Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760580 | NP_001376403.1 | 98.246 | 513 | 9 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1039 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760580 | sp|A7TUE1|CCLOP_MEDTR | 98.246 | 513 | 9 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1039 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760580 | A0A396HRV5 | 98.246 | 513 | 9 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1039 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095940 | Msa0760580 | 0.801095 | 1.058167e-48 | -8.615850e-47 |
| Msa0637700 | Msa0760580 | 0.810619 | 1.053197e-50 | -8.615850e-47 |
| Msa0760580 | Msa0901290 | 0.824681 | 7.075697e-54 | -8.615850e-47 |
| Msa0760580 | Msa0909040 | 0.970225 | 2.703706e-131 | -8.615850e-47 |
| Msa0760580 | Msa1035050 | 0.806599 | 7.608737e-50 | -8.615850e-47 |
| Msa0760580 | Msa1107220 | 0.807669 | 4.514857e-50 | -8.615850e-47 |
| Msa0760580 | Msa1202800 | 0.818599 | 1.801874e-52 | -8.615850e-47 |
| Msa0760580 | Msa1399030 | 0.810578 | 1.075110e-50 | -8.615850e-47 |
| Msa0760580 | Msa1433040 | 0.802053 | 6.731579e-49 | -8.615850e-47 |
| Msa0218500 | Msa0760580 | 0.826021 | 3.409910e-54 | -8.615850e-47 |
| Msa0258260 | Msa0760580 | 0.812706 | 3.704673e-51 | -8.615850e-47 |
| Msa0297340 | Msa0760580 | 0.810958 | 8.898949e-51 | -8.615850e-47 |
| Msa0320170 | Msa0760580 | 0.814735 | 1.324332e-51 | -8.615850e-47 |
| Msa0345890 | Msa0760580 | 0.808905 | 2.461146e-50 | -8.615850e-47 |
| Msa0557240 | Msa0760580 | 0.813907 | 2.017603e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760580 | MtrunA17_Chr5g0409341 | 98.246 | 513 | 9 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1039 |
| Msa0760580 | MtrunA17_Chr8g0369511 | 52.490 | 522 | 150 | 11 | 1 | 513 | 1 | 433 | 4.84e-148 | 431 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 95 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATCTAGTAACTTGTTTC+TGG | 0.134219 | 5_2:+17120138 | Msa0760580:CDS |
| AAGCTGTTCCGCCTTGTATT+TGG | 0.236796 | 5_2:-17121278 | None:intergenic |
| TCTGTAACATCAGCTGTTTC+AGG | 0.276307 | 5_2:+17121887 | Msa0760580:CDS |
| TTAATTTATCTTTCATGAAT+AGG | 0.300235 | 5_2:+17122714 | Msa0760580:CDS |
| ACCACAAACTTTGTCTTAGA+TGG | 0.319686 | 5_2:+17121237 | Msa0760580:CDS |
| CTGCAGCTTCTTTCTCGACT+TGG | 0.326898 | 5_2:-17121059 | None:intergenic |
| GAGACATAAACGTGCCCTTT+TGG | 0.341588 | 5_2:-17120924 | None:intergenic |
| GACTACATCATTTACCTGAT+TGG | 0.341664 | 5_2:-17120018 | None:intergenic |
| AGGATTGGATTCTATGTTCA+TGG | 0.343637 | 5_2:+17120816 | Msa0760580:CDS |
| TCTTGTGTAAGTATGCTAAA+AGG | 0.372411 | 5_2:+17121009 | Msa0760580:CDS |
| AAGAGTTTGATTTGAATTGC+TGG | 0.390171 | 5_2:-17121376 | None:intergenic |
| ATACAAGGCGGAACAGCTTC+CGG | 0.393208 | 5_2:+17121282 | Msa0760580:CDS |
| GAAAGACTTCTATCAGAAAC+TGG | 0.395489 | 5_2:+17122921 | Msa0760580:CDS |
| TTCTCAAGCACCACAAGGAT+TGG | 0.396713 | 5_2:+17120801 | Msa0760580:CDS |
| TACCTTCAACACACATCAAT+TGG | 0.399412 | 5_2:+17120966 | Msa0760580:CDS |
| TTAAAGGCTGATTGTAAAAG+AGG | 0.401553 | 5_2:-17121117 | None:intergenic |
| CCTTTAATGAAGAAGAAAAC+TGG | 0.405991 | 5_2:+17121133 | Msa0760580:CDS |
| CAAAGTTTGTGGTTCCTTCA+AGG | 0.409467 | 5_2:-17121227 | None:intergenic |
| TGAAGACTTGGCAGATGAAA+AGG | 0.431976 | 5_2:+17122878 | Msa0760580:CDS |
| AGGAAAAGTTTAGAAAGATA+TGG | 0.432079 | 5_2:+17121863 | Msa0760580:CDS |
| TTCAAGGGTTTGCATGACTC+CGG | 0.434815 | 5_2:-17121211 | None:intergenic |
| TCTAAACCAGATGAGATTAC+TGG | 0.439426 | 5_2:-17121339 | None:intergenic |
| CATTGTTTCTGAGGAGGGTA+AGG | 0.441315 | 5_2:-17122975 | None:intergenic |
