AlfalfaGEDB | Msa0762890

M. sativa cultivar zhongmu-4 / Msa0762890

KEGG: -
GO: GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010035 GO:0010193 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046677 GO:0046777 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700
PFAM: PF01657.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0762890	sp\|Q9CAL3\|CRK2_ARATH	64.610	616	188	6	2	591	38	649	0.0	771

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0762890	G7K057	89.379	612	29	3	1	589	37	635	0.0	1079

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0054250	Msa0762890	0.802254	6.120672e-49	-8.615850e-47
Msa0054260	Msa0762890	0.809833	1.556038e-50	-8.615850e-47
Msa0100070	Msa0762890	0.822402	2.414279e-53	-8.615850e-47
Msa0100080	Msa0762890	0.827720	1.338614e-54	-8.615850e-47
Msa0100090	Msa0762890	0.820628	6.203636e-53	-8.615850e-47
Msa0141230	Msa0762890	0.815154	1.068981e-51	-8.615850e-47
Msa0212310	Msa0762890	0.817010	4.116109e-52	-8.615850e-47
Msa0317510	Msa0762890	0.801305	9.585787e-49	-8.615850e-47
Msa0390770	Msa0762890	0.801571	8.454508e-49	-8.615850e-47
Msa0568440	Msa0762890	0.802881	4.545956e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0762890	MtrunA17_Chr5g0413171	89.806	412	19	2	201	589	1	412	0.0	712
Msa0762890	MtrunA17_Chr4g0058891	37.961	569	275	12	18	557	53	572	4.04e-121	372
Msa0762890	MtrunA17_Chr3g0109431	37.500	584	317	14	11	557	45	617	4.18e-115	356
Msa0762890	MtrunA17_Chr7g0226891	49.857	349	139	6	238	562	4	340	8.27e-112	339
Msa0762890	MtrunA17_Chr3g0109461	38.517	553	286	16	48	557	89	630	9.36e-112	348
Msa0762890	MtrunA17_Chr3g0109411	37.245	588	328	14	4	557	34	614	2.11e-110	344
Msa0762890	MtrunA17_Chr1g0206361	35.008	597	329	14	11	556	43	631	2.90e-106	334
Msa0762890	MtrunA17_Chr1g0205771	34.291	557	317	11	37	553	81	628	3.31e-98	313
Msa0762890	MtrunA17_Chr8g0354271	35.192	574	314	15	27	555	63	623	4.98e-97	310
Msa0762890	MtrunA17_Chr8g0354281	33.394	551	325	8	42	555	77	622	2.15e-96	308

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0762890	AT1G70520.1	64.610	616	188	6	2	591	38	649	0.0	771
Msa0762890	AT1G70530.1	40.397	604	312	12	3	570	30	621	1.70e-148	443
Msa0762890	AT5G40380.1	41.594	577	287	12	15	561	53	609	4.25e-147	439
Msa0762890	AT4G28670.1	40.532	602	301	9	3	559	35	624	1.32e-143	429
Msa0762890	AT1G70530.2	43.943	487	236	7	13	466	42	524	1.56e-135	406
Msa0762890	AT5G40380.2	44.606	482	219	11	15	466	53	516	4.70e-132	397
Msa0762890	AT1G70530.3	41.685	451	226	7	13	430	42	488	1.02e-112	345
Msa0762890	AT5G40380.3	42.152	446	210	11	15	430	53	480	2.14e-111	342
Msa0762890	AT4G23230.1	35.628	581	306	14	32	559	62	627	2.55e-96	307
Msa0762890	AT4G23160.1	35.105	621	323	16	32	591	81	682	2.70e-91	296

