCTACCAACCTAAC+AGG + chr6_1:54504253-54504272 None:intergenic 45.0%
! TTGGTAGAGTGGAAGCATGT+TGG - chr6_1:54504259-54504278 Msa0888940:CDS 45.0%
TTGTCCACCTTGAACAAGGT+TGG - chr6_1:54504345-54504364 Msa0888940:intron 45.0%
ACAAGAGCCAACCTTGTTCA+AGG + chr6_1:54504355-54504374 None:intergenic 45.0%
CATTGCATGCCAAGTGAACA+AGG + chr6_1:54504615-54504634 None:intergenic 45.0%
TGTTCACTTGGCATGCAATG+AGG - chr6_1:54504615-54504634 Msa0888940:intron 45.0%
GCTTCTTTGTTGCTGCCTTA+AGG - chr6_1:54504681-54504700 Msa0888940:intron 45.0%
GTGTGCATTGTTCGTCCTTA+AGG + chr6_1:54504699-54504718 None:intergenic 45.0%
TCCTTAAGCACTCAGCAACA+AGG - chr6_1:54504796-54504815 Msa0888940:intron 45.0%
ACCTTGTTGCTGAGTGCTTA+AGG + chr6_1:54504800-54504819 None:intergenic 45.0%
TAAGCACTCAGCAACAAGGT+CGG - chr6_1:54504800-54504819 Msa0888940:intron 45.0%
ACTTCCTACTTTCAGCAGCA+TGG + chr6_1:54504836-54504855 None:intergenic 45.0%
!! GTTCCTTAGTGGGAGGTATT+TGG - chr6_1:54504866-54504885 Msa0888940:intron 45.0%
! GTGATCGTTTTGCATCTCGA+AGG - chr6_1:54505028-54505047 Msa0888940:intron 45.0%
GCTTTACGGCTGTGTTTGTA+TGG - chr6_1:54505493-54505512 Msa0888940:intron 45.0%
! GTGCTTCACATCACTGACTA+TGG - chr6_1:54505678-54505697 Msa0888940:CDS 45.0%
AGACGGGCAGAAACATTGTT+TGG + chr6_1:54505963-54505982 None:intergenic 45.0%
! AACAATGTTTCTGCCCGTCT+TGG - chr6_1:54505963-54505982 Msa0888940:intron 45.0%
TGCCCGTCTTGGAAATATGA+AGG - chr6_1:54505974-54505993 Msa0888940:intron 45.0%
! TTGAGATATGGGTTGTTCCC+CGG - chr6_1:54506111-54506130 Msa0888940:intron 45.0%
CTCTGCACACTTCCATGAAT+TGG - chr6_1:54506139-54506158 Msa0888940:intron 45.0%
TTCACACATCTGCCTTTGTG+TGG - chr6_1:54506559-54506578 Msa0888940:intron 45.0%
! GATAGTGGCTAAGAGCATGA+TGG - chr6_1:54506802-54506821 Msa0888940:intron 45.0%
GATGCAACAGCTGAATTTGG+TGG - chr6_1:54506973-54506992 Msa0888940:intron 45.0%
AGAACAAGCTGTGGTGTAAC+AGG - chr6_1:54507049-54507068 Msa0888940:intron 45.0%
TGTCAATGTCCTGTATGCGA+TGG - chr6_1:54507106-54507125 Msa0888940:intron 45.0%
CCTAAATGTCCATCGCATAC+AGG + chr6_1:54507118-54507137 None:intergenic 45.0%
CCTGTATGCGATGGACATTT+AGG - chr6_1:54507115-54507134 Msa0888940:intron 45.0%
TTACAGGCACTTGATCTTGG+AGG - chr6_1:54507342-54507361 Msa0888940:intron 45.0%
ATTCACACTAGTCCATTGCG+TGG - chr6_1:54507429-54507448 Msa0888940:intron 45.0%
