Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0909040 | NP_001376403.1 | 98.246 | 513 | 9 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1039 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0909040 | sp|A7TUE1|CCLOP_MEDTR | 98.246 | 513 | 9 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1039 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0060690 | Msa0909040 | 0.800463 | 1.424688e-48 | -8.615850e-47 |
| Msa0095940 | Msa0909040 | 0.805468 | 1.315431e-49 | -8.615850e-47 |
| Msa0760580 | Msa0909040 | 0.970225 | 2.703706e-131 | -8.615850e-47 |
| Msa0218500 | Msa0909040 | 0.805250 | 1.461650e-49 | -8.615850e-47 |
| Msa0320170 | Msa0909040 | 0.817891 | 2.606177e-52 | -8.615850e-47 |
| Msa0345890 | Msa0909040 | 0.806283 | 8.867700e-50 | -8.615850e-47 |
| Msa0901270 | Msa0909040 | 0.800429 | 1.447386e-48 | -8.615850e-47 |
| Msa0901290 | Msa0909040 | 0.824745 | 6.835599e-54 | -8.615850e-47 |
| Msa0909040 | Msa1001120 | 0.802494 | 5.463235e-49 | -8.615850e-47 |
| Msa0909040 | Msa1034950 | 0.804088 | 2.555143e-49 | -8.615850e-47 |
| Msa0909040 | Msa1075010 | 0.801404 | 9.149584e-49 | -8.615850e-47 |
| Msa0909040 | Msa1202110 | 0.804309 | 2.298607e-49 | -8.615850e-47 |
| Msa0909040 | Msa1202800 | 0.806646 | 7.435600e-50 | -8.615850e-47 |
| Msa0909040 | Msa1254870 | 0.802101 | 6.583223e-49 | -8.615850e-47 |
| Msa0909040 | Msa1328430 | 0.802580 | 5.243867e-49 | -8.615850e-47 |
| Msa0909040 | Msa1404050 | 0.803037 | 4.219430e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0909040 | MtrunA17_Chr5g0409341 | 98.246 | 513 | 9 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1039 |
| Msa0909040 | MtrunA17_Chr8g0369511 | 52.490 | 522 | 150 | 11 | 1 | 513 | 1 | 433 | 4.84e-148 | 431 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 95 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATCTAGTAACTTGTTTC+TGG | 0.134219 | 6_2:-10116818 | Msa0909040:CDS |
| AAGCTGTTCCGCCTTGTATT+TGG | 0.236796 | 6_2:+10115678 | None:intergenic |
| TCTGTAACATCAGCTGTTTC+AGG | 0.276307 | 6_2:-10115069 | Msa0909040:intron |
| TTAATTTATCTTTCATGAAT+AGG | 0.300235 | 6_2:-10114242 | Msa0909040:intron |
| ACCACAAACTTTGTCTTAGA+TGG | 0.319686 | 6_2:-10115719 | Msa0909040:CDS |
| CTGCAGCTTCTTTCTCGACT+TGG | 0.326898 | 6_2:+10115897 | None:intergenic |
| GAGACATAAACGTGCCCTTT+TGG | 0.341588 | 6_2:+10116032 | None:intergenic |
| GACTACATCATTTACCTGAT+TGG | 0.341664 | 6_2:+10116938 | None:intergenic |
| AGGATTGGATTCTATGTTCA+TGG | 0.343637 | 6_2:-10116140 | Msa0909040:CDS |
| TCTTGTGTAAGTATGCTAAA+AGG | 0.372411 | 6_2:-10115947 | Msa0909040:CDS |
| AAGAGTTTGATTTGAATTGC+TGG | 0.390171 | 6_2:+10115580 | None:intergenic |
| ATACAAGGCGGAACAGCTTC+CGG | 0.393208 | 6_2:-10115674 | Msa0909040:CDS |
| GAAAGACTTCTATCAGAAAC+TGG | 0.395489 | 6_2:-10114035 | Msa0909040:CDS |
| TTCTCAAGCACCACAAGGAT+TGG | 0.396713 | 6_2:-10116155 | Msa0909040:CDS |
| TACCTTCAACACACATCAAT+TGG | 0.399412 | 6_2:-10115990 | Msa0909040:CDS |
| TTAAAGGCTGATTGTAAAAG+AGG | 0.401553 | 6_2:+10115839 | None:intergenic |
| CCTTTAATGAAGAAGAAAAC+TGG | 0.405991 | 6_2:-10115823 | Msa0909040:CDS |
| CAAAGTTTGTGGTTCCTTCA+AGG | 0.409467 | 6_2:+10115729 | None:intergenic |
| TGAAGACTTGGCAGATGAAA+AGG | 0.431976 | 6_2:-10114078 | Msa0909040:CDS |
| AGGAAAAGTTTAGAAAGATA+TGG | 0.432079 | 6_2:-10115093 | Msa0909040:CDS |
| TTCAAGGGTTTGCATGACTC+CGG | 0.434815 | 6_2:+10115745 | None:intergenic |
| TCTAAACCAGATGAGATTAC+TGG | 0.439426 | 6_2:+10115617 | None:intergenic |
| CATTGTTTCTGAGGAGGGTA+AGG | 0.441315 | 6_2:+10113981 | None:intergenic |
| TGCATATCTGAGGGAATTGT+TGG | 0.448622 | 6_2:+10114318 | None:intergenic |
