AlfalfaGEDB | Msa0761250

M. sativa cultivar zhongmu-4 / Msa0761250

KEGG: K01610
GO: GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576
PFAM: PF01293.23

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0761250	XP_013453689.1	97.724	659	7	3	1	652	1	658	0.0	1335

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0761250	sp\|Q9T074\|PCKA1_ARATH	82.609	667	97	7	2	652	8	671	0.0	1132

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0761250	G7KF50	97.724	659	7	3	1	652	1	658	0.0	1335

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0059880	Msa0761250	0.808536	2.952144e-50	-8.615850e-47
Msa0150910	Msa0761250	0.811007	8.684020e-51	-8.615850e-47
Msa0378390	Msa0761250	0.832701	8.133372e-56	-8.615850e-47
Msa0427740	Msa0761250	0.833973	3.919280e-56	-8.615850e-47
Msa0427970	Msa0761250	0.840923	6.489653e-58	-8.615850e-47
Msa0518570	Msa0761250	0.833972	3.922126e-56	-8.615850e-47
Msa0720660	Msa0761250	0.929363	7.734518e-93	-8.615850e-47
Msa0761250	Msa0803560	0.878287	3.172044e-69	-8.615850e-47
Msa0761250	Msa0841800	0.892452	1.566328e-74	-8.615850e-47
Msa0761250	Msa0883610	0.805491	1.301303e-49	-8.615850e-47

Showing 1 to 10 of 13 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0761250	MtrunA17_Chr5g0411471	97.724	659	7	3	1	652	1	658	1335
Msa0761250	MtrunA17_Chr8g0366821	84.711	641	82	7	22	652	13	647	1090
Msa0761250	MtrunA17_Chr3g0141011	80.670	657	108	6	14	652	26	681	1083

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0761250	AT4G37870.1	82.609	667	97	7	2	652	8	671	1132
Msa0761250	AT5G65690.1	77.533	681	113	8	1	652	1	670	1083
Msa0761250	AT5G65690.4	77.533	681	113	8	1	652	1	670	1083
Msa0761250	AT5G65690.2	74.157	712	113	9	1	652	1	701	1068
Msa0761250	AT5G65690.3	77.778	576	89	7	1	547	1	566	926

Showing 1 to 5 of 5 entries

Previous1Next

Find 195 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGCATCAAACGGAAA+CGG	0.558552	5_2:-18342506	Msa0761250:CDS
AACTGCAACTTCAATCAATT+AGG	0.428100	5_2:-18342271	Msa0761250:intron
AAGACCTTTCTTCATTTCCC+CGG	0.500559	5_2:+18338249	None:intergenic
AAGAGAAAGTGGACCAAAGG+TGG	0.633631	5_2:-18340950	Msa0761250:CDS
AAGATTAAGATCAATGCTAG+TGG	0.617025	5_2:+18338309	None:intergenic
AAGCAATGTTGTGTTGTGTG+GGG	0.670355	5_2:-18336071	Msa0761250:three_prime_UTR
AAGGAGAGAATTTGACGCTT+AGG	0.500625	5_2:+18338202	None:intergenic
AAGTGAGTATAGTACCAGCT+GGG	0.575051	5_2:+18340803	None:intergenic
AAGTGGACCAAAGGTGGTGA+AGG	0.532921	5_2:-18340944	Msa0761250:CDS
AAGTGTTGCCATTGCTCCAT+TGG	0.439666	5_2:+18340315	None:intergenic

Showing 1 to 10 of 195 entries

Previous1 2 3 4 5…20Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CATCATTATTGCACTTCTTA+TGG	-	chr5_2:18335827-18335846	Msa0761250:three_prime_UTR	30.0%
AAAATAAACAGAACGAACCA+AGG	+	chr5_2:18335933-18335952	None:intergenic	30.0%
ATCCAGTGTGTTTGATATTA+CGG	-	chr5_2:18335993-18336012	Msa0761250:three_prime_UTR	30.0%
TTGTTCTGCAGAGAAAAAAA+TGG	-	chr5_2:18336360-18336379	Msa0761250:CDS	30.0%
GAGAAAAAAATGGCATCAAA+CGG	-	chr5_2:18336370-18336389	Msa0761250:CDS	30.0%
AACTGCAACTTCAATCAATT+AGG	-	chr5_2:18336611-18336630	Msa0761250:CDS	30.0%
ATTATGGTCATGTGAAAAAG+TGG	-	chr5_2:18336714-18336733	Msa0761250:CDS	30.0%
TTAAGTCAATTGAAGACTAG+CGG	-	chr5_2:18337424-18337443	Msa0761250:intron	30.0%
GTAAATTATGATCAACCTTC+TGG	+	chr5_2:18337980-18337999	None:intergenic	30.0%
AGGTTACTGAAAATGAACTT+TGG	-	chr5_2:18338642-18338661	Msa0761250:intron	30.0%

