Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427740 | AES72921.1 | 97.723 | 483 | 10 | 1 | 1 | 482 | 1 | 483 | 0.0 | 964 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427740 | sp|Q38967|AAP2_ARATH | 65.639 | 454 | 152 | 2 | 29 | 478 | 36 | 489 | 0.0 | 644 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427740 | G7JC72 | 97.723 | 483 | 10 | 1 | 1 | 482 | 1 | 483 | 0.0 | 964 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0427740 | 0.818248 | 2.163814e-52 | -8.615850e-47 |
| Msa0019570 | Msa0427740 | 0.851340 | 9.459517e-61 | -8.615850e-47 |
| Msa0028410 | Msa0427740 | -0.803246 | 3.819576e-49 | -8.615850e-47 |
| Msa0028450 | Msa0427740 | -0.802040 | 6.775212e-49 | -8.615850e-47 |
| Msa0036580 | Msa0427740 | 0.814000 | 1.925350e-51 | -8.615850e-47 |
| Msa0039270 | Msa0427740 | 0.804289 | 2.319997e-49 | -8.615850e-47 |
| Msa0039610 | Msa0427740 | 0.813481 | 2.504812e-51 | -8.615850e-47 |
| Msa0043240 | Msa0427740 | 0.832288 | 1.029591e-55 | -8.615850e-47 |
| Msa0043840 | Msa0427740 | 0.833210 | 6.078125e-56 | -8.615850e-47 |
| Msa0046390 | Msa0427740 | 0.801143 | 1.034953e-48 | -8.615850e-47 |
| Msa0057530 | Msa0427740 | -0.801263 | 9.779635e-49 | -8.615850e-47 |
| Msa0059880 | Msa0427740 | 0.838669 | 2.506848e-57 | -8.615850e-47 |
| Msa0059960 | Msa0427740 | 0.813837 | 2.090862e-51 | -8.615850e-47 |
| Msa0061600 | Msa0427740 | 0.800443 | 1.437948e-48 | -8.615850e-47 |
| Msa0090500 | Msa0427740 | 0.821379 | 4.166329e-53 | -8.615850e-47 |
| Msa0116480 | Msa0427740 | 0.811060 | 8.455702e-51 | -8.615850e-47 |
| Msa0124070 | Msa0427740 | -0.814204 | 1.735729e-51 | -8.615850e-47 |
| Msa0130710 | Msa0427740 | 0.800577 | 1.350359e-48 | -8.615850e-47 |
| Msa0132590 | Msa0427740 | 0.809728 | 1.639696e-50 | -8.615850e-47 |
| Msa0137970 | Msa0427740 | 0.837844 | 4.089637e-57 | -8.615850e-47 |
| Msa0139270 | Msa0427740 | 0.821776 | 3.373779e-53 | -8.615850e-47 |
| Msa0150910 | Msa0427740 | 0.838035 | 3.652871e-57 | -8.615850e-47 |
| Msa0176620 | Msa0427740 | 0.823779 | 1.152400e-53 | -8.615850e-47 |
| Msa0182310 | Msa0427740 | 0.820432 | 6.882017e-53 | -8.615850e-47 |
| Msa0183920 | Msa0427740 | 0.815481 | 9.042673e-52 | -8.615850e-47 |
| Msa0199860 | Msa0427740 | 0.816545 | 5.232793e-52 | -8.615850e-47 |
| Msa0202150 | Msa0427740 | -0.811404 | 7.120634e-51 | -8.615850e-47 |
| Msa0212550 | Msa0427740 | 0.801914 | 7.191322e-49 | -8.615850e-47 |
| Msa0224400 | Msa0427740 | -0.801079 | 1.066446e-48 | -8.615850e-47 |
| Msa0225910 | Msa0427740 | 0.811390 | 7.171244e-51 | -8.615850e-47 |
| Msa0234120 | Msa0427740 | 0.810152 | 1.328477e-50 | -8.615850e-47 |
| Msa0369660 | Msa0427740 | 0.807469 | 4.977827e-50 | -8.615850e-47 |
| Msa0373220 | Msa0427740 | -0.815951 | 7.104711e-52 | -8.615850e-47 |
| Msa0378390 | Msa0427740 | 0.990268 | 7.773794e-182 | -8.615850e-47 |
| Msa0380520 | Msa0427740 | -0.807755 | 4.329673e-50 | -8.615850e-47 |
| Msa0386390 | Msa0427740 | -0.815671 | 8.204354e-52 | -8.615850e-47 |
| Msa0388200 | Msa0427740 | -0.814879 | 1.230566e-51 | -8.615850e-47 |
| Msa0396790 | Msa0427740 | 0.804166 | 2.461613e-49 | -8.615850e-47 |
| Msa0398690 | Msa0427740 | 0.811019 | 8.629370e-51 | -8.615850e-47 |
| Msa0424240 | Msa0427740 | 0.827792 | 1.286419e-54 | -8.615850e-47 |
| Msa0427740 | Msa0427970 | 0.995975 | 5.771501e-222 | -8.615850e-47 |
| Msa0427740 | Msa0430020 | -0.807911 | 4.009794e-50 | -8.615850e-47 |
| Msa0427740 | Msa0432390 | -0.803391 | 3.564672e-49 | -8.615850e-47 |
| Msa0427740 | Msa0433670 | -0.835703 | 1.438310e-56 | -8.615850e-47 |
| Msa0427740 | Msa0444400 | 0.809042 | 2.300259e-50 | -8.615850e-47 |
| Msa0427740 | Msa0446480 | -0.802340 | 5.877411e-49 | -8.615850e-47 |
| Msa0427740 | Msa0458790 | -0.803170 | 3.960322e-49 | -8.615850e-47 |
| Msa0427740 | Msa0463890 | 0.814807 | 1.276495e-51 | -8.615850e-47 |
| Msa0427740 | Msa0464310 | 0.807896 | 4.040556e-50 | -8.615850e-47 |
| Msa0427740 | Msa0468020 | -0.809757 | 1.616053e-50 | -8.615850e-47 |
| Msa0427740 | Msa0477550 | -0.803152 | 3.995434e-49 | -8.615850e-47 |
| Msa0427740 | Msa0478400 | 0.828903 | 6.940782e-55 | -8.615850e-47 |
| Msa0427740 | Msa0479790 | -0.816633 | 5.001789e-52 | -8.615850e-47 |
| Msa0427740 | Msa0491950 | 0.805647 | 1.206921e-49 | -8.615850e-47 |
| Msa0427740 | Msa0503120 | -0.802497 | 5.455202e-49 | -8.615850e-47 |
| Msa0427740 | Msa0518570 | 0.999345 | 1.079966e-304 | -8.615850e-47 |
| Msa0427740 | Msa0521570 | -0.816978 | 4.184049e-52 | -8.615850e-47 |
| Msa0427740 | Msa0528170 | -0.804329 | 2.276256e-49 | -8.615850e-47 |
| Msa0427740 | Msa0535570 | 0.801696 | 7.971379e-49 | -8.615850e-47 |
| Msa0427740 | Msa0538440 | 0.816946 | 4.253580e-52 | -8.615850e-47 |
| Msa0427740 | Msa0538450 | 0.800739 | 1.251236e-48 | -8.615850e-47 |
| Msa0427740 | Msa0538520 | 0.802410 | 5.684988e-49 | -8.615850e-47 |
| Msa0427740 | Msa0538530 | 0.805017 | 1.635109e-49 | -8.615850e-47 |
| Msa0427740 | Msa0548760 | 0.804617 | 1.981953e-49 | -8.615850e-47 |
| Msa0427740 | Msa0589730 | 0.802976 | 4.344464e-49 | -8.615850e-47 |
| Msa0427740 | Msa0594320 | 0.805867 | 1.085156e-49 | -8.615850e-47 |
| Msa0427740 | Msa0598610 | -0.814085 | 1.843246e-51 | -8.615850e-47 |
| Msa0427740 | Msa0620670 | 0.802290 | 6.016727e-49 | -8.615850e-47 |
| Msa0427740 | Msa0621870 | -0.861364 | 1.080641e-63 | -8.615850e-47 |
| Msa0427740 | Msa0634290 | 0.814384 | 1.583484e-51 | -8.615850e-47 |
| Msa0427740 | Msa0645120 | 0.803079 | 4.137022e-49 | -8.615850e-47 |
| Msa0427740 | Msa0668220 | 0.802521 | 5.393578e-49 | -8.615850e-47 |
| Msa0427740 | Msa0669710 | -0.802097 | 6.595094e-49 | -8.615850e-47 |
| Msa0427740 | Msa0669750 | -0.801189 | 1.012397e-48 | -8.615850e-47 |
| Msa0427740 | Msa0670360 | 0.801988 | 6.944378e-49 | -8.615850e-47 |
| Msa0427740 | Msa0684590 | 0.804790 | 1.824465e-49 | -8.615850e-47 |
| Msa0427740 | Msa0684600 | 0.807954 | 3.927633e-50 | -8.615850e-47 |
| Msa0427740 | Msa0688760 | -0.801191 | 1.011438e-48 | -8.615850e-47 |
| Msa0427740 | Msa0715260 | 0.804960 | 1.680955e-49 | -8.615850e-47 |
| Msa0427740 | Msa0716600 | 0.828860 | 7.108439e-55 | -8.615850e-47 |
| Msa0427740 | Msa0717270 | -0.814311 | 1.643744e-51 | -8.615850e-47 |
| Msa0427740 | Msa0720660 | 0.809154 | 2.176490e-50 | -8.615850e-47 |
| Msa0427740 | Msa0732530 | -0.806348 | 8.592982e-50 | -8.615850e-47 |
| Msa0427740 | Msa0735340 | 0.813890 | 2.035205e-51 | -8.615850e-47 |
| Msa0427740 | Msa0747500 | 0.813696 | 2.245740e-51 | -8.615850e-47 |
| Msa0427740 | Msa0747900 | -0.810380 | 1.186400e-50 | -8.615850e-47 |
| Msa0427740 | Msa0752290 | -0.832710 | 8.091281e-56 | -8.615850e-47 |
| Msa0427740 | Msa0757240 | 0.802546 | 5.329649e-49 | -8.615850e-47 |
| Msa0427740 | Msa0757990 | 0.801355 | 9.364853e-49 | -8.615850e-47 |
| Msa0427740 | Msa0758150 | 0.803662 | 3.132117e-49 | -8.615850e-47 |
| Msa0427740 | Msa0759610 | 0.812590 | 3.926695e-51 | -8.615850e-47 |
| Msa0427740 | Msa0761250 | 0.833973 | 3.919280e-56 | -8.615850e-47 |
| Msa0427740 | Msa0766030 | -0.818601 | 1.800027e-52 | -8.615850e-47 |
| Msa0427740 | Msa0777070 | 0.807119 | 5.906772e-50 | -8.615850e-47 |
| Msa0427740 | Msa0787860 | 0.809696 | 1.665649e-50 | -8.615850e-47 |
| Msa0427740 | Msa0798230 | 0.802752 | 4.832796e-49 | -8.615850e-47 |
| Msa0427740 | Msa0799710 | -0.828376 | 9.303524e-55 | -8.615850e-47 |
| Msa0427740 | Msa0803560 | 0.860048 | 2.709879e-63 | -8.615850e-47 |
| Msa0427740 | Msa0814160 | 0.816200 | 6.251891e-52 | -8.615850e-47 |
| Msa0427740 | Msa0817100 | 0.807836 | 4.160154e-50 | -8.615850e-47 |
| Msa0427740 | Msa0825520 | -0.810778 | 9.732703e-51 | -8.615850e-47 |
| Msa0427740 | Msa0833230 | 0.808725 | 2.688907e-50 | -8.615850e-47 |
| Msa0427740 | Msa0836740 | 0.807541 | 4.806062e-50 | -8.615850e-47 |
| Msa0427740 | Msa0837990 | -0.801888 | 7.280931e-49 | -8.615850e-47 |
| Msa0427740 | Msa0854840 | 0.814497 | 1.495203e-51 | -8.615850e-47 |
| Msa0427740 | Msa0864160 | 0.800984 | 1.114980e-48 | -8.615850e-47 |
| Msa0427740 | Msa0864730 | -0.816289 | 5.970238e-52 | -8.615850e-47 |
| Msa0427740 | Msa0864750 | -0.817569 | 3.081050e-52 | -8.615850e-47 |
| Msa0427740 | Msa0880060 | -0.837693 | 4.472563e-57 | -8.615850e-47 |
| Msa0427740 | Msa0882430 | 0.855251 | 7.153183e-62 | -8.615850e-47 |
| Msa0427740 | Msa0886370 | 0.811470 | 6.891461e-51 | -8.615850e-47 |
| Msa0427740 | Msa0896920 | 0.800425 | 1.449881e-48 | -8.615850e-47 |
| Msa0427740 | Msa0896990 | 0.813881 | 2.044456e-51 | -8.615850e-47 |
| Msa0427740 | Msa0910590 | 0.809469 | 1.863016e-50 | -8.615850e-47 |
| Msa0427740 | Msa0913500 | 0.821345 | 4.242622e-53 | -8.615850e-47 |
| Msa0427740 | Msa0944690 | -0.802578 | 5.248954e-49 | -8.615850e-47 |
| Msa0427740 | Msa0951060 | 0.834150 | 3.539285e-56 | -8.615850e-47 |
| Msa0427740 | Msa0962260 | 0.802660 | 5.047763e-49 | -8.615850e-47 |
| Msa0427740 | Msa0973890 | -0.805068 | 1.595941e-49 | -8.615850e-47 |
| Msa0427740 | Msa0985250 | 0.814966 | 1.177148e-51 | -8.615850e-47 |
| Msa0427740 | Msa0985260 | 0.827778 | 1.296188e-54 | -8.615850e-47 |
| Msa0427740 | Msa0987550 | 0.800312 | 1.529119e-48 | -8.615850e-47 |
| Msa0427740 | Msa0996940 | 0.805800 | 1.120478e-49 | -8.615850e-47 |
| Msa0427740 | Msa1014530 | -0.844130 | 9.148670e-59 | -8.615850e-47 |
| Msa0427740 | Msa1024140 | -0.816951 | 4.242392e-52 | -8.615850e-47 |
| Msa0427740 | Msa1024350 | 0.804917 | 1.715709e-49 | -8.615850e-47 |
| Msa0427740 | Msa1024420 | 0.800088 | 1.698013e-48 | -8.615850e-47 |
| Msa0427740 | Msa1026880 | -0.805561 | 1.257742e-49 | -8.615850e-47 |
