AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0427970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427970 MtrunA17_Chr8g0384661 68.736 451 141 0 31 481 43 493 0.0 667
Msa0427970 MtrunA17_Chr3g0130651 70.130 462 136 1 19 480 7 466 0.0 658
Msa0427970 MtrunA17_Chr3g0130641 66.180 479 157 2 1 479 1 474 0.0 658
Msa0427970 MtrunA17_Chr3g0125091 61.284 483 177 5 1 479 1 477 0.0 612
Msa0427970 MtrunA17_Chr3g0125081 60.707 481 180 4 1 478 1 475 0.0 611
Msa0427970 MtrunA17_Chr4g0037201 61.339 463 170 2 28 481 49 511 0.0 606
Msa0427970 MtrunA17_Chr3g0125101 59.627 483 185 5 1 479 1 477 0.0 593
Msa0427970 MtrunA17_Chr1g0159761 63.516 455 162 2 28 478 17 471 0.0 592
Msa0427970 MtrunA17_Chr3g0140761 54.430 474 210 4 11 478 5 478 0.0 521
Msa0427970 MtrunA17_Chr1g0146491 53.829 457 206 3 27 478 12 468 0.0 514
Msa0427970 MtrunA17_Chr3g0130671 96.761 247 7 1 1 246 1 247 7.68e-175 492
Msa0427970 MtrunA17_Chr1g0206871 51.868 455 205 4 37 478 14 467 3.19e-167 480
Msa0427970 MtrunA17_Chr3g0103231 51.020 441 211 2 31 468 16 454 7.91e-165 473
Msa0427970 MtrunA17_Chr3g0103211 50.113 441 215 2 31 468 16 454 1.04e-158 458
Msa0427970 MtrunA17_Chr3g0103221 51.030 437 209 3 35 468 27 461 3.65e-158 457
Msa0427970 MtrunA17_Chr5g0447221 50.229 436 210 4 37 468 28 460 7.58e-157 453
Msa0427970 MtrunA17_Chr3g0103271 49.115 452 220 4 20 467 9 454 1.34e-150 437
Msa0427970 MtrunA17_Chr3g0140531 47.046 457 237 3 26 478 12 467 2.09e-149 434
Msa0427970 MtrunA17_Chr1g0146411 46.930 456 232 4 26 478 21 469 1.47e-148 432
Msa0427970 MtrunA17_Chr1g0146331 46.137 453 236 5 32 479 14 463 6.42e-147 428
Msa0427970 MtrunA17_Chr1g0146391 46.018 452 237 4 32 479 6 454 6.00e-146 425
Msa0427970 MtrunA17_Chr2g0293331 46.358 453 236 4 31 479 5 454 4.20e-145 423
Msa0427970 MtrunA17_Chr3g0140541 47.323 467 240 4 15 478 3 466 1.97e-142 417
Msa0427970 MtrunA17_Chr5g0447231 43.349 436 241 3 37 468 24 457 7.45e-134 394
Msa0427970 MtrunA17_Chr3g0130661 99.448 181 1 0 302 482 1 181 1.64e-127 368
Msa0427970 MtrunA17_Chr1g0206851 48.361 366 178 4 119 479 19 378 1.05e-125 371
Msa0427970 MtrunA17_Chr5g0402151 60.000 295 85 3 41 335 3 264 9.48e-114 336
Msa0427970 MtrunA17_Chr1g0206831 50.298 336 156 4 143 473 6 335 7.35e-113 337
Msa0427970 MtrunA17_Chr3g0103251 48.424 349 146 3 152 468 21 367 9.80e-113 337
Msa0427970 MtrunA17_Chr1g0206821 53.785 251 113 3 20 268 5 254 9.54e-83 265
Msa0427970 MtrunA17_Chr1g0206821 52.232 224 104 1 261 481 307 530 2.32e-78 254
Msa0427970 MtrunA17_Chr6g0458931 28.889 450 276 11 38 479 42 455 1.14e-43 160
Msa0427970 MtrunA17_Chr2g0331721 30.120 415 243 12 39 443 48 425 8.16e-43 157
Msa0427970 MtrunA17_Chr8g0376991 27.902 448 281 12 39 479 24 436 3.09e-42 155
Msa0427970 MtrunA17_Chr4g0057851 28.989 445 274 10 39 476 11 420 1.13e-40 151
Msa0427970 MtrunA17_Chr5g0422741 30.679 427 250 13 27 445 17 405 4.72e-39 147
Msa0427970 MtrunA17_Chr1g0184721 26.872 454 293 12 32 478 16 437 1.44e-38 145
Msa0427970 MtrunA17_Chr6g0458921 29.821 446 276 10 39 479 15 428 4.85e-35 135
Msa0427970 MtrunA17_Chr6g0459031 29.821 446 276 10 39 479 15 428 5.04e-35 135
Msa0427970 MtrunA17_Chr3g0103261 49.587 121 61 0 31 151 16 136 6.24e-35 128
Msa0427970 MtrunA17_Chr1g0206861 50.781 128 61 2 17 143 1 127 3.94e-34 125
Msa0427970 MtrunA17_Chr1g0206841 63.830 94 34 0 27 120 10 103 8.95e-34 123
Msa0427970 MtrunA17_Chr2g0328081 29.372 446 280 8 38 479 14 428 1.10e-33 132
Msa0427970 MtrunA17_Chr6g0459021 28.571 469 291 12 20 479 14 447 2.62e-33 131
Msa0427970 MtrunA17_Chr6g0459011 29.621 422 261 9 54 471 1 390 3.12e-33 130
Msa0427970 MtrunA17_Chr7g0230011 28.194 454 272 11 39 479 31 443 3.56e-33 130
Msa0427970 MtrunA17_Chr3g0077651 28.381 451 279 12 39 479 53 469 5.40e-33 130
Msa0427970 MtrunA17_Chr1g0198081 26.608 451 285 17 44 481 64 481 5.63e-32 127
Msa0427970 MtrunA17_Chr1g0198531 28.571 427 261 13 27 445 13 403 7.27e-32 127
Msa0427970 MtrunA17_Chr4g0027241 26.941 438 270 16 20 440 17 421 1.57e-31 126
Msa0427970 MtrunA17_Chr6g0459001 28.184 479 283 13 38 479 22 476 1.18e-30 124
Msa0427970 MtrunA17_Chr3g0122921 25.887 479 288 13 17 479 1 428 1.98e-30 122
Msa0427970 MtrunA17_Chr1g0198541 27.111 450 284 11 34 475 20 433 2.81e-30 122
Msa0427970 MtrunA17_Chr1g0146351 58.586 99 40 1 48 146 13 110 3.37e-29 110
Msa0427970 MtrunA17_Chr8g0387941 23.899 477 312 16 20 479 6 448 3.91e-26 110
Msa0427970 MtrunA17_Chr4g0038711 24.729 461 295 14 39 477 71 501 3.36e-22 99.4
Msa0427970 MtrunA17_Chr5g0436281 26.128 421 258 16 69 479 4 381 1.33e-19 90.5
Msa0427970 MtrunA17_Chr3g0143701 22.560 461 309 13 26 468 68 498 1.44e-19 91.7
Msa0427970 MtrunA17_Chr5g0406351 23.570 437 286 12 39 459 108 512 8.40e-17 83.2
Msa0427970 MtrunA17_Chr3g0112971 25.061 407 250 15 84 479 72 434 5.44e-15 77.0
Msa0427970 MtrunA17_Chr5g0406331 23.488 430 280 12 39 452 87 483 2.17e-14 75.5
Msa0427970 MtrunA17_Chr1g0159751 39.024 82 43 1 281 362 1 75 5.41e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427970 AT5G09220.1 65.639 454 152 2 29 478 36 489 0.0 644
Msa0427970 AT5G63850.1 63.676 457 162 2 29 481 9 465 0.0 628
Msa0427970 AT1G77380.1 65.419 454 154 1 28 478 19 472 0.0 618
Msa0427970 AT1G44100.1 61.638 464 167 4 26 479 15 477 0.0 611
Msa0427970 AT1G10010.1 52.863 454 210 2 29 478 18 471 0.0 516
Msa0427970 AT1G10010.2 52.863 454 210 2 29 478 19 472 0.0 516
Msa0427970 AT1G58360.1 53.027 479 214 4 4 478 9 480 4.64e-180 513
Msa0427970 AT5G49630.1 54.585 458 202 4 28 479 22 479 2.00e-177 506
Msa0427970 AT5G23810.1 46.753 462 236 5 15 468 2 461 4.23e-136 401
Msa0427970 AT5G23810.2 47.493 339 173 3 15 350 2 338 5.10e-100 305
Msa0427970 AT5G23810.4 44.747 257 137 3 15 268 2 256 2.39e-67 217
Msa0427970 AT5G23810.5 43.541 209 115 2 15 220 2 210 7.90e-51 173
Msa0427970 AT5G23810.3 43.541 209 115 2 15 220 2 210 7.90e-51 173
Msa0427970 AT5G40780.1 28.378 444 284 9 39 479 34 446 3.27e-43 159
Msa0427970 AT1G48640.1 28.788 462 291 10 24 479 24 453 2.15e-42 156
Msa0427970 AT5G40780.3 28.205 429 274 9 54 479 1 398 1.50e-39 147
Msa0427970 AT5G40780.2 28.205 429 274 9 54 479 1 398 1.50e-39 147
Msa0427970 AT1G24400.1 29.139 453 269 12 39 479 29 441 4.99e-39 147
Msa0427970 AT1G67640.1 29.464 448 274 10 39 479 29 441 1.40e-37 143
Msa0427970 AT3G01760.1 26.724 464 303 11 19 474 8 442 1.99e-36 140
Msa0427970 AT1G71680.1 29.130 460 289 10 26 479 20 448 7.53e-35 135
Msa0427970 AT1G61270.1 28.670 436 267 11 39 465 34 434 8.86e-35 135
Msa0427970 AT1G71680.2 31.672 341 210 9 26 360 20 343 3.81e-32 126
Msa0427970 AT1G25530.1 28.054 442 269 13 38 467 27 431 2.71e-30 122
Msa0427970 AT1G08230.2 25.885 452 298 12 37 479 26 449 2.73e-27 114
Msa0427970 AT5G41800.1 24.672 458 295 16 37 479 25 447 2.49e-23 102