| GCTGCACCAGTAATCTCATC+TGG | 0.450196 | 6_2:-10115623 | Msa0909040:CDS |
| GCACCTACCATGGAGATGTT+AGG | 0.459529 | 6_2:-10117792 | Msa0909040:CDS |
| GATTGCAATTCTCTATCAAC+AGG | 0.465552 | 6_2:+10116835 | None:intergenic |
| ACCATCTAAGACAAAGTTTG+TGG | 0.471378 | 6_2:+10115718 | None:intergenic |
| ACAGTGATGGAGAGTCCTAT+TGG | 0.472049 | 6_2:-10117822 | Msa0909040:CDS |
| GTGTGAGTTACCAAGCCAAA+AGG | 0.477688 | 6_2:-10116047 | Msa0909040:CDS |
| AGGTGTCAGAGAACAGATAA+TGG | 0.481125 | 6_2:-10115244 | Msa0909040:CDS |
| AAACTCTTGGTGATAGCTCA+TGG | 0.483896 | 6_2:-10115565 | Msa0909040:CDS |
| AGCAATTCAAATCAAACTCT+TGG | 0.484525 | 6_2:-10115578 | Msa0909040:CDS |
| CAAAAGCTAGTAAACGTTCA+AGG | 0.486480 | 6_2:-10115794 | Msa0909040:CDS |
| GCTTCTTGTCATTCGTTGAT+CGG | 0.487672 | 6_2:+10116697 | None:intergenic |
| TAGTAACTTGTTTCTGGCCA+AGG | 0.489457 | 6_2:-10116812 | Msa0909040:intron |
| AAAGTTTGTGGTTCCTTCAA+GGG | 0.489561 | 6_2:+10115730 | None:intergenic |
| GGAGTCATGCAAACCCTTGA+AGG | 0.495939 | 6_2:-10115743 | Msa0909040:CDS |
| GAGAAAGAAGCTGCAGAAGA+TGG | 0.498928 | 6_2:-10115890 | Msa0909040:CDS |
| AACCAATTGATGTGTGTTGA+AGG | 0.511759 | 6_2:+10115988 | None:intergenic |
| AGTCTTCATTCTGCTTCTGA+AGG | 0.513732 | 6_2:+10114093 | None:intergenic |
| GTAGGTGCCGACATACCAAT+AGG | 0.513953 | 6_2:+10117807 | None:intergenic |
| AGAGTTTGATTTGAATTGCT+GGG | 0.514038 | 6_2:+10115581 | None:intergenic |
| TCAAGGGTTTGCATGACTCC+GGG | 0.516129 | 6_2:+10115746 | None:intergenic |
| TGAACAAACAAAGCAGATAG+AGG | 0.517837 | 6_2:-10114117 | Msa0909040:CDS |
| TTCACTTTGAGAAGGTTCTC+CGG | 0.518740 | 6_2:+10115655 | None:intergenic |
| GAAGTCTTTCAATCTCTTCG+AGG | 0.521857 | 6_2:+10114048 | None:intergenic |
| TGTTCCGCCTTGTATTTGGT+TGG | 0.523382 | 6_2:+10115682 | None:intergenic |
| AGTGTTGAAATGGAAGGGAG+AGG | 0.523586 | 6_2:-10117891 | None:intergenic |
| ACTGATCAAGTCAACGATCC+CGG | 0.524606 | 6_2:-10115764 | Msa0909040:CDS |
| ATAGTGTTAGTATCATGCTC+AGG | 0.526596 | 6_2:+10116115 | None:intergenic |
| TACTACATTGTTTCTGAGGA+GGG | 0.529395 | 6_2:+10113976 | None:intergenic |
| TTTGAAAAGCTCTTCACTAT+CGG | 0.529699 | 6_2:+10117740 | None:intergenic |
| GTGATCGAACTTCTTTCTCA+AGG | 0.531323 | 6_2:+10114271 | None:intergenic |
| GGGATACAATTCATCAAGCA+TGG | 0.541005 | 6_2:-10117393 | Msa0909040:CDS |
| GTTATTCTTGAAGACAGTGA+TGG | 0.545289 | 6_2:-10117835 | Msa0909040:CDS |
| CACATTGGTGTGGCTTCAGA+AGG | 0.545682 | 6_2:-10117031 | Msa0909040:CDS |
| TGTGAGTTACCAAGCCAAAA+GGG | 0.546561 | 6_2:-10116046 | Msa0909040:CDS |
| CAAGATAGCTTGCATATCTG+AGG | 0.548218 | 6_2:+10114308 | None:intergenic |
| GAAGGTAGACGAAGATGAGT+TGG | 0.548398 | 6_2:+10116006 | None:intergenic |
| GCAGAAGATTCACTTTGAGA+AGG | 0.550309 | 6_2:+10115647 | None:intergenic |
| TTTGAAGTGTTGAAATGGAA+GGG | 0.553605 | 6_2:-10117896 | None:intergenic |
| TGAGTACTACATTGTTTCTG+AGG | 0.568603 | 6_2:+10113972 | None:intergenic |
| CTTTGAAGTGTTGAAATGGA+AGG | 0.568694 | 6_2:-10117897 | None:intergenic |
| TTAACAGTCGTTTGTCGAAG+AGG | 0.571443 | 6_2:-10117367 | Msa0909040:intron |
| TGGTATGTCGGCACCTACCA+TGG | 0.573087 | 6_2:-10117802 | Msa0909040:CDS |
| ATGCAGAATGGCTGAAGCAA+AGG | 0.574640 | 6_2:-10114355 | Msa0909040:intron |
| GGAGAGTCCTATTGGTATGT+CGG | 0.580657 | 6_2:-10117814 | Msa0909040:CDS |
| GTAGACGAAGATGAGTTGGA+TGG | 0.580937 | 6_2:+10116010 | None:intergenic |
| TCAGAAGCAGAATGAAGACT+TGG | 0.585409 | 6_2:-10114090 | Msa0909040:CDS |
| TAATCTGAAAGATGACAGAA+AGG | 0.588212 | 6_2:-10115220 | Msa0909040:intron |
| TGACTTTGCAGATGGCAAGA+TGG | 0.588963 | 6_2:-10114506 | Msa0909040:intron |
| AATCAGACCAACCAAATACA+AGG | 0.592411 | 6_2:-10115689 | Msa0909040:CDS |
| TTGGTAACTCACACATGGAA+AGG | 0.598185 | 6_2:+10116056 | None:intergenic |
