Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012810 | Msa0985290 | 0.801000 | 1.107006e-48 | -8.615850e-47 |
| Msa0012820 | Msa0985290 | 0.830419 | 2.968218e-55 | -8.615850e-47 |
| Msa0036580 | Msa0985290 | 0.901478 | 2.573713e-78 | -8.615850e-47 |
| Msa0041270 | Msa0985290 | 0.814960 | 1.180659e-51 | -8.615850e-47 |
| Msa0043120 | Msa0985290 | 0.804587 | 2.011390e-49 | -8.615850e-47 |
| Msa0048950 | Msa0985290 | 0.815759 | 7.839865e-52 | -8.615850e-47 |
| Msa0059880 | Msa0985290 | 0.837181 | 6.048416e-57 | -8.615850e-47 |
| Msa0061600 | Msa0985290 | 0.863223 | 2.902156e-64 | -8.615850e-47 |
| Msa0084390 | Msa0985290 | 0.804633 | 1.966831e-49 | -8.615850e-47 |
| Msa0093530 | Msa0985290 | 0.842627 | 2.303867e-58 | -8.615850e-47 |
| Msa0106120 | Msa0985290 | 0.853107 | 2.972344e-61 | -8.615850e-47 |
| Msa0106130 | Msa0985290 | 0.851855 | 6.763470e-61 | -8.615850e-47 |
| Msa0605460 | Msa0985290 | 0.803868 | 2.838180e-49 | -8.615850e-47 |
| Msa0605470 | Msa0985290 | 0.801242 | 9.876297e-49 | -8.615850e-47 |
| Msa0629030 | Msa0985290 | 0.805945 | 1.044912e-49 | -8.615850e-47 |
| Msa0630130 | Msa0985290 | 0.814233 | 1.709785e-51 | -8.615850e-47 |
| Msa0645100 | Msa0985290 | 0.845482 | 3.950906e-59 | -8.615850e-47 |
| Msa0645120 | Msa0985290 | 0.876641 | 1.188413e-68 | -8.615850e-47 |
| Msa0646040 | Msa0985290 | 0.803672 | 3.118106e-49 | -8.615850e-47 |
| Msa0667640 | Msa0985290 | 0.817010 | 4.116571e-52 | -8.615850e-47 |
| Msa0668210 | Msa0985290 | 0.870559 | 1.331580e-66 | -8.615850e-47 |
| Msa0668220 | Msa0985290 | 0.800988 | 1.113170e-48 | -8.615850e-47 |
| Msa0668230 | Msa0985290 | 0.842707 | 2.193424e-58 | -8.615850e-47 |
| Msa0672780 | Msa0985290 | 0.843543 | 1.313484e-58 | -8.615850e-47 |
| Msa0684590 | Msa0985290 | 0.879970 | 8.066068e-70 | -8.615850e-47 |
| Msa0684600 | Msa0985290 | 0.880395 | 5.686433e-70 | -8.615850e-47 |
| Msa0684720 | Msa0985290 | 0.818285 | 2.122790e-52 | -8.615850e-47 |
| Msa0715260 | Msa0985290 | 0.827101 | 1.883834e-54 | -8.615850e-47 |
| Msa0716600 | Msa0985290 | 0.838275 | 3.168655e-57 | -8.615850e-47 |
| Msa0720660 | Msa0985290 | 0.814548 | 1.456648e-51 | -8.615850e-47 |
| Msa0721260 | Msa0985290 | 0.828566 | 8.371991e-55 | -8.615850e-47 |
| Msa0728520 | Msa0985290 | 0.823473 | 1.359162e-53 | -8.615850e-47 |
| Msa0735280 | Msa0985290 | 0.812831 | 3.478348e-51 | -8.615850e-47 |
| Msa0738570 | Msa0985290 | 0.826248 | 3.010173e-54 | -8.615850e-47 |
| Msa0738660 | Msa0985290 | 0.864608 | 1.075580e-64 | -8.615850e-47 |
| Msa0747500 | Msa0985290 | 0.821756 | 3.409404e-53 | -8.615850e-47 |
| Msa0757240 | Msa0985290 | 0.827039 | 1.949189e-54 | -8.615850e-47 |
| Msa0758000 | Msa0985290 | 0.800172 | 1.632536e-48 | -8.615850e-47 |
| Msa0758150 | Msa0985290 | 0.836029 | 1.188801e-56 | -8.615850e-47 |
| Msa0761250 | Msa0985290 | 0.802678 | 5.004812e-49 | -8.615850e-47 |
| Msa0776340 | Msa0985290 | 0.808780 | 2.617085e-50 | -8.615850e-47 |
| Msa0776540 | Msa0985290 | 0.821506 | 3.893942e-53 | -8.615850e-47 |
| Msa0783580 | Msa0985290 | 0.807486 | 4.938270e-50 | -8.615850e-47 |
| Msa0787860 | Msa0985290 | 0.813438 | 2.559963e-51 | -8.615850e-47 |
| Msa0793060 | Msa0985290 | -0.813362 | 2.659375e-51 | -8.615850e-47 |
| Msa0795330 | Msa0985290 | 0.817056 | 4.019702e-52 | -8.615850e-47 |
| Msa0798230 | Msa0985290 | 0.821557 | 3.790027e-53 | -8.615850e-47 |
| Msa0817100 | Msa0985290 | 0.844437 | 7.565667e-59 | -8.615850e-47 |
| Msa0819110 | Msa0985290 | 0.811684 | 6.189800e-51 | -8.615850e-47 |
| Msa0824860 | Msa0985290 | 0.806502 | 7.973575e-50 | -8.615850e-47 |
| Msa0836740 | Msa0985290 | 0.822423 | 2.387770e-53 | -8.615850e-47 |
| Msa0841800 | Msa0985290 | 0.800561 | 1.360231e-48 | -8.615850e-47 |