Msa0427970 AT3G55740.1 25.167 449 279 18 44 479 33 437 6.52e-21 95.5
Msa0427970 AT3G55740.2 25.416 421 261 16 69 479 4 381 7.20e-21 94.7
Msa0427970 AT3G55740.3 25.416 421 261 16 69 479 4 381 7.20e-21 94.7
Msa0427970 AT1G08230.4 28.526 312 199 7 174 479 37 330 2.13e-20 92.4
Msa0427970 AT1G08230.6 28.526 312 199 7 174 479 37 330 2.13e-20 92.4
Msa0427970 AT1G08230.5 28.526 312 199 7 174 479 37 330 2.13e-20 92.4
Msa0427970 AT1G08230.3 28.846 312 198 8 174 479 56 349 3.00e-20 92.4
Msa0427970 AT2G36590.1 25.126 398 245 16 44 430 30 385 3.50e-19 90.1
Msa0427970 AT2G39890.2 23.142 471 313 17 17 479 11 440 4.32e-19 90.1
Msa0427970 AT2G39890.1 23.142 471 313 17 17 479 11 440 4.32e-19 90.1
Msa0427970 AT2G39890.3 23.501 417 274 14 69 479 4 381 6.33e-18 85.9
Msa0427970 AT4G35180.1 23.077 442 293 10 21 444 30 442 7.57e-12 67.8

Find 157 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAATTCTCTGTCAATTT+TGG 0.067119 3_2:-78708867 None:intergenic
TGATTGGGGCATTGGGATTT+TGG 0.112131 3_2:+78709014 Msa0427970:CDS
ATCCACTTCCTACTCCATTT+TGG 0.128680 3_2:-78709088 None:intergenic
CGTTGTGGTGACACCGAATT+TGG 0.176572 3_2:+78706086 Msa0427970:CDS
GTACTTCTGCAGGAAATATT+TGG 0.182217 3_2:+78709581 Msa0427970:three_prime_UTR
ATCTTCGTGGTCTATCTTAA+TGG 0.227125 3_2:+78709510 Msa0427970:three_prime_UTR
GCCATCATCGTCATAGTATT+TGG 0.231930 3_2:-78705794 None:intergenic
TTCATTTACAGACGCCTAAT+TGG 0.231959 3_2:+78703762 Msa0427970:five_prime_UTR
TTGCATTCAAGAAGAATAAT+TGG 0.259206 3_2:+78709343 Msa0427970:three_prime_UTR
CTTTCTCGACGAAGGCAAAT+AGG 0.260797 3_2:-78708826 None:intergenic
TCTTCGTGGTCTATCTTAAT+GGG 0.270464 3_2:+78709511 Msa0427970:three_prime_UTR
AAGATACAACACAAATAAAA+TGG 0.292708 3_2:-78709492 None:intergenic
GCTCAGATGGGTTGGATTGC+TGG 0.293758 3_2:+78705996 Msa0427970:CDS
ACAGGAAAGTAAACAGTTAA+AGG 0.298387 3_2:-78709037 None:intergenic
AAAACATATTTACGTTAGTT+TGG 0.301907 3_2:+78708921 Msa0427970:CDS
GGGAACCTGCTCGCCGGATT+TGG 0.301956 3_2:+78708716 Msa0427970:CDS
TAAAATCTATTGCCTCCTTC+TGG 0.312586 3_2:+78709237 Msa0427970:three_prime_UTR
TGCATGGGATATGCTGCTTT+TGG 0.316047 3_2:+78708680 Msa0427970:CDS
GTATCTATTGTGGCTGGTCT+TGG 0.319531 3_2:+78709145 Msa0427970:CDS
TGGTGTCTCAAAAGCATATT+GGG 0.324806 3_2:+78708736 Msa0427970:CDS
CTTGGAATTTCCAAAGTTGC+AGG 0.329872 3_2:+78707590 Msa0427970:CDS
GATGGTTGTAACGGTCTTCT+TGG 0.329872 3_2:+78709285 Msa0427970:three_prime_UTR
GGAAATATTTGGAGCCTTGA+TGG 0.330090 3_2:+78709592 Msa0427970:three_prime_UTR
AATAGAAAACGGTACTGTTA+TGG 0.340529 3_2:+78707885 Msa0427970:intron
GAGTAGGAAGTGGATTATTC+TGG 0.341119 3_2:+78709096 Msa0427970:CDS
TTTCTCGACGAAGGCAAATA+GGG 0.341560 3_2:-78708825 None:intergenic
ATAGTTTCTCTTTCCAAATT+CGG 0.343023 3_2:-78706099 None:intergenic
TTCTTCTTGAATGCAACTTC+GGG 0.345008 3_2:-78709336 None:intergenic
TTTGGGAGTGATTGGGGCAT+TGG 0.355425 3_2:+78709006 Msa0427970:CDS
AACCCATACATGATAGCTTT+TGG 0.357510 3_2:+78707461 Msa0427970:CDS
GATGCAGTTAGTAACATTCT+TGG 0.359420 3_2:+78706131 Msa0427970:CDS
ACGATGATGGCCGTGTTAAA+CGG 0.361196 3_2:+78705806 Msa0427970:CDS
AAAGAGAAACTATACTTTCA+TGG 0.361574 3_2:+78706109 Msa0427970:CDS
TGTGGCTGGTCTTGGCTCAT+TGG 0.362801 3_2:+78709153 Msa0427970:CDS
TCCACAATTGCTCTTGCTCT+TGG 0.363333 3_2:+78707572 Msa0427970:CDS
TACAAATGAAGATCCCAAAA+TGG 0.364992 3_2:+78709074 Msa0427970:CDS
TTGGCTCATTGGTCGGTGTC+TGG 0.365007 3_2:+78709164 Msa0427970:CDS
ACACTTGGTATGCTCCAAAA+AGG 0.366510 3_2:-78708793 None:intergenic
TTGGGAGTGATTGGGGCATT+GGG 0.373067 3_2:+78709007 Msa0427970:CDS
TGCAGCAATTAGGTAGGAAT+TGG 0.373886 3_2:-78704164 None:intergenic
ATTTCAGAATCTCTCACTCT+TGG 0.374704 3_2:+78704104 Msa0427970:intron
AAAGACGCATGTCATATTTC+AGG 0.375996 3_2:+78707437 Msa0427970:CDS
ATAACAGCTGTGATAGGATC+TGG 0.377729 3_2:+78705948 Msa0427970:CDS
TGATTTAGTACCAATGGTAT+TGG 0.380556 3_2:-78709415 None:intergenic
CACCACATGTTATGAAAATC+TGG 0.392967 3_2:-78707512 None:intergenic
AGGTATATAACCTGCAACTT+TGG 0.398196 3_2:-78707600 None:intergenic
ACGCCAAAAGCTATCATGTA+TGG 0.400343 3_2:-78707464 None:intergenic
TTGGTGTCTCAAAAGCATAT+TGG 0.403668 3_2:+78708735 Msa0427970:CDS
TTATTTGTGTTGTATCTTCG+TGG 0.405006 3_2:+78709497 Msa0427970:three_prime_UTR
ATAGAAAACGGTACTGTTAT+GGG 0.405404 3_2:+78707886 Msa0427970:intron
GTGGAGTCGGCGGTCCAATT+AGG 0.406438 3_2:-78703776 None:intergenic
AACGAAAATGTGCAGCAATT+AGG 0.415145 3_2:-78704174 None:intergenic
TCAAACTTTATAGAGAGATC+AGG 0.419783 3_2:+78704129 Msa0427970:five_prime_UTR
AAAGGTGTACCTGAATTTCC+AGG 0.430716 3_2:-78708017 None:intergenic
ATGGGTTGGATTGCTGGTCC+TGG 0.431751 3_2:+78706002 Msa0427970:CDS
ATGGTTGTAACGGTCTTCTT+GGG 0.433582 3_2:+78709286 Msa0427970:three_prime_UTR
ATTCTTCTTGAATGCAACTT+CGG 0.436362 3_2:-78709337 None:intergenic
TTGGGATCTTATTTCATAAG+TGG 0.437854 3_2:+78709304 Msa0427970:three_prime_UTR
GTTATAATTGATGCTGTGAT+AGG 0.438753 3_2:+78709446 Msa0427970:three_prime_UTR
GGTCTATAGCTCAGATGGGT+TGG 0.444852 3_2:+78705988 Msa0427970:CDS
CTGGGGTGCTCTCCTTAGCC+TGG 0.452285 3_2:+78705967 Msa0427970:CDS
GGGCCCAGTGTTAAGATTTG+TGG 0.452949 3_2:+78706392 Msa0427970:CDS
GAAAATCTGGAATTTGAGAA+AGG 0.460822 3_2:-78707499 None:intergenic
ACCACTAGGCAGCCGCCTTG+TGG 0.468871 3_2:-78703795 None:intergenic
AGCCTGGTCTATAGCTCAGA+TGG 0.469391 3_2:+78705983 Msa0427970:CDS
CTGCCTCATTGTATCTATTG+TGG 0.469595 3_2:+78709135 Msa0427970:CDS
CTCATTGTATCTATTGTGGC+TGG 0.472707 3_2:+78709139 Msa0427970:CDS
TTATCTGCTCTGTGGCTGCA+TGG 0.476635 3_2:+78708664 Msa0427970:CDS
GAATTCAAAGTTAAAATCCC+TGG 0.478084 3_2:+78708881 Msa0427970:CDS
TTATGTGTCCATACCTCTGA+TGG 0.478499 3_2:+78707413 Msa0427970:CDS
ACTGTTATGGGTAGCCTCAC+AGG 0.482753 3_2:+78707898 Msa0427970:CDS
GACGAAGGCAAATAGGGGTT+GGG 0.484362 3_2:-78708819 None:intergenic
AAGATGGTAGAACACTCTTC+CGG 0.487867 3_2:+78705709 Msa0427970:exon
CACATTATAACAGCTGTGAT+AGG 0.489553 3_2:+78705942 Msa0427970:CDS
TTAATTTGTACCAATACCAT+TGG 0.490079 3_2:+78709405 Msa0427970:three_prime_UTR
GGCCCAGTGTTAAGATTTGT+GGG 0.490344 3_2:+78706393 Msa0427970:CDS
TCCAAGAGCAAGAGCAATTG+TGG 0.490585 3_2:-78707573 None:intergenic
GTTTAATTCGATAAGCTGAA+TGG 0.491434 3_2:-78709208 None:intergenic
ATTTGCCTTCGTCGAGAAAG+AGG 0.492276 3_2:+78708829 Msa0427970:CDS
AATCCGGCGAGCAGGTTCCC+TGG 0.492450 3_2:-78708713 None:intergenic
TGAATGGTTTGTATTTCTGC+AGG 0.492604 3_2:-78709192 None:intergenic
ACATATTTACGTTAGTTTGG+AGG 0.492783 3_2:+78708924 Msa0427970:CDS
CAATATCTCCACGGTAGCTA+AGG 0.493540 3_2:-78705738 None:intergenic
GAAACTTATGTGGGAGGTGA+TGG 0.494098 3_2:+78709267 Msa0427970:three_prime_UTR
AGCGTGAATTGCAGCGGCAG+TGG 0.495378 3_2:+78703738 Msa0427970:five_prime_UTR
TGCTGCCTCTTTCTCGACGA+AGG 0.495845 3_2:-78708834 None:intergenic
CAAAATCTACGTACTTCTGC+AGG 0.497196 3_2:+78709571 Msa0427970:three_prime_UTR