| Msa0427740 | Msa1030430 | -0.803670 | 3.121086e-49 | -8.615850e-47 |
| Msa0427740 | Msa1036350 | -0.809350 | 1.976332e-50 | -8.615850e-47 |
| Msa0427740 | Msa1037060 | 0.888320 | 6.553692e-73 | -8.615850e-47 |
| Msa0427740 | Msa1046220 | 0.804706 | 1.898817e-49 | -8.615850e-47 |
| Msa0427740 | Msa1055490 | -0.812548 | 4.011016e-51 | -8.615850e-47 |
| Msa0427740 | Msa1064210 | -0.810356 | 1.200592e-50 | -8.615850e-47 |
| Msa0427740 | Msa1067910 | -0.821228 | 4.514912e-53 | -8.615850e-47 |
| Msa0427740 | Msa1077940 | 0.887125 | 1.877259e-72 | -8.615850e-47 |
| Msa0427740 | Msa1085370 | -0.803802 | 2.929899e-49 | -8.615850e-47 |
| Msa0427740 | Msa1087380 | 0.805592 | 1.238937e-49 | -8.615850e-47 |
| Msa0427740 | Msa1096280 | -0.833899 | 4.089684e-56 | -8.615850e-47 |
| Msa0427740 | Msa1115830 | -0.800595 | 1.338701e-48 | -8.615850e-47 |
| Msa0427740 | Msa1124880 | 0.802151 | 6.428808e-49 | -8.615850e-47 |
| Msa0427740 | Msa1127940 | 0.802803 | 4.717069e-49 | -8.615850e-47 |
| Msa0427740 | Msa1129540 | 0.833267 | 5.882790e-56 | -8.615850e-47 |
| Msa0427740 | Msa1130070 | -0.808696 | 2.728345e-50 | -8.615850e-47 |
| Msa0427740 | Msa1138110 | 0.800166 | 1.637252e-48 | -8.615850e-47 |
| Msa0427740 | Msa1162330 | -0.802369 | 5.797336e-49 | -8.615850e-47 |
| Msa0427740 | Msa1164800 | 0.877352 | 6.734877e-69 | -8.615850e-47 |
| Msa0427740 | Msa1165860 | 0.808086 | 3.680245e-50 | -8.615850e-47 |
| Msa0427740 | Msa1173290 | 0.806989 | 6.291794e-50 | -8.615850e-47 |
| Msa0427740 | Msa1177960 | -0.814840 | 1.255309e-51 | -8.615850e-47 |
| Msa0427740 | Msa1184010 | -0.811846 | 5.708168e-51 | -8.615850e-47 |
| Msa0427740 | Msa1209650 | -0.815574 | 8.622409e-52 | -8.615850e-47 |
| Msa0427740 | Msa1219780 | 0.873648 | 1.249900e-67 | -8.615850e-47 |
| Msa0427740 | Msa1221570 | 0.813726 | 2.211759e-51 | -8.615850e-47 |
| Msa0427740 | Msa1222030 | 0.862291 | 5.623400e-64 | -8.615850e-47 |
| Msa0427740 | Msa1226880 | -0.802371 | 5.789925e-49 | -8.615850e-47 |
| Msa0427740 | Msa1228350 | -0.801072 | 1.069738e-48 | -8.615850e-47 |
| Msa0427740 | Msa1262320 | 0.807624 | 4.616241e-50 | -8.615850e-47 |
| Msa0427740 | Msa1265990 | -0.862862 | 3.752880e-64 | -8.615850e-47 |
| Msa0427740 | Msa1266710 | 0.857310 | 1.781044e-62 | -8.615850e-47 |
| Msa0427740 | Msa1298740 | -0.821763 | 3.397161e-53 | -8.615850e-47 |
| Msa0427740 | Msa1318180 | -0.803267 | 3.781907e-49 | -8.615850e-47 |
| Msa0427740 | Msa1323150 | 0.805875 | 1.080703e-49 | -8.615850e-47 |
| Msa0427740 | Msa1323160 | 0.809219 | 2.107905e-50 | -8.615850e-47 |
| Msa0427740 | Msa1341030 | 0.805622 | 1.221085e-49 | -8.615850e-47 |
| Msa0427740 | Msa1349810 | -0.807706 | 4.433376e-50 | -8.615850e-47 |
| Msa0427740 | Msa1351370 | -0.809802 | 1.580414e-50 | -8.615850e-47 |
| Msa0427740 | Msa1361090 | -0.816879 | 4.403245e-52 | -8.615850e-47 |
| Msa0427740 | Msa1373910 | -0.825242 | 5.216240e-54 | -8.615850e-47 |
| Msa0427740 | Msa1378950 | 0.807235 | 5.580151e-50 | -8.615850e-47 |
| Msa0427740 | Msa1379250 | 0.832356 | 9.904356e-56 | -8.615850e-47 |
| Msa0427740 | Msa1384620 | -0.809006 | 2.341994e-50 | -8.615850e-47 |
| Msa0427740 | Msa1387520 | -0.813602 | 2.356037e-51 | -8.615850e-47 |
| Msa0427740 | Msa1395580 | -0.814108 | 1.822271e-51 | -8.615850e-47 |
| Msa0427740 | Msa1395690 | 0.821282 | 4.386931e-53 | -8.615850e-47 |
| Msa0427740 | Msa1396550 | 0.802498 | 5.451943e-49 | -8.615850e-47 |
| Msa0427740 | Msa1400700 | 0.906897 | 9.073680e-81 | -8.615850e-47 |
| Msa0427740 | Msa1405380 | -0.800452 | 1.431590e-48 | -8.615850e-47 |
| Msa0427740 | Msa1407210 | 0.868515 | 6.165188e-66 | -8.615850e-47 |
| Msa0427740 | Msa1418190 | 0.810361 | 1.197551e-50 | -8.615850e-47 |
| Msa0427740 | Msa1423660 | 0.832152 | 1.112547e-55 | -8.615850e-47 |
| Msa0427740 | Msa1428990 | -0.825023 | 5.874239e-54 | -8.615850e-47 |
| Msa0427740 | Msa1432350 | -0.800114 | 1.677230e-48 | -8.615850e-47 |
| Msa0427740 | Msa1439070 | -0.823055 | 1.702129e-53 | -8.615850e-47 |
| Msa0427740 | Msa1445780 | 0.814286 | 1.664944e-51 | -8.615850e-47 |
| Msa0427740 | Msa1450130 | 0.816486 | 5.395425e-52 | -8.615850e-47 |
| Msa0427740 | Msa1451780 | -0.814355 | 1.607129e-51 | -8.615850e-47 |
| Msa0427740 | Msa1453650 | 0.802321 | 5.930351e-49 | -8.615850e-47 |
| Msa0427740 | Msa1462600 | -0.829969 | 3.821782e-55 | -8.615850e-47 |
| Msa0257930 | Msa0427740 | 0.807114 | 5.919847e-50 | -8.615850e-47 |
| Msa0258700 | Msa0427740 | 0.801177 | 1.018235e-48 | -8.615850e-47 |
| Msa0264220 | Msa0427740 | 0.817492 | 3.206352e-52 | -8.615850e-47 |
| Msa0274260 | Msa0427740 | 0.804174 | 2.451499e-49 | -8.615850e-47 |
| Msa0291880 | Msa0427740 | 0.806894 | 6.590050e-50 | -8.615850e-47 |
| Msa0295520 | Msa0427740 | -0.804315 | 2.291274e-49 | -8.615850e-47 |
| Msa0296930 | Msa0427740 | 0.800613 | 1.327667e-48 | -8.615850e-47 |
| Msa0297950 | Msa0427740 | 0.865977 | 3.990137e-65 | -8.615850e-47 |
| Msa0302220 | Msa0427740 | 0.825725 | 4.007614e-54 | -8.615850e-47 |
| Msa0303440 | Msa0427740 | -0.810857 | 9.355436e-51 | -8.615850e-47 |
| Msa0303500 | Msa0427740 | -0.805734 | 1.157106e-49 | -8.615850e-47 |
| Msa0314980 | Msa0427740 | -0.805865 | 1.086130e-49 | -8.615850e-47 |
| Msa0318370 | Msa0427740 | 0.838546 | 2.696420e-57 | -8.615850e-47 |
| Msa0320540 | Msa0427740 | -0.817285 | 3.569441e-52 | -8.615850e-47 |
| Msa0335890 | Msa0427740 | 0.851364 | 9.313339e-61 | -8.615850e-47 |
| Msa0336640 | Msa0427740 | 0.816969 | 4.203669e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427740 | MtrunA17_Chr8g0384661 | 68.736 | 451 | 141 | 0 | 31 | 481 | 43 | 493 | 0.0 | 667 |
| Msa0427740 | MtrunA17_Chr3g0130651 | 70.130 | 462 | 136 | 1 | 19 | 480 | 7 | 466 | 0.0 | 658 |
| Msa0427740 | MtrunA17_Chr3g0130641 | 66.180 | 479 | 157 | 2 | 1 | 479 | 1 | 474 | 0.0 | 658 |
| Msa0427740 | MtrunA17_Chr3g0125091 | 61.284 | 483 | 177 | 5 | 1 | 479 | 1 | 477 | 0.0 | 612 |
| Msa0427740 | MtrunA17_Chr3g0125081 | 60.707 | 481 | 180 | 4 | 1 | 478 | 1 | 475 | 0.0 | 611 |
| Msa0427740 | MtrunA17_Chr4g0037201 | 61.339 | 463 | 170 | 2 | 28 | 481 | 49 | 511 | 0.0 | 606 |
| Msa0427740 | MtrunA17_Chr3g0125101 | 59.627 | 483 | 185 | 5 | 1 | 479 | 1 | 477 | 0.0 | 593 |
| Msa0427740 | MtrunA17_Chr1g0159761 | 63.516 | 455 | 162 | 2 | 28 | 478 | 17 | 471 | 0.0 | 592 |
| Msa0427740 | MtrunA17_Chr3g0140761 | 54.430 | 474 | 210 | 4 | 11 | 478 | 5 | 478 | 0.0 | 521 |
| Msa0427740 | MtrunA17_Chr1g0146491 | 53.829 | 457 | 206 | 3 | 27 | 478 | 12 | 468 | 0.0 | 514 |
| Msa0427740 | MtrunA17_Chr3g0130671 | 96.761 | 247 | 7 | 1 | 1 | 246 | 1 | 247 | 7.68e-175 | 492 |
| Msa0427740 | MtrunA17_Chr1g0206871 | 51.868 | 455 | 205 | 4 | 37 | 478 | 14 | 467 | 3.19e-167 | 480 |
| Msa0427740 | MtrunA17_Chr3g0103231 | 51.020 | 441 | 211 | 2 | 31 | 468 | 16 | 454 | 7.91e-165 | 473 |
| Msa0427740 | MtrunA17_Chr3g0103211 | 50.113 | 441 | 215 | 2 | 31 | 468 | 16 | 454 | 1.04e-158 | 458 |
| Msa0427740 | MtrunA17_Chr3g0103221 | 51.030 | 437 | 209 | 3 | 35 | 468 | 27 | 461 | 3.65e-158 | 457 |
| Msa0427740 | MtrunA17_Chr5g0447221 | 50.229 | 436 | 210 | 4 | 37 | 468 | 28 | 460 | 7.58e-157 | 453 |
| Msa0427740 | MtrunA17_Chr3g0103271 | 49.115 | 452 | 220 | 4 | 20 | 467 | 9 | 454 | 1.34e-150 | 437 |
| Msa0427740 | MtrunA17_Chr3g0140531 | 47.046 | 457 | 237 | 3 | 26 | 478 | 12 | 467 | 2.09e-149 | 434 |
| Msa0427740 | MtrunA17_Chr1g0146411 | 46.930 | 456 | 232 | 4 | 26 | 478 | 21 | 469 | 1.47e-148 | 432 |
| Msa0427740 | MtrunA17_Chr1g0146331 | 46.137 | 453 | 236 | 5 | 32 | 479 | 14 | 463 | 6.42e-147 | 428 |
| Msa0427740 | MtrunA17_Chr1g0146391 | 46.018 | 452 | 237 | 4 | 32 | 479 | 6 | 454 | 6.00e-146 | 425 |
| Msa0427740 | MtrunA17_Chr2g0293331 | 46.358 | 453 | 236 | 4 | 31 | 479 | 5 | 454 | 4.20e-145 | 423 |
| Msa0427740 | MtrunA17_Chr3g0140541 | 47.323 | 467 | 240 | 4 | 15 | 478 | 3 | 466 | 1.97e-142 | 417 |
| Msa0427740 | MtrunA17_Chr5g0447231 | 43.349 | 436 | 241 | 3 | 37 | 468 | 24 | 457 | 7.45e-134 | 394 |
| Msa0427740 | MtrunA17_Chr3g0130661 | 99.448 | 181 | 1 | 0 | 302 | 482 | 1 | 181 | 1.64e-127 | 368 |
| Msa0427740 | MtrunA17_Chr1g0206851 | 48.361 | 366 | 178 | 4 | 119 | 479 | 19 | 378 | 1.05e-125 | 371 |
| Msa0427740 | MtrunA17_Chr5g0402151 | 60.000 | 295 | 85 | 3 | 41 | 335 | 3 | 264 | 9.48e-114 | 336 |
| Msa0427740 | MtrunA17_Chr1g0206831 | 50.298 | 336 | 156 | 4 | 143 | 473 | 6 | 335 | 7.35e-113 | 337 |
| Msa0427740 | MtrunA17_Chr3g0103251 | 48.424 | 349 | 146 | 3 | 152 | 468 | 21 | 367 | 9.80e-113 | 337 |
| Msa0427740 | MtrunA17_Chr1g0206821 | 53.785 | 251 | 113 | 3 | 20 | 268 | 5 | 254 | 9.54e-83 | 265 |
| Msa0427740 | MtrunA17_Chr1g0206821 | 52.232 | 224 | 104 | 1 | 261 | 481 | 307 | 530 | 2.32e-78 | 254 |
| Msa0427740 | MtrunA17_Chr6g0458931 | 28.889 | 450 | 276 | 11 | 38 | 479 | 42 | 455 | 1.14e-43 | 160 |
| Msa0427740 | MtrunA17_Chr2g0331721 | 30.120 | 415 | 243 | 12 | 39 | 443 | 48 | 425 | 8.16e-43 | 157 |
| Msa0427740 | MtrunA17_Chr8g0376991 | 27.902 | 448 | 281 | 12 | 39 | 479 | 24 | 436 | 3.09e-42 | 155 |
| Msa0427740 | MtrunA17_Chr4g0057851 | 28.989 | 445 | 274 | 10 | 39 | 476 | 11 | 420 | 1.13e-40 | 151 |
| Msa0427740 | MtrunA17_Chr5g0422741 | 30.679 | 427 | 250 | 13 | 27 | 445 | 17 | 405 | 4.72e-39 | 147 |
| Msa0427740 | MtrunA17_Chr1g0184721 | 26.872 | 454 | 293 | 12 | 32 | 478 | 16 | 437 | 1.44e-38 | 145 |
| Msa0427740 | MtrunA17_Chr6g0458921 | 29.821 | 446 | 276 | 10 | 39 | 479 | 15 | 428 | 4.85e-35 | 135 |
| Msa0427740 | MtrunA17_Chr6g0459031 | 29.821 | 446 | 276 | 10 | 39 | 479 | 15 | 428 | 5.04e-35 | 135 |