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Find 107 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCAGCAACATCCTAT+TGG	0.407864	5_2:+21457144	Msa0762890:CDS
AAAATAAAGGCTATGCCAGA+GGG	0.604191	5_2:+21455773	Msa0762890:CDS
AAACTAGGGCATGGAGGATT+CGG	0.417682	5_2:+21456549	Msa0762890:CDS
AAAGAAGATAGAGCTGTGTG+TGG	0.636944	5_2:+21455673	Msa0762890:CDS
AAATGAATCTCTTTATGTTC+TGG	0.449285	5_2:+21455819	Msa0762890:CDS
AAATGCGACCGGAGTTATAA+GGG	0.481982	5_2:-21455591	None:intergenic
AACAAGATGCTCTTCATTCT+TGG	0.256604	5_2:-21458177	Msa0762900:three_prime_UTR
AACACAACTAAGAAGAGCTC+GGG	0.553577	5_2:+21455697	Msa0762890:CDS
AACATAAAGAGATTCATTTG+CGG	0.497153	5_2:-21455815	None:intergenic
AACGAAGTCGACATAATTAG+CGG	0.571836	5_2:+21456740	Msa0762890:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCCATAGTTGCAACAAAATT+CGG	-	chr5_2:21455412-21455431	None:intergenic	30.0%
TTAACAAGGAAGTGGAAAAT+GGG	+	chr5_2:21455986-21456005	Msa0762890:CDS	30.0%
GATATAAGCTCCAAAAGTTA+CGG	-	chr5_2:21456180-21456199	None:intergenic	30.0%
CTTATCTTGCAAACAAATTG+TGG	+	chr5_2:21456352-21456371	Msa0762890:intron	30.0%
GAACTTCAAGTATTCTACAT+TGG	+	chr5_2:21456494-21456513	Msa0762890:CDS	30.0%
TGCTTGATATGTAAAACTTG+TGG	-	chr5_2:21456619-21456638	None:intergenic	30.0%
TATCAAGCAGATTAACAGTT+TGG	+	chr5_2:21456630-21456649	Msa0762890:intron	30.0%
AAACTCATTAACCACGAATT+TGG	+	chr5_2:21457398-21457417	Msa0762890:intron	30.0%
ACATGGTTAATGAGTATATG+AGG	-	chr5_2:21457491-21457510	None:intergenic	30.0%
AGTTAAGTACTCTATATTCC+TGG	+	chr5_2:21457718-21457737	Msa0762890:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	21455318	21458343	21455318	ID=Msa0762890;Name=Msa0762890
chr5_2	mRNA	21455318	21458343	21455318	ID=Msa0762890-mRNA-1;Parent=Msa0762890;Name=Msa0762890-mRNA-1;_AED=0.05;_eAED=0.05;_QI=43\|0.5\|0.57\|1\|1\|1\|7\|12\|591
chr5_2	exon	21455318	21456018	21455318	ID=Msa0762890-mRNA-1:exon:8919;Parent=Msa0762890-mRNA-1
chr5_2	exon	21456120	21456233	21456120	ID=Msa0762890-mRNA-1:exon:8920;Parent=Msa0762890-mRNA-1
chr5_2	exon	21456445	21456575	21456445	ID=Msa0762890-mRNA-1:exon:8921;Parent=Msa0762890-mRNA-1
chr5_2	exon	21456662	21456872	21456662	ID=Msa0762890-mRNA-1:exon:8922;Parent=Msa0762890-mRNA-1
chr5_2	exon	21457086	21457260	21457086	ID=Msa0762890-mRNA-1:exon:8923;Parent=Msa0762890-mRNA-1
chr5_2	exon	21457749	21457899	21457749	ID=Msa0762890-mRNA-1:exon:8924;Parent=Msa0762890-mRNA-1
chr5_2	exon	21457996	21458343	21457996	ID=Msa0762890-mRNA-1:exon:8925;Parent=Msa0762890-mRNA-1
chr5_2	five_prime_UTR	21455318	21455360	21455318	ID=Msa0762890-mRNA-1:five_prime_utr;Parent=Msa0762890-mRNA-1
chr5_2	CDS	21455361	21456018	21455361	ID=Msa0762890-mRNA-1:cds;Parent=Msa0762890-mRNA-1
chr5_2	CDS	21456120	21456233	21456120	ID=Msa0762890-mRNA-1:cds;Parent=Msa0762890-mRNA-1
chr5_2	CDS	21456445	21456575	21456445	ID=Msa0762890-mRNA-1:cds;Parent=Msa0762890-mRNA-1
chr5_2	CDS	21456662	21456872	21456662	ID=Msa0762890-mRNA-1:cds;Parent=Msa0762890-mRNA-1
chr5_2	CDS	21457086	21457260	21457086	ID=Msa0762890-mRNA-1:cds;Parent=Msa0762890-mRNA-1
chr5_2	CDS	21457749	21457899	21457749	ID=Msa0762890-mRNA-1:cds;Parent=Msa0762890-mRNA-1
chr5_2	CDS	21457996	21458331	21457996	ID=Msa0762890-mRNA-1:cds;Parent=Msa0762890-mRNA-1
chr5_2	three_prime_UTR	21458332	21458343	21458332	ID=Msa0762890-mRNA-1:three_prime_utr;Parent=Msa0762890-mRNA-1