CGACGAAGGCAAATAGGGGT+TGG 0.498834 3_2:-78708820 None:intergenic
TTTAACTGTTTACTTTCCTG+TGG 0.499525 3_2:+78709039 Msa0427970:CDS
TATCTGCTCTGTGGCTGCAT+GGG 0.499617 3_2:+78708665 Msa0427970:CDS
AGCTACCGTGGAGATATTGT+TGG 0.499909 3_2:+78705742 Msa0427970:CDS
TCCCAAAATGGAGTAGGAAG+TGG 0.501131 3_2:+78709086 Msa0427970:CDS
CATTTATGATTTAGTACCAA+TGG 0.504869 3_2:-78709421 None:intergenic
ACGGTAGCTAAGGTTGGTTC+CGG 0.506142 3_2:-78705728 None:intergenic
AGGCGATGTTTCCAAGACCT+TGG 0.513092 3_2:-78707969 None:intergenic
TGGAATGTAAGAAACTTATG+TGG 0.520890 3_2:+78709257 Msa0427970:three_prime_UTR
AGACACCAAATCCGGCGAGC+AGG 0.523063 3_2:-78708721 None:intergenic
TAACAGCTGTGATAGGATCT+GGG 0.524232 3_2:+78705949 Msa0427970:CDS
AGGCAGCCGCCTTGTGGAGT+CGG 0.524356 3_2:-78703789 None:intergenic
TCCAAATACTATGACGATGA+TGG 0.532295 3_2:+78705793 Msa0427970:CDS
TGACTGTAGACTGGCAAACC+AGG 0.534144 3_2:-78708899 None:intergenic
GCTGGTCTTGGCTCATTGGT+CGG 0.537162 3_2:+78709157 Msa0427970:CDS
CGTGTAAGTGGAGGCAGACA+TGG 0.545555 3_2:-78709543 None:intergenic
CTCGCTGATTGTTATCGTTG+TGG 0.546122 3_2:+78706071 Msa0427970:CDS
CGCCAAAAGCTATCATGTAT+GGG 0.549420 3_2:-78707463 None:intergenic
CATAGTATATCCATAAAAGA+TGG 0.550433 3_2:+78705693 Msa0427970:intron
CAAACTTTATAGAGAGATCA+GGG 0.555815 3_2:+78704130 Msa0427970:five_prime_UTR
GTGGGAGCATGTAGTCCAAA+CGG 0.556209 3_2:-78705922 None:intergenic
CTGCCTAGTGGTGAGGTAGT+CGG 0.556528 3_2:+78703806 Msa0427970:five_prime_UTR
TGGAGATATTGTTGGCATTG+AGG 0.559066 3_2:+78705750 Msa0427970:CDS
ATAGGGGTTGGGCATACACT+TGG 0.560213 3_2:-78708808 None:intergenic
GGGAATGAATAATTCCATCA+AGG 0.562148 3_2:-78709606 None:intergenic
AATCTGAGTCAGGAACCGTT+TGG 0.563153 3_2:+78705907 Msa0427970:intron
TAAGTTTCTTACATTCCAGA+AGG 0.564332 3_2:-78709252 None:intergenic
GCGCCAGGGAACCTGCTCGC+CGG 0.570329 3_2:+78708710 Msa0427970:CDS
TATCCCACAAATCTTAACAC+TGG 0.570920 3_2:-78706396 None:intergenic
GATGGCCGTGTTAAACGGAC+AGG 0.572114 3_2:+78705811 Msa0427970:CDS
GTTTCTTACATTCCAGAAGG+AGG 0.573257 3_2:-78709249 None:intergenic
CTATCACAGCTGTTATAATG+TGG 0.579458 3_2:-78705941 None:intergenic
TGAAGATCCCAAAATGGAGT+AGG 0.579767 3_2:+78709080 Msa0427970:CDS
ATCAAATCTCCACCATCAGA+AGG 0.581249 3_2:+78708590 Msa0427970:CDS
GCCTGGTCTATAGCTCAGAT+GGG 0.582657 3_2:+78705984 Msa0427970:CDS
ATCTCCACGGTAGCTAAGGT+TGG 0.584583 3_2:-78705734 None:intergenic
GATATTGTTGGCATTGAGGA+TGG 0.590897 3_2:+78705754 Msa0427970:CDS
TTGGTACTAAATCATAAATG+AGG 0.591014 3_2:+78709424 Msa0427970:three_prime_UTR
CTTAACTCACATCATGCTCA+TGG 0.591519 3_2:-78706471 None:intergenic
ATCCCACAAATCTTAACACT+GGG 0.591549 3_2:-78706395 None:intergenic
TATCACAGCTGTTATAATGT+GGG 0.593327 3_2:-78705940 None:intergenic
TCTATCTTAATGGGGTCATG+TGG 0.597322 3_2:+78709520 Msa0427970:three_prime_UTR
TCGCCGACTACCTCACCACT+AGG 0.598683 3_2:-78703809 None:intergenic
AAAATGTGCAGCAATTAGGT+AGG 0.598754 3_2:-78704170 None:intergenic
ATTGGACCGCCGACTCCACA+AGG 0.600644 3_2:+78703780 Msa0427970:five_prime_UTR
TTCTCGACGAAGGCAAATAG+GGG 0.607159 3_2:-78708824 None:intergenic
TCCACAAGGCGGCTGCCTAG+TGG 0.608268 3_2:+78703794 Msa0427970:five_prime_UTR
GACTGTAGACTGGCAAACCA+GGG 0.610020 3_2:-78708898 None:intergenic
TTATACCTGTCCGTTTAACA+CGG 0.610345 3_2:-78705816 None:intergenic
AAGGCGGCTGCCTAGTGGTG+AGG 0.610367 3_2:+78703799 Msa0427970:five_prime_UTR
AATCAACATTGCGATGAGAG+TGG 0.611911 3_2:-78708966 None:intergenic
CTGAGCTATAGACCAGGCTA+AGG 0.616886 3_2:-78705979 None:intergenic
TGTACGATATACATCTCCAC+AGG 0.631987 3_2:-78709055 None:intergenic
AAGCGTCGGAACAGTGACCC+CGG 0.633976 3_2:+78707924 Msa0427970:CDS
AAAAGAATATGAATAAGCAA+AGG 0.634204 3_2:-78707989 None:intergenic
ACCCATCTGAGCTATAGACC+AGG 0.634300 3_2:-78705985 None:intergenic
CTTCGTGGTCTATCTTAATG+GGG 0.634365 3_2:+78709512 Msa0427970:three_prime_UTR
GGAATGTAAGAAACTTATGT+GGG 0.635634 3_2:+78709258 Msa0427970:three_prime_UTR
GTGGGAGGTGATGGTTGTAA+CGG 0.638659 3_2:+78709276 Msa0427970:three_prime_UTR
CAGCCGCCTTGTGGAGTCGG+CGG 0.641708 3_2:-78703786 None:intergenic
AGCCTCACAGGAGTAAGCGT+CGG 0.646014 3_2:+78707910 Msa0427970:CDS
AACAGCTGTGATAGGATCTG+GGG 0.646224 3_2:+78705950 Msa0427970:CDS
CAATGCCAACAATATCTCCA+CGG 0.659764 3_2:-78705747 None:intergenic
GGAACCAACCTTAGCTACCG+TGG 0.665944 3_2:+78705730 Msa0427970:CDS
TTTGAACTACGTGTAAGTGG+AGG 0.678296 3_2:-78709552 None:intergenic
TGTTGAAGCGTGAATTGCAG+CGG 0.681101 3_2:+78703732 None:intergenic
TTCCGACGCTTACTCCTGTG+AGG 0.685835 3_2:-78707912 None:intergenic
CAGCCACAATAGATACAATG+AGG 0.686773 3_2:-78709138 None:intergenic
ATGTAAGAAACTTATGTGGG+AGG 0.688654 3_2:+78709261 Msa0427970:three_prime_UTR
GGACCGCCGACTCCACAAGG+CGG 0.742099 3_2:+78703783 Msa0427970:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATACAAAATATTTTTTTG+TGG + chr3_2:78704979-78704998 Msa0427970:intron 10.0%
!!! TTTGATTAAATTTTAAGAAA+CGG - chr3_2:78705434-78705453 None:intergenic 10.0%
!!! AAAAAAAAATCATCTTATTT+CGG - chr3_2:78706591-78706610 None:intergenic 10.0%
!!! ATTTTTTACAAATAGATTAA+AGG - chr3_2:78708038-78708057 None:intergenic 10.0%
!! TATTAAAATTTAACATGATT+TGG - chr3_2:78708083-78708102 None:intergenic 10.0%
!!! AATTTTTGTACTTTTGATAT+CGG - chr3_2:78703839-78703858 None:intergenic 15.0%
!! AACTTATATTAACATCATAA+AGG - chr3_2:78704018-78704037 None:intergenic 15.0%
!! TATTTAGTATACTATTTAGT+TGG + chr3_2:78704793-78704812 Msa0427970:intron 15.0%
!!! TTCTATTGAATTTTAAGAAA+TGG - chr3_2:78705479-78705498 None:intergenic 15.0%
!!! TTGAAGTTATATTTTCTTTA+AGG + chr3_2:78706775-78706794 Msa0427970:intron 15.0%
!!! TGAAGTTATATTTTCTTTAA+GGG + chr3_2:78706776-78706795 Msa0427970:intron 15.0%
!! AAAACACAAAATTAAAGAAA+GGG - chr3_2:78706982-78707001 None:intergenic 15.0%
!!! ACAAATTTTCACTTAATTTT+TGG + chr3_2:78707640-78707659 Msa0427970:intron 15.0%
!!! TTTATCTAATTTTGTTCAAT+TGG + chr3_2:78707856-78707875 Msa0427970:intron 15.0%
!!! TTATAACCTCTTTATTTTTA+AGG + chr3_2:78708229-78708248 Msa0427970:intron 15.0%
!!! GTTATTTTTAACTTCTAAAA+TGG - chr3_2:78708295-78708314 None:intergenic 15.0%
!!! AATATAAGTTTCATTTTCAG+TGG + chr3_2:78704028-78704047 Msa0427970:intron 20.0%
!!! ACTCTGTTTTTGTTTTAATT+TGG + chr3_2:78704215-78704234 Msa0427970:intron 20.0%
!!! ATGATTTTTAATTCGTTGTT+TGG + chr3_2:78704244-78704263 Msa0427970:intron 20.0%
!! ACTTCCTTAATAACAATATT+TGG - chr3_2:78704495-78704514 None:intergenic 20.0%
!!! AAGGAAGTTTTGTTTTTATT+TGG + chr3_2:78704507-78704526 Msa0427970:intron 20.0%
!! GTTTAACGTTAAATTTAAGA+AGG + chr3_2:78704602-78704621 Msa0427970:intron 20.0%
!! TAGTATACTAAATACATACA+CGG - chr3_2:78704787-78704806 None:intergenic 20.0%
!! TTAAACGACAAAATTACAAA+GGG + chr3_2:78705125-78705144 Msa0427970:intron 20.0%