| Msa0427740 | MtrunA17_Chr3g0103261 | 49.587 | 121 | 61 | 0 | 31 | 151 | 16 | 136 | 6.24e-35 | 128 |
| Msa0427740 | MtrunA17_Chr1g0206861 | 50.781 | 128 | 61 | 2 | 17 | 143 | 1 | 127 | 3.94e-34 | 125 |
| Msa0427740 | MtrunA17_Chr1g0206841 | 63.830 | 94 | 34 | 0 | 27 | 120 | 10 | 103 | 8.95e-34 | 123 |
| Msa0427740 | MtrunA17_Chr2g0328081 | 29.372 | 446 | 280 | 8 | 38 | 479 | 14 | 428 | 1.10e-33 | 132 |
| Msa0427740 | MtrunA17_Chr6g0459021 | 28.571 | 469 | 291 | 12 | 20 | 479 | 14 | 447 | 2.62e-33 | 131 |
| Msa0427740 | MtrunA17_Chr6g0459011 | 29.621 | 422 | 261 | 9 | 54 | 471 | 1 | 390 | 3.12e-33 | 130 |
| Msa0427740 | MtrunA17_Chr7g0230011 | 28.194 | 454 | 272 | 11 | 39 | 479 | 31 | 443 | 3.56e-33 | 130 |
| Msa0427740 | MtrunA17_Chr3g0077651 | 28.381 | 451 | 279 | 12 | 39 | 479 | 53 | 469 | 5.40e-33 | 130 |
| Msa0427740 | MtrunA17_Chr1g0198081 | 26.608 | 451 | 285 | 17 | 44 | 481 | 64 | 481 | 5.63e-32 | 127 |
| Msa0427740 | MtrunA17_Chr1g0198531 | 28.571 | 427 | 261 | 13 | 27 | 445 | 13 | 403 | 7.27e-32 | 127 |
| Msa0427740 | MtrunA17_Chr4g0027241 | 26.941 | 438 | 270 | 16 | 20 | 440 | 17 | 421 | 1.57e-31 | 126 |
| Msa0427740 | MtrunA17_Chr6g0459001 | 28.184 | 479 | 283 | 13 | 38 | 479 | 22 | 476 | 1.18e-30 | 124 |
| Msa0427740 | MtrunA17_Chr3g0122921 | 25.887 | 479 | 288 | 13 | 17 | 479 | 1 | 428 | 1.98e-30 | 122 |
| Msa0427740 | MtrunA17_Chr1g0198541 | 27.111 | 450 | 284 | 11 | 34 | 475 | 20 | 433 | 2.81e-30 | 122 |
| Msa0427740 | MtrunA17_Chr1g0146351 | 58.586 | 99 | 40 | 1 | 48 | 146 | 13 | 110 | 3.37e-29 | 110 |
| Msa0427740 | MtrunA17_Chr8g0387941 | 23.899 | 477 | 312 | 16 | 20 | 479 | 6 | 448 | 3.91e-26 | 110 |
| Msa0427740 | MtrunA17_Chr4g0038711 | 24.729 | 461 | 295 | 14 | 39 | 477 | 71 | 501 | 3.36e-22 | 99.4 |
| Msa0427740 | MtrunA17_Chr5g0436281 | 26.128 | 421 | 258 | 16 | 69 | 479 | 4 | 381 | 1.33e-19 | 90.5 |
| Msa0427740 | MtrunA17_Chr3g0143701 | 22.560 | 461 | 309 | 13 | 26 | 468 | 68 | 498 | 1.44e-19 | 91.7 |
| Msa0427740 | MtrunA17_Chr5g0406351 | 23.570 | 437 | 286 | 12 | 39 | 459 | 108 | 512 | 8.40e-17 | 83.2 |
| Msa0427740 | MtrunA17_Chr3g0112971 | 25.061 | 407 | 250 | 15 | 84 | 479 | 72 | 434 | 5.44e-15 | 77.0 |
| Msa0427740 | MtrunA17_Chr5g0406331 | 23.488 | 430 | 280 | 12 | 39 | 452 | 87 | 483 | 2.17e-14 | 75.5 |
| Msa0427740 | MtrunA17_Chr1g0159751 | 39.024 | 82 | 43 | 1 | 281 | 362 | 1 | 75 | 5.41e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427740 | AT5G09220.1 | 65.639 | 454 | 152 | 2 | 29 | 478 | 36 | 489 | 0.0 | 644 |
| Msa0427740 | AT5G63850.1 | 63.676 | 457 | 162 | 2 | 29 | 481 | 9 | 465 | 0.0 | 628 |
| Msa0427740 | AT1G77380.1 | 65.419 | 454 | 154 | 1 | 28 | 478 | 19 | 472 | 0.0 | 618 |
| Msa0427740 | AT1G44100.1 | 61.638 | 464 | 167 | 4 | 26 | 479 | 15 | 477 | 0.0 | 611 |
| Msa0427740 | AT1G10010.1 | 52.863 | 454 | 210 | 2 | 29 | 478 | 18 | 471 | 0.0 | 516 |
| Msa0427740 | AT1G10010.2 | 52.863 | 454 | 210 | 2 | 29 | 478 | 19 | 472 | 0.0 | 516 |
| Msa0427740 | AT1G58360.1 | 53.027 | 479 | 214 | 4 | 4 | 478 | 9 | 480 | 4.64e-180 | 513 |
| Msa0427740 | AT5G49630.1 | 54.585 | 458 | 202 | 4 | 28 | 479 | 22 | 479 | 2.00e-177 | 506 |
| Msa0427740 | AT5G23810.1 | 46.753 | 462 | 236 | 5 | 15 | 468 | 2 | 461 | 4.23e-136 | 401 |
| Msa0427740 | AT5G23810.2 | 47.493 | 339 | 173 | 3 | 15 | 350 | 2 | 338 | 5.10e-100 | 305 |
| Msa0427740 | AT5G23810.4 | 44.747 | 257 | 137 | 3 | 15 | 268 | 2 | 256 | 2.39e-67 | 217 |
| Msa0427740 | AT5G23810.5 | 43.541 | 209 | 115 | 2 | 15 | 220 | 2 | 210 | 7.90e-51 | 173 |
| Msa0427740 | AT5G23810.3 | 43.541 | 209 | 115 | 2 | 15 | 220 | 2 | 210 | 7.90e-51 | 173 |
| Msa0427740 | AT5G40780.1 | 28.378 | 444 | 284 | 9 | 39 | 479 | 34 | 446 | 3.27e-43 | 159 |
| Msa0427740 | AT1G48640.1 | 28.788 | 462 | 291 | 10 | 24 | 479 | 24 | 453 | 2.15e-42 | 156 |
| Msa0427740 | AT5G40780.3 | 28.205 | 429 | 274 | 9 | 54 | 479 | 1 | 398 | 1.50e-39 | 147 |
| Msa0427740 | AT5G40780.2 | 28.205 | 429 | 274 | 9 | 54 | 479 | 1 | 398 | 1.50e-39 | 147 |
| Msa0427740 | AT1G24400.1 | 29.139 | 453 | 269 | 12 | 39 | 479 | 29 | 441 | 4.99e-39 | 147 |
| Msa0427740 | AT1G67640.1 | 29.464 | 448 | 274 | 10 | 39 | 479 | 29 | 441 | 1.40e-37 | 143 |
| Msa0427740 | AT3G01760.1 | 26.724 | 464 | 303 | 11 | 19 | 474 | 8 | 442 | 1.99e-36 | 140 |
| Msa0427740 | AT1G71680.1 | 29.130 | 460 | 289 | 10 | 26 | 479 | 20 | 448 | 7.53e-35 | 135 |
| Msa0427740 | AT1G61270.1 | 28.670 | 436 | 267 | 11 | 39 | 465 | 34 | 434 | 8.86e-35 | 135 |
| Msa0427740 | AT1G71680.2 | 31.672 | 341 | 210 | 9 | 26 | 360 | 20 | 343 | 3.81e-32 | 126 |
| Msa0427740 | AT1G25530.1 | 28.054 | 442 | 269 | 13 | 38 | 467 | 27 | 431 | 2.71e-30 | 122 |
| Msa0427740 | AT1G08230.2 | 25.885 | 452 | 298 | 12 | 37 | 479 | 26 | 449 | 2.73e-27 | 114 |
| Msa0427740 | AT5G41800.1 | 24.672 | 458 | 295 | 16 | 37 | 479 | 25 | 447 | 2.49e-23 | 102 |
| Msa0427740 | AT3G55740.1 | 25.167 | 449 | 279 | 18 | 44 | 479 | 33 | 437 | 6.52e-21 | 95.5 |
| Msa0427740 | AT3G55740.2 | 25.416 | 421 | 261 | 16 | 69 | 479 | 4 | 381 | 7.20e-21 | 94.7 |
| Msa0427740 | AT3G55740.3 | 25.416 | 421 | 261 | 16 | 69 | 479 | 4 | 381 | 7.20e-21 | 94.7 |
| Msa0427740 | AT1G08230.4 | 28.526 | 312 | 199 | 7 | 174 | 479 | 37 | 330 | 2.13e-20 | 92.4 |
| Msa0427740 | AT1G08230.6 | 28.526 | 312 | 199 | 7 | 174 | 479 | 37 | 330 | 2.13e-20 | 92.4 |
| Msa0427740 | AT1G08230.5 | 28.526 | 312 | 199 | 7 | 174 | 479 | 37 | 330 | 2.13e-20 | 92.4 |
| Msa0427740 | AT1G08230.3 | 28.846 | 312 | 198 | 8 | 174 | 479 | 56 | 349 | 3.00e-20 | 92.4 |
| Msa0427740 | AT2G36590.1 | 25.126 | 398 | 245 | 16 | 44 | 430 | 30 | 385 | 3.50e-19 | 90.1 |
| Msa0427740 | AT2G39890.2 | 23.142 | 471 | 313 | 17 | 17 | 479 | 11 | 440 | 4.32e-19 | 90.1 |
| Msa0427740 | AT2G39890.1 | 23.142 | 471 | 313 | 17 | 17 | 479 | 11 | 440 | 4.32e-19 | 90.1 |
| Msa0427740 | AT2G39890.3 | 23.501 | 417 | 274 | 14 | 69 | 479 | 4 | 381 | 6.33e-18 | 85.9 |
| Msa0427740 | AT4G35180.1 | 23.077 | 442 | 293 | 10 | 21 | 444 | 30 | 442 | 7.57e-12 | 67.8 |
Find 157 sgRNAs with CRISPR-Local
Find 403 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAATTCTCTGTCAATTT+TGG | 0.067119 | 3_2:+78409749 | None:intergenic |
| TGATTGGGGCATTGGGATTT+TGG | 0.112131 | 3_2:-78409602 | Msa0427740:CDS |
| ATCCACTTCCTACTCCATTT+TGG | 0.128680 | 3_2:+78409528 | None:intergenic |
| CGTTGTGGTGACACCGAATT+TGG | 0.176572 | 3_2:-78412529 | Msa0427740:CDS |
| GTACTTCTGCAGGAAATATT+TGG | 0.182217 | 3_2:-78409035 | Msa0427740:three_prime_UTR |
| ATCTTCGTGGTCTATCTTAA+TGG | 0.227125 | 3_2:-78409106 | Msa0427740:three_prime_UTR |
| GCCATCATCGTCATAGTATT+TGG | 0.231930 | 3_2:+78412821 | None:intergenic |
| TTCATTTACAGACGCCTAAT+TGG | 0.231959 | 3_2:-78414853 | Msa0427740:five_prime_UTR |
| TTGCATTCAAGAAGAATAAT+TGG | 0.259206 | 3_2:-78409273 | Msa0427740:three_prime_UTR |
| CTTTCTCGACGAAGGCAAAT+AGG | 0.260797 | 3_2:+78409790 | None:intergenic |
| TCTTCGTGGTCTATCTTAAT+GGG | 0.270464 | 3_2:-78409105 | Msa0427740:three_prime_UTR |
| AAGATACAACACAAATAAAA+TGG | 0.292708 | 3_2:+78409124 | None:intergenic |
| GCTCAGATGGGTTGGATTGC+TGG | 0.293758 | 3_2:-78412619 | Msa0427740:CDS |
| ACAGGAAAGTAAACAGTTAA+AGG | 0.298387 | 3_2:+78409579 | None:intergenic |
| AAAACATATTTACGTTAGTT+TGG | 0.301907 | 3_2:-78409695 | Msa0427740:CDS |
| GGGAACCTGCTCGCCGGATT+TGG | 0.301956 | 3_2:-78409900 | Msa0427740:CDS |
| TAAAATCTATTGCCTCCTTC+TGG | 0.312586 | 3_2:-78409379 | Msa0427740:three_prime_UTR |
| TGCATGGGATATGCTGCTTT+TGG | 0.316047 | 3_2:-78409936 | Msa0427740:CDS |
| GTATCTATTGTGGCTGGTCT+TGG | 0.319531 | 3_2:-78409471 | Msa0427740:CDS |
| TGGTGTCTCAAAAGCATATT+GGG | 0.324806 | 3_2:-78409880 | Msa0427740:CDS |
| GATGGTTGTAACGGTCTTCT+TGG | 0.329872 | 3_2:-78409331 | Msa0427740:three_prime_UTR |
| CTTGGAATTTCCAAAGTTGC+AGG | 0.329872 | 3_2:-78411026 | Msa0427740:intron |
| GGAAATATTTGGAGCCTTGA+TGG | 0.330090 | 3_2:-78409024 | Msa0427740:three_prime_UTR |
| AATAGAAAACGGTACTGTTA+TGG | 0.340529 | 3_2:-78410731 | Msa0427740:intron |
| GAGTAGGAAGTGGATTATTC+TGG | 0.341119 | 3_2:-78409520 | Msa0427740:CDS |
| TTTCTCGACGAAGGCAAATA+GGG | 0.341560 | 3_2:+78409791 | None:intergenic |
| ATAGTTTCTCTTTCCAAATT+CGG | 0.343023 | 3_2:+78412516 | None:intergenic |
| TTCTTCTTGAATGCAACTTC+GGG | 0.345008 | 3_2:+78409280 | None:intergenic |
| TTTGGGAGTGATTGGGGCAT+TGG | 0.355425 | 3_2:-78409610 | Msa0427740:CDS |
| AACCCATACATGATAGCTTT+TGG | 0.357510 | 3_2:-78411155 | Msa0427740:CDS |
| GATGCAGTTAGTAACATTCT+TGG | 0.359420 | 3_2:-78412484 | Msa0427740:intron |
| ACGATGATGGCCGTGTTAAA+CGG | 0.361196 | 3_2:-78412809 | Msa0427740:CDS |
| AAAGAGAAACTATACTTTCA+TGG | 0.361574 | 3_2:-78412506 | Msa0427740:CDS |
| TGTGGCTGGTCTTGGCTCAT+TGG | 0.362801 | 3_2:-78409463 | Msa0427740:CDS |
| TCCACAATTGCTCTTGCTCT+TGG | 0.363333 | 3_2:-78411044 | Msa0427740:CDS |
| TACAAATGAAGATCCCAAAA+TGG | 0.364992 | 3_2:-78409542 | Msa0427740:CDS |
| TTGGCTCATTGGTCGGTGTC+TGG | 0.365007 | 3_2:-78409452 | Msa0427740:CDS |
| ACACTTGGTATGCTCCAAAA+AGG | 0.366510 | 3_2:+78409823 | None:intergenic |
| TTGGGAGTGATTGGGGCATT+GGG | 0.373067 | 3_2:-78409609 | Msa0427740:CDS |
| TGCAGCAATTAGGTAGGAAT+TGG | 0.373886 | 3_2:+78414451 | None:intergenic |
| ATTTCAGAATCTCTCACTCT+TGG | 0.374704 | 3_2:-78414511 | Msa0427740:intron |
| AAAGACGCATGTCATATTTC+AGG | 0.375996 | 3_2:-78411179 | Msa0427740:CDS |
| ATAACAGCTGTGATAGGATC+TGG | 0.377729 | 3_2:-78412667 | Msa0427740:CDS |
| TGATTTAGTACCAATGGTAT+TGG | 0.380556 | 3_2:+78409201 | None:intergenic |
| CACCACATGTTATGAAAATC+TGG | 0.392967 | 3_2:+78411104 | None:intergenic |
| AGGTATATAACCTGCAACTT+TGG | 0.398196 | 3_2:+78411016 | None:intergenic |