| TGCATATCTGAGGGAATTGT+TGG | 0.448622 | 5_2:-17122638 | None:intergenic |
| GCTGCACCAGTAATCTCATC+TGG | 0.450196 | 5_2:+17121333 | Msa0760580:CDS |
| GCACCTACCATGGAGATGTT+AGG | 0.459529 | 5_2:+17119164 | Msa0760580:CDS |
| GATTGCAATTCTCTATCAAC+AGG | 0.465552 | 5_2:-17120121 | None:intergenic |
| ACCATCTAAGACAAAGTTTG+TGG | 0.471378 | 5_2:-17121238 | None:intergenic |
| ACAGTGATGGAGAGTCCTAT+TGG | 0.472049 | 5_2:+17119134 | Msa0760580:CDS |
| GTGTGAGTTACCAAGCCAAA+AGG | 0.477688 | 5_2:+17120909 | Msa0760580:CDS |
| AGGTGTCAGAGAACAGATAA+TGG | 0.481125 | 5_2:+17121712 | Msa0760580:intron |
| AAACTCTTGGTGATAGCTCA+TGG | 0.483896 | 5_2:+17121391 | Msa0760580:CDS |
| AGCAATTCAAATCAAACTCT+TGG | 0.484525 | 5_2:+17121378 | Msa0760580:CDS |
| CAAAAGCTAGTAAACGTTCA+AGG | 0.486480 | 5_2:+17121162 | Msa0760580:CDS |
| GCTTCTTGTCATTCGTTGAT+CGG | 0.487672 | 5_2:-17120259 | None:intergenic |
| TAGTAACTTGTTTCTGGCCA+AGG | 0.489457 | 5_2:+17120144 | Msa0760580:CDS |
| AAAGTTTGTGGTTCCTTCAA+GGG | 0.489561 | 5_2:-17121226 | None:intergenic |
| GGAGTCATGCAAACCCTTGA+AGG | 0.495939 | 5_2:+17121213 | Msa0760580:CDS |
| GAGAAAGAAGCTGCAGAAGA+TGG | 0.498928 | 5_2:+17121066 | Msa0760580:CDS |
| AACCAATTGATGTGTGTTGA+AGG | 0.511759 | 5_2:-17120968 | None:intergenic |
| AGTCTTCATTCTGCTTCTGA+AGG | 0.513732 | 5_2:-17122863 | None:intergenic |
| GTAGGTGCCGACATACCAAT+AGG | 0.513953 | 5_2:-17119149 | None:intergenic |
| AGAGTTTGATTTGAATTGCT+GGG | 0.514038 | 5_2:-17121375 | None:intergenic |
| TCAAGGGTTTGCATGACTCC+GGG | 0.516129 | 5_2:-17121210 | None:intergenic |
| TGAACAAACAAAGCAGATAG+AGG | 0.517837 | 5_2:+17122839 | Msa0760580:CDS |
| TTCACTTTGAGAAGGTTCTC+CGG | 0.518740 | 5_2:-17121301 | None:intergenic |
| GAAGTCTTTCAATCTCTTCG+AGG | 0.521857 | 5_2:-17122908 | None:intergenic |
| TGTTCCGCCTTGTATTTGGT+TGG | 0.523382 | 5_2:-17121274 | None:intergenic |
| AGTGTTGAAATGGAAGGGAG+AGG | 0.523586 | 5_2:+17119065 | None:intergenic |
| ACTGATCAAGTCAACGATCC+CGG | 0.524606 | 5_2:+17121192 | Msa0760580:CDS |
| ATAGTGTTAGTATCATGCTC+AGG | 0.526596 | 5_2:-17120841 | None:intergenic |
| TACTACATTGTTTCTGAGGA+GGG | 0.529395 | 5_2:-17122980 | None:intergenic |
| TTTGAAAAGCTCTTCACTAT+CGG | 0.529699 | 5_2:-17119216 | None:intergenic |
| GTGATCGAACTTCTTTCTCA+AGG | 0.531323 | 5_2:-17122685 | None:intergenic |
| GGGATACAATTCATCAAGCA+TGG | 0.541005 | 5_2:+17119563 | Msa0760580:intron |
| GTTATTCTTGAAGACAGTGA+TGG | 0.545289 | 5_2:+17119121 | Msa0760580:CDS |
| CACATTGGTGTGGCTTCAGA+AGG | 0.545682 | 5_2:+17119925 | Msa0760580:CDS |
| TGTGAGTTACCAAGCCAAAA+GGG | 0.546561 | 5_2:+17120910 | Msa0760580:CDS |
| CAAGATAGCTTGCATATCTG+AGG | 0.548218 | 5_2:-17122648 | None:intergenic |
| GAAGGTAGACGAAGATGAGT+TGG | 0.548398 | 5_2:-17120950 | None:intergenic |
| GCAGAAGATTCACTTTGAGA+AGG | 0.550309 | 5_2:-17121309 | None:intergenic |
| TTTGAAGTGTTGAAATGGAA+GGG | 0.553605 | 5_2:+17119060 | None:intergenic |
| TGAGTACTACATTGTTTCTG+AGG | 0.568603 | 5_2:-17122984 | None:intergenic |
| CTTTGAAGTGTTGAAATGGA+AGG | 0.568694 | 5_2:+17119059 | None:intergenic |
| TTAACAGTCGTTTGTCGAAG+AGG | 0.571443 | 5_2:+17119589 | Msa0760580:CDS |
| TGGTATGTCGGCACCTACCA+TGG | 0.573087 | 5_2:+17119154 | Msa0760580:CDS |
| ATGCAGAATGGCTGAAGCAA+AGG | 0.574640 | 5_2:+17122601 | Msa0760580:intron |
| GGAGAGTCCTATTGGTATGT+CGG | 0.580657 | 5_2:+17119142 | Msa0760580:CDS |
| GTAGACGAAGATGAGTTGGA+TGG | 0.580937 | 5_2:-17120946 | None:intergenic |
| TCAGAAGCAGAATGAAGACT+TGG | 0.585409 | 5_2:+17122866 | Msa0760580:CDS |
| TAATCTGAAAGATGACAGAA+AGG | 0.588212 | 5_2:+17121736 | Msa0760580:CDS |
| TGACTTTGCAGATGGCAAGA+TGG | 0.588963 | 5_2:+17122450 | Msa0760580:intron |
| AATCAGACCAACCAAATACA+AGG | 0.592411 | 5_2:+17121267 | Msa0760580:CDS |