| Msa0126960 | Msa0985290 | 0.842674 | 2.239042e-58 | -8.615850e-47 |
| Msa0139270 | Msa0985290 | 0.905503 | 4.006898e-80 | -8.615850e-47 |
| Msa0150910 | Msa0985290 | 0.816713 | 4.797429e-52 | -8.615850e-47 |
| Msa0152740 | Msa0985290 | 0.807961 | 3.913986e-50 | -8.615850e-47 |
| Msa0176620 | Msa0985290 | 0.909592 | 4.805740e-82 | -8.615850e-47 |
| Msa0197750 | Msa0985290 | 0.854921 | 8.920913e-62 | -8.615850e-47 |
| Msa0199860 | Msa0985290 | 0.840357 | 9.131140e-58 | -8.615850e-47 |
| Msa0202060 | Msa0985290 | 0.803041 | 4.211323e-49 | -8.615850e-47 |
| Msa0207930 | Msa0985290 | 0.803358 | 3.621221e-49 | -8.615850e-47 |
| Msa0207970 | Msa0985290 | 0.832666 | 8.299055e-56 | -8.615850e-47 |
| Msa0222070 | Msa0985290 | -0.810339 | 1.210685e-50 | -8.615850e-47 |
| Msa0222120 | Msa0985290 | -0.809173 | 2.156188e-50 | -8.615850e-47 |
| Msa0225910 | Msa0985290 | 0.842765 | 2.117612e-58 | -8.615850e-47 |
| Msa0227290 | Msa0985290 | -0.812659 | 3.792640e-51 | -8.615850e-47 |
| Msa0234120 | Msa0985290 | 0.826351 | 2.844896e-54 | -8.615850e-47 |
| Msa0236610 | Msa0985290 | 0.823650 | 1.235800e-53 | -8.615850e-47 |
| Msa0381950 | Msa0985290 | 0.803150 | 3.999125e-49 | -8.615850e-47 |
| Msa0398690 | Msa0985290 | 0.829191 | 5.910717e-55 | -8.615850e-47 |
| Msa0424240 | Msa0985290 | 0.841052 | 6.003725e-58 | -8.615850e-47 |
| Msa0469550 | Msa0985290 | 0.807864 | 4.103841e-50 | -8.615850e-47 |
| Msa0476420 | Msa0985290 | 0.829810 | 4.180496e-55 | -8.615850e-47 |
| Msa0478400 | Msa0985290 | 0.832384 | 9.749284e-56 | -8.615850e-47 |
| Msa0985250 | Msa0985290 | 0.949481 | 1.165754e-107 | -8.615850e-47 |
| Msa0985260 | Msa0985290 | 0.900122 | 1.004352e-77 | -8.615850e-47 |
| Msa0985290 | Msa0985700 | 0.827963 | 1.169934e-54 | -8.615850e-47 |
| Msa0985290 | Msa0987550 | 0.817680 | 2.908507e-52 | -8.615850e-47 |
| Msa0985290 | Msa0996940 | 0.804060 | 2.589481e-49 | -8.615850e-47 |
| Msa0985290 | Msa1006940 | 0.810173 | 1.314982e-50 | -8.615850e-47 |
| Msa0985290 | Msa1011350 | 0.807721 | 4.401303e-50 | -8.615850e-47 |
| Msa0985290 | Msa1024350 | 0.800553 | 1.365506e-48 | -8.615850e-47 |
| Msa0985290 | Msa1026170 | 0.805397 | 1.361626e-49 | -8.615850e-47 |
| Msa0985290 | Msa1037060 | 0.814564 | 1.444545e-51 | -8.615850e-47 |
| Msa0985290 | Msa1040330 | 0.801256 | 9.808497e-49 | -8.615850e-47 |
| Msa0985290 | Msa1046220 | 0.835861 | 1.311101e-56 | -8.615850e-47 |
| Msa0985290 | Msa1079610 | -0.807961 | 3.912729e-50 | -8.615850e-47 |
| Msa0985290 | Msa1083100 | 0.857054 | 2.119658e-62 | -8.615850e-47 |
| Msa0985290 | Msa1099640 | 0.806401 | 8.373935e-50 | -8.615850e-47 |
| Msa0985290 | Msa1100560 | 0.835197 | 1.930139e-56 | -8.615850e-47 |
| Msa0985290 | Msa1109890 | 0.833536 | 5.040534e-56 | -8.615850e-47 |
| Msa0985290 | Msa1110040 | 0.818263 | 2.147376e-52 | -8.615850e-47 |
| Msa0985290 | Msa1124440 | -0.800628 | 1.318420e-48 | -8.615850e-47 |
| Msa0985290 | Msa1127940 | 0.814273 | 1.675186e-51 | -8.615850e-47 |
| Msa0985290 | Msa1136060 | 0.835770 | 1.382527e-56 | -8.615850e-47 |
| Msa0985290 | Msa1138600 | -0.811681 | 6.199650e-51 | -8.615850e-47 |
| Msa0985290 | Msa1164800 | 0.809850 | 1.543151e-50 | -8.615850e-47 |
| Msa0985290 | Msa1165860 | 0.812758 | 3.608034e-51 | -8.615850e-47 |
| Msa0985290 | Msa1173290 | 0.838080 | 3.555208e-57 | -8.615850e-47 |
| Msa0985290 | Msa1207480 | 0.802662 | 5.043629e-49 | -8.615850e-47 |
| Msa0985290 | Msa1211160 | 0.803314 | 3.697930e-49 | -8.615850e-47 |
| Msa0985290 | Msa1216600 | 0.822900 | 1.849634e-53 | -8.615850e-47 |
| Msa0985290 | Msa1219780 | 0.833255 | 5.922066e-56 | -8.615850e-47 |
| Msa0985290 | Msa1221170 | 0.854112 | 1.529378e-61 | -8.615850e-47 |
| Msa0985290 | Msa1221570 | 0.800761 | 1.238127e-48 | -8.615850e-47 |