!! TTACAAAACAATTTATCACA+TGG - chr3_2:78706187-78706206 None:intergenic 20.0%
!!! GATGATTTTTTTTTTGCTAT+TGG + chr3_2:78706597-78706616 Msa0427970:intron 20.0%
!!! TAGAAAAAGTTTCTTCTTTT+AGG - chr3_2:78706840-78706859 None:intergenic 20.0%
!! CAAAACACAAAATTAAAGAA+AGG - chr3_2:78706983-78707002 None:intergenic 20.0%
!!! TTCTTTAATTTTGTGTTTTG+TGG + chr3_2:78706983-78707002 Msa0427970:intron 20.0%
!!! TCTTTAATTTTGTGTTTTGT+GGG + chr3_2:78706984-78707003 Msa0427970:intron 20.0%
!! AATTGGAATATATTGAAGTA+TGG - chr3_2:78707161-78707180 None:intergenic 20.0%
!!! TATTATCTAGCTTGATTAAT+TGG - chr3_2:78707178-78707197 None:intergenic 20.0%
!! TGATATATGGTTATATAGTT+TGG + chr3_2:78707315-78707334 Msa0427970:intron 20.0%
!!! TAATTTTGTTCAATTGGTTA+TGG + chr3_2:78707862-78707881 Msa0427970:intron 20.0%
!! AAAAGAATATGAATAAGCAA+AGG - chr3_2:78707992-78708011 None:intergenic 20.0%
!! AAAACACCTTAAAAATAAAG+AGG - chr3_2:78708238-78708257 None:intergenic 20.0%
!!! AGATTAGACATTAATTTGTT+TGG - chr3_2:78708554-78708573 None:intergenic 20.0%
!! AAAACATATTTACGTTAGTT+TGG + chr3_2:78708921-78708940 Msa0427970:CDS 20.0%
!! AAGATACAACACAAATAAAA+TGG - chr3_2:78709495-78709514 None:intergenic 20.0%
!! TCAAAAGTACAAAAATTCTC+TGG + chr3_2:78703842-78703861 Msa0427970:five_prime_UTR 25.0%
! TGAAATTGCAAATTGCAAAT+TGG - chr3_2:78704090-78704109 None:intergenic 25.0%
!!! TTTTAATTCGTTGTTTGGAT+TGG + chr3_2:78704249-78704268 Msa0427970:intron 25.0%
!! GTCTCCAAATATTGTTATTA+AGG + chr3_2:78704488-78704507 Msa0427970:intron 25.0%
!! ATTTAAGAAGGTACAAATTG+CGG + chr3_2:78704614-78704633 Msa0427970:intron 25.0%
!!! AACAGGGATTTTATTTTTTG+TGG + chr3_2:78704831-78704850 Msa0427970:intron 25.0%
!!! ACAGGGATTTTATTTTTTGT+GGG + chr3_2:78704832-78704851 Msa0427970:intron 25.0%
!! TGGAATGATCTTTTATTGAA+GGG + chr3_2:78704999-78705018 Msa0427970:intron 25.0%
! GTTAAACGACAAAATTACAA+AGG + chr3_2:78705124-78705143 Msa0427970:intron 25.0%
! GTAGATGATTATCAAAATCT+GGG - chr3_2:78705284-78705303 None:intergenic 25.0%
! AGTAGATGATTATCAAAATC+TGG - chr3_2:78705285-78705304 None:intergenic 25.0%
! TGATAATCATCTACTCTAAA+TGG + chr3_2:78705290-78705309 Msa0427970:intron 25.0%
! TTAATCTGAACTTTCTCATA+AGG + chr3_2:78705405-78705424 Msa0427970:intron 25.0%
! TTAAGAAATGGAAACCTTAT+GGG - chr3_2:78705467-78705486 None:intergenic 25.0%
! TTTAAGAAATGGAAACCTTA+TGG - chr3_2:78705468-78705487 None:intergenic 25.0%
!! CATCTTTTATGGATATACTA+TGG - chr3_2:78705695-78705714 None:intergenic 25.0%
! CATAGTATATCCATAAAAGA+TGG + chr3_2:78705693-78705712 Msa0427970:intron 25.0%
! ATAGTTTCTCTTTCCAAATT+CGG - chr3_2:78706102-78706121 None:intergenic 25.0%
! AAAGAGAAACTATACTTTCA+TGG + chr3_2:78706109-78706128 Msa0427970:CDS 25.0%
!! GTTCAGTATTTGAATCTTTT+CGG + chr3_2:78706419-78706438 Msa0427970:CDS 25.0%
!!! GTTTTAAATTGCACTGTAAA+TGG - chr3_2:78707139-78707158 None:intergenic 25.0%
! GATAATATTAATTCTGTTGC+TGG + chr3_2:78707191-78707210 Msa0427970:intron 25.0%
! CATTTCTTTCTACTGATATA+TGG + chr3_2:78707302-78707321 Msa0427970:intron 25.0%
! ATTGGTTATGGAATAGAAAA+CGG + chr3_2:78707874-78707893 Msa0427970:intron 25.0%
! CATTAGTAAGTAATCTATAG+GGG - chr3_2:78708158-78708177 None:intergenic 25.0%
! GCATTAGTAAGTAATCTATA+GGG - chr3_2:78708159-78708178 None:intergenic 25.0%
! AGCATTAGTAAGTAATCTAT+AGG - chr3_2:78708160-78708179 None:intergenic 25.0%
! AGATTACTTACTAATGCTAT+AGG + chr3_2:78708162-78708181 Msa0427970:intron 25.0%
! AATTCTTCTTATCAGTACTT+AGG - chr3_2:78708355-78708374 None:intergenic 25.0%
! TAACTATTAAGGCTATATCT+TGG - chr3_2:78708380-78708399 None:intergenic 25.0%
!! AGATATAGCCTTAATAGTTA+AGG + chr3_2:78708380-78708399 Msa0427970:intron 25.0%
!! GATATAGCCTTAATAGTTAA+GGG + chr3_2:78708381-78708400 Msa0427970:intron 25.0%
! AATGTCTAATCTAATTACAC+AGG + chr3_2:78708562-78708581 Msa0427970:intron 25.0%
!! TTGAATTCTCTGTCAATTTT+GGG - chr3_2:78708869-78708888 None:intergenic 25.0%
!! TTTGAATTCTCTGTCAATTT+TGG - chr3_2:78708870-78708889 None:intergenic 25.0%
! TTGCATTCAAGAAGAATAAT+TGG + chr3_2:78709343-78709362 Msa0427970:three_prime_UTR 25.0%
!!! TTAATTTGTACCAATACCAT+TGG + chr3_2:78709405-78709424 Msa0427970:three_prime_UTR 25.0%
! CATTTATGATTTAGTACCAA+TGG - chr3_2:78709424-78709443 None:intergenic 25.0%
! TTGGTACTAAATCATAAATG+AGG + chr3_2:78709424-78709443 Msa0427970:three_prime_UTR 25.0%
TCAAACTTTATAGAGAGATC+AGG + chr3_2:78704129-78704148 Msa0427970:five_prime_UTR 30.0%
CAAACTTTATAGAGAGATCA+GGG + chr3_2:78704130-78704149 Msa0427970:five_prime_UTR 30.0%
TAAAACAAAAACAGAGTGTG+TGG - chr3_2:78704212-78704231 None:intergenic 30.0%
!! CTGAACTTAACTTGTTAATC+TGG + chr3_2:78704340-78704359 Msa0427970:intron 30.0%
!! CTTAACTTGTTAATCTGGTT+TGG + chr3_2:78704345-78704364 Msa0427970:intron 30.0%
!! TTTTCTGTTTCTTTATGACC+TGG + chr3_2:78704383-78704402 Msa0427970:intron 30.0%
! TTTCTGTTTCTTTATGACCT+GGG + chr3_2:78704384-78704403 Msa0427970:intron 30.0%
CACACAAACACATTTAATAC+AGG + chr3_2:78704675-78704694 Msa0427970:intron 30.0%
AAATACATACACGGAATGAT+AGG - chr3_2:78704778-78704797 None:intergenic 30.0%
ATACTATTTAGTTGGTCAGT+TGG + chr3_2:78704801-78704820 Msa0427970:intron 30.0%
TACTATTTAGTTGGTCAGTT+GGG + chr3_2:78704802-78704821 Msa0427970:intron 30.0%
! TGGGATGATCTTTTATACAA+GGG + chr3_2:78704851-78704870 Msa0427970:intron 30.0%
! GATCTTTTATACAAGGGATT+TGG + chr3_2:78704857-78704876 Msa0427970:intron 30.0%
! GTGGAATGATCTTTTATTGA+AGG + chr3_2:78704998-78705017 Msa0427970:intron 30.0%
! GATCTTTTATTGAAGGGATT+TGG + chr3_2:78705005-78705024 Msa0427970:intron 30.0%
ACAAAATTACAAAGGGAACA+TGG + chr3_2:78705132-78705151 Msa0427970:intron 30.0%
ATTTATCCGGCAAAGAAAAA+GGG + chr3_2:78705205-78705224 Msa0427970:intron 30.0%
! ATGGTTATTTGCTTCTGAAA+TGG - chr3_2:78705346-78705365 None:intergenic 30.0%
! CACTCATTTTGCCAAAATTT+TGG + chr3_2:78705369-78705388 Msa0427970:intron 30.0%
TTCAGATTAAAAATCCCAAG+TGG - chr3_2:78705395-78705414 None:intergenic 30.0%
CAAATTTGAACTTTCCCATA+AGG + chr3_2:78705450-78705469 Msa0427970:intron 30.0%
TATTGGAATAGATCGGTTAT+CGG - chr3_2:78705528-78705547 None:intergenic 30.0%
! TGTGTAGTATTGGAATAGAT+CGG - chr3_2:78705535-78705554 None:intergenic 30.0%
TCAAGTAAACTGTGTAGTAT+TGG - chr3_2:78705545-78705564 None:intergenic 30.0%
! TTTTATGGATATACTATGGC+AGG - chr3_2:78705691-78705710 None:intergenic 30.0%
AATATCATATCACCGAATCA+AGG - chr3_2:78705878-78705897 None:intergenic 30.0%
TATCACAGCTGTTATAATGT+GGG - chr3_2:78705943-78705962 None:intergenic 30.0%
GATGATGCTGAAAAATATCA+TGG - chr3_2:78706030-78706049 None:intergenic 30.0%
AACTACAGACATAGAAACTT+GGG - chr3_2:78706260-78706279 None:intergenic 30.0%
ACACGTTATAATGCATGTTA+TGG - chr3_2:78706363-78706382 None:intergenic 30.0%
GTGTTTGTTTGCGTTTAATT+GGG - chr3_2:78706641-78706660 None:intergenic 30.0%