| CTTGAATCCTAACATCTCCA+TGG | 0.600847 | 6_2:+10117785 | None:intergenic |
| AATCCTAACATCTCCATGGT+AGG | 0.603571 | 6_2:+10117789 | None:intergenic |
| CATACCGCAATTCAGAAGAC+CGG | 0.607774 | 6_2:+10116675 | None:intergenic |
| GTACTACATTGTTTCTGAGG+AGG | 0.610030 | 6_2:+10113975 | None:intergenic |
| AAGATAGCTTGCATATCTGA+GGG | 0.612623 | 6_2:+10114309 | None:intergenic |
| TTGGCTTGGTAACTCACACA+TGG | 0.615019 | 6_2:+10116051 | None:intergenic |
| GTCTTTCAATCTCTTCGAGG+AGG | 0.616589 | 6_2:+10114051 | None:intergenic |
| GGATACAATTCATCAAGCAT+GGG | 0.621171 | 6_2:-10117392 | Msa0909040:CDS |
| AGCACTCAAAATAAAGTCAG+AGG | 0.625989 | 6_2:-10115527 | Msa0909040:intron |
| CAAAATTCTCAAGCACCACA+AGG | 0.626007 | 6_2:-10116160 | Msa0909040:CDS |
| CTGGCTAACAAATGATCAAG+AGG | 0.627025 | 6_2:-10117715 | Msa0909040:intron |
| TGATAGCTCATGGAAACAAG+TGG | 0.633280 | 6_2:-10115555 | Msa0909040:CDS |
| TCGTTGATCGGTAATAAACC+AGG | 0.637190 | 6_2:+10116709 | None:intergenic |
| AACATAGAATCCAATCCTTG+TGG | 0.641035 | 6_2:+10116145 | None:intergenic |
| GATAGCTCATGGAAACAAGT+GGG | 0.648553 | 6_2:-10115554 | Msa0909040:CDS |
| GAAGCCGGTCTTCTGAATTG+CGG | 0.650623 | 6_2:-10116679 | Msa0909040:intron |
| ATCAACGAATGACAAGAAGC+CGG | 0.651414 | 6_2:-10116694 | Msa0909040:CDS |
| TCTGGTTTAGATGCATGTGA+AGG | 0.667054 | 6_2:-10115605 | Msa0909040:CDS |
| TAATCAGCAACACATTGGTG+TGG | 0.670125 | 6_2:-10117041 | Msa0909040:CDS |
| ATGTCTAATCAGCAACACAT+TGG | 0.675603 | 6_2:-10117046 | Msa0909040:CDS |
| CAGACCAACCAAATACAAGG+CGG | 0.786289 | 6_2:-10115686 | Msa0909040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACAGTAATTTATTTTATT+TGG | - | chr6_2:10114930-10114949 | Msa0909040:intron | 10.0% |
| !! | ATGATAAAAAATGAAAATCT+AGG | - | chr6_2:10114233-10114252 | Msa0909040:intron | 15.0% |
| !!! | TTATTTGTAAGATGATTTTA+TGG | - | chr6_2:10114296-10114315 | Msa0909040:CDS | 15.0% |
| !!! | AACATTCTAAAGAATTAATT+AGG | - | chr6_2:10114544-10114563 | Msa0909040:intron | 15.0% |
| !! | TTTATACATAACAACTTATA+TGG | - | chr6_2:10115576-10115595 | Msa0909040:CDS | 15.0% |
| !!! | AGTTCTTAAATTTTGAAAAA+AGG | - | chr6_2:10116445-10116464 | Msa0909040:intron | 15.0% |
| !!! | AATTTTGAAAAAAGGTAATA+TGG | - | chr6_2:10116453-10116472 | Msa0909040:intron | 15.0% |
| !!! | AATATTGACTAATAACTTTA+TGG | - | chr6_2:10116695-10116714 | Msa0909040:CDS | 15.0% |
| !!! | ATATTGACTAATAACTTTAT+GGG | - | chr6_2:10116696-10116715 | Msa0909040:CDS | 15.0% |
| !! | CATATAATCTTGAAAATAAA+TGG | + | chr6_2:10116797-10116816 | None:intergenic | 15.0% |
| !!! | CATTTATTTTCAAGATTATA+TGG | - | chr6_2:10116795-10116814 | Msa0909040:intron | 15.0% |
| !! | AAGCAATATTCATTAATAAA+GGG | - | chr6_2:10117199-10117218 | Msa0909040:intron | 15.0% |
| !! | TTAATTTATCTTTCATGAAT+AGG | - | chr6_2:10117595-10117614 | Msa0909040:intron | 15.0% |
| !! | AAATATGAATTCTTTGACTA+TGG | - | chr6_2:10114331-10114350 | Msa0909040:CDS | 20.0% |
| !! | TGTAATCATAAATGTAGAAA+AGG | + | chr6_2:10114386-10114405 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTACAACAAATGT+TGG | - | chr6_2:10114504-10114523 | Msa0909040:intron | 20.0% |
| !!! | ATCTTATTTGTATCTATAAG+TGG | - | chr6_2:10114641-10114660 | Msa0909040:intron | 20.0% |
| !!! | ATGTCTACAAAATAACTTTT+TGG | - | chr6_2:10114847-10114866 | Msa0909040:intron | 20.0% |
| !! | TTCAATATTGTAACTTAGTT+TGG | - | chr6_2:10114960-10114979 | Msa0909040:intron | 20.0% |
| !! | TATGAAGATTTATTGAACTA+AGG | + | chr6_2:10115079-10115098 | None:intergenic | 20.0% |
| !!! | ATTTTACATGAATGTAACAA+AGG | + | chr6_2:10115321-10115340 | None:intergenic | 20.0% |
| !! | GAAATTAAATCAGTTCAATA+TGG | - | chr6_2:10116497-10116516 | Msa0909040:intron | 20.0% |