| TTGGTAACTCACACATGGAA+AGG | 0.598185 | 5_2:-17120900 | None:intergenic |
| CTTGAATCCTAACATCTCCA+TGG | 0.600847 | 5_2:-17119171 | None:intergenic |
| AATCCTAACATCTCCATGGT+AGG | 0.603571 | 5_2:-17119167 | None:intergenic |
| CATACCGCAATTCAGAAGAC+CGG | 0.607774 | 5_2:-17120281 | None:intergenic |
| GTACTACATTGTTTCTGAGG+AGG | 0.610030 | 5_2:-17122981 | None:intergenic |
| AAGATAGCTTGCATATCTGA+GGG | 0.612623 | 5_2:-17122647 | None:intergenic |
| TTGGCTTGGTAACTCACACA+TGG | 0.615019 | 5_2:-17120905 | None:intergenic |
| GTCTTTCAATCTCTTCGAGG+AGG | 0.616589 | 5_2:-17122905 | None:intergenic |
| GGATACAATTCATCAAGCAT+GGG | 0.621171 | 5_2:+17119564 | Msa0760580:CDS |
| AGCACTCAAAATAAAGTCAG+AGG | 0.625989 | 5_2:+17121429 | Msa0760580:CDS |
| CAAAATTCTCAAGCACCACA+AGG | 0.626007 | 5_2:+17120796 | Msa0760580:CDS |
| CTGGCTAACAAATGATCAAG+AGG | 0.627025 | 5_2:+17119241 | Msa0760580:CDS |
| TGATAGCTCATGGAAACAAG+TGG | 0.633280 | 5_2:+17121401 | Msa0760580:CDS |
| TCGTTGATCGGTAATAAACC+AGG | 0.637190 | 5_2:-17120247 | None:intergenic |
| AACATAGAATCCAATCCTTG+TGG | 0.641035 | 5_2:-17120811 | None:intergenic |
| GATAGCTCATGGAAACAAGT+GGG | 0.648553 | 5_2:+17121402 | Msa0760580:CDS |
| GAAGCCGGTCTTCTGAATTG+CGG | 0.650623 | 5_2:+17120277 | Msa0760580:CDS |
| ATCAACGAATGACAAGAAGC+CGG | 0.651414 | 5_2:+17120262 | Msa0760580:CDS |
| TCTGGTTTAGATGCATGTGA+AGG | 0.667054 | 5_2:+17121351 | Msa0760580:CDS |
| TAATCAGCAACACATTGGTG+TGG | 0.670125 | 5_2:+17119915 | Msa0760580:CDS |
| ATGTCTAATCAGCAACACAT+TGG | 0.675603 | 5_2:+17119910 | Msa0760580:CDS |
| CAGACCAACCAAATACAAGG+CGG | 0.786289 | 5_2:+17121270 | Msa0760580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACAGTAATTTATTTTATT+TGG | + | chr5_2:17120049-17120068 | Msa0760580:intron | 10.0% |
| !! | ATGATAAAAAATGAAAATCT+AGG | + | chr5_2:17119352-17119371 | Msa0760580:intron | 15.0% |
| !!! | TTATTTGTAAGATGATTTTA+TGG | + | chr5_2:17119415-17119434 | Msa0760580:intron | 15.0% |
| !!! | AACATTCTAAAGAATTAATT+AGG | + | chr5_2:17119663-17119682 | Msa0760580:intron | 15.0% |
| !! | TTTATACATAACAACTTATA+TGG | + | chr5_2:17120695-17120714 | Msa0760580:intron | 15.0% |
| !!! | AGTTCTTAAATTTTGAAAAA+AGG | + | chr5_2:17121564-17121583 | Msa0760580:intron | 15.0% |
| !!! | AATTTTGAAAAAAGGTAATA+TGG | + | chr5_2:17121572-17121591 | Msa0760580:intron | 15.0% |
| !!! | AATATTGACTAATAACTTTA+TGG | + | chr5_2:17121814-17121833 | Msa0760580:intron | 15.0% |
| !!! | ATATTGACTAATAACTTTAT+GGG | + | chr5_2:17121815-17121834 | Msa0760580:intron | 15.0% |
| !! | CATATAATCTTGAAAATAAA+TGG | - | chr5_2:17121916-17121935 | None:intergenic | 15.0% |
| !!! | CATTTATTTTCAAGATTATA+TGG | + | chr5_2:17121914-17121933 | Msa0760580:intron | 15.0% |
| !! | AAGCAATATTCATTAATAAA+GGG | + | chr5_2:17122318-17122337 | Msa0760580:intron | 15.0% |
| !! | TTAATTTATCTTTCATGAAT+AGG | + | chr5_2:17122714-17122733 | Msa0760580:CDS | 15.0% |
| !! | AAATATGAATTCTTTGACTA+TGG | + | chr5_2:17119450-17119469 | Msa0760580:intron | 20.0% |
| !! | TGTAATCATAAATGTAGAAA+AGG | - | chr5_2:17119505-17119524 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTACAACAAATGT+TGG | + | chr5_2:17119623-17119642 | Msa0760580:intron | 20.0% |
| !!! | ATCTTATTTGTATCTATAAG+TGG | + | chr5_2:17119760-17119779 | Msa0760580:intron | 20.0% |
| !!! | ATGTCTACAAAATAACTTTT+TGG | + | chr5_2:17119966-17119985 | Msa0760580:CDS | 20.0% |
| !! | TTCAATATTGTAACTTAGTT+TGG | + | chr5_2:17120079-17120098 | Msa0760580:intron | 20.0% |
| !! | TATGAAGATTTATTGAACTA+AGG | - | chr5_2:17120198-17120217 | None:intergenic | 20.0% |
| !!! | ATTTTACATGAATGTAACAA+AGG | - | chr5_2:17120440-17120459 | None:intergenic | 20.0% |
