AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1107220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1107220 MtrunA17_Chr7g0240541 86.937 222 29 0 80 301 3 224 3.27e-142 399
Msa1107220 MtrunA17_Chr7g0240551 85.586 222 32 0 80 301 3 224 1.57e-137 387
Msa1107220 MtrunA17_Chr7g0240531 84.685 222 34 0 80 301 3 224 3.10e-135 382
Msa1107220 MtrunA17_Chr7g0240581 74.324 222 57 0 80 301 3 224 8.89e-119 340
Msa1107220 MtrunA17_Chr7g0240561 75.455 220 54 0 82 301 5 224 1.25e-118 340
Msa1107220 MtrunA17_Chr7g0240511 74.775 222 51 1 80 301 3 219 3.15e-115 331
Msa1107220 MtrunA17_Chr7g0240521 73.543 223 58 1 80 301 10 232 2.29e-105 306
Msa1107220 MtrunA17_Chr7g0240641 66.210 219 74 0 82 300 5 223 6.97e-105 305
Msa1107220 MtrunA17_Chr7g0240631 64.840 219 77 0 82 300 5 223 4.52e-104 303
Msa1107220 MtrunA17_Chr7g0240681 66.516 221 73 1 82 301 5 225 8.84e-102 297
Msa1107220 MtrunA17_Chr7g0240611 66.197 213 68 1 83 295 6 214 7.85e-98 287
Msa1107220 MtrunA17_Chr4g0008791 62.559 211 79 0 84 294 7 217 2.13e-96 283
Msa1107220 MtrunA17_Chr7g0240691 62.100 219 82 1 83 300 36 254 2.86e-96 284
Msa1107220 MtrunA17_Chr4g0008781 59.908 217 85 2 77 292 1 216 5.18e-90 267
Msa1107220 MtrunA17_Chr7g0240671 62.319 207 74 1 85 291 5 207 7.84e-88 261
Msa1107220 MtrunA17_Chr7g0240651 61.682 214 78 1 80 293 3 212 1.67e-82 248
Msa1107220 MtrunA17_Chr7g0240661 62.264 212 76 1 80 291 3 210 2.62e-82 248
Msa1107220 MtrunA17_Chr6g0483141 48.558 208 105 2 84 290 3 209 3.64e-63 199
Msa1107220 MtrunA17_Chr1g0196771 46.262 214 110 3 83 293 2 213 2.23e-60 192
Msa1107220 MtrunA17_Chr3g0132581 46.154 221 117 2 81 300 2 221 1.40e-56 182
Msa1107220 MtrunA17_Chr8g0379581 44.393 214 117 2 83 295 4 216 2.81e-55 179
Msa1107220 MtrunA17_Chr5g0417011 43.519 216 114 3 84 292 7 221 6.43e-55 177
Msa1107220 MtrunA17_Chr1g0196691 42.727 220 123 1 84 300 28 247 3.13e-53 174
Msa1107220 MtrunA17_Chr4g0029341 42.857 217 116 5 81 292 1 214 2.12e-52 171
Msa1107220 MtrunA17_Chr8g0379561 42.466 219 124 2 83 300 5 222 2.40e-52 171
Msa1107220 MtrunA17_Chr1g0212301 41.743 218 124 2 84 298 3 220 1.01e-51 169
Msa1107220 MtrunA17_Chr1g0196661 42.105 209 117 2 84 289 3 210 2.72e-50 166
Msa1107220 MtrunA17_Chr8g0363751 41.818 220 120 3 81 292 2 221 2.65e-49 163
Msa1107220 MtrunA17_Chr1g0196721 41.553 219 124 2 85 300 3 220 4.10e-49 162
Msa1107220 MtrunA17_Chr3g0107731 42.029 207 115 4 93 297 18 221 7.26e-46 154
Msa1107220 MtrunA17_Chr5g0415411 40.553 217 121 2 84 292 5 221 7.96e-46 154
Msa1107220 MtrunA17_Chr1g0196711 39.524 210 123 2 84 290 3 211 7.02e-45 152
Msa1107220 MtrunA17_Chr3g0107741 40.909 220 118 6 74 289 2 213 4.80e-44 149
Msa1107220 MtrunA17_Chr2g0312771 39.698 199 115 4 93 289 13 208 1.17e-43 148
Msa1107220 MtrunA17_Chr2g0312731 40.385 208 119 5 81 286 1 205 1.56e-43 148
Msa1107220 MtrunA17_Chr2g0312751 37.915 211 126 4 81 289 1 208 3.71e-43 147
Msa1107220 MtrunA17_Chr4g0069471 45.455 187 94 5 80 263 21 202 1.03e-42 145
Msa1107220 MtrunA17_Chr2g0312791 39.806 206 120 3 81 284 1 204 2.19e-41 142
Msa1107220 MtrunA17_Chr2g0312781 37.321 209 126 4 80 286 17 222 1.62e-40 141
Msa1107220 MtrunA17_Chr2g0312721 36.967 211 128 4 81 289 1 208 9.89e-40 138
Msa1107220 MtrunA17_Chr8g0357211 38.942 208 119 5 93 295 13 217 1.21e-39 138
Msa1107220 MtrunA17_Chr8g0357241 38.942 208 119 5 93 295 13 217 1.51e-39 138
Msa1107220 MtrunA17_Chr2g0312811 40.187 214 119 7 81 289 1 210 1.53e-39 138
Msa1107220 MtrunA17_Chr5g0433801 38.318 214 125 5 79 289 1 210 9.22e-37 130
Msa1107220 MtrunA17_Chr8g0391631 46.795 156 73 4 84 230 21 175 9.57e-36 127
Msa1107220 MtrunA17_Chr2g0312691 36.967 211 128 4 81 289 1 208 4.59e-35 126
Msa1107220 MtrunA17_Chr2g0312681 35.545 211 131 4 81 289 1 208 8.05e-35 125
Msa1107220 MtrunA17_Chr2g0312711 37.438 203 121 4 81 281 1 199 3.84e-29 110
Msa1107220 MtrunA17_Chr2g0313561 46.154 65 34 1 128 191 2 66 4.36e-15 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1107220 AT3G09270.1 55.349 215 92 4 83 294 5 218 1.86e-75 230
Msa1107220 AT2G29420.1 45.872 218 114 3 80 295 5 220 3.58e-66 207
Msa1107220 AT2G29450.1 48.780 205 103 2 82 284 4 208 2.94e-57 184
Msa1107220 AT2G29490.1 47.549 204 104 3 83 284 6 208 9.02e-56 180
Msa1107220 AT2G29480.1 46.569 204 106 3 83 284 6 208 5.19e-53 173
Msa1107220 AT2G29440.1 46.078 204 107 3 83 284 5 207 5.87e-53 173
Msa1107220 AT2G29460.1 45.098 204 109 3 83 284 6 208 2.19e-51 169
Msa1107220 AT2G29470.1 44.390 205 110 4 83 284 6 209 6.92e-51 167
Msa1107220 AT1G59700.1 43.578 218 115 4 82 291 4 221 1.80e-47 159
Msa1107220 AT1G10370.1 39.070 215 124 2 84 291 5 219 1.19e-45 154
Msa1107220 AT5G62480.1 38.197 233 133 4 77 299 1 232 1.34e-45 154
Msa1107220 AT1G59670.1 39.732 224 126 4 82 297 4 226 2.24e-45 154
Msa1107220 AT1G78370.1 40.686 204 115 5 93 294 13 212 1.08e-44 151
Msa1107220 AT1G74590.1 38.785 214 124 3 82 289 5 217 2.78e-44 151
Msa1107220 AT1G78340.1 42.857 217 116 6 81 293 1 213 9.15e-44 149
Msa1107220 AT1G78320.1 40.670 209 119 4 81 287 1 206 3.58e-43 147
Msa1107220 AT1G17170.1 40.930 215 121 5 81 293 1 211 1.78e-42 145
Msa1107220 AT1G78380.1 42.308 208 115 5 84 289 4 208 1.89e-42 145