| !! | ATACATGTTATTATAAGAGT+AGG | + | chr6_2:10116651-10116670 | None:intergenic | 20.0% |
| !! | AGTTATTAGTCAATATTTCA+AGG | + | chr6_2:10116692-10116711 | None:intergenic | 20.0% |
| !!! | TATTGACTAATAACTTTATG+GGG | - | chr6_2:10116697-10116716 | Msa0909040:CDS | 20.0% |
| !!! | GACGATAATTTTAGAAAATT+CGG | - | chr6_2:10116888-10116907 | Msa0909040:intron | 20.0% |
| !!! | ACGATAATTTTAGAAAATTC+GGG | - | chr6_2:10116889-10116908 | Msa0909040:intron | 20.0% |
| !! | GAAGCAATATTCATTAATAA+AGG | - | chr6_2:10117198-10117217 | Msa0909040:intron | 20.0% |
| !! | AGCAATATTCATTAATAAAG+GGG | - | chr6_2:10117200-10117219 | Msa0909040:intron | 20.0% |
| !!! | AACATACAATACAATTTTTC+AGG | - | chr6_2:10117689-10117708 | Msa0909040:intron | 20.0% |
| ! | CAAAGATACATCAAATTCAA+AGG | + | chr6_2:10114412-10114431 | None:intergenic | 25.0% |
| !! | TATCTTTGTTTCTTAAACCA+GGG | - | chr6_2:10114424-10114443 | Msa0909040:intron | 25.0% |
| ! | CATAAGTATTAATCAAGATG+TGG | - | chr6_2:10114597-10114616 | Msa0909040:intron | 25.0% |
| ! | TATGAAAATGAACAAGAATC+AGG | + | chr6_2:10114719-10114738 | None:intergenic | 25.0% |
| ! | AGTTTGATATTAACATACCT+TGG | + | chr6_2:10115045-10115064 | None:intergenic | 25.0% |
| !!! | GATTTTGAAGAGAATATACA+AGG | + | chr6_2:10115197-10115216 | None:intergenic | 25.0% |
| ! | AAATTGTTTGAGAAAACTTG+AGG | - | chr6_2:10115449-10115468 | Msa0909040:intron | 25.0% |
| !!! | TTTGTTTTCATAAGCTATTC+TGG | + | chr6_2:10115504-10115523 | None:intergenic | 25.0% |
| !! | GAAGAACTTGCAAATTTTAA+TGG | - | chr6_2:10115749-10115768 | Msa0909040:CDS | 25.0% |
| ! | TAACTAATGGTATATGACTA+TGG | - | chr6_2:10116338-10116357 | Msa0909040:intron | 25.0% |
| ! | TTGAAAAAAGGTAATATGGA+TGG | - | chr6_2:10116457-10116476 | Msa0909040:intron | 25.0% |
| ! | ATTGACTAATAACTTTATGG+GGG | - | chr6_2:10116698-10116717 | Msa0909040:CDS | 25.0% |
| ! | AGGAAAAGTTTAGAAAGATA+TGG | - | chr6_2:10116744-10116763 | Msa0909040:intron | 25.0% |
| ! | AAAATTATCGTCAAAAGCTT+CGG | + | chr6_2:10116880-10116899 | None:intergenic | 25.0% |
| ! | AGTTACAAGTATCTTAACAT+AGG | + | chr6_2:10116999-10117018 | None:intergenic | 25.0% |
| !! | ATTTTGCTAGTAACTTTATC+TGG | - | chr6_2:10117114-10117133 | Msa0909040:intron | 25.0% |
| !! | ACATGCTAGATTAAAAGTAT+TGG | - | chr6_2:10117224-10117243 | Msa0909040:intron | 25.0% |
| ! | GTTCTTATCTAATAATGCAT+TGG | - | chr6_2:10117430-10117449 | Msa0909040:intron | 25.0% |
| ! | GCATTACTATTTATCTTAGT+AGG | + | chr6_2:10117636-10117655 | None:intergenic | 25.0% |
| !!! | TACAATACAATTTTTCAGGA+AGG | - | chr6_2:10117693-10117712 | Msa0909040:intron | 25.0% |
| TTTGAAAAGCTCTTCACTAT+CGG | + | chr6_2:10114100-10114119 | None:intergenic | 30.0% | |
| GTTCTTCAACTTTATATCTC+TGG | - | chr6_2:10114174-10114193 | Msa0909040:intron | 30.0% | |
| !!! | CATTTTTTATCATAGTCAGC+TGG | + | chr6_2:10114226-10114245 | None:intergenic | 30.0% |
| ATGAAAAAGACTGAGATAGA+TGG | + | chr6_2:10114260-10114279 | None:intergenic | 30.0% | |
| TTGACTATGGAACTTGTAAT+TGG | - | chr6_2:10114344-10114363 | Msa0909040:CDS | 30.0% | |
| ! | GTATCTTTGTTTCTTAAACC+AGG | - | chr6_2:10114423-10114442 | Msa0909040:intron | 30.0% |
| GTGAATTTCAAAAGTAACCT+TGG | - | chr6_2:10114566-10114585 | Msa0909040:intron | 30.0% | |
| ATACTTATGATAGAAAGCCA+AGG | + | chr6_2:10114586-10114605 | None:intergenic | 30.0% | |
| TGCAGTTACATGTTAAAACA+AGG | + | chr6_2:10114748-10114767 | None:intergenic | 30.0% | |
| ! | GTGATTTCAATTTTCCAATC+AGG | - | chr6_2:10114885-10114904 | Msa0909040:intron | 30.0% |
| AGATGTTTCATTATCAATGC+AGG | - | chr6_2:10115105-10115124 | Msa0909040:intron | 30.0% | |