CCAAGCTCAAAACCAGTTGT+CGG + chr6_1:54507513-54507532 None:intergenic 45.0%
!!! ACTGGTTTTGAGCTTGGAAC+TGG - chr6_1:54507516-54507535 Msa0888940:intron 45.0%
!!! CTGGTTTTGAGCTTGGAACT+GGG - chr6_1:54507517-54507536 Msa0888940:intron 45.0%
! CATCAATCCTGTTTTGCCTG+AGG - chr6_1:54507545-54507564 Msa0888940:intron 45.0%
AGAATCTTTGCAGCATCCTC+AGG + chr6_1:54507564-54507583 None:intergenic 45.0%
GTGACTCTTTGTGTCAGCTT+AGG - chr6_1:54507691-54507710 Msa0888940:intron 45.0%
GAGTCAAGCCAAGACATTGT+TGG - chr6_1:54507974-54507993 Msa0888940:intron 45.0%
TGATGCATTCACCACCAAAG+AGG - chr6_1:54508234-54508253 Msa0888940:intron 45.0%
TTCAGCAGATACTCTCGAGT+AGG + chr6_1:54508365-54508384 None:intergenic 45.0%
!! CTCGAGAGTATCTGCTGAAT+TGG - chr6_1:54508366-54508385 Msa0888940:intron 45.0%
!! ACAATGGCGGATTGAAGAAG+AGG - chr6_1:54508441-54508460 Msa0888940:intron 45.0%
TAACAGGTCTTCCTCTCAGT+CGG + chr6_1:54508577-54508596 None:intergenic 45.0%
TGGAAAGTGAACGTAGTGTG+TGG - chr6_1:54508611-54508630 Msa0888940:CDS 45.0%
AAGTGGCGAAGAGAAGTCTT+TGG - chr6_1:54508691-54508710 Msa0888940:CDS 45.0%
ATCTCTCCCAAATCTCCTTC+TGG - chr6_1:54509064-54509083 Msa0888940:intron 45.0%
!! GAGACTTTCTGGGATTTCAC+AGG + chr6_1:54509105-54509124 None:intergenic 45.0%
!! AAAAATTGAAAAAAAAATTA+GGG + chr6_1:54502650-54502669 None:intergenic 5.0%
!! AAAAAATTGAAAAAAAAATT+AGG + chr6_1:54502651-54502670 None:intergenic 5.0%
!! TAAATATAAATATATTATGA+CGG - chr6_1:54505791-54505810 Msa0888940:intron 5.0%
!!! TTCTATTAATTTTTATTTTT+AGG - chr6_1:54508334-54508353 Msa0888940:intron 5.0%
TAGCCGCATCTCTCTGACTT+AGG - chr6_1:54502398-54502417 Msa0888940:three_prime_UTR 50.0%
AGCCGCATCTCTCTGACTTA+GGG - chr6_1:54502399-54502418 Msa0888940:three_prime_UTR 50.0%
TGCCCTAAGTCAGAGAGATG+CGG + chr6_1:54502404-54502423 None:intergenic 50.0%
GGTTGTTGAGAGTCCGAATC+CGG - chr6_1:54502959-54502978 Msa0888940:CDS 50.0%
TCCAAACTCCTCAAAACCGC+CGG + chr6_1:54502981-54503000 None:intergenic 50.0%
!! TTTGGATGACGGGTTTGCGT+TGG - chr6_1:54502995-54503014 Msa0888940:CDS 50.0%
!! GTTGGATGGTGGTGAGGTTT+TGG - chr6_1:54503013-54503032 Msa0888940:CDS 50.0%
!!! GATGGTGGTGAGGTTTTGGA+TGG - chr6_1:54503017-54503036 Msa0888940:CDS 50.0%
!!! GGTGAGGTTTTGGATGGGTT+TGG - chr6_1:54503023-54503042 Msa0888940:CDS 50.0%