Showing 1 to 10 of 411 entries

Previous1 2 3 4 5…42Next

Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	18335802	18343102	18335802	ID=Msa0761250;Name=Msa0761250
chr5_2	mRNA	18335802	18343102	18335802	ID=Msa0761250-mRNA-1;Parent=Msa0761250;Name=Msa0761250-mRNA-1;_AED=0.10;_eAED=0.10;_QI=141\|0.91\|0.92\|1\|0.91\|0.84\|13\|296\|652
chr5_2	exon	18335802	18336244	18335802	ID=Msa0761250-mRNA-1:exon:7960;Parent=Msa0761250-mRNA-1
chr5_2	exon	18336348	18336516	18336348	ID=Msa0761250-mRNA-1:exon:7959;Parent=Msa0761250-mRNA-1
chr5_2	exon	18336610	18336779	18336610	ID=Msa0761250-mRNA-1:exon:7958;Parent=Msa0761250-mRNA-1
chr5_2	exon	18336864	18337027	18336864	ID=Msa0761250-mRNA-1:exon:7957;Parent=Msa0761250-mRNA-1
chr5_2	exon	18337608	18337673	18337608	ID=Msa0761250-mRNA-1:exon:7956;Parent=Msa0761250-mRNA-1
chr5_2	exon	18337796	18337969	18337796	ID=Msa0761250-mRNA-1:exon:7955;Parent=Msa0761250-mRNA-1
chr5_2	exon	18338143	18338441	18338143	ID=Msa0761250-mRNA-1:exon:7954;Parent=Msa0761250-mRNA-1
chr5_2	exon	18338682	18338782	18338682	ID=Msa0761250-mRNA-1:exon:7953;Parent=Msa0761250-mRNA-1
chr5_2	exon	18339875	18339959	18339875	ID=Msa0761250-mRNA-1:exon:7952;Parent=Msa0761250-mRNA-1
chr5_2	exon	18340232	18340385	18340232	ID=Msa0761250-mRNA-1:exon:7951;Parent=Msa0761250-mRNA-1
chr5_2	exon	18340818	18340993	18340818	ID=Msa0761250-mRNA-1:exon:7950;Parent=Msa0761250-mRNA-1
chr5_2	exon	18342272	18342533	18342272	ID=Msa0761250-mRNA-1:exon:7949;Parent=Msa0761250-mRNA-1
chr5_2	exon	18342970	18343102	18342970	ID=Msa0761250-mRNA-1:exon:7948;Parent=Msa0761250-mRNA-1
chr5_2	five_prime_UTR	18342970	18343102	18342970	ID=Msa0761250-mRNA-1:five_prime_utr;Parent=Msa0761250-mRNA-1
chr5_2	five_prime_UTR	18342526	18342533	18342526	ID=Msa0761250-mRNA-1:five_prime_utr;Parent=Msa0761250-mRNA-1
chr5_2	CDS	18342272	18342525	18342272	ID=Msa0761250-mRNA-1:cds;Parent=Msa0761250-mRNA-1
chr5_2	CDS	18340818	18340993	18340818	ID=Msa0761250-mRNA-1:cds;Parent=Msa0761250-mRNA-1
chr5_2	CDS	18340232	18340385	18340232	ID=Msa0761250-mRNA-1:cds;Parent=Msa0761250-mRNA-1
chr5_2	CDS	18339875	18339959	18339875	ID=Msa0761250-mRNA-1:cds;Parent=Msa0761250-mRNA-1
chr5_2	CDS	18338682	18338782	18338682	ID=Msa0761250-mRNA-1:cds;Parent=Msa0761250-mRNA-1
chr5_2	CDS	18338143	18338441	18338143	ID=Msa0761250-mRNA-1:cds;Parent=Msa0761250-mRNA-1
chr5_2	CDS	18337796	18337969	18337796	ID=Msa0761250-mRNA-1:cds;Parent=Msa0761250-mRNA-1
chr5_2	CDS	18337608	18337673	18337608	ID=Msa0761250-mRNA-1:cds;Parent=Msa0761250-mRNA-1
chr5_2	CDS	18336864	18337027	18336864	ID=Msa0761250-mRNA-1:cds;Parent=Msa0761250-mRNA-1
chr5_2	CDS	18336610	18336779	18336610	ID=Msa0761250-mRNA-1:cds;Parent=Msa0761250-mRNA-1
chr5_2	CDS	18336348	18336516	18336348	ID=Msa0761250-mRNA-1:cds;Parent=Msa0761250-mRNA-1
chr5_2	CDS	18336098	18336244	18336098	ID=Msa0761250-mRNA-1:cds;Parent=Msa0761250-mRNA-1
chr5_2	three_prime_UTR	18335802	18336097	18335802	ID=Msa0761250-mRNA-1:three_prime_utr;Parent=Msa0761250-mRNA-1

