AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0749300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0749300 MtrunA17_Chr5g0412271 92.647 68 3 1 1 66 161 228 3.47e-39 128
Msa0749300 MtrunA17_Chr5g0412461 80.597 67 12 1 1 66 161 227 2.05e-32 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0749300 AT2G22540.3 56.716 67 25 2 2 66 176 240 6.24e-15 66.2
Msa0749300 AT2G22540.1 56.716 67 25 2 2 66 176 240 6.24e-15 66.2
Msa0749300 AT2G22540.2 56.716 67 25 2 2 66 171 235 6.95e-15 66.2

Find 57 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTATTGTTCCTCAAAA+AGG 0.189187 5_2:-2783815 Msa0749300:five_prime_UTR
TACCTTAATTTATCTTCTTT+TGG 0.203792 5_2:+2783364 None:intergenic
GATGTGTAGTTAACTATTTA+TGG 0.226009 5_2:+2783547 None:intergenic
ATCCAAAAGAAGATAAATTA+AGG 0.249601 5_2:-2783366 Msa0749300:five_prime_UTR
ACATTCCTTCAGCCGGCATA+TGG 0.334671 5_2:+2781405 None:intergenic
AAGAAGAGGTTTAATCAAAA+AGG 0.335755 5_2:-2783262 Msa0749300:five_prime_UTR
TTTGTGTGACTGGGTGTGTT+TGG 0.352333 5_2:-2781383 Msa0749300:three_prime_UTR
TATCTGAACTCTCATAATCT+TGG 0.352501 5_2:+2781612 None:intergenic
ACTGGGTGTGTTTGGATTGA+GGG 0.357395 5_2:-2781375 Msa0749300:three_prime_UTR
CACCAGTTTCTTCTCTATAG+AGG 0.366305 5_2:-2783698 Msa0749300:five_prime_UTR
ATCTGAACTCTCATAATCTT+GGG 0.383551 5_2:+2781613 None:intergenic
AGAAGAAACTGGTGAACAAA+TGG 0.387332 5_2:+2783707 None:intergenic
GACTGGGTGTGTTTGGATTG+AGG 0.397168 5_2:-2781376 Msa0749300:three_prime_UTR
TGAAGGAATGTTTGTGTGAC+TGG 0.398747 5_2:-2781393 Msa0749300:three_prime_UTR
TCTTTGAATACTCCAACTTA+AGG 0.399297 5_2:-2783173 Msa0749300:intron
TGTGTTTGGATTGAGGGTTT+AGG 0.420522 5_2:-2781369 Msa0749300:three_prime_UTR
GACAAAAGAAAGAGAAGTGA+AGG 0.420606 5_2:+2783521 None:intergenic
TCAGATACATCGCTCAAGTT+GGG 0.436087 5_2:-2781596 Msa0749300:CDS
ATGATGGATCATAAGGTTGC+GGG 0.443250 5_2:-2781740 Msa0749300:intron
AAATTAAGGTAAAGAAGAAA+TGG 0.447909 5_2:-2783352 Msa0749300:five_prime_UTR
GATGCAGTCATGCAGGCATT+TGG 0.450177 5_2:+2783601 None:intergenic
GTCTCTGAAAGATAATGAAA+TGG 0.452122 5_2:+2783652 None:intergenic
GAGAAAGAAAGACCTTAAGT+TGG 0.470112 5_2:+2783161 None:intergenic
TTCAGATACATCGCTCAAGT+TGG 0.479254 5_2:-2781597 Msa0749300:CDS
CATTCCTTCAGCCGGCATAT+GGG 0.480333 5_2:+2781406 None:intergenic
ATCCTCTATAGAGAAGAAAC+TGG 0.502434 5_2:+2783696 None:intergenic
CTCTATAGAGGATCTAAAAG+AGG 0.520099 5_2:-2783686 Msa0749300:five_prime_UTR