Msa1107220 AT1G69930.1 35.780 218 134 2 83 294 11 228 1.00e-41 144
Msa1107220 AT1G10360.1 36.111 216 131 2 83 291 4 219 1.02e-41 144
Msa1107220 AT1G27130.1 36.818 220 131 3 83 294 5 224 2.09e-41 143
Msa1107220 AT1G17180.1 40.845 213 117 6 81 289 1 208 5.70e-40 139
Msa1107220 AT1G27140.1 36.161 224 132 5 83 296 5 227 3.57e-38 135
Msa1107220 AT1G53680.1 39.024 205 120 4 85 286 8 210 1.63e-37 133
Msa1107220 AT1G69920.1 34.862 218 134 3 85 294 35 252 4.48e-37 133
Msa1107220 AT1G17190.1 42.697 178 97 4 93 268 14 188 5.52e-37 131
Msa1107220 AT1G78360.1 39.713 209 120 5 84 289 4 209 3.66e-36 129
Msa1107220 AT3G43800.1 40.097 207 111 9 83 281 4 205 3.38e-35 127
Msa1107220 AT5G62480.2 30.172 232 127 4 77 299 1 206 5.52e-27 105
Msa1107220 AT5G62480.3 30.172 232 126 4 77 299 1 205 5.74e-27 105
Msa1107220 AT1G78320.2 32.692 208 110 4 81 287 1 179 2.99e-25 100
Msa1107220 AT2G02380.1 26.977 215 138 6 82 284 9 216 2.52e-12 65.5

Find 55 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAGCCTTGGCTCGTTTC+TGG 0.120947 7_3:+48708304 Msa1107220:CDS
ATATGTACTTGTGATATTTA+AGG 0.143049 7_3:+48710010 Msa1107220:three_prime_UTR
TTCAGTATCTCAGGCACTTC+TGG 0.226887 7_3:-48704730 None:intergenic
TACCTTGTCATCTATGAAAT+TGG 0.247936 7_3:-48708328 None:intergenic
AATTTCCAAAGCTTTATAAT+TGG 0.263061 7_3:+48709860 Msa1107220:CDS
ACAGGAACTTTCTTATAAAC+AGG 0.283283 7_3:-48708180 None:intergenic
TTGGGTGGTTGTTGAATTCT+TGG 0.290435 7_3:-48709885 None:intergenic
GCAGCTTATGAGCTTCCTTT+TGG 0.306983 7_3:-48704614 None:intergenic
GAGCTCAAAGACAAATTCTT+TGG 0.309252 7_3:+48709736 Msa1107220:CDS
AAATATGAGAACGAAGAGTT+TGG 0.334423 7_3:+48708126 Msa1107220:CDS
TGGCTCCAATTATAAAGCTT+TGG 0.343224 7_3:-48709865 None:intergenic
TAAGGATCAGAAGGTAAGAT+AGG 0.374446 7_3:-48708279 None:intergenic
AGTTCAAATGCTTCTTGTAC+AGG 0.398599 7_3:-48709817 None:intergenic
GTGCCTGAGATACTGAAGTA+TGG 0.406541 7_3:+48704736 Msa1107220:CDS
CAACAACCACCCAATTGTTA+AGG 0.408785 7_3:+48709894 Msa1107220:CDS
GCCTCCAAGAGAGACCCTTT+TGG 0.422980 7_3:+48709924 Msa1107220:CDS
TGGTCAACCAGGGTGGAAAT+AGG 0.427757 7_3:+48708078 Msa1107220:CDS
TTCTTTGGTGGGGAGGAGAT+TGG 0.431190 7_3:+48709751 Msa1107220:CDS
TATCTCTATTGCTGCCCAAA+AGG 0.457748 7_3:+48704599 Msa1107220:CDS
AATATGAGAACGAAGAGTTT+GGG 0.460478 7_3:+48708127 Msa1107220:CDS
AGGAGTTGCATCAACAAATT+CGG 0.461671 7_3:-48704707 None:intergenic
ATACTGAAGTATGGACTTCA+AGG 0.465803 7_3:+48704745 Msa1107220:CDS
AACACGATGCATAAAGTGAA+TGG 0.484618 7_3:+48710114 Msa1107220:three_prime_UTR
AGAAGATATCAGAAAGTCAA+TGG 0.486348 7_3:+48704791 Msa1107220:CDS
AGTCCATACTTCAGTATCTC+AGG 0.487741 7_3:-48704739 None:intergenic
GTTCAAAATAGATCAATTGA+AGG 0.490056 7_3:+48709980 Msa1107220:exon
GCCAAAAGGGTCTCTCTTGG+AGG 0.494031 7_3:-48709925 None:intergenic
ATCACAAGTGACTCTGCTAT+AGG 0.496284 7_3:-48708222 None:intergenic
CTCAAAGACAAATTCTTTGG+TGG 0.503966 7_3:+48709739 Msa1107220:CDS
AATGCCAAAAGGGTCTCTCT+TGG 0.504098 7_3:-48709928 None:intergenic
TTGAGTATATTGATGAGACT+TGG 0.504629 7_3:+48708247 Msa1107220:CDS
GAGCTTTGTAGAATGCCAAA+AGG 0.508352 7_3:-48709939 None:intergenic
TGGGAAGTCCATGGTCAACC+AGG 0.514711 7_3:+48708067 Msa1107220:CDS
TCAAAGACAAATTCTTTGGT+GGG 0.523453 7_3:+48709740 Msa1107220:CDS
AGAACGTGAGAAGAGTATTG+AGG 0.526929 7_3:+48709681 Msa1107220:CDS
GGAAATAGGTCTAAAGTTGA+AGG 0.528369 7_3:+48708092 Msa1107220:CDS
CTCAGAAGTTGTCAAGAACA+TGG 0.539666 7_3:+48704639 Msa1107220:CDS
TTGGAATTGTGGGAAGTCCA+TGG 0.541617 7_3:+48708058 Msa1107220:CDS
TGATCCTTACAAAAGAGCCT+TGG 0.548089 7_3:+48708293 Msa1107220:CDS
ATCAAATAAGGAAGAGGTGA+AGG 0.549693 7_3:+48708032 Msa1107220:intron
CAGGAACTTTCTTATAAACA+GGG 0.557657 7_3:-48708179 None:intergenic
ATTTCCACCCTGGTTGACCA+TGG 0.559064 7_3:-48708075 None:intergenic
GAGTATTGAGGAAACAAAAG+AGG 0.559224 7_3:+48709693 Msa1107220:CDS
AGCTTTGTAGAATGCCAAAA+GGG 0.565015 7_3:-48709938 None:intergenic
CAAAGACAAATTCTTTGGTG+GGG 0.574827 7_3:+48709741 Msa1107220:CDS
AGACAAATTCTTTGGTGGGG+AGG 0.574875 7_3:+48709744 Msa1107220:CDS
ACCAGTATATGAATGATGTA+CGG 0.583480 7_3:+48709632 Msa1107220:intron
CTTTAGACCTATTTCCACCC+TGG 0.585281 7_3:-48708085 None:intergenic
ACTGAAATTGTTCACTAGTG+AGG 0.589749 7_3:+48709837 Msa1107220:CDS
GAAATAGGTCTAAAGTTGAA+GGG 0.606081 7_3:+48708093 Msa1107220:CDS
AGTATCTCAGGCACTTCTGG+AGG 0.626743 7_3:-48704727 None:intergenic
GACCAATTTCATAGATGACA+AGG 0.652027 7_3:+48708326 Msa1107220:CDS
GGGAAGTCCATGGTCAACCA+GGG 0.664739 7_3:+48708068 Msa1107220:CDS
ATTGGTCCAGAAACGAGCCA+AGG 0.674174 7_3:-48708310 None:intergenic
AAGTCCATGGTCAACCAGGG+TGG 0.678748 7_3:+48708071 Msa1107220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAATAATAATTAA+TGG - chr7_3:48707291-48707310 None:intergenic 0.0%
!!! ATTAATTATTATTTTTTTTA+TGG + chr7_3:48707290-48707309 Msa1107220:intron 0.0%
!!! TTTTTTTTAACAAATCAAAA+TGG - chr7_3:48706791-48706810 None:intergenic 10.0%
!!! TTTAGTTTACAATTTTTAAT+AGG + chr7_3:48707019-48707038 Msa1107220:intron 10.0%
!! AAAAAATAATAATTAATGGT+GGG - chr7_3:48707287-48707306 None:intergenic 10.0%
!! AAAAAAATAATAATTAATGG+TGG - chr7_3:48707288-48707307 None:intergenic 10.0%
!!! TATGTTATTTAACTTTTTAT+TGG + chr7_3:48707445-48707464 Msa1107220:intron 10.0%