| CCTTATTACTCACAATAACA+AGG | + | chr6_2:10115379-10115398 | None:intergenic | 30.0% | |
| !! | CCTTGTTATTGTGAGTAATA+AGG | - | chr6_2:10115376-10115395 | Msa0909040:intron | 30.0% |
| TGTGAGTAATAAGGTATGTT+TGG | - | chr6_2:10115385-10115404 | Msa0909040:intron | 30.0% | |
| ! | TTAAGTTGTTTGTCCAAACA+TGG | - | chr6_2:10115610-10115629 | Msa0909040:CDS | 30.0% |
| TCTTGTGTAAGTATGCTAAA+AGG | - | chr6_2:10115890-10115909 | Msa0909040:CDS | 30.0% | |
| TTAAAGGCTGATTGTAAAAG+AGG | + | chr6_2:10116001-10116020 | None:intergenic | 30.0% | |
| ! | CCAGTTTTCTTCTTCATTAA+AGG | + | chr6_2:10116017-10116036 | None:intergenic | 30.0% |
| CCTTTAATGAAGAAGAAAAC+TGG | - | chr6_2:10116014-10116033 | Msa0909040:CDS | 30.0% | |
| !! | AGAGTTTGATTTGAATTGCT+GGG | + | chr6_2:10116259-10116278 | None:intergenic | 30.0% |
| !! | AAGAGTTTGATTTGAATTGC+TGG | + | chr6_2:10116260-10116279 | None:intergenic | 30.0% |
| AGCAATTCAAATCAAACTCT+TGG | - | chr6_2:10116259-10116278 | Msa0909040:intron | 30.0% | |
| ! | GTCAGAGGTATAATAACTAA+TGG | - | chr6_2:10116325-10116344 | Msa0909040:intron | 30.0% |
| !!! | CTAGTTTTGATTCACTTCTT+TGG | + | chr6_2:10116545-10116564 | None:intergenic | 30.0% |
| ! | GATTGTAATTATGCCTTTTG+TGG | - | chr6_2:10116564-10116583 | Msa0909040:intron | 30.0% |
| TAATCTGAAAGATGACAGAA+AGG | - | chr6_2:10116617-10116636 | Msa0909040:intron | 30.0% | |
| !! | AAAATTCGGGTTCTATTTTC+CGG | - | chr6_2:10116902-10116921 | Msa0909040:intron | 30.0% |
| ! | GTCATTCACAATTATTTCTC+CGG | + | chr6_2:10116924-10116943 | None:intergenic | 30.0% |
| !!! | AGGATTTGTTGTCTTTTCTT+TGG | + | chr6_2:10116979-10116998 | None:intergenic | 30.0% |
| CATCAAATTATGTGCATAGA+AGG | + | chr6_2:10117283-10117302 | None:intergenic | 30.0% | |
| ! | GCAAAGTCATTTGGTTTAAA+AGG | + | chr6_2:10117320-10117339 | None:intergenic | 30.0% |
| AGATGGATAACACAAAAAAG+CGG | - | chr6_2:10117348-10117367 | Msa0909040:intron | 30.0% | |
| ACTCTCTTAATCTGTTTGTA+AGG | + | chr6_2:10117408-10117427 | None:intergenic | 30.0% | |
| GTTATTCTTGAAGACAGTGA+TGG | - | chr6_2:10114002-10114021 | Msa0909040:three_prime_UTR | 35.0% | |
| GGATACAATTCATCAAGCAT+GGG | - | chr6_2:10114445-10114464 | Msa0909040:intron | 35.0% | |
| ATGTCTAATCAGCAACACAT+TGG | - | chr6_2:10114791-10114810 | Msa0909040:intron | 35.0% | |
| GACTACATCATTTACCTGAT+TGG | + | chr6_2:10114902-10114921 | None:intergenic | 35.0% | |
| GATTGCAATTCTCTATCAAC+AGG | + | chr6_2:10115005-10115024 | None:intergenic | 35.0% | |
| !! | GCAATCTAGTAACTTGTTTC+TGG | - | chr6_2:10115019-10115038 | Msa0909040:intron | 35.0% |
| TGAGCTAATATAGTAGTGCA+TGG | + | chr6_2:10115276-10115295 | None:intergenic | 35.0% | |
| GAAATAGAACTCTGAACTTC+AGG | + | chr6_2:10115357-10115376 | None:intergenic | 35.0% | |
| ! | AAGCTATTCTGGAGAACTTA+TGG | + | chr6_2:10115493-10115512 | None:intergenic | 35.0% |
| CTAACAGATTAAGCCATGTT+TGG | + | chr6_2:10115626-10115645 | None:intergenic | 35.0% | |
| CAAACATGGCTTAATCTGTT+AGG | - | chr6_2:10115624-10115643 | Msa0909040:CDS | 35.0% | |
| AACATAGAATCCAATCCTTG+TGG | + | chr6_2:10115695-10115714 | None:intergenic | 35.0% | |
| AGGATTGGATTCTATGTTCA+TGG | - | chr6_2:10115697-10115716 | Msa0909040:CDS | 35.0% | |
| ATAGTGTTAGTATCATGCTC+AGG | + | chr6_2:10115725-10115744 | None:intergenic | 35.0% | |
| TACCTTCAACACACATCAAT+TGG | - | chr6_2:10115847-10115866 | Msa0909040:CDS | 35.0% | |
| AACCAATTGATGTGTGTTGA+AGG | + | chr6_2:10115852-10115871 | None:intergenic | 35.0% | |
| CAAAAGCTAGTAAACGTTCA+AGG | - | chr6_2:10116043-10116062 | Msa0909040:CDS | 35.0% | |
| AAAGTTTGTGGTTCCTTCAA+GGG | + | chr6_2:10116110-10116129 | None:intergenic | 35.0% | |
| ACCACAAACTTTGTCTTAGA+TGG | - | chr6_2:10116118-10116137 | Msa0909040:CDS | 35.0% | |