TGGATGAATTATGGGTTAGG+AGG 0.527557 5_2:+2783750 None:intergenic
ATCATACATGTTGCTTTAGT+CGG 0.530014 5_2:+2781927 None:intergenic
ATAATCTTGGGGAGGACCAA+TGG 0.530085 5_2:+2781625 None:intergenic
GAAGAAACTGGTGAACAAAT+GGG 0.545104 5_2:+2783708 None:intergenic
CACACAAACATTCCTTCAGC+CGG 0.560898 5_2:+2781398 None:intergenic
TATGAGAATGTGGTTAATGA+AGG 0.563013 5_2:-2781683 Msa0749300:CDS
ATGAAATGATGCAGTCATGC+AGG 0.563073 5_2:+2783594 None:intergenic
TTTGGATTGAGGGTTTAGGA+AGG 0.563543 5_2:-2781365 Msa0749300:three_prime_UTR
ATTTGCAGGCTCCCATATGC+CGG 0.566203 5_2:-2781417 Msa0749300:intron
GGCTCCCATATGCCGGCTGA+AGG 0.566587 5_2:-2781410 Msa0749300:exon
TTGGATTGAGGGTTTAGGAA+GGG 0.570252 5_2:-2781364 Msa0749300:three_prime_UTR
GATTGAGGGTTTAGGAAGGG+AGG 0.571429 5_2:-2781361 Msa0749300:three_prime_UTR
ATGATTAACGACAGAATGGT+TGG 0.571480 5_2:-2781716 Msa0749300:CDS
GTAGTGTGAAATGTACTTTG+TGG 0.574489 5_2:+2783782 None:intergenic
ACCAACGTTTACAACTCCAT+TGG 0.576740 5_2:-2781641 Msa0749300:CDS
TCTGCAGGGAAGGCAACTGA+TGG 0.577814 5_2:-2781960 Msa0749300:intron
GAAGGAATGTTTGTGTGACT+GGG 0.578364 5_2:-2781392 Msa0749300:three_prime_UTR
GGGCATGATTAACGACAGAA+TGG 0.581587 5_2:-2781720 Msa0749300:CDS
ATAGAGGATCTAAAAGAGGA+AGG 0.586408 5_2:-2783682 Msa0749300:five_prime_UTR
TTGAGGAACAATAATGAACA+TGG 0.587700 5_2:+2783820 None:intergenic
AACGTTGGTGACAGATTCTG+AGG 0.592708 5_2:+2781655 None:intergenic
CAGATACATCGCTCAAGTTG+GGG 0.603531 5_2:-2781595 Msa0749300:intron
TCTGAACTCTCATAATCTTG+GGG 0.621502 5_2:+2781614 None:intergenic
ATTAACGACAGAATGGTTGG+AGG 0.640229 5_2:-2781713 Msa0749300:CDS
ACCAATGGAGTTGTAAACGT+TGG 0.652128 5_2:+2781640 None:intergenic
AGGTGATGAATATGAGAATG+TGG 0.655081 5_2:-2781693 Msa0749300:CDS
GAACTCTCATAATCTTGGGG+AGG 0.658116 5_2:+2781617 None:intergenic
AGATTGAAAACGCAACGGCG+AGG 0.667280 5_2:-2783305 Msa0749300:five_prime_UTR
AAAGAAGATTGAAAACGCAA+CGG 0.680027 5_2:-2783310 Msa0749300:five_prime_UTR
GAAACTGGTGAACAAATGGG+TGG 0.701064 5_2:+2783711 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTGGATGAATTAT+GGG + chr5_2:2781315-2781334 None:intergenic 15.0%
!!! ATTTATTTTTGGATGAATTA+TGG + chr5_2:2781316-2781335 None:intergenic 15.0%
!! ATATATGTAGCAAAAAATAA+AGG - chr5_2:2781633-2781652 Msa0749300:CDS 15.0%
!! AAAAATATCATGCAAATATT+GGG + chr5_2:2783247-2783266 None:intergenic 15.0%
!! TAAAAATATCATGCAAATAT+TGG + chr5_2:2783248-2783267 None:intergenic 15.0%