CATTGAGAGTCCGGTGCATT+CGG - chr6_1:54503061-54503080 Msa0888940:CDS 50.0%
AACAACTGCTCCGAATGCAC+CGG + chr6_1:54503074-54503093 None:intergenic 50.0%
GTTGTTGGATTTGACGCCGA+AGG - chr6_1:54503088-54503107 Msa0888940:CDS 50.0%
GATTTGACGCCGAAGGATGT+TGG - chr6_1:54503095-54503114 Msa0888940:CDS 50.0%
! TGTCTGGTGTCAGTGCTTCA+TGG + chr6_1:54503539-54503558 None:intergenic 50.0%
! GTCAGTGTCGTGTTGGTGTT+TGG - chr6_1:54504151-54504170 Msa0888940:CDS 50.0%
! TCGTGTTGGTGTTTGGGCAT+TGG - chr6_1:54504158-54504177 Msa0888940:CDS 50.0%
!! ACCCTGTTAGGTTGGTAGAG+TGG - chr6_1:54504248-54504267 Msa0888940:CDS 50.0%
AGTAGGAAGAATGTGCGGAG+TGG - chr6_1:54504289-54504308 Msa0888940:CDS 50.0%
TGTGCGGAGTGGTATACCTT+AGG - chr6_1:54504300-54504319 Msa0888940:CDS 50.0%
AGAGCCAACCTTGTTCAAGG+TGG + chr6_1:54504352-54504371 None:intergenic 50.0%
TCACTTGGCATGCAATGAGG+TGG - chr6_1:54504618-54504637 Msa0888940:intron 50.0%
CATGCAATGAGGTGGCTTAG+TGG - chr6_1:54504626-54504645 Msa0888940:intron 50.0%
GGAACCATGCTGCTGAAAGT+AGG - chr6_1:54504829-54504848 Msa0888940:intron 50.0%
CAAGGCTTGACATCACCCAA+AGG + chr6_1:54504916-54504935 None:intergenic 50.0%
AGCGTGGCTCAATTACTGAG+AGG + chr6_1:54505320-54505339 None:intergenic 50.0%
!!! CTGCACCAGCTTTTTCACCA+TGG + chr6_1:54505896-54505915 None:intergenic 50.0%
TTGGAACAATTGGCAAGCCC+AGG + chr6_1:54505944-54505963 None:intergenic 50.0%
AAGTGTGCAGAGTGATACCG+GGG + chr6_1:54506131-54506150 None:intergenic 50.0%
GAAGTGTGCAGAGTGATACC+GGG + chr6_1:54506132-54506151 None:intergenic 50.0%
! GGAAGTGTGCAGAGTGATAC+CGG + chr6_1:54506133-54506152 None:intergenic 50.0%
CTGCCTTTGTGTGGTAAACC+TGG - chr6_1:54506568-54506587 Msa0888940:intron 50.0%
AGCACAGTGAGTCGTGATAG+TGG - chr6_1:54506787-54506806 Msa0888940:intron 50.0%
! TTTGGTGGTCACAGTCCGTT+AGG - chr6_1:54506988-54507007 Msa0888940:intron 50.0%
GTTCCAGTCAGGTCACCTAA+CGG + chr6_1:54507006-54507025 None:intergenic 50.0%
GAGCTATGGAGAACAAGCTG+TGG - chr6_1:54507040-54507059 Msa0888940:intron 50.0%
ACTAGTCCATTGCGTGGTGA+TGG - chr6_1:54507435-54507454 Msa0888940:intron 50.0%
CTAGTCCATTGCGTGGTGAT+GGG - chr6_1:54507436-54507455 Msa0888940:intron 50.0%
CAGAGCTGGCATACAGTCAT+TGG - chr6_1:54507460-54507479 Msa0888940:intron 50.0%
!!! CCGACAACTGGTTTTGAGCT+TGG - chr6_1:54507510-54507529 Msa0888940:intron 50.0%