!!! GCTTTTTTTTTTTTTTTTTA+AGG + chr7_3:48707478-48707497 Msa1107220:intron 10.0%
!!! TTTTTTTTTTTTTTAAGGAA+TGG + chr7_3:48707483-48707502 Msa1107220:intron 10.0%
!!! ATATATATATTAGTTTACTT+TGG + chr7_3:48707624-48707643 Msa1107220:intron 10.0%
!!! CATTAAATATGTTTTTTTTA+GGG + chr7_3:48708417-48708436 Msa1107220:intron 10.0%
!!! ATTAAATATGTTTTTTTTAG+GGG + chr7_3:48708418-48708437 Msa1107220:intron 10.0%
!!! ATTAAATTATGTTATTTGTT+AGG - chr7_3:48708464-48708483 None:intergenic 10.0%
!! AATCAAAAGAAAAATAATTT+GGG - chr7_3:48708709-48708728 None:intergenic 10.0%
!! AAATCAAAAGAAAAATAATT+TGG - chr7_3:48708710-48708729 None:intergenic 10.0%
!!! ATTTTAATGAAAAAATATGA+GGG - chr7_3:48708761-48708780 None:intergenic 10.0%
!!! AATTTTAATGAAAAAATATG+AGG - chr7_3:48708762-48708781 None:intergenic 10.0%
!! GAAAATAAAAATAAAAATGT+TGG + chr7_3:48709070-48709089 Msa1107220:intron 10.0%
!!! TTAATTAATTTGTTTTGTAT+AGG - chr7_3:48709535-48709554 None:intergenic 10.0%
!!! TAATCTTGTTTCTTATTTTT+TGG + chr7_3:48706655-48706674 Msa1107220:intron 15.0%
!!! TTTTTTTTAACAAGTAAAAG+TGG - chr7_3:48706818-48706837 None:intergenic 15.0%
!!! ATTGTCATACATTTTTTAAT+AGG + chr7_3:48706985-48707004 Msa1107220:intron 15.0%
!! GATCAATAAATGTTTATAAA+AGG + chr7_3:48707053-48707072 Msa1107220:intron 15.0%
!! AAAAATAATAATTAATGGTG+GGG - chr7_3:48707286-48707305 None:intergenic 15.0%
!!! GATTATTTTTCAACAAAAAA+CGG - chr7_3:48707927-48707946 None:intergenic 15.0%
!! TATATATAAAAGTAAATCCT+AGG + chr7_3:48707983-48708002 Msa1107220:intron 15.0%
!!! GCATTAAATATGTTTTTTTT+AGG + chr7_3:48708416-48708435 Msa1107220:intron 15.0%
!!! TAAGAATTTCTAAGATATGA+AGG - chr7_3:48705190-48705209 None:intergenic 20.0%
!! AAAAGAACTTCAAAAGTTTA+TGG - chr7_3:48706475-48706494 None:intergenic 20.0%
!! CAATAAATGTTTATAAAAGG+TGG + chr7_3:48707056-48707075 Msa1107220:intron 20.0%
!!! TATATATTAGTTTACTTTGG+CGG + chr7_3:48707627-48707646 Msa1107220:intron 20.0%
!!! GTTATATCACTTTTAATTTG+TGG - chr7_3:48707766-48707785 None:intergenic 20.0%
!! TTACTAATAAACACTTATTC+AGG - chr7_3:48707788-48707807 None:intergenic 20.0%
!!! TTACTTTTATATATAGAGCA+AGG - chr7_3:48707978-48707997 None:intergenic 20.0%
!! TATTTAATGCTAACTAAAGT+TGG - chr7_3:48708406-48708425 None:intergenic 20.0%
!!! TTTTATTTTCATAGGAAAGA+AGG - chr7_3:48709060-48709079 None:intergenic 20.0%
!! TATAAAAAATAACGAGTTTC+AGG - chr7_3:48709139-48709158 None:intergenic 20.0%
!!! TGAAACTCGTTATTTTTTAT+AGG + chr7_3:48709138-48709157 Msa1107220:intron 20.0%
!! ACATAAAAAACTCAAAAAAG+TGG - chr7_3:48709209-48709228 None:intergenic 20.0%
!! TCTAAGTTTGTATATGAATT+GGG - chr7_3:48709258-48709277 None:intergenic 20.0%
!! ATCTAAGTTTGTATATGAAT+TGG - chr7_3:48709259-48709278 None:intergenic 20.0%
!!! TTGAGTTTAAATTCAGTTTT+GGG + chr7_3:48709315-48709334 Msa1107220:intron 20.0%
!! ATAAAAAGAAGTTTAGAAGA+AGG - chr7_3:48709451-48709470 None:intergenic 20.0%
!!! TTAATAACTTCCTTAATTTG+TGG + chr7_3:48709608-48709627 Msa1107220:intron 20.0%
!!! TAATAACTTCCTTAATTTGT+GGG + chr7_3:48709609-48709628 Msa1107220:intron 20.0%
!!! AATTTCCAAAGCTTTATAAT+TGG + chr7_3:48709860-48709879 Msa1107220:CDS 20.0%
!! ATATGTACTTGTGATATTTA+AGG + chr7_3:48710010-48710029 Msa1107220:three_prime_UTR 20.0%
! ATTCATATTCATTCCTTCAT+AGG + chr7_3:48704956-48704975 Msa1107220:intron 25.0%
!! TCTTTTCAACCTCTATATAA+AGG + chr7_3:48705064-48705083 Msa1107220:intron 25.0%
!! AAATTCTTAAGTCTAGAGTA+TGG + chr7_3:48705201-48705220 Msa1107220:intron 25.0%
! AACACTTGATATAAAATCAG+AGG - chr7_3:48705248-48705267 None:intergenic 25.0%
!! CCAATCTAAGAAATTTTTGA+AGG - chr7_3:48705646-48705665 None:intergenic 25.0%
! CCTTCAAAAATTTCTTAGAT+TGG + chr7_3:48705643-48705662 Msa1107220:intron 25.0%
! CAAAAATTTCTTAGATTGGT+TGG + chr7_3:48705647-48705666 Msa1107220:intron 25.0%
!!! ATGGTGTAAATACTTTTTTC+TGG + chr7_3:48705953-48705972 Msa1107220:intron 25.0%
!! AGTCTAATTTTACAGATTAG+TGG + chr7_3:48706184-48706203 Msa1107220:intron 25.0%
!!! TATAAACACTTTAAGACTCT+TGG - chr7_3:48706272-48706291 None:intergenic 25.0%
! TTTATGGTCAAACAAACTAA+AGG - chr7_3:48706459-48706478 None:intergenic 25.0%
!! TGAAGCTTAATTCCTTTTTA+TGG + chr7_3:48706558-48706577 Msa1107220:intron 25.0%
!! AATTTTGTTCCAATTGCTTT+TGG + chr7_3:48706590-48706609 Msa1107220:intron 25.0%
!!! TCTTGTTTCTTATTTTTTGG+TGG + chr7_3:48706658-48706677 Msa1107220:intron 25.0%
!!! GTAACTAATTTTGGTGAATT+AGG - chr7_3:48706870-48706889 None:intergenic 25.0%
!! ATCTCACAAACCAATTTTAT+AGG + chr7_3:48707087-48707106 Msa1107220:intron 25.0%
!! ACCAATTTTATAGGTTCTAT+TGG + chr7_3:48707096-48707115 Msa1107220:intron 25.0%
! TCCAATAGAACCTATAAAAT+TGG - chr7_3:48707100-48707119 None:intergenic 25.0%
!!! GAATTTTTTCCAAAATTCGT+TGG + chr7_3:48707151-48707170 Msa1107220:intron 25.0%
!!! ACATTTTGAGAAGGAAAATA+GGG - chr7_3:48707366-48707385 None:intergenic 25.0%
!!! AACATTTTGAGAAGGAAAAT+AGG - chr7_3:48707367-48707386 None:intergenic 25.0%
!!! GATAGTAAAACATTTTGAGA+AGG - chr7_3:48707375-48707394 None:intergenic 25.0%
! GATTATTCTGTTTGAGTATT+AGG - chr7_3:48707956-48707975 None:intergenic 25.0%
!!! TTTTTTTTAGGGGATTGTTA+GGG + chr7_3:48708428-48708447 Msa1107220:intron 25.0%