Gene Sequence

>Msa0761250

ATGGCATCAAACGGAAACGGAAGTGTTGCAACAGAGAACGGGAGCAACGGGCTTCCAAAAATCACGACACAGAAAAGTGTGAATGGGATTTGTCACGATGATAGTGGTCCCACTGTAAATGCAAAAACAATTGATGAACTTCATTCACTGCAGAAGAAGAAATCAGCACCTTCTACACCTAATACAGGAACTTCAACTCCATTTGCTACTCTCTCTGATCAAGAACGCCAGAAACTGCAACTTCAATCAATTAGTGCATCACTTGCATCATTGACAAGAGAAAGTGGACCAAAGGTGGTGAAGGGAGATCCAGCCAAGAGCCAGAAGGTTGATCATAATTTACACCACCATCATGTTCCTACTCCAACCATTGCTGTTAGTGACAGTGCTTTGAAATTTACACATGTTCTCTACAATCTCTCCCCAGCTGAACTATATGAGCAGGCGATAAAGTATGAGAAAGGATCATTCATCACTTCCAATGGAGCAATGGCAACACTTTCTGGTGCCAAGACAGGTCGTTCTCCTAGAGACAAGCGTGTGGTTAAGGATAAGGTTACTGAAAATGAACTTTGGTGGGGAAAGGGTTCTCCTAACATTGAGATGGATGAGGAGACTTTCATGGTGAATAGAGAAAGGGCAGTTGATTACTTGAATTCTTTGGACAAGGTGTTTGTGAACGACCAATTCTTGAATTGGGATCCAGAGAACAGAATCAAAGTCAGAATTGTATCAGCCAGAGCATACCATTCATTGTTCATGCACAACATGTGTATCCGACCCAGTCCTGAAGAGCTGGAGAATTTTGGTACTCCGGACTTCACTATATACAATGCCGGAAAGTTTCCATGTAACCGTTTCACTCACTACATGACATCTTCCACTAGCATTGATCTTAATCTTGCTAGAAGGGAAATGGTTATCCTCGGCACACAGTACGCCGGGGAAATGAAGAAAGGTCTTTTCAGTGTCATGCATTATCTCATGCCTAAGCGTCAAATTCTCTCCTTACACTCTGGTTCCAATATGGGCAAAGGTGGCGATGTTGCTCTCTTCTTTGGACTCTCAGGTACTGGAAAGACCACTCTTTCTACTGATCATAATAGATATTTGATTGGAGATGATGAACATTGTTGGAGTGAGAATGGTGTCTCCAACATTGAAGGTGGTTGTTATGCTAAATGCATCGATCTCTCCCGGGAGAAAGAGCCTGATATCTGGAATGCAATTAGGTTTGGTACAGTGTTGGAAAACGTGGTGTTTGATGAGCATACTAGAGAAGTTGATTATTCTGATAAATCAGTTACAGCCTATCCGATAGAGTACATACCAAATGCAAAGTTACCATGTGTTGGACCTCATCCAAAGAATGTTATTCTTTTGGCATGTGATGCATTTGGTGTGCTACCACCTGTGAGTAAGCTAACCCTGGCGCAGACCATGTACCATTTCATCAGTGGATATACTGCTCTGGTGGCTGGTACTGAGGATGGTATAAAGGAGCCACAAGCAACATTTTCAGCTTGTTTCGGTGCAGCATTCATAATGTTACACCCTACAAAGTATGCTGCAATGCTTGCTGAAAAGATGGAGAGCCATGGTGCAACAGGATGGCTTGTTAACACTGGTTGGTCCGGTGGCAGCTATGGTACCGGGAATCGCATCAAACTAAGTTATACTAGAAAAATTATTGATGCTATTCACAATGGAAGCCTCCTGGGGGCAGAATACAAGAAGAGTGAGATTTTTGGCCTTCAGACCCCAACTGAAGTAGAGGGTGTCCCTTCAGAAATTCTTGATCCTATCAATGCGTGGTCAGACAAAAACGCTTACAATGCGACATTGTTGAAGCTGGGTGGATTGTTCAAGAAGAATTTTGAAACCTTCACCAACTACAAAATTGGAAAGGGTGATGACAACCTCACAGAAGAGATTCTTGCAGCTGGTCCAATCTTTTGA

Protein sequence

>Msa0761250

MASNGNGSVATENGSNGLPKITTQKSVNGICHDDSGPTVNAKTIDELHSLQKKKSAPSTPNTGTSTPFATLSDQERQKLQLQSISASLASLTRESGPKVVKGDPAKSQKVDHNLHHHHVPTPTIAVSDSALKFTHVLYNLSPAELYEQAIKYEKGSFITSNGAMATLSGAKTGRSPRDKRVVKDKVTENELWWGKGSPNIEMDEETFMVNRERAVDYLNSLDKVFVNDQFLNWDPENRIKVRIVSARAYHSLFMHNMCIRPSPEELENFGTPDFTIYNAGKFPCNRFTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGSNMGKGGDVALFFGLSGTGKTTLSTDHNRYLIGDDEHCWSENGVSNIEGGCYAKCIDLSREKEPDIWNAIRFGTVLENVVFDEHTREVDYSDKSVTAYPIEYIPNAKLPCVGPHPKNVILLACDAFGVLPPVSKLTLAQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMLHPTKYAAMLAEKMESHGATGWLVNTGWSGGSYGTGNRIKLSYTRKIIDAIHNGSLLGAEYKKSEIFGLQTPTEVEGVPSEILDPINAWSDKNAYNATLLKLGGLFKKNFETFTNYKIGKGDDNLTEEILAAGPIF*