!! AAAAAATTACTTGTATATGA+TGG - chr5_2:2783298-2783317 Msa0749300:five_prime_UTR 15.0%
!!! GTGGTTTCTATATTTATTTT+TGG + chr5_2:2781327-2781346 None:intergenic 20.0%
!! ATCCAAAAGAAGATAAATTA+AGG - chr5_2:2781688-2781707 Msa0749300:CDS 20.0%
!!! TACCTTAATTTATCTTCTTT+TGG + chr5_2:2781693-2781712 None:intergenic 20.0%
!! AAATTAAGGTAAAGAAGAAA+TGG - chr5_2:2781702-2781721 Msa0749300:CDS 20.0%
!! ACTCTAATGAATTAAAACAA+TGG - chr5_2:2781941-2781960 Msa0749300:CDS 20.0%
!!! GTAGATCTTTTTTCAAAAAA+TGG - chr5_2:2782033-2782052 Msa0749300:intron 20.0%
!! TTTATATAGCTAATGTTACA+CGG - chr5_2:2782623-2782642 Msa0749300:intron 20.0%
!!! TTTAACCATTGTTTTTGAAA+CGG + chr5_2:2782660-2782679 None:intergenic 20.0%
!!! AATTATGCTTAGTTTTGTAT+TGG - chr5_2:2782946-2782965 Msa0749300:intron 20.0%
!!! AGTAAAAATTGGTTGTTTTA+GGG + chr5_2:2783071-2783090 None:intergenic 20.0%
!! TAAGTGAACTAATAATAATG+TGG + chr5_2:2783502-2783521 None:intergenic 20.0%
!!! AATGTAGAATTTCTTTTTGA+AGG - chr5_2:2783539-2783558 Msa0749300:five_prime_UTR 20.0%
!!! GATTTTTGGTGATGTTTATT+TGG + chr5_2:2781215-2781234 None:intergenic 25.0%
!! CAATAATGAACATGGATTTT+TGG + chr5_2:2781229-2781248 None:intergenic 25.0%
! TTCATTATTGTTCCTCAAAA+AGG - chr5_2:2781239-2781258 Msa0749300:three_prime_UTR 25.0%
! GATGTGTAGTTAACTATTTA+TGG + chr5_2:2781510-2781529 None:intergenic 25.0%
!! TCTTTTGTCTCTTCTTTTTT+AGG - chr5_2:2781547-2781566 Msa0749300:intron 25.0%
! AAGAAGAGGTTTAATCAAAA+AGG - chr5_2:2781792-2781811 Msa0749300:intron 25.0%
! AAGTGAAAACAAATTAACAC+AGG - chr5_2:2782097-2782116 Msa0749300:intron 25.0%
!!! TTTTTCAGCCAACATTAATT+AGG - chr5_2:2782226-2782245 Msa0749300:intron 25.0%
! CCAATTATCCTAATTAATGT+TGG + chr5_2:2782237-2782256 None:intergenic 25.0%
! CCAACATTAATTAGGATAAT+TGG - chr5_2:2782234-2782253 Msa0749300:intron 25.0%
! TTTATCCTAACAAGTGAAAT+CGG - chr5_2:2782340-2782359 Msa0749300:intron 25.0%
! TTACGAGTTAGATCAAAAAA+TGG + chr5_2:2782409-2782428 None:intergenic 25.0%
!!! AGATTTGTGAACAACTTTTT+TGG + chr5_2:2782728-2782747 None:intergenic 25.0%
!! GACGTCAATATAAACAATTT+TGG + chr5_2:2782768-2782787 None:intergenic 25.0%
!!! GTGTTATTTTAGAAGATAGA+TGG + chr5_2:2782858-2782877 None:intergenic 25.0%
! GAAGCTAATTTAGATATATG+TGG + chr5_2:2783025-2783044 None:intergenic 25.0%
!!! CAGTAAAAATTGGTTGTTTT+AGG + chr5_2:2783072-2783091 None:intergenic 25.0%