! TGATTTATGACAAAAACCTT+TGG + chr7_3:48709028-48709047 Msa1107220:intron 25.0%
! AATAAAAATGTTGGCATTAG+TGG + chr7_3:48709079-48709098 Msa1107220:intron 25.0%
! ATAAAAATGTTGGCATTAGT+GGG + chr7_3:48709080-48709099 Msa1107220:intron 25.0%
! CAAACTTAGATGAGATTATT+CGG + chr7_3:48709268-48709287 Msa1107220:intron 25.0%
! AAACTTAGATGAGATTATTC+GGG + chr7_3:48709269-48709288 Msa1107220:intron 25.0%
!! GTTGAGTTTAAATTCAGTTT+TGG + chr7_3:48709314-48709333 Msa1107220:intron 25.0%
!! GCAATTTTTCCTTAACAATT+GGG - chr7_3:48709906-48709925 None:intergenic 25.0%
! GTTCAAAATAGATCAATTGA+AGG + chr7_3:48709980-48709999 Msa1107220:exon 25.0%
!!! TTATGCATCGTGTTTTTTTT+AGG - chr7_3:48710108-48710127 None:intergenic 25.0%
AGAAGATATCAGAAAGTCAA+TGG + chr7_3:48704791-48704810 Msa1107220:CDS 30.0%
!!! ATGGATGTCATTTTCAGTAA+AGG + chr7_3:48704810-48704829 Msa1107220:CDS 30.0%
! TTTCAGTAAAGGTACAAAGA+AGG + chr7_3:48704821-48704840 Msa1107220:intron 30.0%
GTTAATTCCTTAACAAGGAA+AGG + chr7_3:48704933-48704952 Msa1107220:intron 30.0%
TATGAATCCTTTCCTTGTTA+AGG - chr7_3:48704943-48704962 None:intergenic 30.0%
! ATTTGGTTGATATCCTATGA+AGG - chr7_3:48704972-48704991 None:intergenic 30.0%
!! CATTGATTTGTTGCTAGATT+TGG - chr7_3:48704989-48705008 None:intergenic 30.0%
GTCTTCAATCCTTTATATAG+AGG - chr7_3:48705076-48705095 None:intergenic 30.0%
!! CTCTGCAATATTTTTACAAG+TGG + chr7_3:48705113-48705132 Msa1107220:intron 30.0%
AAAATCTCTTGTAAGTGACA+AGG + chr7_3:48705389-48705408 Msa1107220:intron 30.0%
AAATCTCTTGTAAGTGACAA+GGG + chr7_3:48705390-48705409 Msa1107220:intron 30.0%
GAGTTTAACACTACTTTGTT+AGG + chr7_3:48705724-48705743 Msa1107220:intron 30.0%
ACACTACTTTGTTAGGTAAA+TGG + chr7_3:48705731-48705750 Msa1107220:intron 30.0%
! GAATAAGTTGAGTACAATAG+CGG + chr7_3:48706041-48706060 Msa1107220:intron 30.0%
! ATTTTACAGATTAGTGGTAG+TGG + chr7_3:48706190-48706209 Msa1107220:intron 30.0%
AGCCAAAATAGAAACATTCA+GGG - chr7_3:48706329-48706348 None:intergenic 30.0%
AAGCCAAAATAGAAACATTC+AGG - chr7_3:48706330-48706349 None:intergenic 30.0%
GTTGCCAAATTATCTTTAGT+CGG - chr7_3:48706376-48706395 None:intergenic 30.0%
TTCATGACTCTCAAATTGTA+TGG + chr7_3:48706409-48706428 Msa1107220:intron 30.0%
TCATGACTCTCAAATTGTAT+GGG + chr7_3:48706410-48706429 Msa1107220:intron 30.0%
ACTATTTCAAGAATGTTGTG+AGG - chr7_3:48706539-48706558 None:intergenic 30.0%
ATTCGAAGAAAGCCATAAAA+AGG - chr7_3:48706573-48706592 None:intergenic 30.0%
!!! TGTTTCTTATTTTTTGGTGG+AGG + chr7_3:48706661-48706680 Msa1107220:intron 30.0%
CAATATCTGTTACAAGAACA+TGG - chr7_3:48706704-48706723 None:intergenic 30.0%
ACCAAAATTAGTTACGTGTA+AGG + chr7_3:48706875-48706894 Msa1107220:intron 30.0%
! TCCTTACACGTAACTAATTT+TGG - chr7_3:48706879-48706898 None:intergenic 30.0%
AGGATTAAAACTCTTACGTT+TGG + chr7_3:48706895-48706914 Msa1107220:intron 30.0%
ATGTACACAAAGTGATGTAA+GGG - chr7_3:48706961-48706980 None:intergenic 30.0%
AATGTACACAAAGTGATGTA+AGG - chr7_3:48706962-48706981 None:intergenic 30.0%
! ATAATAATTAATGGTGGGGT+GGG - chr7_3:48707282-48707301 None:intergenic 30.0%
! AATAATAATTAATGGTGGGG+TGG - chr7_3:48707283-48707302 None:intergenic 30.0%
! ACAGTTTTCACTTCATAAAC+CGG + chr7_3:48707809-48707828 Msa1107220:intron 30.0%
AAAATATAACGCCACAAAAC+CGG - chr7_3:48707831-48707850 None:intergenic 30.0%
! GAAATAGGTCTAAAGTTGAA+GGG + chr7_3:48708093-48708112 Msa1107220:CDS 30.0%
AAATATGAGAACGAAGAGTT+TGG + chr7_3:48708126-48708145 Msa1107220:CDS 30.0%
AATATGAGAACGAAGAGTTT+GGG + chr7_3:48708127-48708146 Msa1107220:CDS 30.0%
CAGGAACTTTCTTATAAACA+GGG - chr7_3:48708182-48708201 None:intergenic 30.0%
ACAGGAACTTTCTTATAAAC+AGG - chr7_3:48708183-48708202 None:intergenic 30.0%
!!! GTTCCTGTTTTTGTTCATAA+TGG + chr7_3:48708195-48708214 Msa1107220:CDS 30.0%
TTGCCATTATGAACAAAAAC+AGG - chr7_3:48708201-48708220 None:intergenic 30.0%
TTGAGTATATTGATGAGACT+TGG + chr7_3:48708247-48708266 Msa1107220:CDS 30.0%
TACCTTGTCATCTATGAAAT+TGG - chr7_3:48708331-48708350 None:intergenic 30.0%
ACACACACAAAAATTGAAGA+GGG - chr7_3:48708362-48708381 None:intergenic 30.0%
TACACACACAAAAATTGAAG+AGG - chr7_3:48708363-48708382 None:intergenic 30.0%
!!! GTTTTTTTTAGGGGATTGTT+AGG + chr7_3:48708427-48708446 Msa1107220:intron 30.0%
!!! TTTTTTTAGGGGATTGTTAG+GGG + chr7_3:48708429-48708448 Msa1107220:intron 30.0%
CACAATATCCTATACGATTA+TGG - chr7_3:48708593-48708612 None:intergenic 30.0%
CATAATCGTATAGGATATTG+TGG + chr7_3:48708591-48708610 Msa1107220:intron 30.0%
! TGTGATACTATTGACTAGTT+TGG + chr7_3:48708638-48708657 Msa1107220:intron 30.0%
! AGAATGTCTTGTGTCAATTT+TGG + chr7_3:48708995-48709014 Msa1107220:intron 30.0%
! TTTTTATGTGAGTTTAACCG+TGG + chr7_3:48709220-48709239 Msa1107220:intron 30.0%
GGTCTTTCCTATTATAATCA+AGG + chr7_3:48709290-48709309 Msa1107220:intron 30.0%
CTCAACACCTTGATTATAAT+AGG - chr7_3:48709300-48709319 None:intergenic 30.0%
TTTGTATAGGAAGTCTTCTA+TGG - chr7_3:48709522-48709541 None:intergenic 30.0%
ACCAGTATATGAATGATGTA+CGG + chr7_3:48709632-48709651 Msa1107220:intron 30.0%
TCAAAGACAAATTCTTTGGT+GGG + chr7_3:48709740-48709759 Msa1107220:CDS 30.0%
! ATTTTTCCTTAACAATTGGG+TGG - chr7_3:48709903-48709922 None:intergenic 30.0%
! GGCAATTTTTCCTTAACAAT+TGG - chr7_3:48709907-48709926 None:intergenic 30.0%