| Msa0985290 | Msa1222030 | 0.848019 | 7.999481e-60 | -8.615850e-47 |
| Msa0985290 | Msa1235760 | -0.800362 | 1.493755e-48 | -8.615850e-47 |
| Msa0985290 | Msa1265500 | 0.857806 | 1.269575e-62 | -8.615850e-47 |
| Msa0985290 | Msa1266710 | 0.829724 | 4.386345e-55 | -8.615850e-47 |
| Msa0985290 | Msa1296870 | 0.824458 | 7.983280e-54 | -8.615850e-47 |
| Msa0985290 | Msa1299310 | 0.820959 | 5.205989e-53 | -8.615850e-47 |
| Msa0985290 | Msa1314710 | 0.821150 | 4.704040e-53 | -8.615850e-47 |
| Msa0985290 | Msa1323030 | 0.821262 | 4.432465e-53 | -8.615850e-47 |
| Msa0985290 | Msa1323150 | 0.818541 | 1.857945e-52 | -8.615850e-47 |
| Msa0985290 | Msa1323160 | 0.840555 | 8.102810e-58 | -8.615850e-47 |
| Msa0985290 | Msa1336100 | 0.801455 | 8.929987e-49 | -8.615850e-47 |
| Msa0985290 | Msa1350490 | 0.843438 | 1.401211e-58 | -8.615850e-47 |
| Msa0985290 | Msa1357490 | 0.805310 | 1.420047e-49 | -8.615850e-47 |
| Msa0985290 | Msa1361500 | 0.809442 | 1.888752e-50 | -8.615850e-47 |
| Msa0985290 | Msa1363690 | 0.804322 | 2.283668e-49 | -8.615850e-47 |
| Msa0985290 | Msa1370910 | 0.801875 | 7.325057e-49 | -8.615850e-47 |
| Msa0985290 | Msa1370930 | 0.866524 | 2.677400e-65 | -8.615850e-47 |
| Msa0985290 | Msa1373560 | 0.813075 | 3.075947e-51 | -8.615850e-47 |
| Msa0985290 | Msa1376070 | 0.800097 | 1.691146e-48 | -8.615850e-47 |
| Msa0985290 | Msa1378950 | 0.832941 | 7.093105e-56 | -8.615850e-47 |
| Msa0985290 | Msa1379250 | 0.845668 | 3.518363e-59 | -8.615850e-47 |
| Msa0985290 | Msa1380490 | 0.805599 | 1.234950e-49 | -8.615850e-47 |
| Msa0985290 | Msa1382180 | 0.826278 | 2.961896e-54 | -8.615850e-47 |
| Msa0985290 | Msa1390040 | 0.843211 | 1.611307e-58 | -8.615850e-47 |
| Msa0985290 | Msa1393440 | 0.817686 | 2.898747e-52 | -8.615850e-47 |
| Msa0985290 | Msa1395690 | 0.915650 | 4.575778e-85 | -8.615850e-47 |
| Msa0985290 | Msa1396550 | 0.825880 | 3.682889e-54 | -8.615850e-47 |
| Msa0985290 | Msa1398110 | 0.825873 | 3.696034e-54 | -8.615850e-47 |
| Msa0985290 | Msa1400700 | 0.813139 | 2.977885e-51 | -8.615850e-47 |
| Msa0985290 | Msa1407210 | 0.826411 | 2.752792e-54 | -8.615850e-47 |
| Msa0985290 | Msa1418190 | 0.846472 | 2.126433e-59 | -8.615850e-47 |
| Msa0985290 | Msa1426420 | 0.828663 | 7.932270e-55 | -8.615850e-47 |
| Msa0985290 | Msa1445900 | 0.811931 | 5.469262e-51 | -8.615850e-47 |
| Msa0985290 | Msa1448150 | 0.811396 | 7.149177e-51 | -8.615850e-47 |
| Msa0242390 | Msa0985290 | 0.856996 | 2.204300e-62 | -8.615850e-47 |
| Msa0242700 | Msa0985290 | 0.821896 | 3.163747e-53 | -8.615850e-47 |
| Msa0243970 | Msa0985290 | 0.809550 | 1.789816e-50 | -8.615850e-47 |
| Msa0243990 | Msa0985290 | 0.824647 | 7.208843e-54 | -8.615850e-47 |
| Msa0257930 | Msa0985290 | 0.822678 | 2.083048e-53 | -8.615850e-47 |
| Msa0263620 | Msa0985290 | -0.812210 | 4.753815e-51 | -8.615850e-47 |
| Msa0266640 | Msa0985290 | 0.885254 | 9.525608e-72 | -8.615850e-47 |
| Msa0266650 | Msa0985290 | 0.864854 | 9.011540e-65 | -8.615850e-47 |
| Msa0277280 | Msa0985290 | 0.834076 | 3.693622e-56 | -8.615850e-47 |
| Msa0278950 | Msa0985290 | 0.805202 | 1.495991e-49 | -8.615850e-47 |
| Msa0295520 | Msa0985290 | -0.808778 | 2.620379e-50 | -8.615850e-47 |
| Msa0297650 | Msa0985290 | 0.826282 | 2.955798e-54 | -8.615850e-47 |
| Msa0301460 | Msa0985290 | -0.808925 | 2.436718e-50 | -8.615850e-47 |
| Msa0315300 | Msa0985290 | 0.826542 | 2.562338e-54 | -8.615850e-47 |
| Msa0318370 | Msa0985290 | 0.874728 | 5.383924e-68 | -8.615850e-47 |
| Msa0336640 | Msa0985290 | 0.800542 | 1.372509e-48 | -8.615850e-47 |
| Msa0356200 | Msa0985290 | 0.804442 | 2.155615e-49 | -8.615850e-47 |
| Msa0356250 | Msa0985290 | 0.816280 | 5.998835e-52 | -8.615850e-47 |
| Msa0485290 | Msa0985290 | 0.818808 | 1.615703e-52 | -8.615850e-47 |