TTGAGGAACAATAATGAACA+TGG + chr5_2:2781237-2781256 None:intergenic 30.0%
! GGATTTTACTTTCCTTTTTG+AGG + chr5_2:2781254-2781273 None:intergenic 30.0%
! TTTTGGATGAATTATGGGTT+AGG + chr5_2:2781310-2781329 None:intergenic 30.0%
! GTCTCTGAAAGATAATGAAA+TGG + chr5_2:2781405-2781424 None:intergenic 30.0%
AAAGAAGATTGAAAACGCAA+CGG - chr5_2:2781744-2781763 Msa0749300:intron 30.0%
!!! ACTTTTTCAAAGAGAAGAAG+AGG - chr5_2:2781778-2781797 Msa0749300:intron 30.0%
! TCATCATTTTCTCTTCTACT+GGG - chr5_2:2781854-2781873 Msa0749300:intron 30.0%
TCTTTGAATACTCCAACTTA+AGG - chr5_2:2781881-2781900 Msa0749300:intron 30.0%
TTCTCTCATGAATGAAAACA+CGG - chr5_2:2781911-2781930 Msa0749300:intron 30.0%
TCTAAACAAATGCACAACAT+AGG + chr5_2:2782183-2782202 None:intergenic 30.0%
! TCACTTGTTAGGATAAAGTT+TGG + chr5_2:2782337-2782356 None:intergenic 30.0%
! TTCACACAAAACACATTTTG+AGG + chr5_2:2782455-2782474 None:intergenic 30.0%
ACATATAAACCTAAACCACT+TGG - chr5_2:2782559-2782578 Msa0749300:intron 30.0%
!!! TTTGTGAACAACTTTTTTGG+TGG + chr5_2:2782725-2782744 None:intergenic 30.0%
!!! TGTTTTAGGGATGAAAGTAA+GGG + chr5_2:2783058-2783077 None:intergenic 30.0%
!!! TTGTTTTAGGGATGAAAGTA+AGG + chr5_2:2783059-2783078 None:intergenic 30.0%
! CAATTTTTACTGAATCTGCA+GGG - chr5_2:2783080-2783099 Msa0749300:intron 30.0%
!! ATCATACATGTTGCTTTAGT+CGG + chr5_2:2783130-2783149 None:intergenic 30.0%
!! CTTGTATATGATGGATCATA+AGG - chr5_2:2783307-2783326 Msa0749300:five_prime_UTR 30.0%
TATGAGAATGTGGTTAATGA+AGG - chr5_2:2783371-2783390 Msa0749300:five_prime_UTR 30.0%
ATCTGAACTCTCATAATCTT+GGG + chr5_2:2783444-2783463 None:intergenic 30.0%
TATCTGAACTCTCATAATCT+TGG + chr5_2:2783445-2783464 None:intergenic 30.0%
GTAGTGTGAAATGTACTTTG+TGG + chr5_2:2781275-2781294 None:intergenic 35.0%
GAAGAAACTGGTGAACAAAT+GGG + chr5_2:2781349-2781368 None:intergenic 35.0%
AGAAGAAACTGGTGAACAAA+TGG + chr5_2:2781350-2781369 None:intergenic 35.0%
ATCCTCTATAGAGAAGAAAC+TGG + chr5_2:2781361-2781380 None:intergenic 35.0%
CTCTATAGAGGATCTAAAAG+AGG - chr5_2:2781368-2781387 Msa0749300:three_prime_UTR 35.0%
ATAGAGGATCTAAAAGAGGA+AGG - chr5_2:2781372-2781391 Msa0749300:three_prime_UTR 35.0%
GACAAAAGAAAGAGAAGTGA+AGG + chr5_2:2781536-2781555 None:intergenic 35.0%
TCTCTCTTTCAATTATACGC+TGG - chr5_2:2781581-2781600 Msa0749300:intron 35.0%
! CTCATCATTTTCTCTTCTAC+TGG - chr5_2:2781853-2781872 Msa0749300:intron 35.0%
GAGAAAGAAAGACCTTAAGT+TGG + chr5_2:2781896-2781915 None:intergenic 35.0%