| ACGCCAAAAGCTATCATGTA+TGG | 0.400343 | 3_2:+78411152 | None:intergenic |
| TTGGTGTCTCAAAAGCATAT+TGG | 0.403668 | 3_2:-78409881 | Msa0427740:CDS |
| TTATTTGTGTTGTATCTTCG+TGG | 0.405006 | 3_2:-78409119 | Msa0427740:three_prime_UTR |
| ATAGAAAACGGTACTGTTAT+GGG | 0.405404 | 3_2:-78410730 | Msa0427740:intron |
| GTGGAGTCGGCGGTCCAATT+AGG | 0.406438 | 3_2:+78414839 | None:intergenic |
| AACGAAAATGTGCAGCAATT+AGG | 0.415145 | 3_2:+78414441 | None:intergenic |
| TCAAACTTTATAGAGAGATC+AGG | 0.419783 | 3_2:-78414486 | Msa0427740:five_prime_UTR |
| AAAGGTGTACCTGAATTTCC+AGG | 0.430716 | 3_2:+78410599 | None:intergenic |
| ATGGGTTGGATTGCTGGTCC+TGG | 0.431751 | 3_2:-78412613 | Msa0427740:CDS |
| ATGGTTGTAACGGTCTTCTT+GGG | 0.433582 | 3_2:-78409330 | Msa0427740:three_prime_UTR |
| ATTCTTCTTGAATGCAACTT+CGG | 0.436362 | 3_2:+78409279 | None:intergenic |
| TTGGGATCTTATTTCATAAG+TGG | 0.437854 | 3_2:-78409312 | Msa0427740:three_prime_UTR |
| GTTATAATTGATGCTGTGAT+AGG | 0.438753 | 3_2:-78409170 | Msa0427740:three_prime_UTR |
| GGTCTATAGCTCAGATGGGT+TGG | 0.444852 | 3_2:-78412627 | Msa0427740:CDS |
| CTGGGGTGCTCTCCTTAGCC+TGG | 0.452285 | 3_2:-78412648 | Msa0427740:CDS |
| GGGCCCAGTGTTAAGATTTG+TGG | 0.452949 | 3_2:-78412223 | Msa0427740:CDS |
| GAAAATCTGGAATTTGAGAA+AGG | 0.460822 | 3_2:+78411117 | None:intergenic |
| ACCACTAGGCAGCCGCCTTG+TGG | 0.468871 | 3_2:+78414820 | None:intergenic |
| AGCCTGGTCTATAGCTCAGA+TGG | 0.469391 | 3_2:-78412632 | Msa0427740:CDS |
| CTGCCTCATTGTATCTATTG+TGG | 0.469595 | 3_2:-78409481 | Msa0427740:CDS |
| CTCATTGTATCTATTGTGGC+TGG | 0.472707 | 3_2:-78409477 | Msa0427740:CDS |
| TTATCTGCTCTGTGGCTGCA+TGG | 0.476635 | 3_2:-78409952 | Msa0427740:CDS |
| GAATTCAAAGTTAAAATCCC+TGG | 0.478084 | 3_2:-78409735 | Msa0427740:CDS |
| TTATGTGTCCATACCTCTGA+TGG | 0.478499 | 3_2:-78411203 | Msa0427740:CDS |
| ACTGTTATGGGTAGCCTCAC+AGG | 0.482753 | 3_2:-78410718 | Msa0427740:CDS |
| GACGAAGGCAAATAGGGGTT+GGG | 0.484362 | 3_2:+78409797 | None:intergenic |
| AAGATGGTAGAACACTCTTC+CGG | 0.487867 | 3_2:-78412906 | Msa0427740:CDS |
| CACATTATAACAGCTGTGAT+AGG | 0.489553 | 3_2:-78412673 | Msa0427740:CDS |
| TTAATTTGTACCAATACCAT+TGG | 0.490079 | 3_2:-78409211 | Msa0427740:three_prime_UTR |
| GGCCCAGTGTTAAGATTTGT+GGG | 0.490344 | 3_2:-78412222 | Msa0427740:CDS |
| TCCAAGAGCAAGAGCAATTG+TGG | 0.490585 | 3_2:+78411043 | None:intergenic |
| GTTTAATTCGATAAGCTGAA+TGG | 0.491434 | 3_2:+78409408 | None:intergenic |
| ATTTGCCTTCGTCGAGAAAG+AGG | 0.492276 | 3_2:-78409787 | Msa0427740:CDS |
| AATCCGGCGAGCAGGTTCCC+TGG | 0.492450 | 3_2:+78409903 | None:intergenic |
| TGAATGGTTTGTATTTCTGC+AGG | 0.492604 | 3_2:+78409424 | None:intergenic |
| ACATATTTACGTTAGTTTGG+AGG | 0.492783 | 3_2:-78409692 | Msa0427740:CDS |
| CAATATCTCCACGGTAGCTA+AGG | 0.493540 | 3_2:+78412877 | None:intergenic |
| GAAACTTATGTGGGAGGTGA+TGG | 0.494098 | 3_2:-78409349 | Msa0427740:three_prime_UTR |
| AGCGTGAATTGCAGCGGCAG+TGG | 0.495378 | 3_2:-78414877 | Msa0427740:five_prime_UTR |
| TGCTGCCTCTTTCTCGACGA+AGG | 0.495845 | 3_2:+78409782 | None:intergenic |
| CAAAATCTACGTACTTCTGC+AGG | 0.497196 | 3_2:-78409045 | Msa0427740:three_prime_UTR |
| CGACGAAGGCAAATAGGGGT+TGG | 0.498834 | 3_2:+78409796 | None:intergenic |
| TTTAACTGTTTACTTTCCTG+TGG | 0.499525 | 3_2:-78409577 | Msa0427740:CDS |
| TATCTGCTCTGTGGCTGCAT+GGG | 0.499617 | 3_2:-78409951 | Msa0427740:CDS |
| AGCTACCGTGGAGATATTGT+TGG | 0.499909 | 3_2:-78412873 | Msa0427740:CDS |
| TCCCAAAATGGAGTAGGAAG+TGG | 0.501131 | 3_2:-78409530 | Msa0427740:CDS |
| CATTTATGATTTAGTACCAA+TGG | 0.504869 | 3_2:+78409195 | None:intergenic |
| ACGGTAGCTAAGGTTGGTTC+CGG | 0.506142 | 3_2:+78412887 | None:intergenic |
| AGGCGATGTTTCCAAGACCT+TGG | 0.513092 | 3_2:+78410647 | None:intergenic |
| TGGAATGTAAGAAACTTATG+TGG | 0.520890 | 3_2:-78409359 | Msa0427740:three_prime_UTR |
| AGACACCAAATCCGGCGAGC+AGG | 0.523063 | 3_2:+78409895 | None:intergenic |
| TAACAGCTGTGATAGGATCT+GGG | 0.524232 | 3_2:-78412666 | Msa0427740:CDS |
| AGGCAGCCGCCTTGTGGAGT+CGG | 0.524356 | 3_2:+78414826 | None:intergenic |
| TCCAAATACTATGACGATGA+TGG | 0.532295 | 3_2:-78412822 | Msa0427740:CDS |
| TGACTGTAGACTGGCAAACC+AGG | 0.534144 | 3_2:+78409717 | None:intergenic |
| GCTGGTCTTGGCTCATTGGT+CGG | 0.537162 | 3_2:-78409459 | Msa0427740:CDS |
| CGTGTAAGTGGAGGCAGACA+TGG | 0.545555 | 3_2:+78409073 | None:intergenic |
| CTCGCTGATTGTTATCGTTG+TGG | 0.546122 | 3_2:-78412544 | Msa0427740:CDS |
| CGCCAAAAGCTATCATGTAT+GGG | 0.549420 | 3_2:+78411153 | None:intergenic |
| CATAGTATATCCATAAAAGA+TGG | 0.550433 | 3_2:-78412922 | Msa0427740:intron |
| CAAACTTTATAGAGAGATCA+GGG | 0.555815 | 3_2:-78414485 | Msa0427740:five_prime_UTR |
| GTGGGAGCATGTAGTCCAAA+CGG | 0.556209 | 3_2:+78412693 | None:intergenic |
| CTGCCTAGTGGTGAGGTAGT+CGG | 0.556528 | 3_2:-78414809 | Msa0427740:five_prime_UTR |
| TGGAGATATTGTTGGCATTG+AGG | 0.559066 | 3_2:-78412865 | Msa0427740:CDS |
| ATAGGGGTTGGGCATACACT+TGG | 0.560213 | 3_2:+78409808 | None:intergenic |
| GGGAATGAATAATTCCATCA+AGG | 0.562148 | 3_2:+78409010 | None:intergenic |
| AATCTGAGTCAGGAACCGTT+TGG | 0.563153 | 3_2:-78412708 | Msa0427740:intron |
| TAAGTTTCTTACATTCCAGA+AGG | 0.564332 | 3_2:+78409364 | None:intergenic |
| GCGCCAGGGAACCTGCTCGC+CGG | 0.570329 | 3_2:-78409906 | Msa0427740:CDS |
| TATCCCACAAATCTTAACAC+TGG | 0.570920 | 3_2:+78412219 | None:intergenic |
| GATGGCCGTGTTAAACGGAC+AGG | 0.572114 | 3_2:-78412804 | Msa0427740:intron |
| GTTTCTTACATTCCAGAAGG+AGG | 0.573257 | 3_2:+78409367 | None:intergenic |
| CTATCACAGCTGTTATAATG+TGG | 0.579458 | 3_2:+78412674 | None:intergenic |
| TGAAGATCCCAAAATGGAGT+AGG | 0.579767 | 3_2:-78409536 | Msa0427740:CDS |
| ATCAAATCTCCACCATCAGA+AGG | 0.581249 | 3_2:-78410026 | Msa0427740:CDS |
| GCCTGGTCTATAGCTCAGAT+GGG | 0.582657 | 3_2:-78412631 | Msa0427740:CDS |
| ATCTCCACGGTAGCTAAGGT+TGG | 0.584583 | 3_2:+78412881 | None:intergenic |
| GATATTGTTGGCATTGAGGA+TGG | 0.590897 | 3_2:-78412861 | Msa0427740:CDS |
| TTGGTACTAAATCATAAATG+AGG | 0.591014 | 3_2:-78409192 | Msa0427740:three_prime_UTR |
| CTTAACTCACATCATGCTCA+TGG | 0.591519 | 3_2:+78412144 | None:intergenic |
| ATCCCACAAATCTTAACACT+GGG | 0.591549 | 3_2:+78412220 | None:intergenic |
| TATCACAGCTGTTATAATGT+GGG | 0.593327 | 3_2:+78412675 | None:intergenic |
| TCTATCTTAATGGGGTCATG+TGG | 0.597322 | 3_2:-78409096 | Msa0427740:three_prime_UTR |
| TCGCCGACTACCTCACCACT+AGG | 0.598683 | 3_2:+78414806 | None:intergenic |
| AAAATGTGCAGCAATTAGGT+AGG | 0.598754 | 3_2:+78414445 | None:intergenic |
| ATTGGACCGCCGACTCCACA+AGG | 0.600644 | 3_2:-78414835 | Msa0427740:five_prime_UTR |
| TTCTCGACGAAGGCAAATAG+GGG | 0.607159 | 3_2:+78409792 | None:intergenic |
| TCCACAAGGCGGCTGCCTAG+TGG | 0.608268 | 3_2:-78414821 | Msa0427740:five_prime_UTR |
| GACTGTAGACTGGCAAACCA+GGG | 0.610020 | 3_2:+78409718 | None:intergenic |
| TTATACCTGTCCGTTTAACA+CGG | 0.610345 | 3_2:+78412799 | None:intergenic |
| AAGGCGGCTGCCTAGTGGTG+AGG | 0.610367 | 3_2:-78414816 | Msa0427740:five_prime_UTR |
| AATCAACATTGCGATGAGAG+TGG | 0.611911 | 3_2:+78409650 | None:intergenic |
| CTGAGCTATAGACCAGGCTA+AGG | 0.616886 | 3_2:+78412636 | None:intergenic |
| TGTACGATATACATCTCCAC+AGG | 0.631987 | 3_2:+78409561 | None:intergenic |
| AAGCGTCGGAACAGTGACCC+CGG | 0.633976 | 3_2:-78410692 | Msa0427740:CDS |
| AAAAGAATATGAATAAGCAA+AGG | 0.634204 | 3_2:+78410627 | None:intergenic |
| ACCCATCTGAGCTATAGACC+AGG | 0.634300 | 3_2:+78412630 | None:intergenic |
| CTTCGTGGTCTATCTTAATG+GGG | 0.634365 | 3_2:-78409104 | Msa0427740:three_prime_UTR |
| GGAATGTAAGAAACTTATGT+GGG | 0.635634 | 3_2:-78409358 | Msa0427740:three_prime_UTR |
| GTGGGAGGTGATGGTTGTAA+CGG | 0.638659 | 3_2:-78409340 | Msa0427740:three_prime_UTR |
| CAGCCGCCTTGTGGAGTCGG+CGG | 0.641708 | 3_2:+78414829 | None:intergenic |
| AGCCTCACAGGAGTAAGCGT+CGG | 0.646014 | 3_2:-78410706 | Msa0427740:CDS |
| AACAGCTGTGATAGGATCTG+GGG | 0.646224 | 3_2:-78412665 | Msa0427740:CDS |
| CAATGCCAACAATATCTCCA+CGG | 0.659764 | 3_2:+78412868 | None:intergenic |
| GGAACCAACCTTAGCTACCG+TGG | 0.665944 | 3_2:-78412885 | Msa0427740:CDS |
| TTTGAACTACGTGTAAGTGG+AGG | 0.678296 | 3_2:+78409064 | None:intergenic |
| TGTTGAAGCGTGAATTGCAG+CGG | 0.681101 | 3_2:-78414883 | None:intergenic |
| TTCCGACGCTTACTCCTGTG+AGG | 0.685835 | 3_2:+78410704 | None:intergenic |
| CAGCCACAATAGATACAATG+AGG | 0.686773 | 3_2:+78409478 | None:intergenic |
| ATGTAAGAAACTTATGTGGG+AGG | 0.688654 | 3_2:-78409355 | Msa0427740:three_prime_UTR |
| GGACCGCCGACTCCACAAGG+CGG | 0.742099 | 3_2:-78414832 | Msa0427740:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATACAAAATATTTTTTTG+TGG | - | chr3_2:78410251-78410270 | Msa0427740:intron | 10.0% |
| !!! | TTTGATTAAATTTTAAGAAA+CGG | + | chr3_2:78410706-78410725 | None:intergenic | 10.0% |
| !!! | AAAAAAAAATCATCTTATTT+CGG | + | chr3_2:78411861-78411880 | None:intergenic | 10.0% |
| !!! | ATTTTTTACAAATAGATTAA+AGG | + | chr3_2:78413309-78413328 | None:intergenic | 10.0% |
| !! | TATTAAAATTTAACATGATT+TGG | + | chr3_2:78413354-78413373 | None:intergenic | 10.0% |
| !!! | AATTTTTGTACTTTTGATAT+CGG | + | chr3_2:78409111-78409130 | None:intergenic | 15.0% |
| !! | AACTTATATTAACATCATAA+AGG | + | chr3_2:78409290-78409309 | None:intergenic | 15.0% |
| !! | TATTTAGTATACTATTTAGT+TGG | - | chr3_2:78410065-78410084 | Msa0427740:intron | 15.0% |
| !!! | TTCTATTGAATTTTAAGAAA+TGG | + | chr3_2:78410751-78410770 | None:intergenic | 15.0% |
| !!! | TTGAAGTTATATTTTCTTTA+AGG | - | chr3_2:78412045-78412064 | Msa0427740:intron | 15.0% |
| !!! | TGAAGTTATATTTTCTTTAA+GGG | - | chr3_2:78412046-78412065 | Msa0427740:intron | 15.0% |