TGTGTTTGTTTGCGTTTAAT+TGG - chr3_2:78706642-78706661 None:intergenic 30.0%
!! TTGTTTGAATCAGCTGATTT+TGG + chr3_2:78707367-78707386 Msa0427970:intron 30.0%
! GAAAATCTGGAATTTGAGAA+AGG - chr3_2:78707502-78707521 None:intergenic 30.0%
! TTCCAGATTTTCATAACATG+TGG + chr3_2:78707510-78707529 Msa0427970:CDS 30.0%
TGTATCGAACAAATTGAAGT+AGG - chr3_2:78707623-78707642 None:intergenic 30.0%
CTATAGTTCAAGACTTCAAA+GGG - chr3_2:78707687-78707706 None:intergenic 30.0%
TTACTGCAGAAAACTTCTTA+CGG + chr3_2:78707709-78707728 Msa0427970:intron 30.0%
CTTCTTACGGTTTAAAAATG+TGG + chr3_2:78707722-78707741 Msa0427970:intron 30.0%
CTTGAACTTATAAACTGTGT+AGG - chr3_2:78707789-78707808 None:intergenic 30.0%
AATAGAAAACGGTACTGTTA+TGG + chr3_2:78707885-78707904 Msa0427970:intron 30.0%
ATAGAAAACGGTACTGTTAT+GGG + chr3_2:78707886-78707905 Msa0427970:intron 30.0%
! TTCATATTCTTTTGTTCTCC+TGG + chr3_2:78707999-78708018 Msa0427970:CDS 30.0%
AAAAAACCTTTAGCATGTGA+GGG - chr3_2:78708198-78708217 None:intergenic 30.0%
TAAAAAACCTTTAGCATGTG+AGG - chr3_2:78708199-78708218 None:intergenic 30.0%
ATATGCACCCTTAACTATTA+AGG - chr3_2:78708391-78708410 None:intergenic 30.0%
! AATAGTTAAGGGTGCATATT+AGG + chr3_2:78708392-78708411 Msa0427970:intron 30.0%
!! CAACATGTAAGTGATTTGTT+TGG - chr3_2:78708495-78708514 None:intergenic 30.0%
GAATTCAAAGTTAAAATCCC+TGG + chr3_2:78708881-78708900 Msa0427970:CDS 30.0%
!!! AATATGTTTTGACTGTAGAC+TGG - chr3_2:78708911-78708930 None:intergenic 30.0%
! ACATATTTACGTTAGTTTGG+AGG + chr3_2:78708924-78708943 Msa0427970:CDS 30.0%
ACAGGAAAGTAAACAGTTAA+AGG - chr3_2:78709040-78709059 None:intergenic 30.0%
TTTAACTGTTTACTTTCCTG+TGG + chr3_2:78709039-78709058 Msa0427970:CDS 30.0%
TACAAATGAAGATCCCAAAA+TGG + chr3_2:78709074-78709093 Msa0427970:CDS 30.0%
GTTTAATTCGATAAGCTGAA+TGG - chr3_2:78709211-78709230 None:intergenic 30.0%
TAAGTTTCTTACATTCCAGA+AGG - chr3_2:78709255-78709274 None:intergenic 30.0%
TGGAATGTAAGAAACTTATG+TGG + chr3_2:78709257-78709276 Msa0427970:three_prime_UTR 30.0%
GGAATGTAAGAAACTTATGT+GGG + chr3_2:78709258-78709277 Msa0427970:three_prime_UTR 30.0%
! TTGGGATCTTATTTCATAAG+TGG + chr3_2:78709304-78709323 Msa0427970:three_prime_UTR 30.0%
ATTCTTCTTGAATGCAACTT+CGG - chr3_2:78709340-78709359 None:intergenic 30.0%
TGATTTAGTACCAATGGTAT+TGG - chr3_2:78709418-78709437 None:intergenic 30.0%
GTTATAATTGATGCTGTGAT+AGG + chr3_2:78709446-78709465 Msa0427970:three_prime_UTR 30.0%
TTATTTGTGTTGTATCTTCG+TGG + chr3_2:78709497-78709516 Msa0427970:three_prime_UTR 30.0%
TTCATTTACAGACGCCTAAT+TGG + chr3_2:78703762-78703781 Msa0427970:five_prime_UTR 35.0%
!!! TCCCTTTTAATTTTGACCAC+TGG + chr3_2:78703921-78703940 Msa0427970:intron 35.0%
GCCAGTGGTCAAAATTAAAA+GGG - chr3_2:78703925-78703944 None:intergenic 35.0%
AGCCAGTGGTCAAAATTAAA+AGG - chr3_2:78703926-78703945 None:intergenic 35.0%
TTCACTAAAAATAGAGCCAG+TGG - chr3_2:78703940-78703959 None:intergenic 35.0%
ATTTCAGAATCTCTCACTCT+TGG + chr3_2:78704104-78704123 Msa0427970:intron 35.0%
AAAATGTGCAGCAATTAGGT+AGG - chr3_2:78704173-78704192 None:intergenic 35.0%
AACGAAAATGTGCAGCAATT+AGG - chr3_2:78704177-78704196 None:intergenic 35.0%
TTCTTTATGACCTGGGTAAT+TGG + chr3_2:78704391-78704410 Msa0427970:intron 35.0%
! ACTGATTCTTAGCATGTGTT+TGG + chr3_2:78704531-78704550 Msa0427970:intron 35.0%
TTCTTAGCATGTGTTTGGAT+TGG + chr3_2:78704536-78704555 Msa0427970:intron 35.0%
AGATAACTATTGTGACGTGA+AGG - chr3_2:78704562-78704581 None:intergenic 35.0%
TATCTTCTCCTTTAGACATG+CGG - chr3_2:78704650-78704669 None:intergenic 35.0%
! TTCAATGTCAGGTTGTTACT+CGG - chr3_2:78704733-78704752 None:intergenic 35.0%
! GTGGGATGATCTTTTATACA+AGG + chr3_2:78704850-78704869 Msa0427970:intron 35.0%
!! GATTTGGCTTGAGTGAAATA+AGG + chr3_2:78704873-78704892 Msa0427970:intron 35.0%
AAATTACAAAGGGAACATGG+AGG + chr3_2:78705135-78705154 Msa0427970:intron 35.0%
AATTACAAAGGGAACATGGA+GGG + chr3_2:78705136-78705155 Msa0427970:intron 35.0%
CATTTATCCGGCAAAGAAAA+AGG + chr3_2:78705204-78705223 Msa0427970:intron 35.0%
TTTATCCGGCAAAGAAAAAG+GGG + chr3_2:78705206-78705225 Msa0427970:intron 35.0%
! TTTAACTTCACTCTCAAGTG+AGG - chr3_2:78705245-78705264 None:intergenic 35.0%
AAGTTAAATCCCAATGTGAG+TGG + chr3_2:78705257-78705276 Msa0427970:intron 35.0%
TTTGGCAAAATGAGTGTACA+TGG - chr3_2:78705365-78705384 None:intergenic 35.0%
ATTGGAATAGATCGGTTATC+GGG - chr3_2:78705527-78705546 None:intergenic 35.0%
AAAGCATGCACAAAAGAAAG+AGG - chr3_2:78705586-78705605 None:intergenic 35.0%
! GAGTGTTCTACCATCTTTTA+TGG - chr3_2:78705706-78705725 None:intergenic 35.0%
TCCAAATACTATGACGATGA+TGG + chr3_2:78705793-78705812 Msa0427970:CDS 35.0%
TTATACCTGTCCGTTTAACA+CGG - chr3_2:78705819-78705838 None:intergenic 35.0%
CTATCACAGCTGTTATAATG+TGG - chr3_2:78705944-78705963 None:intergenic 35.0%
CACATTATAACAGCTGTGAT+AGG + chr3_2:78705942-78705961 Msa0427970:CDS 35.0%
CTGAAAAATATCATGGATCC+AGG - chr3_2:78706023-78706042 None:intergenic 35.0%
GATGCAGTTAGTAACATTCT+TGG + chr3_2:78706131-78706150 Msa0427970:CDS 35.0%
CAACTACAGACATAGAAACT+TGG - chr3_2:78706261-78706280 None:intergenic 35.0%
! TGCATTATAACGTGTTTTGC+AGG + chr3_2:78706368-78706387 Msa0427970:intron 35.0%
! ATTATAACGTGTTTTGCAGG+CGG + chr3_2:78706371-78706390 Msa0427970:intron 35.0%
ATCCCACAAATCTTAACACT+GGG - chr3_2:78706398-78706417 None:intergenic 35.0%
TATCCCACAAATCTTAACAC+TGG - chr3_2:78706399-78706418 None:intergenic 35.0%
!! AATCTTTTCGGAAGTGCAAT+AGG + chr3_2:78706431-78706450 Msa0427970:CDS 35.0%
!!! TTTTTTTGCTATTGGCCAAG+TGG + chr3_2:78706605-78706624 Msa0427970:intron 35.0%
TGTTACAAGTTACAACCTAG+TGG - chr3_2:78706739-78706758 None:intergenic 35.0%
TTTCTTAACATGTGCCCTTA+GGG - chr3_2:78706817-78706836 None:intergenic 35.0%
!! AATCATTAACTTGTGCCTTG+AGG + chr3_2:78706940-78706959 Msa0427970:intron 35.0%
!! ATCATTAACTTGTGCCTTGA+GGG + chr3_2:78706941-78706960 Msa0427970:intron 35.0%
! TGTGTTTTGTGGGATTCAAA+TGG + chr3_2:78706994-78707013 Msa0427970:intron 35.0%
! CTGGCAGTTGCATTTTATTA+TGG + chr3_2:78707210-78707229 Msa0427970:intron 35.0%
TGATGACAGTTGAACTTGTA+TGG + chr3_2:78707339-78707358 Msa0427970:intron 35.0%
GATGACAGTTGAACTTGTAT+GGG + chr3_2:78707340-78707359 Msa0427970:intron 35.0%
AAAGACGCATGTCATATTTC+AGG + chr3_2:78707437-78707456 Msa0427970:CDS 35.0%
! AACCCATACATGATAGCTTT+TGG + chr3_2:78707461-78707480 Msa0427970:CDS 35.0%
CACCACATGTTATGAAAATC+TGG - chr3_2:78707515-78707534 None:intergenic 35.0%
! CAGATTTTCATAACATGTGG+TGG + chr3_2:78707513-78707532 Msa0427970:CDS 35.0%
AGGTATATAACCTGCAACTT+TGG - chr3_2:78707603-78707622 None:intergenic 35.0%
CCTATAGTTCAAGACTTCAA+AGG - chr3_2:78707688-78707707 None:intergenic 35.0%
!! CCTTTGAAGTCTTGAACTAT+AGG + chr3_2:78707685-78707704 Msa0427970:intron 35.0%
! TTTTCTGCATGTGATCTGAT+AGG - chr3_2:78707765-78707784 None:intergenic 35.0%