CTAAATCACTGATCAGAGTT+GGG + chr5_2:2782262-2782281 None:intergenic 35.0%
ACTAAATCACTGATCAGAGT+TGG + chr5_2:2782263-2782282 None:intergenic 35.0%
! CAATTGCACTGAAGAGTTTT+AGG + chr5_2:2782295-2782314 None:intergenic 35.0%
! TGTAACCGATTTCACTTGTT+AGG + chr5_2:2782348-2782367 None:intergenic 35.0%
!! CACAAAACACATTTTGAGGA+GGG + chr5_2:2782451-2782470 None:intergenic 35.0%
!! ACACAAAACACATTTTGAGG+AGG + chr5_2:2782452-2782471 None:intergenic 35.0%
!!! ACCATTGTTTTTGAAACGGA+GGG + chr5_2:2782656-2782675 None:intergenic 35.0%
!!! AACCATTGTTTTTGAAACGG+AGG + chr5_2:2782657-2782676 None:intergenic 35.0%
!! GTGTGTTTGAGTTTTCTAGT+CGG - chr5_2:2782681-2782700 Msa0749300:intron 35.0%
AAAATTCACACACACAAGTG+GGG + chr5_2:2782817-2782836 None:intergenic 35.0%
GAAAATTCACACACACAAGT+GGG + chr5_2:2782818-2782837 None:intergenic 35.0%
TGAAAATTCACACACACAAG+TGG + chr5_2:2782819-2782838 None:intergenic 35.0%
CCTGCAGATTCAGTAAAAAT+TGG + chr5_2:2783082-2783101 None:intergenic 35.0%
! CCAATTTTTACTGAATCTGC+AGG - chr5_2:2783079-2783098 Msa0749300:intron 35.0%
!! TATGATGGATCATAAGGTTG+CGG - chr5_2:2783313-2783332 Msa0749300:five_prime_UTR 35.0%
ATGATTAACGACAGAATGGT+TGG - chr5_2:2783338-2783357 Msa0749300:five_prime_UTR 35.0%
AGGTGATGAATATGAGAATG+TGG - chr5_2:2783361-2783380 Msa0749300:five_prime_UTR 35.0%
TCTGAACTCTCATAATCTTG+GGG + chr5_2:2783443-2783462 None:intergenic 35.0%
!! TGGATGAATTATGGGTTAGG+AGG + chr5_2:2781307-2781326 None:intergenic 40.0%
CACCAGTTTCTTCTCTATAG+AGG - chr5_2:2781356-2781375 Msa0749300:three_prime_UTR 40.0%
ATGAAATGATGCAGTCATGC+AGG + chr5_2:2781463-2781482 None:intergenic 40.0%
!! AAACACATTTTGAGGAGGGA+CGG + chr5_2:2782447-2782466 None:intergenic 40.0%
AGAGTGGTTGAATTGGACAA+GGG + chr5_2:2782521-2782540 None:intergenic 40.0%
TCCAATTCAACCACTCTCAT+AGG - chr5_2:2782524-2782543 Msa0749300:intron 40.0%
TCCTATGAGAGTGGTTGAAT+TGG + chr5_2:2782528-2782547 None:intergenic 40.0%
TCTGTACTATCCTATGAGAG+TGG + chr5_2:2782537-2782556 None:intergenic 40.0%
TTATGTGCACCAAGTGGTTT+AGG + chr5_2:2782571-2782590 None:intergenic 40.0%
GCATTATTATGTGCACCAAG+TGG + chr5_2:2782577-2782596 None:intergenic 40.0%
ATCCATGTGAACATTGCACA+GGG + chr5_2:2782599-2782618 None:intergenic 40.0%
TATCCATGTGAACATTGCAC+AGG + chr5_2:2782600-2782619 None:intergenic 40.0%
TCCCTCCGTTTCAAAAACAA+TGG - chr5_2:2782652-2782671 Msa0749300:intron 40.0%