| !! | GAAATTAAATCAGTTCAATA+TGG | + | chr5_2:17121616-17121635 | Msa0760580:intron | 20.0% |
| !! | ATACATGTTATTATAAGAGT+AGG | - | chr5_2:17121770-17121789 | None:intergenic | 20.0% |
| !! | AGTTATTAGTCAATATTTCA+AGG | - | chr5_2:17121811-17121830 | None:intergenic | 20.0% |
| !!! | TATTGACTAATAACTTTATG+GGG | + | chr5_2:17121816-17121835 | Msa0760580:intron | 20.0% |
| !!! | GACGATAATTTTAGAAAATT+CGG | + | chr5_2:17122007-17122026 | Msa0760580:intron | 20.0% |
| !!! | ACGATAATTTTAGAAAATTC+GGG | + | chr5_2:17122008-17122027 | Msa0760580:intron | 20.0% |
| !! | GAAGCAATATTCATTAATAA+AGG | + | chr5_2:17122317-17122336 | Msa0760580:intron | 20.0% |
| !! | AGCAATATTCATTAATAAAG+GGG | + | chr5_2:17122319-17122338 | Msa0760580:intron | 20.0% |
| !!! | AACATACAATACAATTTTTC+AGG | + | chr5_2:17122808-17122827 | Msa0760580:intron | 20.0% |
| ! | CAAAGATACATCAAATTCAA+AGG | - | chr5_2:17119531-17119550 | None:intergenic | 25.0% |
| !! | TATCTTTGTTTCTTAAACCA+GGG | + | chr5_2:17119543-17119562 | Msa0760580:intron | 25.0% |
| ! | CATAAGTATTAATCAAGATG+TGG | + | chr5_2:17119716-17119735 | Msa0760580:intron | 25.0% |
| ! | TATGAAAATGAACAAGAATC+AGG | - | chr5_2:17119838-17119857 | None:intergenic | 25.0% |
| ! | AGTTTGATATTAACATACCT+TGG | - | chr5_2:17120164-17120183 | None:intergenic | 25.0% |
| !!! | GATTTTGAAGAGAATATACA+AGG | - | chr5_2:17120316-17120335 | None:intergenic | 25.0% |
| ! | AAATTGTTTGAGAAAACTTG+AGG | + | chr5_2:17120568-17120587 | Msa0760580:intron | 25.0% |
| !!! | TTTGTTTTCATAAGCTATTC+TGG | - | chr5_2:17120623-17120642 | None:intergenic | 25.0% |
| !! | GAAGAACTTGCAAATTTTAA+TGG | + | chr5_2:17120868-17120887 | Msa0760580:CDS | 25.0% |
| ! | TAACTAATGGTATATGACTA+TGG | + | chr5_2:17121457-17121476 | Msa0760580:intron | 25.0% |
| ! | TTGAAAAAAGGTAATATGGA+TGG | + | chr5_2:17121576-17121595 | Msa0760580:intron | 25.0% |
| ! | ATTGACTAATAACTTTATGG+GGG | + | chr5_2:17121817-17121836 | Msa0760580:intron | 25.0% |
| ! | AGGAAAAGTTTAGAAAGATA+TGG | + | chr5_2:17121863-17121882 | Msa0760580:CDS | 25.0% |
| ! | AAAATTATCGTCAAAAGCTT+CGG | - | chr5_2:17121999-17122018 | None:intergenic | 25.0% |
| ! | AGTTACAAGTATCTTAACAT+AGG | - | chr5_2:17122118-17122137 | None:intergenic | 25.0% |
| !! | ATTTTGCTAGTAACTTTATC+TGG | + | chr5_2:17122233-17122252 | Msa0760580:intron | 25.0% |
| !! | ACATGCTAGATTAAAAGTAT+TGG | + | chr5_2:17122343-17122362 | Msa0760580:intron | 25.0% |
| ! | GTTCTTATCTAATAATGCAT+TGG | + | chr5_2:17122549-17122568 | Msa0760580:intron | 25.0% |
| ! | GCATTACTATTTATCTTAGT+AGG | - | chr5_2:17122755-17122774 | None:intergenic | 25.0% |
| !!! | TACAATACAATTTTTCAGGA+AGG | + | chr5_2:17122812-17122831 | Msa0760580:intron | 25.0% |
| TTTGAAAAGCTCTTCACTAT+CGG | - | chr5_2:17119219-17119238 | None:intergenic | 30.0% | |
| GTTCTTCAACTTTATATCTC+TGG | + | chr5_2:17119293-17119312 | Msa0760580:intron | 30.0% | |
| !!! | CATTTTTTATCATAGTCAGC+TGG | - | chr5_2:17119345-17119364 | None:intergenic | 30.0% |
| ATGAAAAAGACTGAGATAGA+TGG | - | chr5_2:17119379-17119398 | None:intergenic | 30.0% | |
| TTGACTATGGAACTTGTAAT+TGG | + | chr5_2:17119463-17119482 | Msa0760580:intron | 30.0% | |
| ! | GTATCTTTGTTTCTTAAACC+AGG | + | chr5_2:17119542-17119561 | Msa0760580:intron | 30.0% |
| GTGAATTTCAAAAGTAACCT+TGG | + | chr5_2:17119685-17119704 | Msa0760580:intron | 30.0% | |
| ATACTTATGATAGAAAGCCA+AGG | - | chr5_2:17119705-17119724 | None:intergenic | 30.0% | |
| TGCAGTTACATGTTAAAACA+AGG | - | chr5_2:17119867-17119886 | None:intergenic | 30.0% | |
| ! | GTGATTTCAATTTTCCAATC+AGG | + | chr5_2:17120004-17120023 | Msa0760580:CDS | 30.0% |
| AGATGTTTCATTATCAATGC+AGG | + | chr5_2:17120224-17120243 | Msa0760580:intron | 30.0% | |