AGGAGTTGCATCAACAAATT+CGG - chr7_3:48704710-48704729 None:intergenic 35.0%
ATACTGAAGTATGGACTTCA+AGG + chr7_3:48704745-48704764 Msa1107220:CDS 35.0%
AATGCACATGAGAATGTTGA+AGG - chr7_3:48704875-48704894 None:intergenic 35.0%
AGCTACATATGTGTCTCTAT+TGG + chr7_3:48704901-48704920 Msa1107220:intron 35.0%
GTGTCTCTATTGGAAAAGAA+CGG + chr7_3:48704911-48704930 Msa1107220:intron 35.0%
GAACGGTTAATTCCTTAACA+AGG + chr7_3:48704928-48704947 Msa1107220:intron 35.0%
AATCTCTTGTAAGTGACAAG+GGG + chr7_3:48705391-48705410 Msa1107220:intron 35.0%
AGAGACACAAGCAATTTATC+CGG - chr7_3:48705447-48705466 None:intergenic 35.0%
TCAGAACTTGAAGCAATGTT+CGG - chr7_3:48705511-48705530 None:intergenic 35.0%
CTCCATAAAAAGCTGAACTT+TGG + chr7_3:48705532-48705551 Msa1107220:intron 35.0%
! GTCCAAAGTTCAGCTTTTTA+TGG - chr7_3:48705537-48705556 None:intergenic 35.0%
AGGTGAGAAAAACACAAGAA+GGG - chr7_3:48705598-48705617 None:intergenic 35.0%
AAGGTGAGAAAAACACAAGA+AGG - chr7_3:48705599-48705618 None:intergenic 35.0%
GGTGAGAAAAACACAAGAAT+GGG - chr7_3:48705625-48705644 None:intergenic 35.0%
AGGTGAGAAAAACACAAGAA+TGG - chr7_3:48705598-48705617 None:intergenic 35.0%
GTTTGTTTACGAACAGAGTT+TGG + chr7_3:48705676-48705695 Msa1107220:intron 35.0%
CTTTGTTAGGTAAATGGTGA+TGG + chr7_3:48705737-48705756 Msa1107220:intron 35.0%
ATGGATGTTGTAAGTAGACA+AGG + chr7_3:48705756-48705775 Msa1107220:intron 35.0%
TGGATGTTGTAAGTAGACAA+GGG + chr7_3:48705757-48705776 Msa1107220:intron 35.0%
TATTCTCTGACAAGTCGAAT+AGG - chr7_3:48706026-48706045 None:intergenic 35.0%
!!! ATAGCGGATATGTGTGTTTT+AGG + chr7_3:48706057-48706076 Msa1107220:intron 35.0%
!! TAGCGGATATGTGTGTTTTA+GGG + chr7_3:48706058-48706077 Msa1107220:intron 35.0%
TAGCTATCTCAGATCTCATT+TGG + chr7_3:48706290-48706309 Msa1107220:intron 35.0%
!! TCCCCTGAATGTTTCTATTT+TGG + chr7_3:48706324-48706343 Msa1107220:intron 35.0%
GCCAAAATAGAAACATTCAG+GGG - chr7_3:48706328-48706347 None:intergenic 35.0%
!!! TTTTGGCTTGAAGACTTCTT+CGG + chr7_3:48706341-48706360 Msa1107220:intron 35.0%
! GCTACCGACTAAAGATAATT+TGG + chr7_3:48706369-48706388 Msa1107220:intron 35.0%
! TATCACACCTTGTGCTATTA+AGG + chr7_3:48706495-48706514 Msa1107220:intron 35.0%
TCATGGAAACCAAAAGCAAT+TGG - chr7_3:48706602-48706621 None:intergenic 35.0%
!!! TTGCTTTTGGTTTCCATGAT+TGG + chr7_3:48706603-48706622 Msa1107220:intron 35.0%
! ACTTTTAGCACATCTTGTGT+GGG + chr7_3:48706735-48706754 Msa1107220:intron 35.0%
TGTACACAAAGTGATGTAAG+GGG - chr7_3:48706960-48706979 None:intergenic 35.0%
! GCAAATGATCCAACGAATTT+TGG - chr7_3:48707163-48707182 None:intergenic 35.0%
! TGTATCTAAGACTGAACATC+TGG - chr7_3:48707223-48707242 None:intergenic 35.0%
ATGTTCAGTCTTAGATACAG+TGG + chr7_3:48707224-48707243 Msa1107220:intron 35.0%
ATTTGTGGCTCTTACCAATT+GGG - chr7_3:48707751-48707770 None:intergenic 35.0%
AATTTGTGGCTCTTACCAAT+TGG - chr7_3:48707752-48707771 None:intergenic 35.0%
TTAATCAACAAGCTCTACGA+TGG + chr7_3:48708008-48708027 Msa1107220:intron 35.0%
ATCAAATAAGGAAGAGGTGA+AGG + chr7_3:48708032-48708051 Msa1107220:intron 35.0%
!!! GTGAAGGTTTTTGGAATTGT+GGG + chr7_3:48708048-48708067 Msa1107220:CDS 35.0%
! GGAAATAGGTCTAAAGTTGA+AGG + chr7_3:48708092-48708111 Msa1107220:CDS 35.0%
TAAGGATCAGAAGGTAAGAT+AGG - chr7_3:48708282-48708301 None:intergenic 35.0%
GACCAATTTCATAGATGACA+AGG + chr7_3:48708326-48708345 Msa1107220:CDS 35.0%
CACACACAAAAATTGAAGAG+GGG - chr7_3:48708361-48708380 None:intergenic 35.0%
!! AAGAGCGTTTAGATGAGATT+AGG + chr7_3:48708523-48708542 Msa1107220:intron 35.0%
! AGAGCGTTTAGATGAGATTA+GGG + chr7_3:48708524-48708543 Msa1107220:intron 35.0%
TCCTATACGATTATGGTCTT+GGG - chr7_3:48708586-48708605 None:intergenic 35.0%
ATCCTATACGATTATGGTCT+TGG - chr7_3:48708587-48708606 None:intergenic 35.0%
CGTATAGGATATTGTGGTTT+CGG + chr7_3:48708597-48708616 Msa1107220:intron 35.0%
CTAGTCAATAGTATCACAGT+TGG - chr7_3:48708636-48708655 None:intergenic 35.0%
! AAACCCACTAATTTTCAGTC+TGG + chr7_3:48708662-48708681 Msa1107220:intron 35.0%
! AACCCACTAATTTTCAGTCT+GGG + chr7_3:48708663-48708682 Msa1107220:intron 35.0%
AACCCAGACTGAAAATTAGT+GGG - chr7_3:48708668-48708687 None:intergenic 35.0%
!! TCAAAAAAGTGGACTGAGTT+GGG - chr7_3:48709198-48709217 None:intergenic 35.0%
TATACTGGTCCCACAAATTA+AGG - chr7_3:48709621-48709640 None:intergenic 35.0%
TCCGTACATCATTCATATAC+TGG - chr7_3:48709636-48709655 None:intergenic 35.0%
!! GAGTATTGAGGAAACAAAAG+AGG + chr7_3:48709693-48709712 Msa1107220:CDS 35.0%
GAGCTCAAAGACAAATTCTT+TGG + chr7_3:48709736-48709755 Msa1107220:CDS 35.0%
CTCAAAGACAAATTCTTTGG+TGG + chr7_3:48709739-48709758 Msa1107220:CDS 35.0%
CAAAGACAAATTCTTTGGTG+GGG + chr7_3:48709741-48709760 Msa1107220:CDS 35.0%
GATCCAAAAAGATATGACCA+CGG - chr7_3:48709794-48709813 None:intergenic 35.0%
AGTTCAAATGCTTCTTGTAC+AGG - chr7_3:48709820-48709839 None:intergenic 35.0%
ACTGAAATTGTTCACTAGTG+AGG + chr7_3:48709837-48709856 Msa1107220:CDS 35.0%
TGGCTCCAATTATAAAGCTT+TGG - chr7_3:48709868-48709887 None:intergenic 35.0%
! AGCTTTGTAGAATGCCAAAA+GGG - chr7_3:48709941-48709960 None:intergenic 35.0%
AACACGATGCATAAAGTGAA+TGG + chr7_3:48710114-48710133 Msa1107220:three_prime_UTR 35.0%
TATCTCTATTGCTGCCCAAA+AGG + chr7_3:48704599-48704618 Msa1107220:CDS 40.0%