| ! | ACCATCTAAGACAAAGTTTG+TGG | + | chr6_2:10116122-10116141 | None:intergenic | 35.0% |
| AATCAGACCAACCAAATACA+AGG | - | chr6_2:10116148-10116167 | Msa0909040:CDS | 35.0% | |
| TCTAAACCAGATGAGATTAC+TGG | + | chr6_2:10116223-10116242 | None:intergenic | 35.0% | |
| AGCACTCAAAATAAAGTCAG+AGG | - | chr6_2:10116310-10116329 | Msa0909040:intron | 35.0% | |
| TCTGCAATGAGCAATGATTT+AGG | + | chr6_2:10116378-10116397 | None:intergenic | 35.0% | |
| !!! | GTTTTGATTCACTTCTTTGG+TGG | + | chr6_2:10116542-10116561 | None:intergenic | 35.0% |
| TAACTTTATGGGGGTTAATC+TGG | - | chr6_2:10116707-10116726 | Msa0909040:CDS | 35.0% | |
| ! | TGAAGCAAACATTGAGGTTT+TGG | - | chr6_2:10116831-10116850 | Msa0909040:CDS | 35.0% |
| AAACCAAATGACTTTGCAGA+TGG | - | chr6_2:10117323-10117342 | Msa0909040:intron | 35.0% | |
| AATAACCATGTCATGCAGAA+TGG | - | chr6_2:10117470-10117489 | Msa0909040:intron | 35.0% | |
| ! | AAGATAGCTTGCATATCTGA+GGG | + | chr6_2:10117531-10117550 | None:intergenic | 35.0% |
| TGAACAAACAAAGCAGATAG+AGG | - | chr6_2:10117720-10117739 | Msa0909040:CDS | 35.0% | |
| GAAAGACTTCTATCAGAAAC+TGG | - | chr6_2:10117802-10117821 | Msa0909040:CDS | 35.0% | |
| !! | TACTACATTGTTTCTGAGGA+GGG | + | chr6_2:10117864-10117883 | None:intergenic | 35.0% |
| !! | TGAGTACTACATTGTTTCTG+AGG | + | chr6_2:10117868-10117887 | None:intergenic | 35.0% |
| AATCCTAACATCTCCATGGT+AGG | + | chr6_2:10114051-10114070 | None:intergenic | 40.0% | |
| CTTGAATCCTAACATCTCCA+TGG | + | chr6_2:10114055-10114074 | None:intergenic | 40.0% | |
| CTGGCTAACAAATGATCAAG+AGG | - | chr6_2:10114122-10114141 | Msa0909040:CDS | 40.0% | |
| TGCTTGATGAATTGTATCCC+TGG | + | chr6_2:10114444-10114463 | None:intergenic | 40.0% | |
| GGGATACAATTCATCAAGCA+TGG | - | chr6_2:10114444-10114463 | Msa0909040:intron | 40.0% | |
| TTAACAGTCGTTTGTCGAAG+AGG | - | chr6_2:10114470-10114489 | Msa0909040:CDS | 40.0% | |
| TAATCAGCAACACATTGGTG+TGG | - | chr6_2:10114796-10114815 | Msa0909040:intron | 40.0% | |
| !! | TAGTAACTTGTTTCTGGCCA+AGG | - | chr6_2:10115025-10115044 | Msa0909040:intron | 40.0% |
| TTTCATTATCAATGCAGGCC+TGG | - | chr6_2:10115110-10115129 | Msa0909040:intron | 40.0% | |
| TCGTTGATCGGTAATAAACC+AGG | + | chr6_2:10115131-10115150 | None:intergenic | 40.0% | |
| GCTTCTTGTCATTCGTTGAT+CGG | + | chr6_2:10115143-10115162 | None:intergenic | 40.0% | |
| ATCAACGAATGACAAGAAGC+CGG | - | chr6_2:10115143-10115162 | Msa0909040:intron | 40.0% | |
| GCTAATATAGTAGTGCATGG+TGG | + | chr6_2:10115273-10115292 | None:intergenic | 40.0% | |
| CAAAATTCTCAAGCACCACA+AGG | - | chr6_2:10115677-10115696 | Msa0909040:CDS | 40.0% | |
| ! | TTGGTAACTCACACATGGAA+AGG | + | chr6_2:10115784-10115803 | None:intergenic | 40.0% |
| TGTGAGTTACCAAGCCAAAA+GGG | - | chr6_2:10115791-10115810 | Msa0909040:CDS | 40.0% | |
| CAAAGTTTGTGGTTCCTTCA+AGG | + | chr6_2:10116111-10116130 | None:intergenic | 40.0% | |
| ! | TTCACTTTGAGAAGGTTCTC+CGG | + | chr6_2:10116185-10116204 | None:intergenic | 40.0% |
| ! | GCAGAAGATTCACTTTGAGA+AGG | + | chr6_2:10116193-10116212 | None:intergenic | 40.0% |
| ! | TCTGGTTTAGATGCATGTGA+AGG | - | chr6_2:10116232-10116251 | Msa0909040:intron | 40.0% |
| ! | AAACTCTTGGTGATAGCTCA+TGG | - | chr6_2:10116272-10116291 | Msa0909040:intron | 40.0% |
| TGATAGCTCATGGAAACAAG+TGG | - | chr6_2:10116282-10116301 | Msa0909040:intron | 40.0% | |
| GATAGCTCATGGAAACAAGT+GGG | - | chr6_2:10116283-10116302 | Msa0909040:intron | 40.0% | |
| ! | TATGCCTTTTGTGGAAATGC+AGG | - | chr6_2:10116573-10116592 | Msa0909040:intron | 40.0% |
| AGGTGTCAGAGAACAGATAA+TGG | - | chr6_2:10116593-10116612 | Msa0909040:intron | 40.0% | |
| ! | ATCTGGCTTAAATTGTGCAG+AGG | - | chr6_2:10116724-10116743 | Msa0909040:intron | 40.0% |