CTGGGCTACCAACAATGTCT+TGG + chr6_1:54507985-54508004 None:intergenic 50.0%
TGAATTGGGCACGAGCCATT+GGG - chr6_1:54508381-54508400 Msa0888940:intron 50.0%
!! GGCGGATTGAAGAAGAGGAT+AGG - chr6_1:54508446-54508465 Msa0888940:intron 50.0%
GATGCATTAGCTCGCAAGAC+TGG - chr6_1:54508527-54508546 Msa0888940:CDS 50.0%
! GCGTTTGCCACCAACGGTTT+TGG + chr6_1:54502538-54502557 None:intergenic 55.0%
TGTTGAGAGTCCGAATCCGG+CGG - chr6_1:54502962-54502981 Msa0888940:CDS 55.0%
CTCCTCAAAACCGCCGGATT+CGG + chr6_1:54502975-54502994 None:intergenic 55.0%
!!! TCCGGCGGTTTTGAGGAGTT+TGG - chr6_1:54502977-54502996 Msa0888940:CDS 55.0%
!! GATGACGGGTTTGCGTTGGA+TGG - chr6_1:54502999-54503018 Msa0888940:CDS 55.0%
! GTTTGCGTTGGATGGTGGTG+AGG - chr6_1:54503007-54503026 Msa0888940:CDS 55.0%
GGTGCATTCGGAGCAGTTGT+TGG - chr6_1:54503073-54503092 Msa0888940:CDS 55.0%
!! AGCACTGACACCAGACACGA+TGG - chr6_1:54503542-54503561 Msa0888940:intron 55.0%
! GCACTGACACCAGACACGAT+GGG - chr6_1:54503543-54503562 Msa0888940:intron 55.0%
CACTGACACCAGACACGATG+GGG - chr6_1:54503544-54503563 Msa0888940:intron 55.0%
! CAGCAACAAGGTCGGCTTAG+TGG - chr6_1:54504808-54504827 Msa0888940:intron 55.0%
!! TCGAGATGGGCTGAGCAACA+AGG + chr6_1:54504934-54504953 None:intergenic 55.0%
AAGGGAATGAAGGCAGAGCG+TGG + chr6_1:54505336-54505355 None:intergenic 55.0%
AGTCCGTTAGGTGACCTGAC+TGG - chr6_1:54507000-54507019 Msa0888940:intron 55.0%
TCTGACCCATCACCACGCAA+TGG + chr6_1:54507444-54507463 None:intergenic 55.0%
CCAGTTGTCGGAATCAGCTG+AGG + chr6_1:54507501-54507520 None:intergenic 55.0%
! CCTCAGCTGATTCCGACAAC+TGG - chr6_1:54507498-54507517 Msa0888940:intron 55.0%
GCAGCATCCTCAGGCAAAAC+AGG + chr6_1:54507555-54507574 None:intergenic 55.0%
CTGAATTGGGCACGAGCCAT+TGG - chr6_1:54508380-54508399 Msa0888940:intron 55.0%
AAACCCGTGCTCTCTCCCAA+TGG + chr6_1:54508399-54508418 None:intergenic 55.0%
GGTCTTCCTCTCAGTCGGAA+TGG + chr6_1:54508572-54508591 None:intergenic 55.0%
ACATATGCCGGTCGGCTAAG+TGG - chr6_1:54508674-54508693 Msa0888940:CDS 55.0%
CGAACGGCGTTTGCCACCAA+CGG + chr6_1:54502544-54502563 None:intergenic 60.0%
! GTCCGAATCCGGCGGTTTTG+AGG - chr6_1:54502970-54502989 Msa0888940:CDS 60.0%
! GACGGGTTTGCGTTGGATGG+TGG - chr6_1:54503002-54503021 Msa0888940:CDS 60.0%
!! GTTTGGGCATTGGCACGCGT+CGG - chr6_1:54504168-54504187 Msa0888940:CDS 60.0%