! CAGCTTATGAGCTTCCTTTT+GGG - chr7_3:48704616-48704635 None:intergenic 40.0%
CTCAGAAGTTGTCAAGAACA+TGG + chr7_3:48704639-48704658 Msa1107220:CDS 40.0%
AGTCCATACTTCAGTATCTC+AGG - chr7_3:48704742-48704761 None:intergenic 40.0%
TGTTGAAGGTAGTAGAGTAG+TGG - chr7_3:48704861-48704880 None:intergenic 40.0%
ATCTCTTGTAAGTGACAAGG+GGG + chr7_3:48705392-48705411 Msa1107220:intron 40.0%
GAGACACAAGCAATTTATCC+GGG - chr7_3:48705446-48705465 None:intergenic 40.0%
TGAGAAAAACACAAGAAGGG+GGG - chr7_3:48705595-48705614 None:intergenic 40.0%
GTGAGAAAAACACAAGAAGG+GGG - chr7_3:48705596-48705615 None:intergenic 40.0%
GGTGAGAAAAACACAAGAAG+GGG - chr7_3:48705597-48705616 None:intergenic 40.0%
!! AAAACACAAGAATGGGCTGA+AGG - chr7_3:48705618-48705637 None:intergenic 40.0%
TGTTTACGAACAGAGTTTGG+AGG + chr7_3:48705679-48705698 Msa1107220:intron 40.0%
GTTTACGAACAGAGTTTGGA+GGG + chr7_3:48705680-48705699 Msa1107220:intron 40.0%
ATGTTGTAAGTAGACAAGGG+AGG + chr7_3:48705760-48705779 Msa1107220:intron 40.0%
AGGTTTGTGGTATAGAGTGT+TGG + chr7_3:48705780-48705799 Msa1107220:intron 40.0%
!! TTGAGGAGAGTATTGTGAGA+AGG + chr7_3:48705923-48705942 Msa1107220:intron 40.0%
!! TGAGGAGAGTATTGTGAGAA+GGG + chr7_3:48705924-48705943 Msa1107220:intron 40.0%
!! ATTGTGAGAAGGGTTGGTAA+TGG + chr7_3:48705934-48705953 Msa1107220:intron 40.0%
AAAGGATCTGCTTCTAACCA+CGG - chr7_3:48705985-48706004 None:intergenic 40.0%
!!! GGATATGTGTGTTTTAGGGT+GGG + chr7_3:48706062-48706081 Msa1107220:intron 40.0%
!! TTACAGATTAGTGGTAGTGG+AGG + chr7_3:48706193-48706212 Msa1107220:intron 40.0%
! TAGTGGAGGTACAATCATTG+CGG + chr7_3:48706207-48706226 Msa1107220:intron 40.0%
AGATCTCATTTGGCACAAAC+AGG + chr7_3:48706300-48706319 Msa1107220:intron 40.0%
AGAGAGTCCTTAATAGCACA+AGG - chr7_3:48706505-48706524 None:intergenic 40.0%
!!! CTTTTGGTTTCCATGATTGG+TGG + chr7_3:48706606-48706625 Msa1107220:intron 40.0%
! CACTTTTAGCACATCTTGTG+TGG + chr7_3:48706734-48706753 Msa1107220:intron 40.0%
! CTTTTAGCACATCTTGTGTG+GGG + chr7_3:48706736-48706755 Msa1107220:intron 40.0%
GAAGCAGGAAAAAGATGTTC+GGG - chr7_3:48707657-48707676 None:intergenic 40.0%
CGAAGCAGGAAAAAGATGTT+CGG - chr7_3:48707658-48707677 None:intergenic 40.0%
GCTAAATTAGTCCACCCAAT+TGG + chr7_3:48707734-48707753 Msa1107220:intron 40.0%
!! CACTTCATAAACCGGTTTTG+TGG + chr7_3:48707817-48707836 Msa1107220:intron 40.0%
CTGTTTGAGTATTAGGAGCA+AGG - chr7_3:48707949-48707968 None:intergenic 40.0%
!! GAGCTTGTTGATTAACTCCT+AGG - chr7_3:48708003-48708022 None:intergenic 40.0%
CTCTACGATGGCATCAAATA+AGG + chr7_3:48708020-48708039 Msa1107220:intron 40.0%
GATGGCATCAAATAAGGAAG+AGG + chr7_3:48708026-48708045 Msa1107220:intron 40.0%
! AAGGAAGAGGTGAAGGTTTT+TGG + chr7_3:48708039-48708058 Msa1107220:intron 40.0%
!!! GGTGAAGGTTTTTGGAATTG+TGG + chr7_3:48708047-48708066 Msa1107220:CDS 40.0%
ATCACAAGTGACTCTGCTAT+AGG - chr7_3:48708225-48708244 None:intergenic 40.0%
! GCTCTTTTGTAAGGATCAGA+AGG - chr7_3:48708291-48708310 None:intergenic 40.0%
TGATCCTTACAAAAGAGCCT+TGG + chr7_3:48708293-48708312 Msa1107220:CDS 40.0%
ACTAAAGTTGGATGCGAACT+TGG - chr7_3:48708394-48708413 None:intergenic 40.0%
GAGCGTTTAGATGAGATTAG+GGG + chr7_3:48708525-48708544 Msa1107220:intron 40.0%
TGATCAAACCCAACCTAAAC+CGG - chr7_3:48708561-48708580 None:intergenic 40.0%
ACCCAAGACCATAATCGTAT+AGG + chr7_3:48708582-48708601 Msa1107220:intron 40.0%
CAACCCAGACTGAAAATTAG+TGG - chr7_3:48708669-48708688 None:intergenic 40.0%
GGAAAGAAGGAGAATACCAA+AGG - chr7_3:48709047-48709066 None:intergenic 40.0%
! TAGTGGGTAAGTGGGTTTAT+TGG + chr7_3:48709096-48709115 Msa1107220:intron 40.0%
! AGTGGGTAAGTGGGTTTATT+GGG + chr7_3:48709097-48709116 Msa1107220:intron 40.0%
GTTGGGTAATTGTGTGAGTA+TGG - chr7_3:48709181-48709200 None:intergenic 40.0%
!! CTCAAAAAAGTGGACTGAGT+TGG - chr7_3:48709199-48709218 None:intergenic 40.0%
TTGGGTCAACTTGAAAACCA+CGG - chr7_3:48709240-48709259 None:intergenic 40.0%
!! AGAACGTGAGAAGAGTATTG+AGG + chr7_3:48709681-48709700 Msa1107220:CDS 40.0%
! TTTTGTTGATATTGCTGCCG+TGG + chr7_3:48709774-48709793 Msa1107220:CDS 40.0%
TTGGGTGGTTGTTGAATTCT+TGG - chr7_3:48709888-48709907 None:intergenic 40.0%
CAACAACCACCCAATTGTTA+AGG + chr7_3:48709894-48709913 Msa1107220:CDS 40.0%
! GAGCTTTGTAGAATGCCAAA+AGG - chr7_3:48709942-48709961 None:intergenic 40.0%
! GCAGCTTATGAGCTTCCTTT+TGG - chr7_3:48704617-48704636 None:intergenic 45.0%
TTCAGTATCTCAGGCACTTC+TGG - chr7_3:48704733-48704752 None:intergenic 45.0%
GTGCCTGAGATACTGAAGTA+TGG + chr7_3:48704736-48704755 Msa1107220:CDS 45.0%
TTGCTTGTGTGCTTGAGCAT+AGG + chr7_3:48705314-48705333 Msa1107220:intron 45.0%
TTCGGATTGTGGAAAGAACC+CGG + chr7_3:48705425-48705444 Msa1107220:intron 45.0%
GAACAGAGTTTGGAGGGTTA+GGG + chr7_3:48705686-48705705 Msa1107220:intron 45.0%
AACAGAGTTTGGAGGGTTAG+GGG + chr7_3:48705687-48705706 Msa1107220:intron 45.0%
GTTAGGGGTTATGCAGATGA+GGG + chr7_3:48705702-48705721 Msa1107220:intron 45.0%
AAGTAGACAAGGGAGGTTTG+TGG + chr7_3:48705767-48705786 Msa1107220:intron 45.0%
!! AGAGTGTTGGTAGCTCGTTA+TGG + chr7_3:48705793-48705812 Msa1107220:intron 45.0%
GGGTCAGAGTAGTTCTTTGT+GGG + chr7_3:48705843-48705862 Msa1107220:intron 45.0%
GGTCAGAGTAGTTCTTTGTG+GGG + chr7_3:48705844-48705863 Msa1107220:intron 45.0%