! TTTTGTTCTCCTGGAAATTC+AGG + chr3_2:78708008-78708027 Msa0427970:CDS 35.0%
AAAAACCTTTAGCATGTGAG+GGG - chr3_2:78708197-78708216 None:intergenic 35.0%
!! TTCATTGCTTTTCCTTCTGA+TGG - chr3_2:78708605-78708624 None:intergenic 35.0%
! ACAACATTTTATCTGCTCTG+TGG + chr3_2:78708656-78708675 Msa0427970:CDS 35.0%
! TGGTGTCTCAAAAGCATATT+GGG + chr3_2:78708736-78708755 Msa0427970:CDS 35.0%
! GCTATCGTTATTCACCTTTT+TGG + chr3_2:78708779-78708798 Msa0427970:CDS 35.0%
AGAAAGAGGCAGCAAAAAAA+TGG + chr3_2:78708843-78708862 Msa0427970:CDS 35.0%
!! TCCATTTTTCAACGACGTTT+TGG + chr3_2:78708988-78709007 Msa0427970:CDS 35.0%
!! CCATTTTTCAACGACGTTTT+GGG + chr3_2:78708989-78709008 Msa0427970:CDS 35.0%
! TGAATGGTTTGTATTTCTGC+AGG - chr3_2:78709195-78709214 None:intergenic 35.0%
! AGGAGGCAATAGATTTTATG+TGG - chr3_2:78709235-78709254 None:intergenic 35.0%
TAAAATCTATTGCCTCCTTC+TGG + chr3_2:78709237-78709256 Msa0427970:three_prime_UTR 35.0%
ATGTAAGAAACTTATGTGGG+AGG + chr3_2:78709261-78709280 Msa0427970:three_prime_UTR 35.0%
TTCTTCTTGAATGCAACTTC+GGG - chr3_2:78709339-78709358 None:intergenic 35.0%
ATCTTCGTGGTCTATCTTAA+TGG + chr3_2:78709510-78709529 Msa0427970:three_prime_UTR 35.0%
TCTTCGTGGTCTATCTTAAT+GGG + chr3_2:78709511-78709530 Msa0427970:three_prime_UTR 35.0%
! GATTTTGAACTACGTGTAAG+TGG - chr3_2:78709558-78709577 None:intergenic 35.0%
GTACTTCTGCAGGAAATATT+TGG + chr3_2:78709581-78709600 Msa0427970:three_prime_UTR 35.0%
GGGAATGAATAATTCCATCA+AGG - chr3_2:78709609-78709628 None:intergenic 35.0%
TGCAGCAATTAGGTAGGAAT+TGG - chr3_2:78704167-78704186 None:intergenic 40.0%
AACATAGCGTCTTCAATGTC+AGG - chr3_2:78704744-78704763 None:intergenic 40.0%
!!! GTCAGTTGGGTTTTGAAACA+GGG + chr3_2:78704815-78704834 Msa0427970:intron 40.0%
! GATTTGGCTCGAGTGAAATA+AGG + chr3_2:78705021-78705040 Msa0427970:intron 40.0%
TTATCCGGCAAAGAAAAAGG+GGG + chr3_2:78705207-78705226 Msa0427970:intron 40.0%
! TTTACCCCCTTTTTCTTTGC+CGG - chr3_2:78705214-78705233 None:intergenic 40.0%
CACTCTCAAGTGAGGATAAA+TGG - chr3_2:78705237-78705256 None:intergenic 40.0%
!! TTGCCAAAATTTTGGCCACT+TGG + chr3_2:78705377-78705396 Msa0427970:intron 40.0%
!! TGCCAAAATTTTGGCCACTT+GGG + chr3_2:78705378-78705397 Msa0427970:intron 40.0%
! ATCCCAAGTGGCCAAAATTT+TGG - chr3_2:78705383-78705402 None:intergenic 40.0%
GGTTATCGGGTAAAATGAGA+GGG - chr3_2:78705514-78705533 None:intergenic 40.0%
CATGCACAAAAGAAAGAGGT+TGG - chr3_2:78705582-78705601 None:intergenic 40.0%
GTTGCATTCACAGATCACAA+AGG - chr3_2:78705611-78705630 None:intergenic 40.0%
TGGCAGGACAAATATAAGTG+AGG - chr3_2:78705675-78705694 None:intergenic 40.0%
AAGATGGTAGAACACTCTTC+CGG + chr3_2:78705709-78705728 Msa0427970:exon 40.0%
CAATGCCAACAATATCTCCA+CGG - chr3_2:78705750-78705769 None:intergenic 40.0%
TGGAGATATTGTTGGCATTG+AGG + chr3_2:78705750-78705769 Msa0427970:CDS 40.0%
! GATATTGTTGGCATTGAGGA+TGG + chr3_2:78705754-78705773 Msa0427970:CDS 40.0%
GCCATCATCGTCATAGTATT+TGG - chr3_2:78705797-78705816 None:intergenic 40.0%
CATTTCCTGTGTCCTTGATT+CGG + chr3_2:78705863-78705882 Msa0427970:intron 40.0%
TTGTTGCCTTAATCTGAGTC+AGG + chr3_2:78705897-78705916 Msa0427970:intron 40.0%
ATAACAGCTGTGATAGGATC+TGG + chr3_2:78705948-78705967 Msa0427970:CDS 40.0%
TAACAGCTGTGATAGGATCT+GGG + chr3_2:78705949-78705968 Msa0427970:CDS 40.0%
CAGACATAGAAACTTGGGAT+AGG - chr3_2:78706255-78706274 None:intergenic 40.0%
! TTATAACGTGTTTTGCAGGC+GGG + chr3_2:78706372-78706391 Msa0427970:intron 40.0%
CTTAACTCACATCATGCTCA+TGG - chr3_2:78706474-78706493 None:intergenic 40.0%
CATGAGCATGATGTGAGTTA+AGG + chr3_2:78706472-78706491 Msa0427970:intron 40.0%
!! GTCATTTTATGTGGAGTCCA+CGG - chr3_2:78706704-78706723 None:intergenic 40.0%
CAAGTTACAACCTAGTGGTT+TGG - chr3_2:78706734-78706753 None:intergenic 40.0%
! GGTTGTAACTTGTAACAACG+AGG + chr3_2:78706742-78706761 Msa0427970:intron 40.0%
!! TAGTGTTAACTTGTGCCCTA+AGG + chr3_2:78706799-78706818 Msa0427970:intron 40.0%
!! AGTGTTAACTTGTGCCCTAA+GGG + chr3_2:78706800-78706819 Msa0427970:intron 40.0%
GTTTCTTAACATGTGCCCTT+AGG - chr3_2:78706818-78706837 None:intergenic 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG - chr3_2:78706958-78706977 None:intergenic 40.0%
!!! ATCAGCTGATTTTGGTTGAC+AGG + chr3_2:78707375-78707394 Msa0427970:intron 40.0%
!!! TCAGCTGATTTTGGTTGACA+GGG + chr3_2:78707376-78707395 Msa0427970:intron 40.0%
TTATGTGTCCATACCTCTGA+TGG + chr3_2:78707413-78707432 Msa0427970:CDS 40.0%
CGCCAAAAGCTATCATGTAT+GGG - chr3_2:78707466-78707485 None:intergenic 40.0%
ACGCCAAAAGCTATCATGTA+TGG - chr3_2:78707467-78707486 None:intergenic 40.0%
! ATACATGATAGCTTTTGGCG+TGG + chr3_2:78707466-78707485 Msa0427970:CDS 40.0%
CTTGGAATTTCCAAAGTTGC+AGG + chr3_2:78707590-78707609 Msa0427970:CDS 40.0%
!! GAAAACCCCCCATACTTTTT+GGG - chr3_2:78707950-78707969 None:intergenic 40.0%
! AAAGGTGTACCTGAATTTCC+AGG - chr3_2:78708020-78708039 None:intergenic 40.0%
AAAACCTTTAGCATGTGAGG+GGG - chr3_2:78708196-78708215 None:intergenic 40.0%
ATCAAATCTCCACCATCAGA+AGG + chr3_2:78708590-78708609 Msa0427970:CDS 40.0%
!! ATTGCTTTTCCTTCTGATGG+TGG - chr3_2:78708602-78708621 None:intergenic 40.0%
ACACTTGGTATGCTCCAAAA+AGG - chr3_2:78708796-78708815 None:intergenic 40.0%
TTTCTCGACGAAGGCAAATA+GGG - chr3_2:78708828-78708847 None:intergenic 40.0%
AATCAACATTGCGATGAGAG+TGG - chr3_2:78708969-78708988 None:intergenic 40.0%
CCCAAAACGTCGTTGAAAAA+TGG - chr3_2:78708992-78709011 None:intergenic 40.0%
TGTACGATATACATCTCCAC+AGG - chr3_2:78709058-78709077 None:intergenic 40.0%
TGAAGATCCCAAAATGGAGT+AGG + chr3_2:78709080-78709099 Msa0427970:CDS 40.0%
! TCCACTTCCTACTCCATTTT+GGG - chr3_2:78709090-78709109 None:intergenic 40.0%
! ATCCACTTCCTACTCCATTT+TGG - chr3_2:78709091-78709110 None:intergenic 40.0%
!! GAGTAGGAAGTGGATTATTC+TGG + chr3_2:78709096-78709115 Msa0427970:CDS 40.0%
CTGCCTCATTGTATCTATTG+TGG + chr3_2:78709135-78709154 Msa0427970:CDS 40.0%
CAGCCACAATAGATACAATG+AGG - chr3_2:78709141-78709160 None:intergenic 40.0%
CTCATTGTATCTATTGTGGC+TGG + chr3_2:78709139-78709158 Msa0427970:CDS 40.0%
GTTTCTTACATTCCAGAAGG+AGG - chr3_2:78709252-78709271 None:intergenic 40.0%
ATGGTTGTAACGGTCTTCTT+GGG + chr3_2:78709286-78709305 Msa0427970:three_prime_UTR 40.0%
CTTCGTGGTCTATCTTAATG+GGG + chr3_2:78709512-78709531 Msa0427970:three_prime_UTR 40.0%
TCTATCTTAATGGGGTCATG+TGG + chr3_2:78709520-78709539 Msa0427970:three_prime_UTR 40.0%
TTTGAACTACGTGTAAGTGG+AGG - chr3_2:78709555-78709574 None:intergenic 40.0%
CAAAATCTACGTACTTCTGC+AGG + chr3_2:78709571-78709590 Msa0427970:three_prime_UTR 40.0%
! GGAAATATTTGGAGCCTTGA+TGG + chr3_2:78709592-78709611 Msa0427970:three_prime_UTR 40.0%
! GCACATTTTCGTTAACTGCC+AGG + chr3_2:78704184-78704203 Msa0427970:five_prime_UTR 45.0%
AAAACAGAGTGTGTGGTACC+TGG - chr3_2:78704205-78704224 None:intergenic 45.0%