| ! | TCTGTAACATCAGCTGTTTC+AGG | - | chr6_2:10116768-10116787 | Msa0909040:intron | 40.0% |
| TTGCCATCTGCAAAGTCATT+TGG | + | chr6_2:10117329-10117348 | None:intergenic | 40.0% | |
| TGGATAACACAAAAAAGCGG+AGG | - | chr6_2:10117351-10117370 | Msa0909040:intron | 40.0% | |
| GGATAACACAAAAAAGCGGA+GGG | - | chr6_2:10117352-10117371 | Msa0909040:intron | 40.0% | |
| TGCATATCTGAGGGAATTGT+TGG | + | chr6_2:10117522-10117541 | None:intergenic | 40.0% | |
| ! | CAAGATAGCTTGCATATCTG+AGG | + | chr6_2:10117532-10117551 | None:intergenic | 40.0% |
| GTGATCGAACTTCTTTCTCA+AGG | + | chr6_2:10117569-10117588 | None:intergenic | 40.0% | |
| AGTCTTCATTCTGCTTCTGA+AGG | + | chr6_2:10117747-10117766 | None:intergenic | 40.0% | |
| TCAGAAGCAGAATGAAGACT+TGG | - | chr6_2:10117747-10117766 | Msa0909040:CDS | 40.0% | |
| TGAAGACTTGGCAGATGAAA+AGG | - | chr6_2:10117759-10117778 | Msa0909040:CDS | 40.0% | |
| GAAGTCTTTCAATCTCTTCG+AGG | + | chr6_2:10117792-10117811 | None:intergenic | 40.0% | |
| !! | GTACTACATTGTTTCTGAGG+AGG | + | chr6_2:10117865-10117884 | None:intergenic | 40.0% |
| ! | ATGGAAGGGAGAGGATTTTC+TGG | - | chr6_2:10113955-10113974 | Msa0909040:three_prime_UTR | 45.0% |
| ! | ACAGTGATGGAGAGTCCTAT+TGG | - | chr6_2:10114015-10114034 | Msa0909040:exon | 45.0% |
| GGAGAGTCCTATTGGTATGT+CGG | - | chr6_2:10114023-10114042 | Msa0909040:exon | 45.0% | |
| ! | GTGAAGAGCTTTTCAAACGC+TGG | - | chr6_2:10114103-10114122 | Msa0909040:CDS | 45.0% |
| CATACCGCAATTCAGAAGAC+CGG | + | chr6_2:10115165-10115184 | None:intergenic | 45.0% | |
| TCAGTATACCTTCGTCTGCA+CGG | + | chr6_2:10115653-10115672 | None:intergenic | 45.0% | |
| TTCTCAAGCACCACAAGGAT+TGG | - | chr6_2:10115682-10115701 | Msa0909040:CDS | 45.0% | |
| !! | TTGGCTTGGTAACTCACACA+TGG | + | chr6_2:10115789-10115808 | None:intergenic | 45.0% |
| GTGTGAGTTACCAAGCCAAA+AGG | - | chr6_2:10115790-10115809 | Msa0909040:CDS | 45.0% | |
| !! | ATAAACGTGCCCTTTTGGCT+TGG | + | chr6_2:10115803-10115822 | None:intergenic | 45.0% |
| ! | GAGACATAAACGTGCCCTTT+TGG | + | chr6_2:10115808-10115827 | None:intergenic | 45.0% |
| ! | GTAGACGAAGATGAGTTGGA+TGG | + | chr6_2:10115830-10115849 | None:intergenic | 45.0% |
| GAAGGTAGACGAAGATGAGT+TGG | + | chr6_2:10115834-10115853 | None:intergenic | 45.0% | |
| GAGAAAGAAGCTGCAGAAGA+TGG | - | chr6_2:10115947-10115966 | Msa0909040:CDS | 45.0% | |
| ACTGATCAAGTCAACGATCC+CGG | - | chr6_2:10116073-10116092 | Msa0909040:CDS | 45.0% | |
| TTCAAGGGTTTGCATGACTC+CGG | + | chr6_2:10116095-10116114 | None:intergenic | 45.0% | |
| CAGACCAACCAAATACAAGG+CGG | - | chr6_2:10116151-10116170 | Msa0909040:CDS | 45.0% | |
| TGTTCCGCCTTGTATTTGGT+TGG | + | chr6_2:10116158-10116177 | None:intergenic | 45.0% | |
| AAGCTGTTCCGCCTTGTATT+TGG | + | chr6_2:10116162-10116181 | None:intergenic | 45.0% | |
| GACACCTGCATTTCCACAAA+AGG | + | chr6_2:10116580-10116599 | None:intergenic | 45.0% | |
| !! | GTGCTCTGAAGCAAACATTG+AGG | - | chr6_2:10116825-10116844 | Msa0909040:CDS | 45.0% |
| TGACTTTGCAGATGGCAAGA+TGG | - | chr6_2:10117331-10117350 | Msa0909040:intron | 45.0% | |
| TAACACAAAAAAGCGGAGGG+TGG | - | chr6_2:10117355-10117374 | Msa0909040:intron | 45.0% | |
| TTCAGCCATTCTGCATGACA+TGG | + | chr6_2:10117478-10117497 | None:intergenic | 45.0% | |
| ATGCAGAATGGCTGAAGCAA+AGG | - | chr6_2:10117482-10117501 | Msa0909040:intron | 45.0% | |
| GTCTTTCAATCTCTTCGAGG+AGG | + | chr6_2:10117789-10117808 | None:intergenic | 45.0% | |
| !! | CATTGTTTCTGAGGAGGGTA+AGG | + | chr6_2:10117859-10117878 | None:intergenic | 45.0% |
| !! | GTAGGTGCCGACATACCAAT+AGG | + | chr6_2:10114033-10114052 | None:intergenic | 50.0% |