GTCAGAGTAGTTCTTTGTGG+GGG + chr7_3:48705845-48705864 Msa1107220:intron 45.0%
GAGGTAGCGAAAATTCGTGA+TGG + chr7_3:48705871-48705890 Msa1107220:intron 45.0%
! GCGAAAATTCGTGATGGTGT+AGG + chr7_3:48705877-48705896 Msa1107220:intron 45.0%
!! GAGAGTATTGTGAGAAGGGT+TGG + chr7_3:48705928-48705947 Msa1107220:intron 45.0%
AAGGATCTGCTTCTAACCAC+GGG - chr7_3:48705984-48706003 None:intergenic 45.0%
CGGCTAAACTTCACACAGAA+AGG - chr7_3:48706003-48706022 None:intergenic 45.0%
TCTCTGACAAGTCGAATAGG+CGG - chr7_3:48706023-48706042 None:intergenic 45.0%
!!! CGGATATGTGTGTTTTAGGG+TGG + chr7_3:48706061-48706080 Msa1107220:intron 45.0%
!!! TATGTGTGTTTTAGGGTGGG+AGG + chr7_3:48706065-48706084 Msa1107220:intron 45.0%
!!! TTTTAGGGTGGGAGGAAAGA+GGG + chr7_3:48706073-48706092 Msa1107220:intron 45.0%
!! AAAGAGGGGCATCTTGACAA+TGG + chr7_3:48706088-48706107 Msa1107220:intron 45.0%
CAATCATTGCGGCTGTTACT+CGG + chr7_3:48706218-48706237 Msa1107220:intron 45.0%
CTTGAAGACTTCTTCGGAAC+AGG + chr7_3:48706347-48706366 Msa1107220:intron 45.0%
GTGGAGTCGCTTCTATGTAT+GGG + chr7_3:48706625-48706644 Msa1107220:intron 45.0%
!! TTTTTGGTGGAGGCAACCTT+TGG + chr7_3:48706671-48706690 Msa1107220:intron 45.0%
AGAACATGGCACCAAACCAA+AGG - chr7_3:48706690-48706709 None:intergenic 45.0%
CGATTTGAGTGATACGACAG+CGG - chr7_3:48707196-48707215 None:intergenic 45.0%
CAGGAAAAAGATGTTCGGGT+GGG - chr7_3:48707653-48707672 None:intergenic 45.0%
! ATCTTTTTCCTGCTTCGCCA+CGG + chr7_3:48707661-48707680 Msa1107220:intron 45.0%
TTGGAATTGTGGGAAGTCCA+TGG + chr7_3:48708058-48708077 Msa1107220:CDS 45.0%
CTTTAGACCTATTTCCACCC+TGG - chr7_3:48708088-48708107 None:intergenic 45.0%
! GATGAGATTAGGGGTGTATG+CGG + chr7_3:48708534-48708553 Msa1107220:intron 45.0%
AGGATATTGTGGTTTCGGTG+AGG + chr7_3:48708602-48708621 Msa1107220:intron 45.0%
! ATTTTCAGTCTGGGTTGCGT+TGG + chr7_3:48708672-48708691 Msa1107220:intron 45.0%
! TGTTGGCATTAGTGGGTAAG+TGG + chr7_3:48709087-48709106 Msa1107220:intron 45.0%
! GTTGGCATTAGTGGGTAAGT+GGG + chr7_3:48709088-48709107 Msa1107220:intron 45.0%
AGACAAATTCTTTGGTGGGG+AGG + chr7_3:48709744-48709763 Msa1107220:CDS 45.0%
! CTGCCGTGGTCATATCTTTT+TGG + chr7_3:48709788-48709807 Msa1107220:CDS 45.0%
AATGCCAAAAGGGTCTCTCT+TGG - chr7_3:48709931-48709950 None:intergenic 45.0%
!!! ATTTTTATTTTTATTTTCAT+AGG - chr7_3:48709068-48709087 None:intergenic 5.0%
AGTATCTCAGGCACTTCTGG+AGG - chr7_3:48704730-48704749 None:intergenic 50.0%
GCTGGACTACTTTCGGATTG+TGG + chr7_3:48705414-48705433 Msa1107220:intron 50.0%
CGAACAGAGTTTGGAGGGTT+AGG + chr7_3:48705685-48705704 Msa1107220:intron 50.0%
GGTTAGGGGTTATGCAGATG+AGG + chr7_3:48705701-48705720 Msa1107220:intron 50.0%
!! GTTGGTAGCTCGTTATGGTG+AGG + chr7_3:48705798-48705817 Msa1107220:intron 50.0%
GGGGTCAGAGTAGTTCTTTG+TGG + chr7_3:48705842-48705861 Msa1107220:intron 50.0%
! TCGTGATGGTGTAGGTGTTG+AGG + chr7_3:48705885-48705904 Msa1107220:intron 50.0%
!!! CTTTTTTCTGGACAGACCCG+TGG + chr7_3:48705965-48705984 Msa1107220:intron 50.0%
!!! GTTTTAGGGTGGGAGGAAAG+AGG + chr7_3:48706072-48706091 Msa1107220:intron 50.0%
! TTTAGGGTGGGAGGAAAGAG+GGG + chr7_3:48706074-48706093 Msa1107220:intron 50.0%
CATCAGAGGCGGAATTGCTA+GGG + chr7_3:48706127-48706146 Msa1107220:intron 50.0%
ATCAGAGGCGGAATTGCTAG+GGG + chr7_3:48706128-48706147 Msa1107220:intron 50.0%
TTGCGGCTGTTACTCGGTTA+AGG + chr7_3:48706224-48706243 Msa1107220:intron 50.0%
TGCGGCTGTTACTCGGTTAA+GGG + chr7_3:48706225-48706244 Msa1107220:intron 50.0%
AGAAGCGACTCCACCAATCA+TGG - chr7_3:48706619-48706638 None:intergenic 50.0%
GGTGGAGTCGCTTCTATGTA+TGG + chr7_3:48706624-48706643 Msa1107220:intron 50.0%
! ACAGTGGCAGAGCCACTTTA+CGG + chr7_3:48707240-48707259 Msa1107220:intron 50.0%
! ATTAATGGTGGGGTGGGTCA+TGG - chr7_3:48707276-48707295 None:intergenic 50.0%
GCAGGAAAAAGATGTTCGGG+TGG - chr7_3:48707654-48707673 None:intergenic 50.0%
TGTGGCTCTTACCAATTGGG+TGG - chr7_3:48707748-48707767 None:intergenic 50.0%
ATTTCCACCCTGGTTGACCA+TGG - chr7_3:48708078-48708097 None:intergenic 50.0%
TGGTCAACCAGGGTGGAAAT+AGG + chr7_3:48708078-48708097 Msa1107220:CDS 50.0%
! CGAGCCAAGGCTCTTTTGTA+AGG - chr7_3:48708300-48708319 None:intergenic 50.0%
! AAAGAGCCTTGGCTCGTTTC+TGG + chr7_3:48708304-48708323 Msa1107220:CDS 50.0%
ATTGGTCCAGAAACGAGCCA+AGG - chr7_3:48708313-48708332 None:intergenic 50.0%
! TATGCGGACCGGTTTAGGTT+GGG + chr7_3:48708550-48708569 Msa1107220:intron 50.0%
TTCTTTGGTGGGGAGGAGAT+TGG + chr7_3:48709751-48709770 Msa1107220:CDS 50.0%
CTTGTAAGTGACAAGGGGGC+TGG + chr7_3:48705396-48705415 Msa1107220:intron 55.0%
CAAGGGGGCTGGACTACTTT+CGG + chr7_3:48705407-48705426 Msa1107220:intron 55.0%
GGTAGCTCGTTATGGTGAGG+AGG + chr7_3:48705801-48705820 Msa1107220:intron 55.0%
CTCGTTATGGTGAGGAGGCA+GGG + chr7_3:48705806-48705825 Msa1107220:intron 55.0%
GAGTAGTTCTTTGTGGGGGC+AGG + chr7_3:48705849-48705868 Msa1107220:intron 55.0%
TAGTTCTTTGTGGGGGCAGG+AGG + chr7_3:48705852-48705871 Msa1107220:intron 55.0%
!! GATGGTGTAGGTGTTGAGGC+CGG + chr7_3:48705889-48705908 Msa1107220:intron 55.0%
!! ATGGTGTAGGTGTTGAGGCC+GGG + chr7_3:48705890-48705909 Msa1107220:intron 55.0%
CATCTTGACAATGGCGCGGT+CGG + chr7_3:48706097-48706116 Msa1107220:intron 55.0%
GCATCAGAGGCGGAATTGCT+AGG + chr7_3:48706126-48706145 Msa1107220:intron 55.0%