| !! | AAAACACAAAATTAAAGAAA+GGG | + | chr3_2:78412252-78412271 | None:intergenic | 15.0% |
| !!! | ACAAATTTTCACTTAATTTT+TGG | - | chr3_2:78412911-78412930 | Msa0427740:exon | 15.0% |
| !!! | TTTATCTAATTTTGTTCAAT+TGG | - | chr3_2:78413127-78413146 | Msa0427740:intron | 15.0% |
| !!! | TTATAACCTCTTTATTTTTA+AGG | - | chr3_2:78413500-78413519 | Msa0427740:intron | 15.0% |
| !!! | GTTATTTTTAACTTCTAAAA+TGG | + | chr3_2:78413566-78413585 | None:intergenic | 15.0% |
| !!! | AATATAAGTTTCATTTTCAG+TGG | - | chr3_2:78409300-78409319 | Msa0427740:three_prime_UTR | 20.0% |
| !!! | ACTCTGTTTTTGTTTTAATT+TGG | - | chr3_2:78409487-78409506 | Msa0427740:CDS | 20.0% |
| !!! | ATGATTTTTAATTCGTTGTT+TGG | - | chr3_2:78409516-78409535 | Msa0427740:CDS | 20.0% |
| !! | ACTTCCTTAATAACAATATT+TGG | + | chr3_2:78409767-78409786 | None:intergenic | 20.0% |
| !!! | AAGGAAGTTTTGTTTTTATT+TGG | - | chr3_2:78409779-78409798 | Msa0427740:CDS | 20.0% |
| !! | GTTTAACGTTAAATTTAAGA+AGG | - | chr3_2:78409874-78409893 | Msa0427740:CDS | 20.0% |
| !! | TAGTATACTAAATACATACA+CGG | + | chr3_2:78410059-78410078 | None:intergenic | 20.0% |
| !! | TTAAACGACAAAATTACAAA+GGG | - | chr3_2:78410397-78410416 | Msa0427740:intron | 20.0% |
| !! | TTACAAAACAATTTATCACA+TGG | + | chr3_2:78411459-78411478 | None:intergenic | 20.0% |
| !!! | GATGATTTTTTTTTTGCTAT+TGG | - | chr3_2:78411867-78411886 | Msa0427740:intron | 20.0% |
| !!! | TAGAAAAAGTTTCTTCTTTT+AGG | + | chr3_2:78412110-78412129 | None:intergenic | 20.0% |
| !! | CAAAACACAAAATTAAAGAA+AGG | + | chr3_2:78412253-78412272 | None:intergenic | 20.0% |
| !!! | TTCTTTAATTTTGTGTTTTG+TGG | - | chr3_2:78412253-78412272 | Msa0427740:intron | 20.0% |
| !!! | TCTTTAATTTTGTGTTTTGT+GGG | - | chr3_2:78412254-78412273 | Msa0427740:intron | 20.0% |
| !! | AATTGGAATATATTGAAGTA+TGG | + | chr3_2:78412432-78412451 | None:intergenic | 20.0% |
| !!! | TATTATCTAGCTTGATTAAT+TGG | + | chr3_2:78412449-78412468 | None:intergenic | 20.0% |
| !! | TGATATATGGTTATATAGTT+TGG | - | chr3_2:78412586-78412605 | Msa0427740:CDS | 20.0% |
| !!! | TAATTTTGTTCAATTGGTTA+TGG | - | chr3_2:78413133-78413152 | Msa0427740:intron | 20.0% |
| !! | AAAAGAATATGAATAAGCAA+AGG | + | chr3_2:78413263-78413282 | None:intergenic | 20.0% |
| !! | AAAACACCTTAAAAATAAAG+AGG | + | chr3_2:78413509-78413528 | None:intergenic | 20.0% |
| !!! | AGATTAGACATTAATTTGTT+TGG | + | chr3_2:78413825-78413844 | None:intergenic | 20.0% |
| !! | AAAACATATTTACGTTAGTT+TGG | - | chr3_2:78414192-78414211 | Msa0427740:intron | 20.0% |
| !! | AAGATACAACACAAATAAAA+TGG | + | chr3_2:78414766-78414785 | None:intergenic | 20.0% |
| !! | TCAAAAGTACAAAAATTCTC+TGG | - | chr3_2:78409114-78409133 | Msa0427740:three_prime_UTR | 25.0% |
| ! | TGAAATTGCAAATTGCAAAT+TGG | + | chr3_2:78409362-78409381 | None:intergenic | 25.0% |
| !!! | TTTTAATTCGTTGTTTGGAT+TGG | - | chr3_2:78409521-78409540 | Msa0427740:CDS | 25.0% |
| !! | GTCTCCAAATATTGTTATTA+AGG | - | chr3_2:78409760-78409779 | Msa0427740:CDS | 25.0% |
| !! | ATTTAAGAAGGTACAAATTG+CGG | - | chr3_2:78409886-78409905 | Msa0427740:CDS | 25.0% |
| !!! | AACAGGGATTTTATTTTTTG+TGG | - | chr3_2:78410103-78410122 | Msa0427740:intron | 25.0% |
| !!! | ACAGGGATTTTATTTTTTGT+GGG | - | chr3_2:78410104-78410123 | Msa0427740:intron | 25.0% |
| !! | TGGAATGATCTTTTATTGAA+GGG | - | chr3_2:78410271-78410290 | Msa0427740:intron | 25.0% |
| ! | GTTAAACGACAAAATTACAA+AGG | - | chr3_2:78410396-78410415 | Msa0427740:intron | 25.0% |
| ! | GTAGATGATTATCAAAATCT+GGG | + | chr3_2:78410556-78410575 | None:intergenic | 25.0% |
| ! | AGTAGATGATTATCAAAATC+TGG | + | chr3_2:78410557-78410576 | None:intergenic | 25.0% |
| ! | TGATAATCATCTACTCTAAA+TGG | - | chr3_2:78410562-78410581 | Msa0427740:intron | 25.0% |
| ! | TTAATCTGAACTTTCTCATA+AGG | - | chr3_2:78410677-78410696 | Msa0427740:CDS | 25.0% |
| ! | TTAAGAAATGGAAACCTTAT+GGG | + | chr3_2:78410739-78410758 | None:intergenic | 25.0% |
| ! | TTTAAGAAATGGAAACCTTA+TGG | + | chr3_2:78410740-78410759 | None:intergenic | 25.0% |
| !! | CATCTTTTATGGATATACTA+TGG | + | chr3_2:78410967-78410986 | None:intergenic | 25.0% |
| ! | CATAGTATATCCATAAAAGA+TGG | - | chr3_2:78410965-78410984 | Msa0427740:intron | 25.0% |
| ! | ATAGTTTCTCTTTCCAAATT+CGG | + | chr3_2:78411374-78411393 | None:intergenic | 25.0% |
| ! | AAAGAGAAACTATACTTTCA+TGG | - | chr3_2:78411381-78411400 | Msa0427740:intron | 25.0% |
| !! | GTTCAGTATTTGAATCTTTT+CGG | - | chr3_2:78411691-78411710 | Msa0427740:intron | 25.0% |
| !!! | GTTTTAAATTGCACTGTAAA+TGG | + | chr3_2:78412410-78412429 | None:intergenic | 25.0% |
| ! | GATAATATTAATTCTGTTGC+TGG | - | chr3_2:78412462-78412481 | Msa0427740:intron | 25.0% |
| ! | CATTTCTTTCTACTGATATA+TGG | - | chr3_2:78412573-78412592 | Msa0427740:CDS | 25.0% |
| ! | ATTGGTTATGGAATAGAAAA+CGG | - | chr3_2:78413145-78413164 | Msa0427740:intron | 25.0% |
| ! | CATTAGTAAGTAATCTATAG+GGG | + | chr3_2:78413429-78413448 | None:intergenic | 25.0% |
| ! | GCATTAGTAAGTAATCTATA+GGG | + | chr3_2:78413430-78413449 | None:intergenic | 25.0% |
| ! | AGCATTAGTAAGTAATCTAT+AGG | + | chr3_2:78413431-78413450 | None:intergenic | 25.0% |
| ! | AGATTACTTACTAATGCTAT+AGG | - | chr3_2:78413433-78413452 | Msa0427740:intron | 25.0% |
| ! | AATTCTTCTTATCAGTACTT+AGG | + | chr3_2:78413626-78413645 | None:intergenic | 25.0% |
| ! | TAACTATTAAGGCTATATCT+TGG | + | chr3_2:78413651-78413670 | None:intergenic | 25.0% |
| !! | AGATATAGCCTTAATAGTTA+AGG | - | chr3_2:78413651-78413670 | Msa0427740:intron | 25.0% |
| !! | GATATAGCCTTAATAGTTAA+GGG | - | chr3_2:78413652-78413671 | Msa0427740:intron | 25.0% |
| ! | AATGTCTAATCTAATTACAC+AGG | - | chr3_2:78413833-78413852 | Msa0427740:intron | 25.0% |
| !! | TTGAATTCTCTGTCAATTTT+GGG | + | chr3_2:78414140-78414159 | None:intergenic | 25.0% |
| !! | TTTGAATTCTCTGTCAATTT+TGG | + | chr3_2:78414141-78414160 | None:intergenic | 25.0% |
| ! | TTGCATTCAAGAAGAATAAT+TGG | - | chr3_2:78414614-78414633 | Msa0427740:intron | 25.0% |
| !!! | TTAATTTGTACCAATACCAT+TGG | - | chr3_2:78414676-78414695 | Msa0427740:intron | 25.0% |
| ! | CATTTATGATTTAGTACCAA+TGG | + | chr3_2:78414695-78414714 | None:intergenic | 25.0% |
| ! | TTGGTACTAAATCATAAATG+AGG | - | chr3_2:78414695-78414714 | Msa0427740:intron | 25.0% |
| TCAAACTTTATAGAGAGATC+AGG | - | chr3_2:78409401-78409420 | Msa0427740:exon | 30.0% | |
| CAAACTTTATAGAGAGATCA+GGG | - | chr3_2:78409402-78409421 | Msa0427740:exon | 30.0% | |
| TAAAACAAAAACAGAGTGTG+TGG | + | chr3_2:78409484-78409503 | None:intergenic | 30.0% | |
| !! | CTGAACTTAACTTGTTAATC+TGG | - | chr3_2:78409612-78409631 | Msa0427740:CDS | 30.0% |
| !! | CTTAACTTGTTAATCTGGTT+TGG | - | chr3_2:78409617-78409636 | Msa0427740:CDS | 30.0% |
| !! | TTTTCTGTTTCTTTATGACC+TGG | - | chr3_2:78409655-78409674 | Msa0427740:CDS | 30.0% |
| ! | TTTCTGTTTCTTTATGACCT+GGG | - | chr3_2:78409656-78409675 | Msa0427740:CDS | 30.0% |
| CACACAAACACATTTAATAC+AGG | - | chr3_2:78409947-78409966 | Msa0427740:CDS | 30.0% | |
| AAATACATACACGGAATGAT+AGG | + | chr3_2:78410050-78410069 | None:intergenic | 30.0% | |
| ATACTATTTAGTTGGTCAGT+TGG | - | chr3_2:78410073-78410092 | Msa0427740:intron | 30.0% | |
| TACTATTTAGTTGGTCAGTT+GGG | - | chr3_2:78410074-78410093 | Msa0427740:intron | 30.0% | |
| ! | TGGGATGATCTTTTATACAA+GGG | - | chr3_2:78410123-78410142 | Msa0427740:intron | 30.0% |
| ! | GATCTTTTATACAAGGGATT+TGG | - | chr3_2:78410129-78410148 | Msa0427740:intron | 30.0% |
| ! | GTGGAATGATCTTTTATTGA+AGG | - | chr3_2:78410270-78410289 | Msa0427740:intron | 30.0% |
| ! | GATCTTTTATTGAAGGGATT+TGG | - | chr3_2:78410277-78410296 | Msa0427740:intron | 30.0% |
| ACAAAATTACAAAGGGAACA+TGG | - | chr3_2:78410404-78410423 | Msa0427740:intron | 30.0% | |
| ATTTATCCGGCAAAGAAAAA+GGG | - | chr3_2:78410477-78410496 | Msa0427740:intron | 30.0% | |
| ! | ATGGTTATTTGCTTCTGAAA+TGG | + | chr3_2:78410618-78410637 | None:intergenic | 30.0% |
| ! | CACTCATTTTGCCAAAATTT+TGG | - | chr3_2:78410641-78410660 | Msa0427740:CDS | 30.0% |
| TTCAGATTAAAAATCCCAAG+TGG | + | chr3_2:78410667-78410686 | None:intergenic | 30.0% | |
| CAAATTTGAACTTTCCCATA+AGG | - | chr3_2:78410722-78410741 | Msa0427740:CDS | 30.0% | |
| TATTGGAATAGATCGGTTAT+CGG | + | chr3_2:78410800-78410819 | None:intergenic | 30.0% | |
| ! | TGTGTAGTATTGGAATAGAT+CGG | + | chr3_2:78410807-78410826 | None:intergenic | 30.0% |
| TCAAGTAAACTGTGTAGTAT+TGG | + | chr3_2:78410817-78410836 | None:intergenic | 30.0% | |
| ! | TTTTATGGATATACTATGGC+AGG | + | chr3_2:78410963-78410982 | None:intergenic | 30.0% |
| AATATCATATCACCGAATCA+AGG | + | chr3_2:78411150-78411169 | None:intergenic | 30.0% | |
| TATCACAGCTGTTATAATGT+GGG | + | chr3_2:78411215-78411234 | None:intergenic | 30.0% | |
| GATGATGCTGAAAAATATCA+TGG | + | chr3_2:78411302-78411321 | None:intergenic | 30.0% | |
| AACTACAGACATAGAAACTT+GGG | + | chr3_2:78411532-78411551 | None:intergenic | 30.0% | |
| ACACGTTATAATGCATGTTA+TGG | + | chr3_2:78411635-78411654 | None:intergenic | 30.0% | |
| GTGTTTGTTTGCGTTTAATT+GGG | + | chr3_2:78411911-78411930 | None:intergenic | 30.0% | |
| TGTGTTTGTTTGCGTTTAAT+TGG | + | chr3_2:78411912-78411931 | None:intergenic | 30.0% | |
| !! | TTGTTTGAATCAGCTGATTT+TGG | - | chr3_2:78412638-78412657 | Msa0427740:CDS | 30.0% |
| ! | GAAAATCTGGAATTTGAGAA+AGG | + | chr3_2:78412773-78412792 | None:intergenic | 30.0% |
| ! | TTCCAGATTTTCATAACATG+TGG | - | chr3_2:78412781-78412800 | Msa0427740:intron | 30.0% |
| TGTATCGAACAAATTGAAGT+AGG | + | chr3_2:78412894-78412913 | None:intergenic | 30.0% | |