| Msa0493710 | Msa0985290 | 0.831678 | 1.456635e-55 | -8.615850e-47 |
| Msa0515260 | Msa0985290 | 0.803648 | 3.152700e-49 | -8.615850e-47 |
| Msa0520430 | Msa0985290 | 0.832743 | 7.943484e-56 | -8.615850e-47 |
| Msa0533510 | Msa0985290 | 0.880981 | 3.507460e-70 | -8.615850e-47 |
| Msa0533520 | Msa0985290 | 0.865733 | 4.767238e-65 | -8.615850e-47 |
| Msa0538450 | Msa0985290 | 0.803521 | 3.349904e-49 | -8.615850e-47 |
| Msa0548760 | Msa0985290 | 0.875398 | 3.180989e-68 | -8.615850e-47 |
| Msa0548770 | Msa0985290 | 0.811425 | 7.045505e-51 | -8.615850e-47 |
| Msa0548970 | Msa0985290 | 0.825352 | 4.913477e-54 | -8.615850e-47 |
| Msa0589450 | Msa0985290 | 0.802744 | 4.850899e-49 | -8.615850e-47 |
| Msa0589720 | Msa0985290 | 0.851586 | 8.059940e-61 | -8.615850e-47 |
| Msa0589730 | Msa0985290 | 0.863132 | 3.096770e-64 | -8.615850e-47 |
| Msa0589750 | Msa0985290 | 0.817756 | 2.795581e-52 | -8.615850e-47 |
| Msa0594320 | Msa0985290 | 0.807488 | 4.931887e-50 | -8.615850e-47 |
| Msa0594330 | Msa0985290 | 0.815028 | 1.140258e-51 | -8.615850e-47 |
| Msa0854380 | Msa0985290 | 0.801693 | 7.982557e-49 | -8.615850e-47 |
| Msa0859230 | Msa0985290 | 0.827113 | 1.872013e-54 | -8.615850e-47 |
| Msa0859250 | Msa0985290 | 0.830193 | 3.370474e-55 | -8.615850e-47 |
| Msa0863840 | Msa0985290 | 0.800587 | 1.343886e-48 | -8.615850e-47 |
| Msa0864160 | Msa0985290 | 0.807521 | 4.853130e-50 | -8.615850e-47 |
| Msa0868870 | Msa0985290 | 0.803081 | 4.133207e-49 | -8.615850e-47 |
| Msa0883610 | Msa0985290 | 0.952576 | 1.799886e-110 | -8.615850e-47 |
| Msa0883640 | Msa0985290 | 0.828976 | 6.661312e-55 | -8.615850e-47 |
| Msa0886370 | Msa0985290 | 0.844756 | 6.209037e-59 | -8.615850e-47 |
| Msa0896990 | Msa0985290 | 0.814574 | 1.437491e-51 | -8.615850e-47 |
| Msa0902340 | Msa0985290 | 0.820455 | 6.798665e-53 | -8.615850e-47 |
| Msa0910570 | Msa0985290 | 0.970064 | 4.720551e-131 | -8.615850e-47 |
| Msa0910590 | Msa0985290 | 0.879376 | 1.310218e-69 | -8.615850e-47 |
| Msa0910830 | Msa0985290 | 0.834520 | 2.859013e-56 | -8.615850e-47 |
| Msa0932930 | Msa0985290 | 0.830162 | 3.429997e-55 | -8.615850e-47 |
| Msa0933580 | Msa0985290 | 0.803800 | 2.932667e-49 | -8.615850e-47 |
| Msa0948430 | Msa0985290 | 0.883539 | 4.119393e-71 | -8.615850e-47 |
| Msa0948460 | Msa0985290 | 0.938304 | 8.390879e-99 | -8.615850e-47 |
| Msa0951060 | Msa0985290 | 0.854961 | 8.680367e-62 | -8.615850e-47 |
| Msa0960090 | Msa0985290 | 0.830469 | 2.886586e-55 | -8.615850e-47 |
| Msa0967820 | Msa0985290 | 0.806843 | 6.756365e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 76 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGAGTAGACGGGTGGAGG+TGG | 0.300627 | 6_4:-31623265 | Msa0985290:three_prime_UTR |
| GGTGAGTAGACGGGTGGAGG+TGG | 0.300627 | 6_4:-31623367 | Msa0985290:three_prime_UTR |
| GGTGAGTAGACGGGTGGAGG+AGG | 0.319166 | 6_4:-31623316 | Msa0985290:three_prime_UTR |
| GGTGAGTAGACGGGTGGAGG+TGG | 0.322204 | 6_4:-31623418 | Msa0985290:three_prime_UTR |
| GGTGACTTGTACTTGTAAAC+TGG | 0.357024 | 6_4:-31623550 | Msa0985290:three_prime_UTR |
| TCCTCCTTACCACTACTAAA+TGG | 0.365236 | 6_4:+31623678 | None:intergenic |
| GGTGAGTAAGCAGGAGGAGG+AGG | 0.413816 | 6_4:-31623622 | Msa0985290:exon |
| GGTGGTGAGTAGACGGGTGG+AGG | 0.432340 | 6_4:-31623319 | Msa0985290:three_prime_UTR |
| GGTGGTGAGTAGACGGGTGG+AGG | 0.441074 | 6_4:-31623268 | Msa0985290:three_prime_UTR |
| GGTGGTGAGTAGACGGGTGG+AGG | 0.441074 | 6_4:-31623370 | Msa0985290:three_prime_UTR |
| GGAGACTTGTATTTGTAAAG+TGG | 0.445599 | 6_4:-31623448 | Msa0985290:three_prime_UTR |
| GGAGACTTATACTTGTAAAC+TGG | 0.445660 | 6_4:-31623601 | Msa0985290:three_prime_UTR |
| GGTGAGTAGACAGGTGGAGG+AGG | 0.447436 | 6_4:-31623469 | Msa0985290:intron |