! TTTTACTGAATCTGCAGGGA+AGG - chr5_2:2783084-2783103 Msa0749300:intron 40.0%
!! ATGATGGATCATAAGGTTGC+GGG - chr5_2:2783314-2783333 Msa0749300:five_prime_UTR 40.0%
ATTAACGACAGAATGGTTGG+AGG - chr5_2:2783341-2783360 Msa0749300:five_prime_UTR 40.0%
ACCAACGTTTACAACTCCAT+TGG - chr5_2:2783413-2783432 Msa0749300:intron 40.0%
ACCAATGGAGTTGTAAACGT+TGG + chr5_2:2783417-2783436 None:intergenic 40.0%
TTCAGATACATCGCTCAAGT+TGG - chr5_2:2783457-2783476 Msa0749300:intron 40.0%
TCAGATACATCGCTCAAGTT+GGG - chr5_2:2783458-2783477 Msa0749300:intron 40.0%
CGCTTTCATGTACTATTTGC+AGG - chr5_2:2783623-2783642 Msa0749300:five_prime_UTR 40.0%
TGAAGGAATGTTTGTGTGAC+TGG - chr5_2:2783661-2783680 Msa0749300:five_prime_UTR 40.0%
GAAGGAATGTTTGTGTGACT+GGG - chr5_2:2783662-2783681 Msa0749300:five_prime_UTR 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr5_2:2783685-2783704 Msa0749300:five_prime_UTR 40.0%
TTTGGATTGAGGGTTTAGGA+AGG - chr5_2:2783689-2783708 Msa0749300:five_prime_UTR 40.0%
TTGGATTGAGGGTTTAGGAA+GGG - chr5_2:2783690-2783709 Msa0749300:five_prime_UTR 40.0%
GAAACTGGTGAACAAATGGG+TGG + chr5_2:2781346-2781365 None:intergenic 45.0%
!!! GCACTGAAGAGTTTTAGGTG+TGG + chr5_2:2782290-2782309 None:intergenic 45.0%
GAGAGTGGTTGAATTGGACA+AGG + chr5_2:2782522-2782541 None:intergenic 45.0%
GGGATGAAAGTAAGGGTTGT+AGG + chr5_2:2783051-2783070 None:intergenic 45.0%
GGGCATGATTAACGACAGAA+TGG - chr5_2:2783334-2783353 Msa0749300:five_prime_UTR 45.0%
!! AACGTTGGTGACAGATTCTG+AGG + chr5_2:2783402-2783421 None:intergenic 45.0%
ATAATCTTGGGGAGGACCAA+TGG + chr5_2:2783432-2783451 None:intergenic 45.0%
GAACTCTCATAATCTTGGGG+AGG + chr5_2:2783440-2783459 None:intergenic 45.0%
! CAGATACATCGCTCAAGTTG+GGG - chr5_2:2783459-2783478 Msa0749300:intron 45.0%
CACACAAACATTCCTTCAGC+CGG + chr5_2:2783659-2783678 None:intergenic 45.0%
TTTGTGTGACTGGGTGTGTT+TGG - chr5_2:2783671-2783690 Msa0749300:five_prime_UTR 45.0%
ACTGGGTGTGTTTGGATTGA+GGG - chr5_2:2783679-2783698 Msa0749300:five_prime_UTR 45.0%
!!! ATTTTTTAAATTTCTAAAAA+TGG - chr5_2:2782011-2782030 Msa0749300:intron 5.0%
GATGCAGTCATGCAGGCATT+TGG + chr5_2:2781456-2781475 None:intergenic 50.0%
AGATTGAAAACGCAACGGCG+AGG - chr5_2:2781749-2781768 Msa0749300:intron 50.0%
!! TTTTGAGGAGGGACGGACAT+AGG + chr5_2:2782440-2782459 None:intergenic 50.0%
TGCCCTGTGCAATGTTCACA+TGG - chr5_2:2782594-2782613 Msa0749300:intron 50.0%
ACACACAAGTGGGGAATCTC+TGG + chr5_2:2782808-2782827 None:intergenic 50.0%