| CTATAGTTCAAGACTTCAAA+GGG | + | chr3_2:78412958-78412977 | None:intergenic | 30.0% | |
| TTACTGCAGAAAACTTCTTA+CGG | - | chr3_2:78412980-78412999 | Msa0427740:intron | 30.0% | |
| CTTCTTACGGTTTAAAAATG+TGG | - | chr3_2:78412993-78413012 | Msa0427740:intron | 30.0% | |
| CTTGAACTTATAAACTGTGT+AGG | + | chr3_2:78413060-78413079 | None:intergenic | 30.0% | |
| AATAGAAAACGGTACTGTTA+TGG | - | chr3_2:78413156-78413175 | Msa0427740:intron | 30.0% | |
| ATAGAAAACGGTACTGTTAT+GGG | - | chr3_2:78413157-78413176 | Msa0427740:intron | 30.0% | |
| ! | TTCATATTCTTTTGTTCTCC+TGG | - | chr3_2:78413270-78413289 | Msa0427740:intron | 30.0% |
| AAAAAACCTTTAGCATGTGA+GGG | + | chr3_2:78413469-78413488 | None:intergenic | 30.0% | |
| TAAAAAACCTTTAGCATGTG+AGG | + | chr3_2:78413470-78413489 | None:intergenic | 30.0% | |
| ATATGCACCCTTAACTATTA+AGG | + | chr3_2:78413662-78413681 | None:intergenic | 30.0% | |
| ! | AATAGTTAAGGGTGCATATT+AGG | - | chr3_2:78413663-78413682 | Msa0427740:intron | 30.0% |
| !! | CAACATGTAAGTGATTTGTT+TGG | + | chr3_2:78413766-78413785 | None:intergenic | 30.0% |
| GAATTCAAAGTTAAAATCCC+TGG | - | chr3_2:78414152-78414171 | Msa0427740:intron | 30.0% | |
| !!! | AATATGTTTTGACTGTAGAC+TGG | + | chr3_2:78414182-78414201 | None:intergenic | 30.0% |
| ! | ACATATTTACGTTAGTTTGG+AGG | - | chr3_2:78414195-78414214 | Msa0427740:intron | 30.0% |
| ACAGGAAAGTAAACAGTTAA+AGG | + | chr3_2:78414311-78414330 | None:intergenic | 30.0% | |
| TTTAACTGTTTACTTTCCTG+TGG | - | chr3_2:78414310-78414329 | Msa0427740:intron | 30.0% | |
| TACAAATGAAGATCCCAAAA+TGG | - | chr3_2:78414345-78414364 | Msa0427740:intron | 30.0% | |
| GTTTAATTCGATAAGCTGAA+TGG | + | chr3_2:78414482-78414501 | None:intergenic | 30.0% | |
| TAAGTTTCTTACATTCCAGA+AGG | + | chr3_2:78414526-78414545 | None:intergenic | 30.0% | |
| TGGAATGTAAGAAACTTATG+TGG | - | chr3_2:78414528-78414547 | Msa0427740:intron | 30.0% | |
| GGAATGTAAGAAACTTATGT+GGG | - | chr3_2:78414529-78414548 | Msa0427740:intron | 30.0% | |
| ! | TTGGGATCTTATTTCATAAG+TGG | - | chr3_2:78414575-78414594 | Msa0427740:intron | 30.0% |
| ATTCTTCTTGAATGCAACTT+CGG | + | chr3_2:78414611-78414630 | None:intergenic | 30.0% | |
| TGATTTAGTACCAATGGTAT+TGG | + | chr3_2:78414689-78414708 | None:intergenic | 30.0% | |
| GTTATAATTGATGCTGTGAT+AGG | - | chr3_2:78414717-78414736 | Msa0427740:intron | 30.0% | |
| TTATTTGTGTTGTATCTTCG+TGG | - | chr3_2:78414768-78414787 | Msa0427740:intron | 30.0% | |
| TTCATTTACAGACGCCTAAT+TGG | - | chr3_2:78409034-78409053 | Msa0427740:three_prime_UTR | 35.0% | |
| !!! | TCCCTTTTAATTTTGACCAC+TGG | - | chr3_2:78409193-78409212 | Msa0427740:three_prime_UTR | 35.0% |
| GCCAGTGGTCAAAATTAAAA+GGG | + | chr3_2:78409197-78409216 | None:intergenic | 35.0% | |
| AGCCAGTGGTCAAAATTAAA+AGG | + | chr3_2:78409198-78409217 | None:intergenic | 35.0% | |
| TTCACTAAAAATAGAGCCAG+TGG | + | chr3_2:78409212-78409231 | None:intergenic | 35.0% | |
| ATTTCAGAATCTCTCACTCT+TGG | - | chr3_2:78409376-78409395 | Msa0427740:three_prime_UTR | 35.0% | |
| AAAATGTGCAGCAATTAGGT+AGG | + | chr3_2:78409445-78409464 | None:intergenic | 35.0% | |
| AACGAAAATGTGCAGCAATT+AGG | + | chr3_2:78409449-78409468 | None:intergenic | 35.0% | |
| TTCTTTATGACCTGGGTAAT+TGG | - | chr3_2:78409663-78409682 | Msa0427740:CDS | 35.0% | |
| ! | ACTGATTCTTAGCATGTGTT+TGG | - | chr3_2:78409803-78409822 | Msa0427740:CDS | 35.0% |
| TTCTTAGCATGTGTTTGGAT+TGG | - | chr3_2:78409808-78409827 | Msa0427740:CDS | 35.0% | |
| AGATAACTATTGTGACGTGA+AGG | + | chr3_2:78409834-78409853 | None:intergenic | 35.0% | |
| TATCTTCTCCTTTAGACATG+CGG | + | chr3_2:78409922-78409941 | None:intergenic | 35.0% | |
| ! | TTCAATGTCAGGTTGTTACT+CGG | + | chr3_2:78410005-78410024 | None:intergenic | 35.0% |
| ! | GTGGGATGATCTTTTATACA+AGG | - | chr3_2:78410122-78410141 | Msa0427740:intron | 35.0% |
| !! | GATTTGGCTTGAGTGAAATA+AGG | - | chr3_2:78410145-78410164 | Msa0427740:intron | 35.0% |
| AAATTACAAAGGGAACATGG+AGG | - | chr3_2:78410407-78410426 | Msa0427740:intron | 35.0% | |
| AATTACAAAGGGAACATGGA+GGG | - | chr3_2:78410408-78410427 | Msa0427740:intron | 35.0% | |
| CATTTATCCGGCAAAGAAAA+AGG | - | chr3_2:78410476-78410495 | Msa0427740:intron | 35.0% | |
| TTTATCCGGCAAAGAAAAAG+GGG | - | chr3_2:78410478-78410497 | Msa0427740:intron | 35.0% | |
| ! | TTTAACTTCACTCTCAAGTG+AGG | + | chr3_2:78410517-78410536 | None:intergenic | 35.0% |
| AAGTTAAATCCCAATGTGAG+TGG | - | chr3_2:78410529-78410548 | Msa0427740:intron | 35.0% | |
| TTTGGCAAAATGAGTGTACA+TGG | + | chr3_2:78410637-78410656 | None:intergenic | 35.0% | |
| ATTGGAATAGATCGGTTATC+GGG | + | chr3_2:78410799-78410818 | None:intergenic | 35.0% | |
| AAAGCATGCACAAAAGAAAG+AGG | + | chr3_2:78410858-78410877 | None:intergenic | 35.0% | |
| ! | GAGTGTTCTACCATCTTTTA+TGG | + | chr3_2:78410978-78410997 | None:intergenic | 35.0% |
| TCCAAATACTATGACGATGA+TGG | - | chr3_2:78411065-78411084 | Msa0427740:CDS | 35.0% | |
| TTATACCTGTCCGTTTAACA+CGG | + | chr3_2:78411091-78411110 | None:intergenic | 35.0% | |
| CTATCACAGCTGTTATAATG+TGG | + | chr3_2:78411216-78411235 | None:intergenic | 35.0% | |
| CACATTATAACAGCTGTGAT+AGG | - | chr3_2:78411214-78411233 | Msa0427740:CDS | 35.0% | |
| CTGAAAAATATCATGGATCC+AGG | + | chr3_2:78411295-78411314 | None:intergenic | 35.0% | |
| GATGCAGTTAGTAACATTCT+TGG | - | chr3_2:78411403-78411422 | Msa0427740:intron | 35.0% | |
| CAACTACAGACATAGAAACT+TGG | + | chr3_2:78411533-78411552 | None:intergenic | 35.0% | |
| ! | TGCATTATAACGTGTTTTGC+AGG | - | chr3_2:78411640-78411659 | Msa0427740:intron | 35.0% |
| ! | ATTATAACGTGTTTTGCAGG+CGG | - | chr3_2:78411643-78411662 | Msa0427740:intron | 35.0% |
| ATCCCACAAATCTTAACACT+GGG | + | chr3_2:78411670-78411689 | None:intergenic | 35.0% | |
| TATCCCACAAATCTTAACAC+TGG | + | chr3_2:78411671-78411690 | None:intergenic | 35.0% | |
| !! | AATCTTTTCGGAAGTGCAAT+AGG | - | chr3_2:78411703-78411722 | Msa0427740:intron | 35.0% |
| !!! | TTTTTTTGCTATTGGCCAAG+TGG | - | chr3_2:78411875-78411894 | Msa0427740:intron | 35.0% |
| TGTTACAAGTTACAACCTAG+TGG | + | chr3_2:78412009-78412028 | None:intergenic | 35.0% | |
| TTTCTTAACATGTGCCCTTA+GGG | + | chr3_2:78412087-78412106 | None:intergenic | 35.0% | |
| !! | AATCATTAACTTGTGCCTTG+AGG | - | chr3_2:78412210-78412229 | Msa0427740:CDS | 35.0% |
| !! | ATCATTAACTTGTGCCTTGA+GGG | - | chr3_2:78412211-78412230 | Msa0427740:CDS | 35.0% |
| ! | TGTGTTTTGTGGGATTCAAA+TGG | - | chr3_2:78412264-78412283 | Msa0427740:intron | 35.0% |
| ! | CTGGCAGTTGCATTTTATTA+TGG | - | chr3_2:78412481-78412500 | Msa0427740:intron | 35.0% |
| TGATGACAGTTGAACTTGTA+TGG | - | chr3_2:78412610-78412629 | Msa0427740:CDS | 35.0% | |
| GATGACAGTTGAACTTGTAT+GGG | - | chr3_2:78412611-78412630 | Msa0427740:CDS | 35.0% | |
| AAAGACGCATGTCATATTTC+AGG | - | chr3_2:78412708-78412727 | Msa0427740:intron | 35.0% | |
| ! | AACCCATACATGATAGCTTT+TGG | - | chr3_2:78412732-78412751 | Msa0427740:intron | 35.0% |
| CACCACATGTTATGAAAATC+TGG | + | chr3_2:78412786-78412805 | None:intergenic | 35.0% | |
| ! | CAGATTTTCATAACATGTGG+TGG | - | chr3_2:78412784-78412803 | Msa0427740:intron | 35.0% |
| AGGTATATAACCTGCAACTT+TGG | + | chr3_2:78412874-78412893 | None:intergenic | 35.0% | |
| CCTATAGTTCAAGACTTCAA+AGG | + | chr3_2:78412959-78412978 | None:intergenic | 35.0% | |
| !! | CCTTTGAAGTCTTGAACTAT+AGG | - | chr3_2:78412956-78412975 | Msa0427740:intron | 35.0% |
| ! | TTTTCTGCATGTGATCTGAT+AGG | + | chr3_2:78413036-78413055 | None:intergenic | 35.0% |
| ! | TTTTGTTCTCCTGGAAATTC+AGG | - | chr3_2:78413279-78413298 | Msa0427740:intron | 35.0% |
| AAAAACCTTTAGCATGTGAG+GGG | + | chr3_2:78413468-78413487 | None:intergenic | 35.0% | |
| !! | TTCATTGCTTTTCCTTCTGA+TGG | + | chr3_2:78413876-78413895 | None:intergenic | 35.0% |
| ! | ACAACATTTTATCTGCTCTG+TGG | - | chr3_2:78413927-78413946 | Msa0427740:intron | 35.0% |
| ! | GCTATCGTTATTCACCTTTT+TGG | - | chr3_2:78414050-78414069 | Msa0427740:intron | 35.0% |
| AGAAAGAGGCAGCAAAAAAA+TGG | - | chr3_2:78414114-78414133 | Msa0427740:intron | 35.0% | |
| !! | TCCATTTTTCAACGACGTTT+TGG | - | chr3_2:78414259-78414278 | Msa0427740:intron | 35.0% |
| !! | CCATTTTTCAACGACGTTTT+GGG | - | chr3_2:78414260-78414279 | Msa0427740:intron | 35.0% |
| ! | TGAATGGTTTGTATTTCTGC+AGG | + | chr3_2:78414466-78414485 | None:intergenic | 35.0% |
| ! | AGGAGGCAATAGATTTTATG+TGG | + | chr3_2:78414506-78414525 | None:intergenic | 35.0% |
| TAAAATCTATTGCCTCCTTC+TGG | - | chr3_2:78414508-78414527 | Msa0427740:intron | 35.0% | |
| ATGTAAGAAACTTATGTGGG+AGG | - | chr3_2:78414532-78414551 | Msa0427740:intron | 35.0% | |
| TTCTTCTTGAATGCAACTTC+GGG | + | chr3_2:78414610-78414629 | None:intergenic | 35.0% | |
| ATCTTCGTGGTCTATCTTAA+TGG | - | chr3_2:78414781-78414800 | Msa0427740:five_prime_UTR | 35.0% | |
| TCTTCGTGGTCTATCTTAAT+GGG | - | chr3_2:78414782-78414801 | Msa0427740:five_prime_UTR | 35.0% | |
| ! | GATTTTGAACTACGTGTAAG+TGG | + | chr3_2:78414829-78414848 | None:intergenic | 35.0% |
| GTACTTCTGCAGGAAATATT+TGG | - | chr3_2:78414852-78414871 | Msa0427740:five_prime_UTR | 35.0% | |
| GGGAATGAATAATTCCATCA+AGG | + | chr3_2:78414880-78414899 | None:intergenic | 35.0% | |
| TGCAGCAATTAGGTAGGAAT+TGG | + | chr3_2:78409439-78409458 | None:intergenic | 40.0% | |
| AACATAGCGTCTTCAATGTC+AGG | + | chr3_2:78410016-78410035 | None:intergenic | 40.0% | |
| !!! | GTCAGTTGGGTTTTGAAACA+GGG | - | chr3_2:78410087-78410106 | Msa0427740:intron | 40.0% |
| ! | GATTTGGCTCGAGTGAAATA+AGG | - | chr3_2:78410293-78410312 | Msa0427740:intron | 40.0% |
| TTATCCGGCAAAGAAAAAGG+GGG | - | chr3_2:78410479-78410498 | Msa0427740:intron | 40.0% | |