| GGGGACTTGTACTTGTAAAC+TGG | 0.458453 | 6_4:-31623295 | Msa0985290:three_prime_UTR |
| GGGGACTTGTACTTGTAAAC+TGG | 0.460087 | 6_4:-31623244 | None:intergenic |
| GGGGACTTGTACTTGTAAAC+TGG | 0.460087 | 6_4:-31623346 | Msa0985290:three_prime_UTR |
| GGGGACTTGTACTTGTAAAC+TGG | 0.460087 | 6_4:-31623397 | Msa0985290:three_prime_UTR |
| GGTGGAGGTGGTGAGTAGAC+GGG | 0.461122 | 6_4:-31623427 | Msa0985290:three_prime_UTR |
| GTGAGTAGACGGGTGGAGGT+GGG | 0.465366 | 6_4:-31623264 | Msa0985290:three_prime_UTR |
| GTGAGTAGACGGGTGGAGGT+GGG | 0.465366 | 6_4:-31623366 | Msa0985290:three_prime_UTR |
| GTGAGTAGACGGGTGGAGGT+GGG | 0.465366 | 6_4:-31623417 | Msa0985290:three_prime_UTR |
| GGTGGTGAGTAGACGGGTGG+AGG | 0.466798 | 6_4:-31623421 | Msa0985290:three_prime_UTR |
| GGTGGAGGTGGTGAGTAAGC+AGG | 0.475649 | 6_4:-31623631 | Msa0985290:exon |
| GGTGGTGAGTAAGCAGGAGG+AGG | 0.480025 | 6_4:-31623625 | Msa0985290:exon |
| TACTTGTAAACTGGTGGTGG+TGG | 0.483654 | 6_4:-31623286 | Msa0985290:three_prime_UTR |
| TACTTGTAAACTGGTGGTGG+TGG | 0.483654 | 6_4:-31623388 | Msa0985290:three_prime_UTR |
| GGTGAATAGACAGGAGGAGG+TGG | 0.493408 | 6_4:-31623571 | Msa0985290:three_prime_UTR |
| GACTTGTATTTGTAAAGTGG+TGG | 0.505674 | 6_4:-31623445 | Msa0985290:three_prime_UTR |
| TGGTGGAGGTGGTGAGTAGA+CGG | 0.505748 | 6_4:-31623428 | Msa0985290:three_prime_UTR |
| TGAGTAGACGGGTGGAGGTG+GGG | 0.516214 | 6_4:-31623263 | Msa0985290:three_prime_UTR |
| TGAGTAGACGGGTGGAGGTG+GGG | 0.516214 | 6_4:-31623365 | Msa0985290:three_prime_UTR |
| TGAGTAGACGGGTGGAGGTG+GGG | 0.516214 | 6_4:-31623416 | Msa0985290:three_prime_UTR |
| TACTTGTAAACTGGTGGAGG+TGG | 0.518842 | 6_4:-31623337 | Msa0985290:three_prime_UTR |
| TAGATATAATGTGGTGGAGG+TGG | 0.521642 | 6_4:-31623643 | Msa0985290:exon |
| GTGACTTGTACTTGTAAACT+GGG | 0.523791 | 6_4:-31623549 | Msa0985290:three_prime_UTR |
| GGTGGTGAATAGACAGGAGG+AGG | 0.525145 | 6_4:-31623574 | Msa0985290:three_prime_UTR |
| GTGAGTAGACGGGTGGAGGA+GGG | 0.525831 | 6_4:-31623315 | Msa0985290:three_prime_UTR |
| TGAGTAGACGGGTGGAGGAG+GGG | 0.526670 | 6_4:-31623314 | Msa0985290:three_prime_UTR |
| GGTGGTGGTGGTGAGTAGAC+GGG | 0.529501 | 6_4:-31623274 | Msa0985290:three_prime_UTR |
| GGTGGTGGTGGTGAGTAGAC+GGG | 0.529501 | 6_4:-31623376 | Msa0985290:three_prime_UTR |
| GGTGGAGGTGGTGAGTAGAC+GGG | 0.530290 | 6_4:-31623325 | Msa0985290:three_prime_UTR |
| TTGTACTTGTAAACTGGTGG+TGG | 0.532190 | 6_4:-31623289 | Msa0985290:three_prime_UTR |
| TTGTACTTGTAAACTGGTGG+TGG | 0.532190 | 6_4:-31623391 | Msa0985290:three_prime_UTR |
| TAGTAGTGGTAAGGAGGAGG+TGG | 0.537644 | 6_4:-31623673 | Msa0985290:five_prime_UTR |
| TGGTGGTGGTGGTGAGTAGA+CGG | 0.545412 | 6_4:-31623275 | Msa0985290:three_prime_UTR |
| TGGTGGTGGTGGTGAGTAGA+CGG | 0.545412 | 6_4:-31623377 | Msa0985290:three_prime_UTR |
| TACTTGTAAACTGGTGGAGG+TGG | 0.545632 | 6_4:-31623592 | Msa0985290:three_prime_UTR |
| ACCACCATTTAGTAGTGGTA+AGG | 0.552807 | 6_4:-31623682 | Msa0985290:five_prime_UTR |
| TGGTGGAGGTGGTGAGTAGA+CGG | 0.560893 | 6_4:-31623326 | Msa0985290:three_prime_UTR |
| GGTGGAGGTGGTGAATAGAC+AGG | 0.569201 | 6_4:-31623580 | Msa0985290:three_prime_UTR |
| TATTTGTAAAGTGGTGGAGG+TGG | 0.570617 | 6_4:-31623439 | Msa0985290:three_prime_UTR |
| GACTTGTACTTGTAAACTGG+TGG | 0.575994 | 6_4:-31623394 | Msa0985290:three_prime_UTR |
| GACTTATACTTGTAAACTGG+TGG | 0.580181 | 6_4:-31623598 | Msa0985290:three_prime_UTR |
| GGTGGTGGTGAGTAGACGGG+TGG | 0.586082 | 6_4:-31623271 | Msa0985290:three_prime_UTR |
| GGTGGTGGTGAGTAGACGGG+TGG | 0.586082 | 6_4:-31623373 | Msa0985290:three_prime_UTR |
| TTATACTTGTAAACTGGTGG+AGG | 0.588467 | 6_4:-31623595 | Msa0985290:three_prime_UTR |
| TTGTATTTGTAAAGTGGTGG+AGG | 0.594079 | 6_4:-31623442 | Msa0985290:three_prime_UTR |
| GAGTAGATATAATGTGGTGG+AGG | 0.594587 | 6_4:-31623646 | Msa0985290:exon |