CGAGCCATTGGGAGAGAGCA+CGG - chr6_1:54508392-54508411 Msa0888940:intron 60.0%
! GAGCCATTGGGAGAGAGCAC+GGG - chr6_1:54508393-54508412 Msa0888940:intron 60.0%
GGGTGTCCATTCCGACTGAG+AGG - chr6_1:54508563-54508582 Msa0888940:CDS 60.0%
! GCGATCGGGAGCACATATGC+CGG - chr6_1:54508662-54508681 Msa0888940:CDS 60.0%
! TCGGGAGCACATATGCCGGT+CGG - chr6_1:54508666-54508685 Msa0888940:CDS 60.0%
CTCTTCGCCACTTAGCCGAC+CGG + chr6_1:54508684-54508703 None:intergenic 60.0%
GACGCCGAAGGATGTTGGCG+AGG - chr6_1:54503100-54503119 Msa0888940:CDS 65.0%
CATTGGCACGCGTCGGAGTC+TGG - chr6_1:54504175-54504194 Msa0888940:CDS 65.0%
!! GCGTGGTGATGGGTCAGAGC+TGG - chr6_1:54507446-54507465 Msa0888940:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 54502375 54509316 54502375 ID=Msa0888940;Name=Msa0888940
chr6_1 mRNA 54502375 54509316 54502375 ID=Msa0888940-mRNA-1;Parent=Msa0888940;Name=Msa0888940-mRNA-1;_AED=0.11;_eAED=0.11;_QI=153|1|1|1|1|1|6|445|560
chr6_1 exon 54502375 54503335 54502375 ID=Msa0888940-mRNA-1:exon:11001;Parent=Msa0888940-mRNA-1
chr6_1 exon 54503436 54503502 54503436 ID=Msa0888940-mRNA-1:exon:11000;Parent=Msa0888940-mRNA-1
chr6_1 exon 54504072 54504343 54504072 ID=Msa0888940-mRNA-1:exon:10999;Parent=Msa0888940-mRNA-1
chr6_1 exon 54505519 54505809 54505519 ID=Msa0888940-mRNA-1:exon:10998;Parent=Msa0888940-mRNA-1
chr6_1 exon 54508504 54508965 54508504 ID=Msa0888940-mRNA-1:exon:10997;Parent=Msa0888940-mRNA-1
chr6_1 exon 54509089 54509316 54509089 ID=Msa0888940-mRNA-1:exon:10996;Parent=Msa0888940-mRNA-1
chr6_1 five_prime_UTR 54509164 54509316 54509164 ID=Msa0888940-mRNA-1:five_prime_utr;Parent=Msa0888940-mRNA-1
chr6_1 CDS 54509089 54509163 54509089 ID=Msa0888940-mRNA-1:cds;Parent=Msa0888940-mRNA-1
chr6_1 CDS 54508504 54508965 54508504 ID=Msa0888940-mRNA-1:cds;Parent=Msa0888940-mRNA-1
chr6_1 CDS 54505519 54505809 54505519 ID=Msa0888940-mRNA-1:cds;Parent=Msa0888940-mRNA-1
chr6_1 CDS 54504072 54504343 54504072 ID=Msa0888940-mRNA-1:cds;Parent=Msa0888940-mRNA-1
chr6_1 CDS 54503436 54503502 54503436 ID=Msa0888940-mRNA-1:cds;Parent=Msa0888940-mRNA-1
chr6_1 CDS 54502820 54503335 54502820 ID=Msa0888940-mRNA-1:cds;Parent=Msa0888940-mRNA-1
chr6_1 three_prime_UTR 54502375 54502819 54502375 ID=Msa0888940-mRNA-1:three_prime_utr;Parent=Msa0888940-mRNA-1
Gene Sequence

>Msa0888940