| ! | TTTACCCCCTTTTTCTTTGC+CGG | + | chr3_2:78410486-78410505 | None:intergenic | 40.0% |
| CACTCTCAAGTGAGGATAAA+TGG | + | chr3_2:78410509-78410528 | None:intergenic | 40.0% | |
| !! | TTGCCAAAATTTTGGCCACT+TGG | - | chr3_2:78410649-78410668 | Msa0427740:CDS | 40.0% |
| !! | TGCCAAAATTTTGGCCACTT+GGG | - | chr3_2:78410650-78410669 | Msa0427740:CDS | 40.0% |
| ! | ATCCCAAGTGGCCAAAATTT+TGG | + | chr3_2:78410655-78410674 | None:intergenic | 40.0% |
| GGTTATCGGGTAAAATGAGA+GGG | + | chr3_2:78410786-78410805 | None:intergenic | 40.0% | |
| CATGCACAAAAGAAAGAGGT+TGG | + | chr3_2:78410854-78410873 | None:intergenic | 40.0% | |
| GTTGCATTCACAGATCACAA+AGG | + | chr3_2:78410883-78410902 | None:intergenic | 40.0% | |
| TGGCAGGACAAATATAAGTG+AGG | + | chr3_2:78410947-78410966 | None:intergenic | 40.0% | |
| AAGATGGTAGAACACTCTTC+CGG | - | chr3_2:78410981-78411000 | Msa0427740:intron | 40.0% | |
| CAATGCCAACAATATCTCCA+CGG | + | chr3_2:78411022-78411041 | None:intergenic | 40.0% | |
| TGGAGATATTGTTGGCATTG+AGG | - | chr3_2:78411022-78411041 | Msa0427740:intron | 40.0% | |
| ! | GATATTGTTGGCATTGAGGA+TGG | - | chr3_2:78411026-78411045 | Msa0427740:intron | 40.0% |
| GCCATCATCGTCATAGTATT+TGG | + | chr3_2:78411069-78411088 | None:intergenic | 40.0% | |
| CATTTCCTGTGTCCTTGATT+CGG | - | chr3_2:78411135-78411154 | Msa0427740:CDS | 40.0% | |
| TTGTTGCCTTAATCTGAGTC+AGG | - | chr3_2:78411169-78411188 | Msa0427740:CDS | 40.0% | |
| ATAACAGCTGTGATAGGATC+TGG | - | chr3_2:78411220-78411239 | Msa0427740:CDS | 40.0% | |
| TAACAGCTGTGATAGGATCT+GGG | - | chr3_2:78411221-78411240 | Msa0427740:CDS | 40.0% | |
| CAGACATAGAAACTTGGGAT+AGG | + | chr3_2:78411527-78411546 | None:intergenic | 40.0% | |
| ! | TTATAACGTGTTTTGCAGGC+GGG | - | chr3_2:78411644-78411663 | Msa0427740:intron | 40.0% |
| CTTAACTCACATCATGCTCA+TGG | + | chr3_2:78411746-78411765 | None:intergenic | 40.0% | |
| CATGAGCATGATGTGAGTTA+AGG | - | chr3_2:78411744-78411763 | Msa0427740:intron | 40.0% | |
| !! | GTCATTTTATGTGGAGTCCA+CGG | + | chr3_2:78411974-78411993 | None:intergenic | 40.0% |
| CAAGTTACAACCTAGTGGTT+TGG | + | chr3_2:78412004-78412023 | None:intergenic | 40.0% | |
| ! | GGTTGTAACTTGTAACAACG+AGG | - | chr3_2:78412012-78412031 | Msa0427740:intron | 40.0% |
| !! | TAGTGTTAACTTGTGCCCTA+AGG | - | chr3_2:78412069-78412088 | Msa0427740:intron | 40.0% |
| !! | AGTGTTAACTTGTGCCCTAA+GGG | - | chr3_2:78412070-78412089 | Msa0427740:intron | 40.0% |
| GTTTCTTAACATGTGCCCTT+AGG | + | chr3_2:78412088-78412107 | None:intergenic | 40.0% | |
| !! | AATGTTAACTTGTGCCCTCA+AGG | + | chr3_2:78412228-78412247 | None:intergenic | 40.0% |
| CTGTAAATGGATGCTCACAT+TGG | + | chr3_2:78412397-78412416 | None:intergenic | 40.0% | |
| !!! | ATCAGCTGATTTTGGTTGAC+AGG | - | chr3_2:78412646-78412665 | Msa0427740:CDS | 40.0% |
| !!! | TCAGCTGATTTTGGTTGACA+GGG | - | chr3_2:78412647-78412666 | Msa0427740:CDS | 40.0% |
| TTATGTGTCCATACCTCTGA+TGG | - | chr3_2:78412684-78412703 | Msa0427740:CDS | 40.0% | |
| CGCCAAAAGCTATCATGTAT+GGG | + | chr3_2:78412737-78412756 | None:intergenic | 40.0% | |
| ACGCCAAAAGCTATCATGTA+TGG | + | chr3_2:78412738-78412757 | None:intergenic | 40.0% | |
| ! | ATACATGATAGCTTTTGGCG+TGG | - | chr3_2:78412737-78412756 | Msa0427740:intron | 40.0% |
| CTTGGAATTTCCAAAGTTGC+AGG | - | chr3_2:78412861-78412880 | Msa0427740:CDS | 40.0% | |
| !! | GAAAACCCCCCATACTTTTT+GGG | + | chr3_2:78413221-78413240 | None:intergenic | 40.0% |
| ! | AAAGGTGTACCTGAATTTCC+AGG | + | chr3_2:78413291-78413310 | None:intergenic | 40.0% |
| AAAACCTTTAGCATGTGAGG+GGG | + | chr3_2:78413467-78413486 | None:intergenic | 40.0% | |
| ATCAAATCTCCACCATCAGA+AGG | - | chr3_2:78413861-78413880 | Msa0427740:intron | 40.0% | |
| !! | ATTGCTTTTCCTTCTGATGG+TGG | + | chr3_2:78413873-78413892 | None:intergenic | 40.0% |
| ACACTTGGTATGCTCCAAAA+AGG | + | chr3_2:78414067-78414086 | None:intergenic | 40.0% | |
| TTTCTCGACGAAGGCAAATA+GGG | + | chr3_2:78414099-78414118 | None:intergenic | 40.0% | |
| AATCAACATTGCGATGAGAG+TGG | + | chr3_2:78414240-78414259 | None:intergenic | 40.0% | |
| CCCAAAACGTCGTTGAAAAA+TGG | + | chr3_2:78414263-78414282 | None:intergenic | 40.0% | |
| TGTACGATATACATCTCCAC+AGG | + | chr3_2:78414329-78414348 | None:intergenic | 40.0% | |
| TGAAGATCCCAAAATGGAGT+AGG | - | chr3_2:78414351-78414370 | Msa0427740:intron | 40.0% | |
| ! | TCCACTTCCTACTCCATTTT+GGG | + | chr3_2:78414361-78414380 | None:intergenic | 40.0% |
| ! | ATCCACTTCCTACTCCATTT+TGG | + | chr3_2:78414362-78414381 | None:intergenic | 40.0% |
| !! | GAGTAGGAAGTGGATTATTC+TGG | - | chr3_2:78414367-78414386 | Msa0427740:intron | 40.0% |
| CTGCCTCATTGTATCTATTG+TGG | - | chr3_2:78414406-78414425 | Msa0427740:intron | 40.0% | |
| CAGCCACAATAGATACAATG+AGG | + | chr3_2:78414412-78414431 | None:intergenic | 40.0% | |
| CTCATTGTATCTATTGTGGC+TGG | - | chr3_2:78414410-78414429 | Msa0427740:intron | 40.0% | |
| GTTTCTTACATTCCAGAAGG+AGG | + | chr3_2:78414523-78414542 | None:intergenic | 40.0% | |
| ATGGTTGTAACGGTCTTCTT+GGG | - | chr3_2:78414557-78414576 | Msa0427740:intron | 40.0% | |
| CTTCGTGGTCTATCTTAATG+GGG | - | chr3_2:78414783-78414802 | Msa0427740:five_prime_UTR | 40.0% | |
| TCTATCTTAATGGGGTCATG+TGG | - | chr3_2:78414791-78414810 | Msa0427740:five_prime_UTR | 40.0% | |
| TTTGAACTACGTGTAAGTGG+AGG | + | chr3_2:78414826-78414845 | None:intergenic | 40.0% | |
| CAAAATCTACGTACTTCTGC+AGG | - | chr3_2:78414842-78414861 | Msa0427740:five_prime_UTR | 40.0% | |
| ! | GGAAATATTTGGAGCCTTGA+TGG | - | chr3_2:78414863-78414882 | Msa0427740:five_prime_UTR | 40.0% |
| ! | GCACATTTTCGTTAACTGCC+AGG | - | chr3_2:78409456-78409475 | Msa0427740:CDS | 45.0% |
| AAAACAGAGTGTGTGGTACC+TGG | + | chr3_2:78409477-78409496 | None:intergenic | 45.0% | |
| AAACACGACACCAATTACCC+AGG | + | chr3_2:78409676-78409695 | None:intergenic | 45.0% | |
| ! | GAAGGTACAAATTGCGGCTT+TGG | - | chr3_2:78409892-78409911 | Msa0427740:CDS | 45.0% |
| TTGGATTGCCGCATGTCTAA+AGG | - | chr3_2:78409911-78409930 | Msa0427740:CDS | 45.0% | |
| !!! | GGTCAGTTGGGTTTTGAAAC+AGG | - | chr3_2:78410086-78410105 | Msa0427740:intron | 45.0% |
| CATGGAGGGATACATACAAC+AGG | - | chr3_2:78410422-78410441 | Msa0427740:intron | 45.0% | |
| ! | TTCTTGCAGAAAGTGTGTCC+TGG | - | chr3_2:78410447-78410466 | Msa0427740:intron | 45.0% |
| ! | TCTTGCAGAAAGTGTGTCCT+GGG | - | chr3_2:78410448-78410467 | Msa0427740:intron | 45.0% |
| TCCTGGGGTCAACATTTATC+CGG | - | chr3_2:78410464-78410483 | Msa0427740:intron | 45.0% | |
| AATCTGGGTCCACTCACATT+GGG | + | chr3_2:78410541-78410560 | None:intergenic | 45.0% | |
| AAATCTGGGTCCACTCACAT+TGG | + | chr3_2:78410542-78410561 | None:intergenic | 45.0% | |
| CGGTTATCGGGTAAAATGAG+AGG | + | chr3_2:78410787-78410806 | None:intergenic | 45.0% | |
| CAATATCTCCACGGTAGCTA+AGG | + | chr3_2:78411013-78411032 | None:intergenic | 45.0% | |
| AGCTACCGTGGAGATATTGT+TGG | - | chr3_2:78411014-78411033 | Msa0427740:intron | 45.0% | |
| ! | ACGATGATGGCCGTGTTAAA+CGG | - | chr3_2:78411078-78411097 | Msa0427740:CDS | 45.0% |
| TATCACCGAATCAAGGACAC+AGG | + | chr3_2:78411143-78411162 | None:intergenic | 45.0% | |
| ACGGTTCCTGACTCAGATTA+AGG | + | chr3_2:78411178-78411197 | None:intergenic | 45.0% | |
| AATCTGAGTCAGGAACCGTT+TGG | - | chr3_2:78411179-78411198 | Msa0427740:CDS | 45.0% | |
| AACAGCTGTGATAGGATCTG+GGG | - | chr3_2:78411222-78411241 | Msa0427740:CDS | 45.0% | |
| ! | CTCGCTGATTGTTATCGTTG+TGG | - | chr3_2:78411343-78411362 | Msa0427740:intron | 45.0% |
| GGCCCAGTGTTAAGATTTGT+GGG | - | chr3_2:78411665-78411684 | Msa0427740:intron | 45.0% | |
| GCGTTTAATTGGGCATGTGT+TGG | + | chr3_2:78411901-78411920 | None:intergenic | 45.0% | |
| !! | GGCTGTGAGGTCATTTTATG+TGG | + | chr3_2:78411983-78412002 | None:intergenic | 45.0% |
| TACCACACAACTGACAAACG+TGG | - | chr3_2:78412518-78412537 | Msa0427740:CDS | 45.0% | |
| ! | CGTCTTTTCCATCAGAGGTA+TGG | + | chr3_2:78412695-78412714 | None:intergenic | 45.0% |
| ! | ACATGCGTCTTTTCCATCAG+AGG | + | chr3_2:78412700-78412719 | None:intergenic | 45.0% |
| TCCACAATTGCTCTTGCTCT+TGG | - | chr3_2:78412843-78412862 | Msa0427740:CDS | 45.0% | |
| TCCAAGAGCAAGAGCAATTG+TGG | + | chr3_2:78412847-78412866 | None:intergenic | 45.0% | |
| ! | GGAAAACCCCCCATACTTTT+TGG | + | chr3_2:78413222-78413241 | None:intergenic | 45.0% |
| ! | AAAGTATGGGGGGTTTTCCA+AGG | - | chr3_2:78413223-78413242 | Msa0427740:intron | 45.0% |
| !!! | TGCATGGGATATGCTGCTTT+TGG | - | chr3_2:78413951-78413970 | Msa0427740:intron | 45.0% |
| TTCTCGACGAAGGCAAATAG+GGG | + | chr3_2:78414098-78414117 | None:intergenic | 45.0% | |
| CTTTCTCGACGAAGGCAAAT+AGG | + | chr3_2:78414100-78414119 | None:intergenic | 45.0% | |
| ATTTGCCTTCGTCGAGAAAG+AGG | - | chr3_2:78414100-78414119 | Msa0427740:intron | 45.0% | |
| !!! | AACGACGTTTTGGGAGTGAT+TGG | - | chr3_2:78414269-78414288 | Msa0427740:intron | 45.0% |
| !!! | ACGACGTTTTGGGAGTGATT+GGG | - | chr3_2:78414270-78414289 | Msa0427740:intron | 45.0% |
| !!! | TGATTGGGGCATTGGGATTT+TGG | - | chr3_2:78414285-78414304 | Msa0427740:intron | 45.0% |
| TCCCAAAATGGAGTAGGAAG+TGG | - | chr3_2:78414357-78414376 | Msa0427740:intron | 45.0% | |
| !! | GTATCTATTGTGGCTGGTCT+TGG | - | chr3_2:78414416-78414435 | Msa0427740:intron | 45.0% |
| GAAACTTATGTGGGAGGTGA+TGG | - | chr3_2:78414538-78414557 | Msa0427740:intron | 45.0% | |
| GATGGTTGTAACGGTCTTCT+TGG | - | chr3_2:78414556-78414575 | Msa0427740:intron | 45.0% | |
| !! | AATAATAAATAAAAATTGAA+GGG | + | chr3_2:78409168-78409187 | None:intergenic | 5.0% |
| !! | TAATAATAAATAAAAATTGA+AGG | + | chr3_2:78409169-78409188 | None:intergenic | 5.0% |