| GGAGGTGGTGAGTAAGCAGG+AGG | 0.598069 | 6_4:-31623628 | Msa0985290:exon |
| TTGTACTTGTAAACTGGTGG+AGG | 0.598373 | 6_4:-31623340 | Msa0985290:three_prime_UTR |
| GACTTGTACTTGTAAACTGG+TGG | 0.601010 | 6_4:-31623343 | Msa0985290:three_prime_UTR |
| ATTTAGTAGTGGTAAGGAGG+AGG | 0.602889 | 6_4:-31623676 | Msa0985290:five_prime_UTR |
| GGAGGTGGTGAGTAGACGGG+TGG | 0.603335 | 6_4:-31623322 | Msa0985290:three_prime_UTR |
| GGAGGTGGTGAGTAGACGGG+TGG | 0.603335 | 6_4:-31623424 | Msa0985290:three_prime_UTR |
| ACCATTTAGTAGTGGTAAGG+AGG | 0.618262 | 6_4:-31623679 | Msa0985290:five_prime_UTR |
| CGTAAACCACCATTTAGTAG+TGG | 0.625237 | 6_4:-31623687 | Msa0985290:five_prime_UTR |
| GGTGAAGAGTAGATATAATG+TGG | 0.631465 | 6_4:-31623652 | Msa0985290:exon |
| GGAGGTGGTGAATAGACAGG+AGG | 0.632836 | 6_4:-31623577 | Msa0985290:three_prime_UTR |
| GAAGAGTAGATATAATGTGG+TGG | 0.646587 | 6_4:-31623649 | Msa0985290:exon |
| TCCTTACCACTACTAAATGG+TGG | 0.648183 | 6_4:+31623681 | None:intergenic |
| GACTTGTACTTGTAAACTGG+TGG | 0.657109 | 6_4:-31623292 | Msa0985290:three_prime_UTR |
| CGTAGGAAGAAGTATACCGT+GGG | 0.663811 | 6_4:-31623717 | None:intergenic |
| GACTTGTACTTGTAAACTGG+GGG | 0.672160 | 6_4:-31623547 | Msa0985290:three_prime_UTR |
| ACGTAGGAAGAAGTATACCG+TGG | 0.705296 | 6_4:-31623718 | None:intergenic |
| TGGTTTACGATAGTATCCCA+CGG | 0.713514 | 6_4:+31623701 | None:intergenic |
| TGACTTGTACTTGTAAACTG+GGG | 0.718901 | 6_4:-31623548 | Msa0985290:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| GGTGAAGAGTAGATATAATG+TGG | - | chr6_4:31623306-31623325 | Msa0985290:three_prime_UTR | 35.0% | |
| GAAGAGTAGATATAATGTGG+TGG | - | chr6_4:31623309-31623328 | Msa0985290:three_prime_UTR | 35.0% | |
| GGAGACTTATACTTGTAAAC+TGG | - | chr6_4:31623357-31623376 | Msa0985290:three_prime_UTR | 35.0% | |
| GACTTATACTTGTAAACTGG+TGG | - | chr6_4:31623360-31623379 | Msa0985290:three_prime_UTR | 35.0% | |
| TTATACTTGTAAACTGGTGG+AGG | - | chr6_4:31623363-31623382 | Msa0985290:three_prime_UTR | 35.0% | |
| ! | GTGACTTGTACTTGTAAACT+GGG | - | chr6_4:31623409-31623428 | Msa0985290:three_prime_UTR | 35.0% |
| ! | TGACTTGTACTTGTAAACTG+GGG | - | chr6_4:31623410-31623429 | Msa0985290:three_prime_UTR | 35.0% |
| ! | GTGACTTGTACTTGTAAACT+GGG | - | chr6_4:31623409-31623428 | Msa0985290:three_prime_UTR | 35.0% |
| ! | TGACTTGTACTTGTAAACTG+GGG | - | chr6_4:31623410-31623429 | Msa0985290:three_prime_UTR | 35.0% |
| GGAGACTTGTATTTGTAAAG+TGG | - | chr6_4:31623510-31623529 | Msa0985290:intron | 35.0% | |
| GACTTGTATTTGTAAAGTGG+TGG | - | chr6_4:31623513-31623532 | Msa0985290:intron | 35.0% | |
| TTGTATTTGTAAAGTGGTGG+AGG | - | chr6_4:31623516-31623535 | Msa0985290:intron | 35.0% | |
| TGGTTTACGATAGTATCCCA+CGG | + | chr6_4:31623260-31623279 | None:intergenic | 40.0% | |
| CGTAAACCACCATTTAGTAG+TGG | - | chr6_4:31623271-31623290 | Msa0985290:three_prime_UTR | 40.0% | |
| ACCACCATTTAGTAGTGGTA+AGG | - | chr6_4:31623276-31623295 | Msa0985290:three_prime_UTR | 40.0% | |
| TCCTTACCACTACTAAATGG+TGG | + | chr6_4:31623280-31623299 | None:intergenic | 40.0% | |
| ACCATTTAGTAGTGGTAAGG+AGG | - | chr6_4:31623279-31623298 | Msa0985290:three_prime_UTR | 40.0% | |
| TCCTCCTTACCACTACTAAA+TGG | + | chr6_4:31623283-31623302 | None:intergenic | 40.0% | |
| ATTTAGTAGTGGTAAGGAGG+AGG | - | chr6_4:31623282-31623301 | Msa0985290:three_prime_UTR | 40.0% | |
| GAGTAGATATAATGTGGTGG+AGG | - | chr6_4:31623312-31623331 | Msa0985290:three_prime_UTR | 40.0% | |
| ! | TAGATATAATGTGGTGGAGG+TGG | - | chr6_4:31623315-31623334 | Msa0985290:three_prime_UTR | 40.0% |
| ! | GGTGACTTGTACTTGTAAAC+TGG | - | chr6_4:31623408-31623427 | Msa0985290:three_prime_UTR | 40.0% |
| GACTTGTACTTGTAAACTGG+GGG | - | chr6_4:31623411-31623430 | Msa0985290:three_prime_UTR | 40.0% | |