ATGAGAACCAAAACCGTTGGTGGCAAACGCCGTTCGTTAATCAACCCTAATTCACCATTCGTTCTTTCAACACTGGAAACCGATGAGGAAGAAGATCCAAATCCAATTTACCGAAAATCAACGGTTTGGAATGAATGGGTTATCTTCAAGCAAGATAAAACGAAGAAAGCTTCGGACTTTAAGGGAAAATCGACGTATAATACGAATCCTAGTAGGAATAAGCCGTGTGTGTATTGCATTGGTCATGAAGATGAATGTAGTGAGGAGATTTTTAGGGTTCCGTTTGATGAACCGAATTGGAAGATTAGGGTTGTTGAGAGTCCGAATCCGGCGGTTTTGAGGAGTTTGGATGACGGGTTTGCGTTGGATGGTGGTGAGGTTTTGGATGGGTTTGGGATTCATGATGTTGTCATTGAGAGTCCGGTGCATTCGGAGCAGTTGTTGGATTTGACGCCGAAGGATGTTGGCGAGGTTTTTGTTGCTTTCAGTAATAGGATCAGAGAATTGGTTCATCTTGAGTCTATCAAATATGTTCAGGTGTTTAAAAACCATGGTGAAAAAGCTGGTGCAGCAATGAGTCATTCTCATAGTCAAATCCTGGGCTTGCCAATTGTTCCAAACAATGTTTCTGCCCGTCTTGGAAATATGAAGGATTTTTTTTATCAGACAGGGAAGTGCTGTATTTGTGACATTCAACTTGAGGATCTTTTGATTGATTCATCTTCCTACTTCTTTTCATTGGTTCCGTTTGCTGCTTCATTTCCTTTTGAGATATGGGTTGTTCCCCGGTATCACTCTGCACACTTCCATGAATTGGATGATGAAATGGCACTTGATCTTGGAGGTTTGATGAGAACCACTCTTAGAAAGATGTCTTTTCAATTGAACAATCCGCCATACAACTTTATGATTCACACTAGTCCATTGCGTGGTGATGGGTCAGAGCTGGCATACAGTCATTGGTTTATACAGATAATACCTCAGCTGATTCCGACAACTGGTTTTGAGCTTGGAACTGGGTCTCACATCAATCCTGTTTTGCCTGAGGATGCTGCAAAGATTCTAAGAGAAGTGATTGTTCCTGTGTTTGCACATGAAAGGCGCATGGTGGGATTTTTACCTCCAACTAAGATTGTGGATTATAGTGATGCATTCACCACCAAAGAGGTGTTTCCTACTCGAGAGTATCTGCTGAATTGGGCACGAGCCATTGGGAGAGAGCACGGGTTTACTGTTATCATTCAAAGATCAGACAATGGCGGATTGAAGAAGAGGATAGGAAGGAAAACAACTGTGATTTTGGGTTGCGAAAGAAGTGGAAAATATAGACAATACAAGGATGCATTAGCTCGCAAGACTGGAACAAAGAAATGTGGGTGTCCATTCCGACTGAGAGGAAGACCTGTTAGAAATGGTGATGGATGGAAAGTGAACGTAGTGTGTGGATTTCACAACCATGAAGTAATTGAAACTGCGATCGGGAGCACATATGCCGGTCGGCTAAGTGGCGAAGAGAAGTCTTTGGTCGATGATCTGACAAGAAGCAATTACAAACCGAAAGACATATTACAGACATTGAAAGAACGTAATGAAGAGAATCTCACTTCTATCAAGCAGATTTATAATTTGCGCCAACAGCTAAAACGTTCTAGATTAGAATTAGAAATGGAAAATTCGGCATAG

Protein sequence

>Msa0888940

MRTKTVGGKRRSLINPNSPFVLSTLETDEEEDPNPIYRKSTVWNEWVIFKQDKTKKASDFKGKSTYNTNPSRNKPCVYCIGHEDECSEEIFRVPFDEPNWKIRVVESPNPAVLRSLDDGFALDGGEVLDGFGIHDVVIESPVHSEQLLDLTPKDVGEVFVAFSNRIRELVHLESIKYVQVFKNHGEKAGAAMSHSHSQILGLPIVPNNVSARLGNMKDFFYQTGKCCICDIQLEDLLIDSSSYFFSLVPFAASFPFEIWVVPRYHSAHFHELDDEMALDLGGLMRTTLRKMSFQLNNPPYNFMIHTSPLRGDGSELAYSHWFIQIIPQLIPTTGFELGTGSHINPVLPEDAAKILREVIVPVFAHERRMVGFLPPTKIVDYSDAFTTKEVFPTREYLLNWARAIGREHGFTVIIQRSDNGGLKKRIGRKTTVILGCERSGKYRQYKDALARKTGTKKCGCPFRLRGRPVRNGDGWKVNVVCGFHNHEVIETAIGSTYAGRLSGEEKSLVDDLTRSNYKPKDILQTLKERNEENLTSIKQIYNLRQQLKRSRLELEMENSA*