| CCTTATTACTCACAATAACA+AGG | - | chr5_2:17120498-17120517 | None:intergenic | 30.0% | |
| !! | CCTTGTTATTGTGAGTAATA+AGG | + | chr5_2:17120495-17120514 | Msa0760580:intron | 30.0% |
| TGTGAGTAATAAGGTATGTT+TGG | + | chr5_2:17120504-17120523 | Msa0760580:intron | 30.0% | |
| ! | TTAAGTTGTTTGTCCAAACA+TGG | + | chr5_2:17120729-17120748 | Msa0760580:intron | 30.0% |
| TCTTGTGTAAGTATGCTAAA+AGG | + | chr5_2:17121009-17121028 | Msa0760580:CDS | 30.0% | |
| TTAAAGGCTGATTGTAAAAG+AGG | - | chr5_2:17121120-17121139 | None:intergenic | 30.0% | |
| ! | CCAGTTTTCTTCTTCATTAA+AGG | - | chr5_2:17121136-17121155 | None:intergenic | 30.0% |
| CCTTTAATGAAGAAGAAAAC+TGG | + | chr5_2:17121133-17121152 | Msa0760580:CDS | 30.0% | |
| !! | AGAGTTTGATTTGAATTGCT+GGG | - | chr5_2:17121378-17121397 | None:intergenic | 30.0% |
| !! | AAGAGTTTGATTTGAATTGC+TGG | - | chr5_2:17121379-17121398 | None:intergenic | 30.0% |
| AGCAATTCAAATCAAACTCT+TGG | + | chr5_2:17121378-17121397 | Msa0760580:CDS | 30.0% | |
| ! | GTCAGAGGTATAATAACTAA+TGG | + | chr5_2:17121444-17121463 | Msa0760580:intron | 30.0% |
| !!! | CTAGTTTTGATTCACTTCTT+TGG | - | chr5_2:17121664-17121683 | None:intergenic | 30.0% |
| ! | GATTGTAATTATGCCTTTTG+TGG | + | chr5_2:17121683-17121702 | Msa0760580:intron | 30.0% |
| TAATCTGAAAGATGACAGAA+AGG | + | chr5_2:17121736-17121755 | Msa0760580:CDS | 30.0% | |
| !! | AAAATTCGGGTTCTATTTTC+CGG | + | chr5_2:17122021-17122040 | Msa0760580:intron | 30.0% |
| ! | GTCATTCACAATTATTTCTC+CGG | - | chr5_2:17122043-17122062 | None:intergenic | 30.0% |
| !!! | AGGATTTGTTGTCTTTTCTT+TGG | - | chr5_2:17122098-17122117 | None:intergenic | 30.0% |
| CATCAAATTATGTGCATAGA+AGG | - | chr5_2:17122402-17122421 | None:intergenic | 30.0% | |
| ! | GCAAAGTCATTTGGTTTAAA+AGG | - | chr5_2:17122439-17122458 | None:intergenic | 30.0% |
| AGATGGATAACACAAAAAAG+CGG | + | chr5_2:17122467-17122486 | Msa0760580:CDS | 30.0% | |
| ACTCTCTTAATCTGTTTGTA+AGG | - | chr5_2:17122527-17122546 | None:intergenic | 30.0% | |
| GTTATTCTTGAAGACAGTGA+TGG | + | chr5_2:17119121-17119140 | Msa0760580:CDS | 35.0% | |
| GGATACAATTCATCAAGCAT+GGG | + | chr5_2:17119564-17119583 | Msa0760580:CDS | 35.0% | |
| ATGTCTAATCAGCAACACAT+TGG | + | chr5_2:17119910-17119929 | Msa0760580:CDS | 35.0% | |
| GACTACATCATTTACCTGAT+TGG | - | chr5_2:17120021-17120040 | None:intergenic | 35.0% | |
| GATTGCAATTCTCTATCAAC+AGG | - | chr5_2:17120124-17120143 | None:intergenic | 35.0% | |
| !! | GCAATCTAGTAACTTGTTTC+TGG | + | chr5_2:17120138-17120157 | Msa0760580:CDS | 35.0% |
| TGAGCTAATATAGTAGTGCA+TGG | - | chr5_2:17120395-17120414 | None:intergenic | 35.0% | |
| GAAATAGAACTCTGAACTTC+AGG | - | chr5_2:17120476-17120495 | None:intergenic | 35.0% | |
| ! | AAGCTATTCTGGAGAACTTA+TGG | - | chr5_2:17120612-17120631 | None:intergenic | 35.0% |
| CTAACAGATTAAGCCATGTT+TGG | - | chr5_2:17120745-17120764 | None:intergenic | 35.0% | |
| CAAACATGGCTTAATCTGTT+AGG | + | chr5_2:17120743-17120762 | Msa0760580:intron | 35.0% | |
| AACATAGAATCCAATCCTTG+TGG | - | chr5_2:17120814-17120833 | None:intergenic | 35.0% | |
| AGGATTGGATTCTATGTTCA+TGG | + | chr5_2:17120816-17120835 | Msa0760580:CDS | 35.0% | |
| ATAGTGTTAGTATCATGCTC+AGG | - | chr5_2:17120844-17120863 | None:intergenic | 35.0% | |
| TACCTTCAACACACATCAAT+TGG | + | chr5_2:17120966-17120985 | Msa0760580:CDS | 35.0% | |
| AACCAATTGATGTGTGTTGA+AGG | - | chr5_2:17120971-17120990 | None:intergenic | 35.0% | |
| CAAAAGCTAGTAAACGTTCA+AGG | + | chr5_2:17121162-17121181 | Msa0760580:CDS | 35.0% | |
| AAAGTTTGTGGTTCCTTCAA+GGG | - | chr5_2:17121229-17121248 | None:intergenic | 35.0% | |