| GCACCTACCATGGAGATGTT+AGG | - | chr6_2:10114045-10114064 | Msa0909040:CDS | 50.0% | |
| CACATTGGTGTGGCTTCAGA+AGG | - | chr6_2:10114806-10114825 | Msa0909040:intron | 50.0% | |
| GAAGCCGGTCTTCTGAATTG+CGG | - | chr6_2:10115158-10115177 | Msa0909040:intron | 50.0% | |
| CTGCAGCTTCTTTCTCGACT+TGG | + | chr6_2:10115943-10115962 | None:intergenic | 50.0% | |
| TCAAGGGTTTGCATGACTCC+GGG | + | chr6_2:10116094-10116113 | None:intergenic | 50.0% | |
| GGAGTCATGCAAACCCTTGA+AGG | - | chr6_2:10116094-10116113 | Msa0909040:CDS | 50.0% | |
| ATACAAGGCGGAACAGCTTC+CGG | - | chr6_2:10116163-10116182 | Msa0909040:CDS | 50.0% | |
| GCTGCACCAGTAATCTCATC+TGG | - | chr6_2:10116214-10116233 | Msa0909040:intron | 50.0% | |
| TGGTATGTCGGCACCTACCA+TGG | - | chr6_2:10114035-10114054 | Msa0909040:CDS | 55.0% | |
| TTAGGCTTCCGTGCAGACGA+AGG | - | chr6_2:10115642-10115661 | Msa0909040:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 10113955 | 10117904 | 10113955 | ID=Msa0909040;Name=Msa0909040 |
| chr6_2 | mRNA | 10113955 | 10117904 | 10113955 | ID=Msa0909040-mRNA-1;Parent=Msa0909040;Name=Msa0909040-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.8|0.63|1|1|1|11|70|513 |
| chr6_2 | exon | 10113955 | 10114148 | 10113955 | ID=Msa0909040-mRNA-1:exon:2562;Parent=Msa0909040-mRNA-1 |
| chr6_2 | exon | 10114243 | 10114371 | 10114243 | ID=Msa0909040-mRNA-1:exon:2561;Parent=Msa0909040-mRNA-1 |
| chr6_2 | exon | 10114469 | 10114517 | 10114469 | ID=Msa0909040-mRNA-1:exon:2560;Parent=Msa0909040-mRNA-1 |
| chr6_2 | exon | 10115070 | 10115115 | 10115070 | ID=Msa0909040-mRNA-1:exon:2559;Parent=Msa0909040-mRNA-1 |
| chr6_2 | exon | 10115221 | 10115264 | 10115221 | ID=Msa0909040-mRNA-1:exon:2558;Parent=Msa0909040-mRNA-1 |
| chr6_2 | exon | 10115528 | 10116201 | 10115528 | ID=Msa0909040-mRNA-1:exon:2557;Parent=Msa0909040-mRNA-1 |
| chr6_2 | exon | 10116680 | 10116732 | 10116680 | ID=Msa0909040-mRNA-1:exon:2556;Parent=Msa0909040-mRNA-1 |
| chr6_2 | exon | 10116813 | 10116861 | 10116813 | ID=Msa0909040-mRNA-1:exon:2555;Parent=Msa0909040-mRNA-1 |
| chr6_2 | exon | 10116953 | 10117090 | 10116953 | ID=Msa0909040-mRNA-1:exon:2554;Parent=Msa0909040-mRNA-1 |
| chr6_2 | exon | 10117368 | 10117414 | 10117368 | ID=Msa0909040-mRNA-1:exon:2553;Parent=Msa0909040-mRNA-1 |
| chr6_2 | exon | 10117716 | 10117904 | 10117716 | ID=Msa0909040-mRNA-1:exon:2552;Parent=Msa0909040-mRNA-1 |
| chr6_2 | CDS | 10117716 | 10117904 | 10117716 | ID=Msa0909040-mRNA-1:cds;Parent=Msa0909040-mRNA-1 |
| chr6_2 | CDS | 10117368 | 10117414 | 10117368 | ID=Msa0909040-mRNA-1:cds;Parent=Msa0909040-mRNA-1 |
| chr6_2 | CDS | 10116953 | 10117090 | 10116953 | ID=Msa0909040-mRNA-1:cds;Parent=Msa0909040-mRNA-1 |
| chr6_2 | CDS | 10116813 | 10116861 | 10116813 | ID=Msa0909040-mRNA-1:cds;Parent=Msa0909040-mRNA-1 |
| chr6_2 | CDS | 10116680 | 10116732 | 10116680 | ID=Msa0909040-mRNA-1:cds;Parent=Msa0909040-mRNA-1 |
| chr6_2 | CDS | 10115528 | 10116201 | 10115528 | ID=Msa0909040-mRNA-1:cds;Parent=Msa0909040-mRNA-1 |
| chr6_2 | CDS | 10115221 | 10115264 | 10115221 | ID=Msa0909040-mRNA-1:cds;Parent=Msa0909040-mRNA-1 |
| chr6_2 | CDS | 10115070 | 10115115 | 10115070 | ID=Msa0909040-mRNA-1:cds;Parent=Msa0909040-mRNA-1 |
| chr6_2 | CDS | 10114469 | 10114517 | 10114469 | ID=Msa0909040-mRNA-1:cds;Parent=Msa0909040-mRNA-1 |
| chr6_2 | CDS | 10114243 | 10114371 | 10114243 | ID=Msa0909040-mRNA-1:cds;Parent=Msa0909040-mRNA-1 |
| chr6_2 | CDS | 10114025 | 10114148 | 10114025 | ID=Msa0909040-mRNA-1:cds;Parent=Msa0909040-mRNA-1 |
| chr6_2 | three_prime_UTR | 10113955 | 10114024 | 10113955 | ID=Msa0909040-mRNA-1:three_prime_utr;Parent=Msa0909040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