| ! | GGTGACTTGTACTTGTAAAC+TGG | - | chr6_4:31623408-31623427 | Msa0985290:three_prime_UTR | 40.0% |
| GACTTGTACTTGTAAACTGG+GGG | - | chr6_4:31623411-31623430 | Msa0985290:three_prime_UTR | 40.0% | |
| ! | TATTTGTAAAGTGGTGGAGG+TGG | - | chr6_4:31623519-31623538 | Msa0985290:intron | 40.0% |
| GACTTGTACTTGTAAACTGG+TGG | - | chr6_4:31623411-31623430 | Msa0985290:three_prime_UTR | 40.0% | |
| TTGTACTTGTAAACTGGTGG+TGG | - | chr6_4:31623567-31623586 | Msa0985290:three_prime_UTR | 40.0% | |
| GACTTGTACTTGTAAACTGG+TGG | - | chr6_4:31623411-31623430 | Msa0985290:three_prime_UTR | 40.0% | |
| TTGTACTTGTAAACTGGTGG+AGG | - | chr6_4:31623567-31623586 | Msa0985290:three_prime_UTR | 40.0% | |
| GACTTGTACTTGTAAACTGG+TGG | - | chr6_4:31623411-31623430 | Msa0985290:three_prime_UTR | 40.0% | |
| TTGTACTTGTAAACTGGTGG+TGG | - | chr6_4:31623567-31623586 | Msa0985290:three_prime_UTR | 40.0% | |
| TACTTGTAAACTGGTGGAGG+TGG | - | chr6_4:31623366-31623385 | Msa0985290:three_prime_UTR | 45.0% | |
| TTGTACTTGTAAACTGGGGG+AGG | - | chr6_4:31623414-31623433 | Msa0985290:three_prime_UTR | 45.0% | |
| TTGTACTTGTAAACTGGGGG+AGG | - | chr6_4:31623414-31623433 | Msa0985290:three_prime_UTR | 45.0% | |
| GGGGACTTGTACTTGTAAAC+TGG | - | chr6_4:31623561-31623580 | Msa0985290:three_prime_UTR | 45.0% | |
| !! | TACTTGTAAACTGGTGGTGG+TGG | - | chr6_4:31623570-31623589 | Msa0985290:three_prime_UTR | 45.0% |
| GGGGACTTGTACTTGTAAAC+TGG | - | chr6_4:31623561-31623580 | Msa0985290:three_prime_UTR | 45.0% | |
| TACTTGTAAACTGGTGGAGG+TGG | - | chr6_4:31623366-31623385 | Msa0985290:three_prime_UTR | 45.0% | |
| GGGGACTTGTACTTGTAAAC+TGG | - | chr6_4:31623561-31623580 | Msa0985290:three_prime_UTR | 45.0% | |
| !! | TACTTGTAAACTGGTGGTGG+TGG | - | chr6_4:31623570-31623589 | Msa0985290:three_prime_UTR | 45.0% |
| TAGTAGTGGTAAGGAGGAGG+TGG | - | chr6_4:31623285-31623304 | Msa0985290:three_prime_UTR | 50.0% | |
| TACTTGTAAACTGGGGGAGG+TGG | - | chr6_4:31623417-31623436 | Msa0985290:three_prime_UTR | 50.0% | |
| TACTTGTAAACTGGGGGAGG+TGG | - | chr6_4:31623417-31623436 | Msa0985290:three_prime_UTR | 50.0% | |
| GGTGGAGGTGGTGAATAGAC+AGG | - | chr6_4:31623378-31623397 | Msa0985290:three_prime_UTR | 55.0% | |
| GGAGGTGGTGAATAGACAGG+AGG | - | chr6_4:31623381-31623400 | Msa0985290:three_prime_UTR | 55.0% | |
| GGTGGTGAATAGACAGGAGG+AGG | - | chr6_4:31623384-31623403 | Msa0985290:three_prime_UTR | 55.0% | |
| GGTGAATAGACAGGAGGAGG+TGG | - | chr6_4:31623387-31623406 | Msa0985290:three_prime_UTR | 55.0% | |
| TGGTGGAGGTGGTGAGTAGA+CGG | - | chr6_4:31623530-31623549 | Msa0985290:intron | 55.0% | |
| !! | TGGTGGTGGTGGTGAGTAGA+CGG | - | chr6_4:31623581-31623600 | Msa0985290:three_prime_UTR | 55.0% |
| TGGTGGAGGTGGTGAGTAGA+CGG | - | chr6_4:31623530-31623549 | Msa0985290:intron | 55.0% | |
| !! | TGGTGGTGGTGGTGAGTAGA+CGG | - | chr6_4:31623581-31623600 | Msa0985290:three_prime_UTR | 55.0% |
| GGTGGAGGTGGTGAGTAAGC+AGG | - | chr6_4:31623327-31623346 | Msa0985290:three_prime_UTR | 60.0% | |
| GGAGGTGGTGAGTAAGCAGG+AGG | - | chr6_4:31623330-31623349 | Msa0985290:three_prime_UTR | 60.0% | |
| GGTGGTGAGTAAGCAGGAGG+AGG | - | chr6_4:31623333-31623352 | Msa0985290:three_prime_UTR | 60.0% | |
| GGTGAGTAAGCAGGAGGAGG+AGG | - | chr6_4:31623336-31623355 | Msa0985290:three_prime_UTR | 60.0% | |
| TGGGGGAGGTGGTGAGTAGA+CGG | - | chr6_4:31623428-31623447 | Msa0985290:three_prime_UTR | 60.0% | |
| GGAGGTGGTGAGTAGACAGG+TGG | - | chr6_4:31623483-31623502 | Msa0985290:intron | 60.0% | |
| GGTGGTGAGTAGACAGGTGG+AGG | - | chr6_4:31623486-31623505 | Msa0985290:intron | 60.0% | |
| GGTGAGTAGACAGGTGGAGG+AGG | - | chr6_4:31623489-31623508 | Msa0985290:intron | 60.0% | |