| ACCACAAACTTTGTCTTAGA+TGG | + | chr5_2:17121237-17121256 | Msa0760580:CDS | 35.0% | |
| ! | ACCATCTAAGACAAAGTTTG+TGG | - | chr5_2:17121241-17121260 | None:intergenic | 35.0% |
| AATCAGACCAACCAAATACA+AGG | + | chr5_2:17121267-17121286 | Msa0760580:CDS | 35.0% | |
| TCTAAACCAGATGAGATTAC+TGG | - | chr5_2:17121342-17121361 | None:intergenic | 35.0% | |
| AGCACTCAAAATAAAGTCAG+AGG | + | chr5_2:17121429-17121448 | Msa0760580:CDS | 35.0% | |
| TCTGCAATGAGCAATGATTT+AGG | - | chr5_2:17121497-17121516 | None:intergenic | 35.0% | |
| !!! | GTTTTGATTCACTTCTTTGG+TGG | - | chr5_2:17121661-17121680 | None:intergenic | 35.0% |
| TAACTTTATGGGGGTTAATC+TGG | + | chr5_2:17121826-17121845 | Msa0760580:intron | 35.0% | |
| ! | TGAAGCAAACATTGAGGTTT+TGG | + | chr5_2:17121950-17121969 | Msa0760580:intron | 35.0% |
| AAACCAAATGACTTTGCAGA+TGG | + | chr5_2:17122442-17122461 | Msa0760580:intron | 35.0% | |
| AATAACCATGTCATGCAGAA+TGG | + | chr5_2:17122589-17122608 | Msa0760580:intron | 35.0% | |
| ! | AAGATAGCTTGCATATCTGA+GGG | - | chr5_2:17122650-17122669 | None:intergenic | 35.0% |
| TGAACAAACAAAGCAGATAG+AGG | + | chr5_2:17122839-17122858 | Msa0760580:CDS | 35.0% | |
| GAAAGACTTCTATCAGAAAC+TGG | + | chr5_2:17122921-17122940 | Msa0760580:CDS | 35.0% | |
| !! | TACTACATTGTTTCTGAGGA+GGG | - | chr5_2:17122983-17123002 | None:intergenic | 35.0% |
| !! | TGAGTACTACATTGTTTCTG+AGG | - | chr5_2:17122987-17123006 | None:intergenic | 35.0% |
| AATCCTAACATCTCCATGGT+AGG | - | chr5_2:17119170-17119189 | None:intergenic | 40.0% | |
| CTTGAATCCTAACATCTCCA+TGG | - | chr5_2:17119174-17119193 | None:intergenic | 40.0% | |
| CTGGCTAACAAATGATCAAG+AGG | + | chr5_2:17119241-17119260 | Msa0760580:CDS | 40.0% | |
| TGCTTGATGAATTGTATCCC+TGG | - | chr5_2:17119563-17119582 | None:intergenic | 40.0% | |
| GGGATACAATTCATCAAGCA+TGG | + | chr5_2:17119563-17119582 | Msa0760580:intron | 40.0% | |
| TTAACAGTCGTTTGTCGAAG+AGG | + | chr5_2:17119589-17119608 | Msa0760580:CDS | 40.0% | |
| TAATCAGCAACACATTGGTG+TGG | + | chr5_2:17119915-17119934 | Msa0760580:CDS | 40.0% | |
| !! | TAGTAACTTGTTTCTGGCCA+AGG | + | chr5_2:17120144-17120163 | Msa0760580:CDS | 40.0% |
| TTTCATTATCAATGCAGGCC+TGG | + | chr5_2:17120229-17120248 | Msa0760580:intron | 40.0% | |
| TCGTTGATCGGTAATAAACC+AGG | - | chr5_2:17120250-17120269 | None:intergenic | 40.0% | |
| GCTTCTTGTCATTCGTTGAT+CGG | - | chr5_2:17120262-17120281 | None:intergenic | 40.0% | |
| ATCAACGAATGACAAGAAGC+CGG | + | chr5_2:17120262-17120281 | Msa0760580:CDS | 40.0% | |
| GCTAATATAGTAGTGCATGG+TGG | - | chr5_2:17120392-17120411 | None:intergenic | 40.0% | |
| CAAAATTCTCAAGCACCACA+AGG | + | chr5_2:17120796-17120815 | Msa0760580:CDS | 40.0% | |
| ! | TTGGTAACTCACACATGGAA+AGG | - | chr5_2:17120903-17120922 | None:intergenic | 40.0% |
| TGTGAGTTACCAAGCCAAAA+GGG | + | chr5_2:17120910-17120929 | Msa0760580:CDS | 40.0% | |
| CAAAGTTTGTGGTTCCTTCA+AGG | - | chr5_2:17121230-17121249 | None:intergenic | 40.0% | |
| ! | TTCACTTTGAGAAGGTTCTC+CGG | - | chr5_2:17121304-17121323 | None:intergenic | 40.0% |
| ! | GCAGAAGATTCACTTTGAGA+AGG | - | chr5_2:17121312-17121331 | None:intergenic | 40.0% |
| ! | TCTGGTTTAGATGCATGTGA+AGG | + | chr5_2:17121351-17121370 | Msa0760580:CDS | 40.0% |
| ! | AAACTCTTGGTGATAGCTCA+TGG | + | chr5_2:17121391-17121410 | Msa0760580:CDS | 40.0% |
| TGATAGCTCATGGAAACAAG+TGG | + | chr5_2:17121401-17121420 | Msa0760580:CDS | 40.0% | |
| GATAGCTCATGGAAACAAGT+GGG | + | chr5_2:17121402-17121421 | Msa0760580:CDS | 40.0% | |
| ! | TATGCCTTTTGTGGAAATGC+AGG | + | chr5_2:17121692-17121711 | Msa0760580:intron | 40.0% |
| AGGTGTCAGAGAACAGATAA+TGG | + | chr5_2:17121712-17121731 | Msa0760580:intron | 40.0% | |