ATTTGCAGGCTCCCATATGC+CGG - chr5_2:2783637-2783656 Msa0749300:five_prime_UTR 50.0%
CATTCCTTCAGCCGGCATAT+GGG + chr5_2:2783651-2783670 None:intergenic 50.0%
ACATTCCTTCAGCCGGCATA+TGG + chr5_2:2783652-2783671 None:intergenic 50.0%
GACTGGGTGTGTTTGGATTG+AGG - chr5_2:2783678-2783697 Msa0749300:five_prime_UTR 50.0%
GATTGAGGGTTTAGGAAGGG+AGG - chr5_2:2783693-2783712 Msa0749300:five_prime_UTR 50.0%
GACGCGATGAGCTTTACGAG+TGG + chr5_2:2782499-2782518 None:intergenic 55.0%
TCTGCAGGGAAGGCAACTGA+TGG - chr5_2:2783094-2783113 Msa0749300:intron 55.0%
! GGCTCCCATATGCCGGCTGA+AGG - chr5_2:2783644-2783663 Msa0749300:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 2781209 2783867 2781209 ID=Msa0749300;Name=Msa0749300
chr5_2 mRNA 2781209 2783867 2781209 ID=Msa0749300-mRNA-1;Parent=Msa0749300;Name=Msa0749300-mRNA-1;_AED=0.08;_eAED=0.08;_QI=596|1|1|1|0.25|0.2|5|204|66
chr5_2 exon 2781209 2781431 2781209 ID=Msa0749300-mRNA-1:exon:890;Parent=Msa0749300-mRNA-1
chr5_2 exon 2781596 2781747 2781596 ID=Msa0749300-mRNA-1:exon:889;Parent=Msa0749300-mRNA-1
chr5_2 exon 2781934 2781975 2781934 ID=Msa0749300-mRNA-1:exon:888;Parent=Msa0749300-mRNA-1
chr5_2 exon 2783174 2783397 2783174 ID=Msa0749300-mRNA-1:exon:887;Parent=Msa0749300-mRNA-1
chr5_2 exon 2783508 2783867 2783508 ID=Msa0749300-mRNA-1:exon:886;Parent=Msa0749300-mRNA-1
chr5_2 five_prime_UTR 2783508 2783867 2783508 ID=Msa0749300-mRNA-1:five_prime_utr;Parent=Msa0749300-mRNA-1
chr5_2 five_prime_UTR 2783174 2783397 2783174 ID=Msa0749300-mRNA-1:five_prime_utr;Parent=Msa0749300-mRNA-1
chr5_2 five_prime_UTR 2781964 2781975 2781964 ID=Msa0749300-mRNA-1:five_prime_utr;Parent=Msa0749300-mRNA-1
chr5_2 CDS 2781934 2781963 2781934 ID=Msa0749300-mRNA-1:cds;Parent=Msa0749300-mRNA-1
chr5_2 CDS 2781596 2781747 2781596 ID=Msa0749300-mRNA-1:cds;Parent=Msa0749300-mRNA-1
chr5_2 CDS 2781413 2781431 2781413 ID=Msa0749300-mRNA-1:cds;Parent=Msa0749300-mRNA-1
chr5_2 three_prime_UTR 2781209 2781412 2781209 ID=Msa0749300-mRNA-1:three_prime_utr;Parent=Msa0749300-mRNA-1
Gene Sequence

>Msa0749300

ATGGAAGAGAACGACCGACTAAAGCAACATGTTGCGGGCATGATTAACGACAGAATGGTTGGAGGTGATGAATATGAGAATGTGGTTAATGAAGGTCAATCCTCAGAATCTGTCACCAACGTTTACAACTCCATTGGTCCTCCCCAAGATTATGAGAGTTCAGATACATCGCTCAAGTTGGGGCTCCCATATGCCGGCTGA
Protein sequence

>Msa0749300

MEENDRLKQHVAGMINDRMVGGDEYENVVNEGQSSESVTNVYNSIGPPQDYESSDTSLKLGLPYAG*