| !! | AAATATAGAAAAAAAATTAT+TGG | + | chr3_2:78412189-78412208 | None:intergenic | 5.0% |
| ! | CTTGCAGAAAGTGTGTCCTG+GGG | - | chr3_2:78410449-78410468 | Msa0427740:intron | 50.0% |
| ! | ACGGTAGCTAAGGTTGGTTC+CGG | + | chr3_2:78411003-78411022 | None:intergenic | 50.0% |
| ATCTCCACGGTAGCTAAGGT+TGG | + | chr3_2:78411009-78411028 | None:intergenic | 50.0% | |
| ! | GTGGGAGCATGTAGTCCAAA+CGG | + | chr3_2:78411197-78411216 | None:intergenic | 50.0% |
| CTGAGCTATAGACCAGGCTA+AGG | + | chr3_2:78411254-78411273 | None:intergenic | 50.0% | |
| AGCCTGGTCTATAGCTCAGA+TGG | - | chr3_2:78411255-78411274 | Msa0427740:intron | 50.0% | |
| GCCTGGTCTATAGCTCAGAT+GGG | - | chr3_2:78411256-78411275 | Msa0427740:intron | 50.0% | |
| ACCCATCTGAGCTATAGACC+AGG | + | chr3_2:78411260-78411279 | None:intergenic | 50.0% | |
| GGTCTATAGCTCAGATGGGT+TGG | - | chr3_2:78411260-78411279 | Msa0427740:intron | 50.0% | |
| CGTTGTGGTGACACCGAATT+TGG | - | chr3_2:78411358-78411377 | Msa0427740:intron | 50.0% | |
| GGGCCCAGTGTTAAGATTTG+TGG | - | chr3_2:78411664-78411683 | Msa0427740:intron | 50.0% | |
| CAAACAAACACACGCACACG+AGG | - | chr3_2:78411920-78411939 | Msa0427740:intron | 50.0% | |
| ! | AACCTAGTGGTTTGGCTGTG+AGG | + | chr3_2:78411996-78412015 | None:intergenic | 50.0% |
| ACTGTTATGGGTAGCCTCAC+AGG | - | chr3_2:78413169-78413188 | Msa0427740:intron | 50.0% | |
| AGGCGATGTTTCCAAGACCT+TGG | + | chr3_2:78413243-78413262 | None:intergenic | 50.0% | |
| CATACCCCCTCACATGCTAA+AGG | - | chr3_2:78413460-78413479 | Msa0427740:intron | 50.0% | |
| TTATCTGCTCTGTGGCTGCA+TGG | - | chr3_2:78413935-78413954 | Msa0427740:intron | 50.0% | |
| TATCTGCTCTGTGGCTGCAT+GGG | - | chr3_2:78413936-78413955 | Msa0427740:intron | 50.0% | |
| !! | CTTTTGGAGACAATGCGCCA+GGG | - | chr3_2:78413967-78413986 | Msa0427740:intron | 50.0% |
| ATAGGGGTTGGGCATACACT+TGG | + | chr3_2:78414082-78414101 | None:intergenic | 50.0% | |
| GACGAAGGCAAATAGGGGTT+GGG | + | chr3_2:78414093-78414112 | None:intergenic | 50.0% | |
| GACTGTAGACTGGCAAACCA+GGG | + | chr3_2:78414172-78414191 | None:intergenic | 50.0% | |
| TGACTGTAGACTGGCAAACC+AGG | + | chr3_2:78414173-78414192 | None:intergenic | 50.0% | |
| !!! | CGACGTTTTGGGAGTGATTG+GGG | - | chr3_2:78414271-78414290 | Msa0427740:intron | 50.0% |
| TTTGGGAGTGATTGGGGCAT+TGG | - | chr3_2:78414277-78414296 | Msa0427740:intron | 50.0% | |
| ! | TTGGGAGTGATTGGGGCATT+GGG | - | chr3_2:78414278-78414297 | Msa0427740:intron | 50.0% |
| ! | GTGGGAGGTGATGGTTGTAA+CGG | - | chr3_2:78414547-78414566 | Msa0427740:intron | 50.0% |
| CTGCCTAGTGGTGAGGTAGT+CGG | - | chr3_2:78409078-78409097 | Msa0427740:three_prime_UTR | 55.0% | |
| GCCGGATAAATGTTGACCCC+AGG | + | chr3_2:78410468-78410487 | None:intergenic | 55.0% | |
| GGAACCAACCTTAGCTACCG+TGG | - | chr3_2:78411002-78411021 | Msa0427740:intron | 55.0% | |
| GATGGCCGTGTTAAACGGAC+AGG | - | chr3_2:78411083-78411102 | Msa0427740:CDS | 55.0% | |
| !! | GCTCAGATGGGTTGGATTGC+TGG | - | chr3_2:78411268-78411287 | Msa0427740:intron | 55.0% |
| !! | ATGGGTTGGATTGCTGGTCC+TGG | - | chr3_2:78411274-78411293 | Msa0427740:intron | 55.0% |
| ! | TTGGGCATGTGTTGGCCACT+TGG | + | chr3_2:78411893-78411912 | None:intergenic | 55.0% |
| ACAAACACACGCACACGAGG+AGG | - | chr3_2:78411923-78411942 | Msa0427740:intron | 55.0% | |
| CAAACACACGCACACGAGGA+GGG | - | chr3_2:78411924-78411943 | Msa0427740:intron | 55.0% | |
| AAACACACGCACACGAGGAG+GGG | - | chr3_2:78411925-78411944 | Msa0427740:intron | 55.0% | |
| GACCTCACAGCCAAACCACT+AGG | - | chr3_2:78411991-78412010 | Msa0427740:intron | 55.0% | |
| CGCCACGTTTGTCAGTTGTG+TGG | + | chr3_2:78412523-78412542 | None:intergenic | 55.0% | |
| AGCCTCACAGGAGTAAGCGT+CGG | - | chr3_2:78413181-78413200 | Msa0427740:intron | 55.0% | |
| TTCCGACGCTTACTCCTGTG+AGG | + | chr3_2:78413186-78413205 | None:intergenic | 55.0% | |
| TGACCCCGGCCCAAAAAGTA+TGG | - | chr3_2:78413209-78413228 | Msa0427740:intron | 55.0% | |
| ! | GACCCCGGCCCAAAAAGTAT+GGG | - | chr3_2:78413210-78413229 | Msa0427740:intron | 55.0% |
| ! | ACCCCGGCCCAAAAAGTATG+GGG | - | chr3_2:78413211-78413230 | Msa0427740:intron | 55.0% |
| !! | ACCCCCCATACTTTTTGGGC+CGG | + | chr3_2:78413217-78413236 | None:intergenic | 55.0% |
| ! | TGGGGGGTTTTCCAAGGTCT+TGG | - | chr3_2:78413229-78413248 | Msa0427740:intron | 55.0% |
| !! | GCTTTTGGAGACAATGCGCC+AGG | - | chr3_2:78413966-78413985 | Msa0427740:intron | 55.0% |
| CGACGAAGGCAAATAGGGGT+TGG | + | chr3_2:78414094-78414113 | None:intergenic | 55.0% | |
| TGCTGCCTCTTTCTCGACGA+AGG | + | chr3_2:78414108-78414127 | None:intergenic | 55.0% | |
| !! | TGTGGCTGGTCTTGGCTCAT+TGG | - | chr3_2:78414424-78414443 | Msa0427740:intron | 55.0% |
| !! | GCTGGTCTTGGCTCATTGGT+CGG | - | chr3_2:78414428-78414447 | Msa0427740:intron | 55.0% |
| ! | TTGGCTCATTGGTCGGTGTC+TGG | - | chr3_2:78414435-78414454 | Msa0427740:five_prime_UTR | 55.0% |
| CGTGTAAGTGGAGGCAGACA+TGG | + | chr3_2:78414817-78414836 | None:intergenic | 55.0% | |
| AGCGTGAATTGCAGCGGCAG+TGG | - | chr3_2:78409010-78409029 | Msa0427740:three_prime_UTR | 60.0% | |
| GTGGAGTCGGCGGTCCAATT+AGG | + | chr3_2:78409051-78409070 | None:intergenic | 60.0% | |
| !! | ATTGGACCGCCGACTCCACA+AGG | - | chr3_2:78409052-78409071 | Msa0427740:three_prime_UTR | 60.0% |
| ! | TCGCCGACTACCTCACCACT+AGG | + | chr3_2:78409084-78409103 | None:intergenic | 60.0% |
| AACACACGCACACGAGGAGG+GGG | - | chr3_2:78411926-78411945 | Msa0427740:intron | 60.0% | |
| GGAGTCCACGGTTTGAACCC+AGG | + | chr3_2:78411962-78411981 | None:intergenic | 60.0% | |
| !! | AAGCGTCGGAACAGTGACCC+CGG | - | chr3_2:78413195-78413214 | Msa0427740:intron | 60.0% |
| !! | CCCCCATACTTTTTGGGCCG+GGG | + | chr3_2:78413215-78413234 | None:intergenic | 60.0% |
| ! | CCCCGGCCCAAAAAGTATGG+GGG | - | chr3_2:78413212-78413231 | Msa0427740:intron | 60.0% |
| !! | CCCCCCATACTTTTTGGGCC+GGG | + | chr3_2:78413216-78413235 | None:intergenic | 60.0% |
| ! | CCCGGCCCAAAAAGTATGGG+GGG | - | chr3_2:78413213-78413232 | Msa0427740:intron | 60.0% |
| AGGCAGCCGCCTTGTGGAGT+CGG | + | chr3_2:78409064-78409083 | None:intergenic | 65.0% | |
| TCCACAAGGCGGCTGCCTAG+TGG | - | chr3_2:78409066-78409085 | Msa0427740:three_prime_UTR | 65.0% | |
| ACCACTAGGCAGCCGCCTTG+TGG | + | chr3_2:78409070-78409089 | None:intergenic | 65.0% | |
| AAGGCGGCTGCCTAGTGGTG+AGG | - | chr3_2:78409071-78409090 | Msa0427740:three_prime_UTR | 65.0% | |
| ! | CTGGGGTGCTCTCCTTAGCC+TGG | - | chr3_2:78411239-78411258 | Msa0427740:intron | 65.0% |
| GCACACGAGGAGGGGGAATG+TGG | - | chr3_2:78411933-78411952 | Msa0427740:intron | 65.0% | |
| CACGAGGAGGGGGAATGTGG+TGG | - | chr3_2:78411936-78411955 | Msa0427740:intron | 65.0% | |
| GAGGGGGAATGTGGTGGCCT+GGG | - | chr3_2:78411942-78411961 | Msa0427740:intron | 65.0% | |
| GGTGGCCTGGGTTCAAACCG+TGG | - | chr3_2:78411954-78411973 | Msa0427740:intron | 65.0% | |
| AATCCGGCGAGCAGGTTCCC+TGG | + | chr3_2:78413987-78414006 | None:intergenic | 65.0% | |
| !! | GGACCGCCGACTCCACAAGG+CGG | - | chr3_2:78409055-78409074 | Msa0427740:three_prime_UTR | 70.0% |
| CAGCCGCCTTGTGGAGTCGG+CGG | + | chr3_2:78409061-78409080 | None:intergenic | 70.0% | |
| GGAGGGGGAATGTGGTGGCC+TGG | - | chr3_2:78411941-78411960 | Msa0427740:intron | 70.0% | |
| GCGCCAGGGAACCTGCTCGC+CGG | - | chr3_2:78413981-78414000 | Msa0427740:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 78409008 | 78414901 | 78409008 | ID=Msa0427740;Name=Msa0427740 |
| chr3_2 | mRNA | 78409008 | 78414901 | 78409008 | ID=Msa0427740-mRNA-1;Parent=Msa0427740;Name=Msa0427740-mRNA-1;_AED=0.29;_eAED=0.29;_QI=237|1|1|1|0.85|0.75|8|402|482 |
| chr3_2 | exon | 78409008 | 78410054 | 78409008 | ID=Msa0427740-mRNA-1:exon:20788;Parent=Msa0427740-mRNA-1 |
| chr3_2 | exon | 78410609 | 78410748 | 78410609 | ID=Msa0427740-mRNA-1:exon:20787;Parent=Msa0427740-mRNA-1 |
| chr3_2 | exon | 78411027 | 78411241 | 78411027 | ID=Msa0427740-mRNA-1:exon:20786;Parent=Msa0427740-mRNA-1 |
| chr3_2 | exon | 78412154 | 78412247 | 78412154 | ID=Msa0427740-mRNA-1:exon:20785;Parent=Msa0427740-mRNA-1 |
| chr3_2 | exon | 78412485 | 78412718 | 78412485 | ID=Msa0427740-mRNA-1:exon:20784;Parent=Msa0427740-mRNA-1 |
| chr3_2 | exon | 78412805 | 78412939 | 78412805 | ID=Msa0427740-mRNA-1:exon:20783;Parent=Msa0427740-mRNA-1 |
| chr3_2 | exon | 78414432 | 78414526 | 78414432 | ID=Msa0427740-mRNA-1:exon:20782;Parent=Msa0427740-mRNA-1 |
| chr3_2 | exon | 78414774 | 78414901 | 78414774 | ID=Msa0427740-mRNA-1:exon:20781;Parent=Msa0427740-mRNA-1 |
| chr3_2 | five_prime_UTR | 78414774 | 78414901 | 78414774 | ID=Msa0427740-mRNA-1:five_prime_utr;Parent=Msa0427740-mRNA-1 |
| chr3_2 | five_prime_UTR | 78414432 | 78414526 | 78414432 | ID=Msa0427740-mRNA-1:five_prime_utr;Parent=Msa0427740-mRNA-1 |
| chr3_2 | five_prime_UTR | 78412926 | 78412939 | 78412926 | ID=Msa0427740-mRNA-1:five_prime_utr;Parent=Msa0427740-mRNA-1 |
| chr3_2 | CDS | 78412805 | 78412925 | 78412805 | ID=Msa0427740-mRNA-1:cds;Parent=Msa0427740-mRNA-1 |
| chr3_2 | CDS | 78412485 | 78412718 | 78412485 | ID=Msa0427740-mRNA-1:cds;Parent=Msa0427740-mRNA-1 |
| chr3_2 | CDS | 78412154 | 78412247 | 78412154 | ID=Msa0427740-mRNA-1:cds;Parent=Msa0427740-mRNA-1 |
| chr3_2 | CDS | 78411027 | 78411241 | 78411027 | ID=Msa0427740-mRNA-1:cds;Parent=Msa0427740-mRNA-1 |
| chr3_2 | CDS | 78410609 | 78410748 | 78410609 | ID=Msa0427740-mRNA-1:cds;Parent=Msa0427740-mRNA-1 |
| chr3_2 | CDS | 78409410 | 78410054 | 78409410 | ID=Msa0427740-mRNA-1:cds;Parent=Msa0427740-mRNA-1 |
| chr3_2 | three_prime_UTR | 78409008 | 78409409 | 78409008 | ID=Msa0427740-mRNA-1:three_prime_utr;Parent=Msa0427740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