| ! | ATCTGGCTTAAATTGTGCAG+AGG | + | chr5_2:17121843-17121862 | Msa0760580:intron | 40.0% |
| ! | TCTGTAACATCAGCTGTTTC+AGG | + | chr5_2:17121887-17121906 | Msa0760580:CDS | 40.0% |
| TTGCCATCTGCAAAGTCATT+TGG | - | chr5_2:17122448-17122467 | None:intergenic | 40.0% | |
| TGGATAACACAAAAAAGCGG+AGG | + | chr5_2:17122470-17122489 | Msa0760580:CDS | 40.0% | |
| GGATAACACAAAAAAGCGGA+GGG | + | chr5_2:17122471-17122490 | Msa0760580:CDS | 40.0% | |
| TGCATATCTGAGGGAATTGT+TGG | - | chr5_2:17122641-17122660 | None:intergenic | 40.0% | |
| ! | CAAGATAGCTTGCATATCTG+AGG | - | chr5_2:17122651-17122670 | None:intergenic | 40.0% |
| GTGATCGAACTTCTTTCTCA+AGG | - | chr5_2:17122688-17122707 | None:intergenic | 40.0% | |
| AGTCTTCATTCTGCTTCTGA+AGG | - | chr5_2:17122866-17122885 | None:intergenic | 40.0% | |
| TCAGAAGCAGAATGAAGACT+TGG | + | chr5_2:17122866-17122885 | Msa0760580:CDS | 40.0% | |
| TGAAGACTTGGCAGATGAAA+AGG | + | chr5_2:17122878-17122897 | Msa0760580:CDS | 40.0% | |
| GAAGTCTTTCAATCTCTTCG+AGG | - | chr5_2:17122911-17122930 | None:intergenic | 40.0% | |
| !! | GTACTACATTGTTTCTGAGG+AGG | - | chr5_2:17122984-17123003 | None:intergenic | 40.0% |
| ! | ATGGAAGGGAGAGGATTTTC+TGG | + | chr5_2:17119074-17119093 | Msa0760580:CDS | 45.0% |
| ! | ACAGTGATGGAGAGTCCTAT+TGG | + | chr5_2:17119134-17119153 | Msa0760580:CDS | 45.0% |
| GGAGAGTCCTATTGGTATGT+CGG | + | chr5_2:17119142-17119161 | Msa0760580:CDS | 45.0% | |
| ! | GTGAAGAGCTTTTCAAACGC+TGG | + | chr5_2:17119222-17119241 | Msa0760580:CDS | 45.0% |
| CATACCGCAATTCAGAAGAC+CGG | - | chr5_2:17120284-17120303 | None:intergenic | 45.0% | |
| TCAGTATACCTTCGTCTGCA+CGG | - | chr5_2:17120772-17120791 | None:intergenic | 45.0% | |
| TTCTCAAGCACCACAAGGAT+TGG | + | chr5_2:17120801-17120820 | Msa0760580:CDS | 45.0% | |
| !! | TTGGCTTGGTAACTCACACA+TGG | - | chr5_2:17120908-17120927 | None:intergenic | 45.0% |
| GTGTGAGTTACCAAGCCAAA+AGG | + | chr5_2:17120909-17120928 | Msa0760580:CDS | 45.0% | |
| !! | ATAAACGTGCCCTTTTGGCT+TGG | - | chr5_2:17120922-17120941 | None:intergenic | 45.0% |
| ! | GAGACATAAACGTGCCCTTT+TGG | - | chr5_2:17120927-17120946 | None:intergenic | 45.0% |
| ! | GTAGACGAAGATGAGTTGGA+TGG | - | chr5_2:17120949-17120968 | None:intergenic | 45.0% |
| GAAGGTAGACGAAGATGAGT+TGG | - | chr5_2:17120953-17120972 | None:intergenic | 45.0% | |
| GAGAAAGAAGCTGCAGAAGA+TGG | + | chr5_2:17121066-17121085 | Msa0760580:CDS | 45.0% | |
| ACTGATCAAGTCAACGATCC+CGG | + | chr5_2:17121192-17121211 | Msa0760580:CDS | 45.0% | |
| TTCAAGGGTTTGCATGACTC+CGG | - | chr5_2:17121214-17121233 | None:intergenic | 45.0% | |
| CAGACCAACCAAATACAAGG+CGG | + | chr5_2:17121270-17121289 | Msa0760580:CDS | 45.0% | |
| TGTTCCGCCTTGTATTTGGT+TGG | - | chr5_2:17121277-17121296 | None:intergenic | 45.0% | |
| AAGCTGTTCCGCCTTGTATT+TGG | - | chr5_2:17121281-17121300 | None:intergenic | 45.0% | |
| GACACCTGCATTTCCACAAA+AGG | - | chr5_2:17121699-17121718 | None:intergenic | 45.0% | |
| !! | GTGCTCTGAAGCAAACATTG+AGG | + | chr5_2:17121944-17121963 | Msa0760580:intron | 45.0% |
| TGACTTTGCAGATGGCAAGA+TGG | + | chr5_2:17122450-17122469 | Msa0760580:intron | 45.0% | |
| TAACACAAAAAAGCGGAGGG+TGG | + | chr5_2:17122474-17122493 | Msa0760580:CDS | 45.0% | |
| TTCAGCCATTCTGCATGACA+TGG | - | chr5_2:17122597-17122616 | None:intergenic | 45.0% | |
| ATGCAGAATGGCTGAAGCAA+AGG | + | chr5_2:17122601-17122620 | Msa0760580:intron | 45.0% | |
| GTCTTTCAATCTCTTCGAGG+AGG | - | chr5_2:17122908-17122927 | None:intergenic | 45.0% | |
| !! | CATTGTTTCTGAGGAGGGTA+AGG | - | chr5_2:17122978-17122997 | None:intergenic | 45.0% |
| !! | GTAGGTGCCGACATACCAAT+AGG | - | chr5_2:17119152-17119171 | None:intergenic | 50.0% |