AAACACGACACCAATTACCC+AGG - chr3_2:78704404-78704423 None:intergenic 45.0%
! GAAGGTACAAATTGCGGCTT+TGG + chr3_2:78704620-78704639 Msa0427970:intron 45.0%
TTGGATTGCCGCATGTCTAA+AGG + chr3_2:78704639-78704658 Msa0427970:intron 45.0%
!!! GGTCAGTTGGGTTTTGAAAC+AGG + chr3_2:78704814-78704833 Msa0427970:intron 45.0%
CATGGAGGGATACATACAAC+AGG + chr3_2:78705150-78705169 Msa0427970:intron 45.0%
! TTCTTGCAGAAAGTGTGTCC+TGG + chr3_2:78705175-78705194 Msa0427970:intron 45.0%
! TCTTGCAGAAAGTGTGTCCT+GGG + chr3_2:78705176-78705195 Msa0427970:intron 45.0%
TCCTGGGGTCAACATTTATC+CGG + chr3_2:78705192-78705211 Msa0427970:intron 45.0%
AATCTGGGTCCACTCACATT+GGG - chr3_2:78705269-78705288 None:intergenic 45.0%
AAATCTGGGTCCACTCACAT+TGG - chr3_2:78705270-78705289 None:intergenic 45.0%
CGGTTATCGGGTAAAATGAG+AGG - chr3_2:78705515-78705534 None:intergenic 45.0%
CAATATCTCCACGGTAGCTA+AGG - chr3_2:78705741-78705760 None:intergenic 45.0%
AGCTACCGTGGAGATATTGT+TGG + chr3_2:78705742-78705761 Msa0427970:CDS 45.0%
! ACGATGATGGCCGTGTTAAA+CGG + chr3_2:78705806-78705825 Msa0427970:CDS 45.0%
TATCACCGAATCAAGGACAC+AGG - chr3_2:78705871-78705890 None:intergenic 45.0%
ACGGTTCCTGACTCAGATTA+AGG - chr3_2:78705906-78705925 None:intergenic 45.0%
AATCTGAGTCAGGAACCGTT+TGG + chr3_2:78705907-78705926 Msa0427970:intron 45.0%
AACAGCTGTGATAGGATCTG+GGG + chr3_2:78705950-78705969 Msa0427970:CDS 45.0%
! CTCGCTGATTGTTATCGTTG+TGG + chr3_2:78706071-78706090 Msa0427970:CDS 45.0%
GGCCCAGTGTTAAGATTTGT+GGG + chr3_2:78706393-78706412 Msa0427970:CDS 45.0%
GCGTTTAATTGGGCATGTGT+TGG - chr3_2:78706631-78706650 None:intergenic 45.0%
!! GGCTGTGAGGTCATTTTATG+TGG - chr3_2:78706713-78706732 None:intergenic 45.0%
TACCACACAACTGACAAACG+TGG + chr3_2:78707247-78707266 Msa0427970:intron 45.0%
! CGTCTTTTCCATCAGAGGTA+TGG - chr3_2:78707424-78707443 None:intergenic 45.0%
! ACATGCGTCTTTTCCATCAG+AGG - chr3_2:78707429-78707448 None:intergenic 45.0%
TCCACAATTGCTCTTGCTCT+TGG + chr3_2:78707572-78707591 Msa0427970:CDS 45.0%
TCCAAGAGCAAGAGCAATTG+TGG - chr3_2:78707576-78707595 None:intergenic 45.0%
! GGAAAACCCCCCATACTTTT+TGG - chr3_2:78707951-78707970 None:intergenic 45.0%
! AAAGTATGGGGGGTTTTCCA+AGG + chr3_2:78707952-78707971 Msa0427970:CDS 45.0%
!!! TGCATGGGATATGCTGCTTT+TGG + chr3_2:78708680-78708699 Msa0427970:CDS 45.0%
TTCTCGACGAAGGCAAATAG+GGG - chr3_2:78708827-78708846 None:intergenic 45.0%
CTTTCTCGACGAAGGCAAAT+AGG - chr3_2:78708829-78708848 None:intergenic 45.0%
ATTTGCCTTCGTCGAGAAAG+AGG + chr3_2:78708829-78708848 Msa0427970:CDS 45.0%
!!! AACGACGTTTTGGGAGTGAT+TGG + chr3_2:78708998-78709017 Msa0427970:CDS 45.0%
!!! ACGACGTTTTGGGAGTGATT+GGG + chr3_2:78708999-78709018 Msa0427970:CDS 45.0%
!!! TGATTGGGGCATTGGGATTT+TGG + chr3_2:78709014-78709033 Msa0427970:CDS 45.0%
TCCCAAAATGGAGTAGGAAG+TGG + chr3_2:78709086-78709105 Msa0427970:CDS 45.0%
!! GTATCTATTGTGGCTGGTCT+TGG + chr3_2:78709145-78709164 Msa0427970:CDS 45.0%
GAAACTTATGTGGGAGGTGA+TGG + chr3_2:78709267-78709286 Msa0427970:three_prime_UTR 45.0%
GATGGTTGTAACGGTCTTCT+TGG + chr3_2:78709285-78709304 Msa0427970:three_prime_UTR 45.0%
!! AATAATAAATAAAAATTGAA+GGG - chr3_2:78703896-78703915 None:intergenic 5.0%
!! TAATAATAAATAAAAATTGA+AGG - chr3_2:78703897-78703916 None:intergenic 5.0%
!! AAATATAGAAAAAAAATTAT+TGG - chr3_2:78706919-78706938 None:intergenic 5.0%
! CTTGCAGAAAGTGTGTCCTG+GGG + chr3_2:78705177-78705196 Msa0427970:intron 50.0%
! ACGGTAGCTAAGGTTGGTTC+CGG - chr3_2:78705731-78705750 None:intergenic 50.0%
ATCTCCACGGTAGCTAAGGT+TGG - chr3_2:78705737-78705756 None:intergenic 50.0%
! GTGGGAGCATGTAGTCCAAA+CGG - chr3_2:78705925-78705944 None:intergenic 50.0%
CTGAGCTATAGACCAGGCTA+AGG - chr3_2:78705982-78706001 None:intergenic 50.0%
AGCCTGGTCTATAGCTCAGA+TGG + chr3_2:78705983-78706002 Msa0427970:CDS 50.0%
GCCTGGTCTATAGCTCAGAT+GGG + chr3_2:78705984-78706003 Msa0427970:CDS 50.0%
ACCCATCTGAGCTATAGACC+AGG - chr3_2:78705988-78706007 None:intergenic 50.0%
GGTCTATAGCTCAGATGGGT+TGG + chr3_2:78705988-78706007 Msa0427970:CDS 50.0%
CGTTGTGGTGACACCGAATT+TGG + chr3_2:78706086-78706105 Msa0427970:CDS 50.0%
GGGCCCAGTGTTAAGATTTG+TGG + chr3_2:78706392-78706411 Msa0427970:CDS 50.0%
CAAACAAACACACGCACACG+AGG + chr3_2:78706650-78706669 Msa0427970:intron 50.0%
! AACCTAGTGGTTTGGCTGTG+AGG - chr3_2:78706726-78706745 None:intergenic 50.0%
ACTGTTATGGGTAGCCTCAC+AGG + chr3_2:78707898-78707917 Msa0427970:CDS 50.0%
AGGCGATGTTTCCAAGACCT+TGG - chr3_2:78707972-78707991 None:intergenic 50.0%
CATACCCCCTCACATGCTAA+AGG + chr3_2:78708189-78708208 Msa0427970:intron 50.0%
TTATCTGCTCTGTGGCTGCA+TGG + chr3_2:78708664-78708683 Msa0427970:CDS 50.0%
TATCTGCTCTGTGGCTGCAT+GGG + chr3_2:78708665-78708684 Msa0427970:CDS 50.0%
!! CTTTTGGAGACAATGCGCCA+GGG + chr3_2:78708696-78708715 Msa0427970:CDS 50.0%
ATAGGGGTTGGGCATACACT+TGG - chr3_2:78708811-78708830 None:intergenic 50.0%
GACGAAGGCAAATAGGGGTT+GGG - chr3_2:78708822-78708841 None:intergenic 50.0%
GACTGTAGACTGGCAAACCA+GGG - chr3_2:78708901-78708920 None:intergenic 50.0%
TGACTGTAGACTGGCAAACC+AGG - chr3_2:78708902-78708921 None:intergenic 50.0%
!!! CGACGTTTTGGGAGTGATTG+GGG + chr3_2:78709000-78709019 Msa0427970:CDS 50.0%
TTTGGGAGTGATTGGGGCAT+TGG + chr3_2:78709006-78709025 Msa0427970:CDS 50.0%
! TTGGGAGTGATTGGGGCATT+GGG + chr3_2:78709007-78709026 Msa0427970:CDS 50.0%
! GTGGGAGGTGATGGTTGTAA+CGG + chr3_2:78709276-78709295 Msa0427970:three_prime_UTR 50.0%
CTGCCTAGTGGTGAGGTAGT+CGG + chr3_2:78703806-78703825 Msa0427970:five_prime_UTR 55.0%
GCCGGATAAATGTTGACCCC+AGG - chr3_2:78705196-78705215 None:intergenic 55.0%
GGAACCAACCTTAGCTACCG+TGG + chr3_2:78705730-78705749 Msa0427970:CDS 55.0%
GATGGCCGTGTTAAACGGAC+AGG + chr3_2:78705811-78705830 Msa0427970:CDS 55.0%
!! GCTCAGATGGGTTGGATTGC+TGG + chr3_2:78705996-78706015 Msa0427970:CDS 55.0%
!! ATGGGTTGGATTGCTGGTCC+TGG + chr3_2:78706002-78706021 Msa0427970:CDS 55.0%
! TTGGGCATGTGTTGGCCACT+TGG - chr3_2:78706623-78706642 None:intergenic 55.0%
ACAAACACACGCACACGAGG+AGG + chr3_2:78706653-78706672 Msa0427970:intron 55.0%
CAAACACACGCACACGAGGA+GGG + chr3_2:78706654-78706673 Msa0427970:intron 55.0%
AAACACACGCACACGAGGAG+GGG + chr3_2:78706655-78706674 Msa0427970:intron 55.0%
GACCTCACAGCCAAACCACT+AGG + chr3_2:78706721-78706740 Msa0427970:intron 55.0%
CGCCACGTTTGTCAGTTGTG+TGG - chr3_2:78707252-78707271 None:intergenic 55.0%
AGCCTCACAGGAGTAAGCGT+CGG + chr3_2:78707910-78707929 Msa0427970:CDS 55.0%
TTCCGACGCTTACTCCTGTG+AGG - chr3_2:78707915-78707934 None:intergenic 55.0%
TGACCCCGGCCCAAAAAGTA+TGG + chr3_2:78707938-78707957 Msa0427970:CDS 55.0%
! GACCCCGGCCCAAAAAGTAT+GGG + chr3_2:78707939-78707958 Msa0427970:CDS 55.0%
! ACCCCGGCCCAAAAAGTATG+GGG + chr3_2:78707940-78707959 Msa0427970:CDS 55.0%