| GGTGGAGGTGGTGAGTAGAC+GGG | - | chr6_4:31623531-31623550 | Msa0985290:intron | 60.0% | |
| GTGAGTAGACGGGTGGAGGT+GGG | - | chr6_4:31623541-31623560 | Msa0985290:intron | 60.0% | |
| TGAGTAGACGGGTGGAGGTG+GGG | - | chr6_4:31623542-31623561 | Msa0985290:three_prime_UTR | 60.0% | |
| !! | GGTGGTGGTGGTGAGTAGAC+GGG | - | chr6_4:31623582-31623601 | Msa0985290:three_prime_UTR | 60.0% |
| GTGAGTAGACGGGTGGAGGT+GGG | - | chr6_4:31623541-31623560 | Msa0985290:intron | 60.0% | |
| TGAGTAGACGGGTGGAGGTG+GGG | - | chr6_4:31623542-31623561 | Msa0985290:three_prime_UTR | 60.0% | |
| GGTGGAGGTGGTGAGTAGAC+GGG | - | chr6_4:31623531-31623550 | Msa0985290:intron | 60.0% | |
| GTGAGTAGACGGGTGGAGGA+GGG | - | chr6_4:31623643-31623662 | Msa0985290:exon | 60.0% | |
| TGAGTAGACGGGTGGAGGAG+GGG | - | chr6_4:31623644-31623663 | Msa0985290:exon | 60.0% | |
| !! | GGTGGTGGTGGTGAGTAGAC+GGG | - | chr6_4:31623582-31623601 | Msa0985290:three_prime_UTR | 60.0% |
| GTGAGTAGACGGGTGGAGGT+GGG | - | chr6_4:31623541-31623560 | Msa0985290:intron | 60.0% | |
| TGAGTAGACGGGTGGAGGTG+GGG | - | chr6_4:31623542-31623561 | Msa0985290:three_prime_UTR | 60.0% | |
| GGGGGAGGTGGTGAGTAGAC+GGG | - | chr6_4:31623429-31623448 | Msa0985290:three_prime_UTR | 65.0% | |
| GGAGGTGGTGAGTAGACGGG+AGG | - | chr6_4:31623432-31623451 | Msa0985290:three_prime_UTR | 65.0% | |
| GGTGGTGAGTAGACGGGAGG+AGG | - | chr6_4:31623435-31623454 | Msa0985290:three_prime_UTR | 65.0% | |
| GGTGAGTAGACGGGAGGAGG+TGG | - | chr6_4:31623438-31623457 | Msa0985290:three_prime_UTR | 65.0% | |
| GGGGGAGGTGGTGAGTAGAC+AGG | - | chr6_4:31623429-31623448 | Msa0985290:three_prime_UTR | 65.0% | |
| GGAGGTGGTGAGTAGACGGG+TGG | - | chr6_4:31623432-31623451 | Msa0985290:three_prime_UTR | 65.0% | |
| GGTGGTGAGTAGACGGGTGG+AGG | - | chr6_4:31623537-31623556 | Msa0985290:intron | 65.0% | |
| GGTGAGTAGACGGGTGGAGG+TGG | - | chr6_4:31623540-31623559 | Msa0985290:intron | 65.0% | |
| ! | GGTGGTGGTGAGTAGACGGG+TGG | - | chr6_4:31623585-31623604 | Msa0985290:three_prime_UTR | 65.0% |
| GGTGGTGAGTAGACGGGTGG+AGG | - | chr6_4:31623537-31623556 | Msa0985290:intron | 65.0% | |
| GGTGAGTAGACGGGTGGAGG+TGG | - | chr6_4:31623540-31623559 | Msa0985290:intron | 65.0% | |
| GGAGGTGGTGAGTAGACGGG+TGG | - | chr6_4:31623432-31623451 | Msa0985290:three_prime_UTR | 65.0% | |
| GGTGGTGAGTAGACGGGTGG+AGG | - | chr6_4:31623537-31623556 | Msa0985290:intron | 65.0% | |
| GGTGAGTAGACGGGTGGAGG+AGG | - | chr6_4:31623540-31623559 | Msa0985290:intron | 65.0% | |
| ! | GGTGGTGGTGAGTAGACGGG+TGG | - | chr6_4:31623585-31623604 | Msa0985290:three_prime_UTR | 65.0% |
| GGTGGTGAGTAGACGGGTGG+AGG | - | chr6_4:31623537-31623556 | Msa0985290:intron | 65.0% | |
| GGTGAGTAGACGGGTGGAGG+TGG | - | chr6_4:31623540-31623559 | Msa0985290:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 31623246 | 31623734 | 31623246 | ID=Msa0985290;Name=Msa0985290 |
| chr6_4 | mRNA | 31623246 | 31623734 | 31623246 | ID=Msa0985290-mRNA-1;Parent=Msa0985290;Name=Msa0985290-mRNA-1;_AED=0.28;_eAED=0.52;_QI=77|0|0|1|0|0|2|331|5 |
| chr6_4 | exon | 31623542 | 31623734 | 31623542 | ID=Msa0985290-mRNA-1:exon:8454;Parent=Msa0985290-mRNA-1 |
| chr6_4 | exon | 31623246 | 31623478 | 31623246 | ID=Msa0985290-mRNA-1:exon:8453;Parent=Msa0985290-mRNA-1 |
| chr6_4 | five_prime_UTR | 31623658 | 31623734 | 31623658 | ID=Msa0985290-mRNA-1:five_prime_utr;Parent=Msa0985290-mRNA-1 |
| chr6_4 | CDS | 31623640 | 31623657 | 31623640 | ID=Msa0985290-mRNA-1:cds;Parent=Msa0985290-mRNA-1 |
| chr6_4 | three_prime_UTR | 31623542 | 31623639 | 31623542 | ID=Msa0985290-mRNA-1:three_prime_utr;Parent=Msa0985290-mRNA-1 |
| chr6_4 | three_prime_UTR | 31623246 | 31623478 | 31623246 | ID=Msa0985290-mRNA-1:three_prime_utr;Parent=Msa0985290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