| GCACCTACCATGGAGATGTT+AGG | + | chr5_2:17119164-17119183 | Msa0760580:CDS | 50.0% | |
| CACATTGGTGTGGCTTCAGA+AGG | + | chr5_2:17119925-17119944 | Msa0760580:CDS | 50.0% | |
| GAAGCCGGTCTTCTGAATTG+CGG | + | chr5_2:17120277-17120296 | Msa0760580:CDS | 50.0% | |
| CTGCAGCTTCTTTCTCGACT+TGG | - | chr5_2:17121062-17121081 | None:intergenic | 50.0% | |
| TCAAGGGTTTGCATGACTCC+GGG | - | chr5_2:17121213-17121232 | None:intergenic | 50.0% | |
| GGAGTCATGCAAACCCTTGA+AGG | + | chr5_2:17121213-17121232 | Msa0760580:CDS | 50.0% | |
| ATACAAGGCGGAACAGCTTC+CGG | + | chr5_2:17121282-17121301 | Msa0760580:CDS | 50.0% | |
| GCTGCACCAGTAATCTCATC+TGG | + | chr5_2:17121333-17121352 | Msa0760580:CDS | 50.0% | |
| TGGTATGTCGGCACCTACCA+TGG | + | chr5_2:17119154-17119173 | Msa0760580:CDS | 55.0% | |
| TTAGGCTTCCGTGCAGACGA+AGG | + | chr5_2:17120761-17120780 | Msa0760580:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 17119074 | 17123023 | 17119074 | ID=Msa0760580;Name=Msa0760580 |
| chr5_2 | mRNA | 17119074 | 17123023 | 17119074 | ID=Msa0760580-mRNA-1;Parent=Msa0760580;Name=Msa0760580-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.8|0.63|1|1|1|11|70|513 |
| chr5_2 | exon | 17119074 | 17119262 | 17119074 | ID=Msa0760580-mRNA-1:exon:7598;Parent=Msa0760580-mRNA-1 |
| chr5_2 | exon | 17119564 | 17119610 | 17119564 | ID=Msa0760580-mRNA-1:exon:7599;Parent=Msa0760580-mRNA-1 |
| chr5_2 | exon | 17119888 | 17120025 | 17119888 | ID=Msa0760580-mRNA-1:exon:7600;Parent=Msa0760580-mRNA-1 |
| chr5_2 | exon | 17120117 | 17120165 | 17120117 | ID=Msa0760580-mRNA-1:exon:7601;Parent=Msa0760580-mRNA-1 |
| chr5_2 | exon | 17120246 | 17120298 | 17120246 | ID=Msa0760580-mRNA-1:exon:7602;Parent=Msa0760580-mRNA-1 |
| chr5_2 | exon | 17120777 | 17121450 | 17120777 | ID=Msa0760580-mRNA-1:exon:7603;Parent=Msa0760580-mRNA-1 |
| chr5_2 | exon | 17121714 | 17121757 | 17121714 | ID=Msa0760580-mRNA-1:exon:7604;Parent=Msa0760580-mRNA-1 |
| chr5_2 | exon | 17121863 | 17121908 | 17121863 | ID=Msa0760580-mRNA-1:exon:7605;Parent=Msa0760580-mRNA-1 |
| chr5_2 | exon | 17122461 | 17122509 | 17122461 | ID=Msa0760580-mRNA-1:exon:7606;Parent=Msa0760580-mRNA-1 |
| chr5_2 | exon | 17122607 | 17122735 | 17122607 | ID=Msa0760580-mRNA-1:exon:7607;Parent=Msa0760580-mRNA-1 |
| chr5_2 | exon | 17122830 | 17123023 | 17122830 | ID=Msa0760580-mRNA-1:exon:7608;Parent=Msa0760580-mRNA-1 |
| chr5_2 | CDS | 17119074 | 17119262 | 17119074 | ID=Msa0760580-mRNA-1:cds;Parent=Msa0760580-mRNA-1 |
| chr5_2 | CDS | 17119564 | 17119610 | 17119564 | ID=Msa0760580-mRNA-1:cds;Parent=Msa0760580-mRNA-1 |
| chr5_2 | CDS | 17119888 | 17120025 | 17119888 | ID=Msa0760580-mRNA-1:cds;Parent=Msa0760580-mRNA-1 |
| chr5_2 | CDS | 17120117 | 17120165 | 17120117 | ID=Msa0760580-mRNA-1:cds;Parent=Msa0760580-mRNA-1 |
| chr5_2 | CDS | 17120246 | 17120298 | 17120246 | ID=Msa0760580-mRNA-1:cds;Parent=Msa0760580-mRNA-1 |
| chr5_2 | CDS | 17120777 | 17121450 | 17120777 | ID=Msa0760580-mRNA-1:cds;Parent=Msa0760580-mRNA-1 |
| chr5_2 | CDS | 17121714 | 17121757 | 17121714 | ID=Msa0760580-mRNA-1:cds;Parent=Msa0760580-mRNA-1 |
| chr5_2 | CDS | 17121863 | 17121908 | 17121863 | ID=Msa0760580-mRNA-1:cds;Parent=Msa0760580-mRNA-1 |
| chr5_2 | CDS | 17122461 | 17122509 | 17122461 | ID=Msa0760580-mRNA-1:cds;Parent=Msa0760580-mRNA-1 |
| chr5_2 | CDS | 17122607 | 17122735 | 17122607 | ID=Msa0760580-mRNA-1:cds;Parent=Msa0760580-mRNA-1 |
| chr5_2 | CDS | 17122830 | 17122953 | 17122830 | ID=Msa0760580-mRNA-1:cds;Parent=Msa0760580-mRNA-1 |
| chr5_2 | three_prime_UTR | 17122954 | 17123023 | 17122954 | ID=Msa0760580-mRNA-1:three_prime_utr;Parent=Msa0760580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