!! ACCCCCCATACTTTTTGGGC+CGG - chr3_2:78707946-78707965 None:intergenic 55.0%
! TGGGGGGTTTTCCAAGGTCT+TGG + chr3_2:78707958-78707977 Msa0427970:CDS 55.0%
!! GCTTTTGGAGACAATGCGCC+AGG + chr3_2:78708695-78708714 Msa0427970:CDS 55.0%
CGACGAAGGCAAATAGGGGT+TGG - chr3_2:78708823-78708842 None:intergenic 55.0%
TGCTGCCTCTTTCTCGACGA+AGG - chr3_2:78708837-78708856 None:intergenic 55.0%
!! TGTGGCTGGTCTTGGCTCAT+TGG + chr3_2:78709153-78709172 Msa0427970:CDS 55.0%
!! GCTGGTCTTGGCTCATTGGT+CGG + chr3_2:78709157-78709176 Msa0427970:CDS 55.0%
! TTGGCTCATTGGTCGGTGTC+TGG + chr3_2:78709164-78709183 Msa0427970:CDS 55.0%
CGTGTAAGTGGAGGCAGACA+TGG - chr3_2:78709546-78709565 None:intergenic 55.0%
AGCGTGAATTGCAGCGGCAG+TGG + chr3_2:78703738-78703757 Msa0427970:five_prime_UTR 60.0%
GTGGAGTCGGCGGTCCAATT+AGG - chr3_2:78703779-78703798 None:intergenic 60.0%
!! ATTGGACCGCCGACTCCACA+AGG + chr3_2:78703780-78703799 Msa0427970:five_prime_UTR 60.0%
! TCGCCGACTACCTCACCACT+AGG - chr3_2:78703812-78703831 None:intergenic 60.0%
AACACACGCACACGAGGAGG+GGG + chr3_2:78706656-78706675 Msa0427970:intron 60.0%
GGAGTCCACGGTTTGAACCC+AGG - chr3_2:78706692-78706711 None:intergenic 60.0%
!! AAGCGTCGGAACAGTGACCC+CGG + chr3_2:78707924-78707943 Msa0427970:CDS 60.0%
!! CCCCCATACTTTTTGGGCCG+GGG - chr3_2:78707944-78707963 None:intergenic 60.0%
! CCCCGGCCCAAAAAGTATGG+GGG + chr3_2:78707941-78707960 Msa0427970:CDS 60.0%
!! CCCCCCATACTTTTTGGGCC+GGG - chr3_2:78707945-78707964 None:intergenic 60.0%
! CCCGGCCCAAAAAGTATGGG+GGG + chr3_2:78707942-78707961 Msa0427970:CDS 60.0%
AGGCAGCCGCCTTGTGGAGT+CGG - chr3_2:78703792-78703811 None:intergenic 65.0%
TCCACAAGGCGGCTGCCTAG+TGG + chr3_2:78703794-78703813 Msa0427970:five_prime_UTR 65.0%
ACCACTAGGCAGCCGCCTTG+TGG - chr3_2:78703798-78703817 None:intergenic 65.0%
AAGGCGGCTGCCTAGTGGTG+AGG + chr3_2:78703799-78703818 Msa0427970:five_prime_UTR 65.0%
! CTGGGGTGCTCTCCTTAGCC+TGG + chr3_2:78705967-78705986 Msa0427970:CDS 65.0%
GCACACGAGGAGGGGGAATG+TGG + chr3_2:78706663-78706682 Msa0427970:intron 65.0%
CACGAGGAGGGGGAATGTGG+TGG + chr3_2:78706666-78706685 Msa0427970:intron 65.0%
GAGGGGGAATGTGGTGGCCT+GGG + chr3_2:78706672-78706691 Msa0427970:intron 65.0%
GGTGGCCTGGGTTCAAACCG+TGG + chr3_2:78706684-78706703 Msa0427970:intron 65.0%
AATCCGGCGAGCAGGTTCCC+TGG - chr3_2:78708716-78708735 None:intergenic 65.0%
!! GGACCGCCGACTCCACAAGG+CGG + chr3_2:78703783-78703802 Msa0427970:five_prime_UTR 70.0%
CAGCCGCCTTGTGGAGTCGG+CGG - chr3_2:78703789-78703808 None:intergenic 70.0%
GGAGGGGGAATGTGGTGGCC+TGG + chr3_2:78706671-78706690 Msa0427970:intron 70.0%
GCGCCAGGGAACCTGCTCGC+CGG + chr3_2:78708710-78708729 Msa0427970:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 78703736 78709630 78703736 ID=Msa0427970;Name=Msa0427970
chr3_2 mRNA 78703736 78709630 78703736 ID=Msa0427970-mRNA-1;Parent=Msa0427970;Name=Msa0427970-mRNA-1;_AED=0.29;_eAED=0.29;_QI=237|1|1|1|0.71|0.62|8|402|482
chr3_2 exon 78703736 78703863 78703736 ID=Msa0427970-mRNA-1:exon:20947;Parent=Msa0427970-mRNA-1
chr3_2 exon 78704111 78704205 78704111 ID=Msa0427970-mRNA-1:exon:20948;Parent=Msa0427970-mRNA-1
chr3_2 exon 78705698 78705832 78705698 ID=Msa0427970-mRNA-1:exon:20949;Parent=Msa0427970-mRNA-1
chr3_2 exon 78705919 78706152 78705919 ID=Msa0427970-mRNA-1:exon:20950;Parent=Msa0427970-mRNA-1
chr3_2 exon 78706390 78706483 78706390 ID=Msa0427970-mRNA-1:exon:20951;Parent=Msa0427970-mRNA-1
chr3_2 exon 78707397 78707611 78707397 ID=Msa0427970-mRNA-1:exon:20952;Parent=Msa0427970-mRNA-1
chr3_2 exon 78707890 78708029 78707890 ID=Msa0427970-mRNA-1:exon:20953;Parent=Msa0427970-mRNA-1
chr3_2 exon 78708584 78709630 78708584 ID=Msa0427970-mRNA-1:exon:20954;Parent=Msa0427970-mRNA-1
chr3_2 five_prime_UTR 78703736 78703863 78703736 ID=Msa0427970-mRNA-1:five_prime_utr;Parent=Msa0427970-mRNA-1
chr3_2 five_prime_UTR 78704111 78704205 78704111 ID=Msa0427970-mRNA-1:five_prime_utr;Parent=Msa0427970-mRNA-1
chr3_2 five_prime_UTR 78705698 78705711 78705698 ID=Msa0427970-mRNA-1:five_prime_utr;Parent=Msa0427970-mRNA-1
chr3_2 CDS 78705712 78705832 78705712 ID=Msa0427970-mRNA-1:cds;Parent=Msa0427970-mRNA-1
chr3_2 CDS 78705919 78706152 78705919 ID=Msa0427970-mRNA-1:cds;Parent=Msa0427970-mRNA-1
chr3_2 CDS 78706390 78706483 78706390 ID=Msa0427970-mRNA-1:cds;Parent=Msa0427970-mRNA-1
chr3_2 CDS 78707397 78707611 78707397 ID=Msa0427970-mRNA-1:cds;Parent=Msa0427970-mRNA-1
chr3_2 CDS 78707890 78708029 78707890 ID=Msa0427970-mRNA-1:cds;Parent=Msa0427970-mRNA-1
chr3_2 CDS 78708584 78709228 78708584 ID=Msa0427970-mRNA-1:cds;Parent=Msa0427970-mRNA-1
chr3_2 three_prime_UTR 78709229 78709630 78709229 ID=Msa0427970-mRNA-1:three_prime_utr;Parent=Msa0427970-mRNA-1
Gene Sequence

>Msa0427970

ATGGTAGAACACTCTTCCGGAACCAACCTTAGCTACCGTGGAGATATTGTTGGCATTGAGGATGGCACATCTTTACATGATTCCAAATACTATGACGATGATGGCCGTGTTAAACGGACAGGAACCGTTTGGACTACATGCTCCCACATTATAACAGCTGTGATAGGATCTGGGGTGCTCTCCTTAGCCTGGTCTATAGCTCAGATGGGTTGGATTGCTGGTCCTGGATCCATGATATTTTTCAGCATCATCACTCTGTATACTTCATCATTTCTCGCTGATTGTTATCGTTGTGGTGACACCGAATTTGGAAAGAGAAACTATACTTTCATGGATGCAGTTAGTAACATTCTTGGCGGGCCCAGTGTTAAGATTTGTGGGATAGTTCAGTATTTGAATCTTTTCGGAAGTGCAATAGGATACAATATTGCAGCTGCCATGAGCATGATGGAAATCAGAAAGTCTTTATGTGTCCATACCTCTGATGGAAAAGACGCATGTCATATTTCAGGCAACCCATACATGATAGCTTTTGGCGTGGCACAACTTTTCCTTTCTCAAATTCCAGATTTTCATAACATGTGGTGGCTCTCAATAGTTGCTGCAGTCATGTCTTTCTTCTATTCCACAATTGCTCTTGCTCTTGGAATTTCCAAAGTTGCAGAAAACGGTACTGTTATGGGTAGCCTCACAGGAGTAAGCGTCGGAACAGTGACCCCGGCCCAAAAAGTATGGGGGGTTTTCCAAGGTCTTGGAAACATCGCCTTTGCTTATTCATATTCTTTTGTTCTCCTGGAAATTCAGGACACAATCAAATCTCCACCATCAGAAGGAAAAGCAATGAAGAAAGCTGCGAAGCTAAGTATTGCAGTAACTACAACATTTTATCTGCTCTGTGGCTGCATGGGATATGCTGCTTTTGGAGACAATGCGCCAGGGAACCTGCTCGCCGGATTTGGTGTCTCAAAAGCATATTGGGTTGTAGATGCTGCTAATGCTGCTATCGTTATTCACCTTTTTGGAGCATACCAAGTGTATGCCCAACCCCTATTTGCCTTCGTCGAGAAAGAGGCAGCAAAAAAATGGCCCAAAATTGACAGAGAATTCAAAGTTAAAATCCCTGGTTTGCCAGTCTACAGTCAAAACATATTTACGTTAGTTTGGAGGACAGTGTTTGTTATCATCTCCACTCTCATCGCAATGTTGATTCCATTTTTCAACGACGTTTTGGGAGTGATTGGGGCATTGGGATTTTGGCCTTTAACTGTTTACTTTCCTGTGGAGATGTATATCGTACAAATGAAGATCCCAAAATGGAGTAGGAAGTGGATTATTCTGGAAATAATGAGTACTTTCTGCCTCATTGTATCTATTGTGGCTGGTCTTGGCTCATTGGTCGGTGTCTGGATCGACCTGCAGAAATACAAACCATTCAGCTTATCGAATTAA
Protein sequence

>Msa0427970

MVEHSSGTNLSYRGDIVGIEDGTSLHDSKYYDDDGRVKRTGTVWTTCSHIITAVIGSGVLSLAWSIAQMGWIAGPGSMIFFSIITLYTSSFLADCYRCGDTEFGKRNYTFMDAVSNILGGPSVKICGIVQYLNLFGSAIGYNIAAAMSMMEIRKSLCVHTSDGKDACHISGNPYMIAFGVAQLFLSQIPDFHNMWWLSIVAAVMSFFYSTIALALGISKVAENGTVMGSLTGVSVGTVTPAQKVWGVFQGLGNIAFAYSYSFVLLEIQDTIKSPPSEGKAMKKAAKLSIAVTTTFYLLCGCMGYAAFGDNAPGNLLAGFGVSKAYWVVDAANAAIVIHLFGAYQVYAQPLFAFVEKEAAKKWPKIDREFKVKIPGLPVYSQNIFTLVWRTVFVIISTLIAMLIPFFNDVLGVIGALGFWPLTVYFPVEMYIVQMKIPKWSRKWIILEIMSTFCLIVSIVAGLGSLVGVWIDLQKYKPFSLSN*