! CGGAATTGCTAGGGGAGTGT+AGG + chr7_3:48706136-48706155 Msa1107220:intron 55.0%
GGTGGAGGCAACCTTTGGTT+TGG + chr7_3:48706676-48706695 Msa1107220:intron 55.0%
! GCAGAGCCACTTTACGGCAT+GGG + chr7_3:48707246-48707265 Msa1107220:intron 55.0%
! AGCCACTTTACGGCATGGGT+GGG + chr7_3:48707250-48707269 Msa1107220:intron 55.0%
CATACTCTCACATCCAGCCG+TGG - chr7_3:48707681-48707700 None:intergenic 55.0%
TGGGAAGTCCATGGTCAACC+AGG + chr7_3:48708067-48708086 Msa1107220:CDS 55.0%
GGGAAGTCCATGGTCAACCA+GGG + chr7_3:48708068-48708087 Msa1107220:CDS 55.0%
AAGTCCATGGTCAACCAGGG+TGG + chr7_3:48708071-48708090 Msa1107220:CDS 55.0%
! GATTAGGGGTGTATGCGGAC+CGG + chr7_3:48708539-48708558 Msa1107220:intron 55.0%
! GTATGCGGACCGGTTTAGGT+TGG + chr7_3:48708549-48708568 Msa1107220:intron 55.0%
! GCCTCCAAGAGAGACCCTTT+TGG + chr7_3:48709924-48709943 Msa1107220:CDS 55.0%
GCCAAAAGGGTCTCTCTTGG+AGG - chr7_3:48709928-48709947 None:intergenic 55.0%
GCTCGTTATGGTGAGGAGGC+AGG + chr7_3:48705805-48705824 Msa1107220:intron 60.0%
GTTATGGTGAGGAGGCAGGG+AGG + chr7_3:48705809-48705828 Msa1107220:intron 60.0%
!! AGGCAGGGAGGTTGGTGGTT+GGG + chr7_3:48705821-48705840 Msa1107220:intron 60.0%
!! TGGTGTAGGTGTTGAGGCCG+GGG + chr7_3:48705891-48705910 Msa1107220:intron 60.0%
! GGGGCATCTTGACAATGGCG+CGG + chr7_3:48706093-48706112 Msa1107220:intron 60.0%
TCGGTTGCAGGCATCAGAGG+CGG + chr7_3:48706116-48706135 Msa1107220:intron 60.0%
! GGCAGAGCCACTTTACGGCA+TGG + chr7_3:48707245-48707264 Msa1107220:intron 60.0%
! GAGCCACTTTACGGCATGGG+TGG + chr7_3:48707249-48707268 Msa1107220:intron 60.0%
! TTTTCCTGCTTCGCCACGGC+TGG + chr7_3:48707665-48707684 Msa1107220:intron 60.0%
! GGGTGTATGCGGACCGGTTT+AGG + chr7_3:48708545-48708564 Msa1107220:intron 60.0%
TGGTGAGGAGGCAGGGAGGT+TGG + chr7_3:48705813-48705832 Msa1107220:intron 65.0%
TGAGGAGGCAGGGAGGTTGG+TGG + chr7_3:48705816-48705835 Msa1107220:intron 65.0%
!! GAGGCAGGGAGGTTGGTGGT+TGG + chr7_3:48705820-48705839 Msa1107220:intron 65.0%
!! GGCAGGGAGGTTGGTGGTTG+GGG + chr7_3:48705822-48705841 Msa1107220:intron 65.0%
!! GCAGGGAGGTTGGTGGTTGG+GGG + chr7_3:48705823-48705842 Msa1107220:intron 65.0%
!! GGTGTAGGTGTTGAGGCCGG+GGG + chr7_3:48705892-48705911 Msa1107220:intron 65.0%
!! TAGGTGTTGAGGCCGGGGGA+GGG + chr7_3:48705896-48705915 Msa1107220:intron 65.0%
CTCCTCAAACCACCCTCCCC+CGG - chr7_3:48705911-48705930 None:intergenic 65.0%
ACAATGGCGCGGTCGGTTGC+AGG + chr7_3:48706104-48706123 Msa1107220:intron 65.0%
CGGTCGGTTGCAGGCATCAG+AGG + chr7_3:48706113-48706132 Msa1107220:intron 65.0%
GGCCCACCCATGCCGTAAAG+TGG - chr7_3:48707255-48707274 None:intergenic 65.0%
ACATCCAGCCGTGGCGAAGC+AGG - chr7_3:48707672-48707691 None:intergenic 65.0%
!! GTAGGTGTTGAGGCCGGGGG+AGG + chr7_3:48705895-48705914 Msa1107220:intron 70.0%
GTGTTGAGGCCGGGGGAGGG+TGG + chr7_3:48705899-48705918 Msa1107220:intron 75.0%
GGCCGGGGGAGGGTGGTTTG+AGG + chr7_3:48705906-48705925 Msa1107220:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 48704586 48710148 48704586 ID=Msa1107220;Name=Msa1107220
chr7_3 mRNA 48704586 48710148 48704586 ID=Msa1107220-mRNA-1;Parent=Msa1107220;Name=Msa1107220-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.5|0.33|1|0.5|0.66|3|158|301
chr7_3 exon 48704586 48704831 48704586 ID=Msa1107220-mRNA-1:exon:9915;Parent=Msa1107220-mRNA-1
chr7_3 exon 48708042 48708347 48708042 ID=Msa1107220-mRNA-1:exon:9916;Parent=Msa1107220-mRNA-1
chr7_3 exon 48709637 48710148 48709637 ID=Msa1107220-mRNA-1:exon:9917;Parent=Msa1107220-mRNA-1
chr7_3 CDS 48704586 48704831 48704586 ID=Msa1107220-mRNA-1:cds;Parent=Msa1107220-mRNA-1
chr7_3 CDS 48708042 48708347 48708042 ID=Msa1107220-mRNA-1:cds;Parent=Msa1107220-mRNA-1
chr7_3 CDS 48709637 48709990 48709637 ID=Msa1107220-mRNA-1:cds;Parent=Msa1107220-mRNA-1
chr7_3 three_prime_UTR 48709991 48710148 48709991 ID=Msa1107220-mRNA-1:three_prime_utr;Parent=Msa1107220-mRNA-1
Gene Sequence

>Msa1107220

ATGATCTGCAAAATATCTCTATTGCTGCCCAAAAGGAAGCTCATAAGCTGCTTCTCAGAAGTTGTCAAGAACATGGAAGAAGTTAAGCTAAAGACTGATATCTCAAGACAACTTGTTGATTCCGAATTTGTTGATGCAACTCCTCCAGAAGTGCCTGAGATACTGAAGTATGGACTTCAAGGTTCTCAGCTCTCAAAATTTCTTGAGAAGATATCAGAAAGTCAATGGATGTCATTTTCAGTAAAGGAAGAGGTGAAGGTTTTTGGAATTGTGGGAAGTCCATGGTCAACCAGGGTGGAAATAGGTCTAAAGTTGAAGGGAGTTGAATACAAATATGAGAACGAAGAGTTTGGGAACTTGAGTGATGCACTCAAAGAATACAACCCTGTTTATAAGAAAGTTCCTGTTTTTGTTCATAATGGCAAGCCTATAGCAGAGTCACTTGTGATTCTTGAGTATATTGATGAGACTTGGAAACAAAATCCTATCTTACCTTCTGATCCTTACAAAAGAGCCTTGGCTCGTTTCTGGACCAATTTCATAGATGACAAGTATATGAATGATGTACGGAAAGCTTGTTTCACTTTTGATGAGAAAGAACGTGAGAAGAGTATTGAGGAAACAAAAGAGGCTCTTAAATTTCTTGAGAATGAGCTCAAAGACAAATTCTTTGGTGGGGAGGAGATTGGTTTTGTTGATATTGCTGCCGTGGTCATATCTTTTTGGATCTCTCCTGTACAAGAAGCATTTGAACTGAAATTGTTCACTAGTGAGGAATTTCCAAAGCTTTATAATTGGAGCCAAGAATTCAACAACCACCCAATTGTTAAGGAAAAATTGCCTCCAAGAGAGACCCTTTTGGCATTCTACAAAGCTCGTTATGAAGATCATTTGAGTTCAAAATAG

Protein sequence

>Msa1107220

MICKISLLLPKRKLISCFSEVVKNMEEVKLKTDISRQLVDSEFVDATPPEVPEILKYGLQGSQLSKFLEKISESQWMSFSVKEEVKVFGIVGSPWSTRVEIGLKLKGVEYKYENEEFGNLSDALKEYNPVYKKVPVFVHNGKPIAESLVILEYIDETWKQNPILPSDPYKRALARFWTNFIDDKYMNDVRKACFTFDEKEREKSIEETKEALKFLENELKDKFFGGEEIGFVDIAAVVISFWISPVQEAFELKLFTSEEFPKLYNWSQEFNNHPIVKEKLPPRETLLAFYKARYEDHLSSK*