Gene Sequence

>Msa0762890

ATGATAATATGTGGCCATCAAGTAGAGCATAACACAAGCATCTTTGTTCCGAATTTTGTTGCAACTATGGAGAAGATTAGCGAGCAGATGCGCAGTACCGGCTTTGGCACAGCAGTTACTGGGACAGGACCTGATGATAACTATGGCCTAGCACAATGCTATGGAGATCTTTCATTACTTGACTGTGTGTTGTGTTATGCTGAGGCGCGCACGGTTCTTCCTCAGTGCTTCCCTTATAACTCCGGTCGCATTTACCTTGATGGTTGCTTCATGAGGTCTGCGAATTATAGTTTTTTTAATGAGTATACAGGAAAAGAAGATAGAGCTGTGTGTGGGAACACAACTAAGAAGAGCTCGGGTTTTCAAGTAGCGGCGAAGGAGGCAGTGTTGAGAGCGGTTCGAGATGCACCGAAAAATAAAGGCTATGCCAGAGGGAAAGTAGTTGTATCAGGAACCGCAAATGAATCTCTTTATGTTCTGGCTGATTGTTGGAGAAGTTTGGATTCTAAGTCTTGCAAAGCCTGTCTCGAGCATGCGTCGTCTTCTATTTTGAGATGTCTGCCCTCATCAGAAGGACGGGCGCTCAACACCGGATGCTTCATGAGGTACTCAGACACTGACTTTCTTAACAAGGAAGTGGAAAATGGGAGATCAGGAGGTAATGTAGTAGTGATAGTCATTGCAGTAGTTAGTTCCATGATCGTTGCGGTGGTTGCCGTAACTTTTGGAGCTTATATCTGGAAACAGAGATACATTCAAAAGAAAAGAAGAGGATCAAATGATGCAGAAAAGTTAGCAAAGAGTTTAGAGCAAAAAAGCTTGAACTTCAAGTATTCTACATTGGAAAAAGCTACTGGATCTTTTAATGATAATAGCAAACTAGGGCATGGAGGATTCGGAACGGGAGTTCTACCTGATGGAAGAGAGATTGCTATAAAGAGGTTATATTTCAACAACAGACATAGAGCAGCAGATTTCTACAACGAAGTCGACATAATTAGCGGTGTCGAACACAAGAATCTAGTTAGACTATTAGGATGCAGTTGTTCAGGACCTGAAAGCCTTCTTGTATATGAATTTATGCCTAACAGAAGTCTTGATCGCTTCATTTTTGCTGAAGGATTAGTTTACCTGCATGAGAACTCCAAAATCAGAATAATTCATAGAGATATAAAAGCCAGCAACATCCTATTGGATTCAAAATTTCGAGCTAAAATTGCAGATTTTGGTTTGGCCAGGTCCTTTCAAGAAGACAAGAGCCACATAAGCACAGCTATTGCAGGAACTTTGGGGTATATGGCTCCAGAGTATCTAGCTCATGGTCAGTTAACAGAAAAGGCAGACGTATATAGTTTCGGAGTATTGCTGCTAGAGATAGTTACTGGAAGACAGAATAACAGGAGCAAAGCATCAGAATATTCAGACAGTTTAGTTATAGTGACGTGGAAGCATTTTCAGTCCGGGACTGCCGAACAGTTGTTCGATCCAAATATAGAGATGCACAACGACCGCAATAGCGATGTTAAGAATGAGATTTTAAGAGTGATTCACATAGGACTTCTATGCATCCAAGAGGTCGCTTCATTGCGACCAACTATGTCAAAGGCGTTACAGATGCTAACCAAGAATGAAGAGCATCTTGTTGCTCCGTCTAATCCACCTTTCTTAGATGAGAGTACCATGGAGCTCCATGACACAAGTGGCGACCCATTTTACCTCCTCAAAACAGATGATTCAGTTGCTACTATGTCAAATAGCTCTTTCTATCCCAGGTAA

Protein sequence

>Msa0762890

MIICGHQVEHNTSIFVPNFVATMEKISEQMRSTGFGTAVTGTGPDDNYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNSGRIYLDGCFMRSANYSFFNEYTGKEDRAVCGNTTKKSSGFQVAAKEAVLRAVRDAPKNKGYARGKVVVSGTANESLYVLADCWRSLDSKSCKACLEHASSSILRCLPSSEGRALNTGCFMRYSDTDFLNKEVENGRSGGNVVVIVIAVVSSMIVAVVAVTFGAYIWKQRYIQKKRRGSNDAEKLAKSLEQKSLNFKYSTLEKATGSFNDNSKLGHGGFGTGVLPDGREIAIKRLYFNNRHRAADFYNEVDIISGVEHKNLVRLLGCSCSGPESLLVYEFMPNRSLDRFIFAEGLVYLHENSKIRIIHRDIKASNILLDSKFRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLEIVTGRQNNRSKASEYSDSLVIVTWKHFQSGTAEQLFDPNIEMHNDRNSDVKNEILRVIHIGLLCIQEVASLRPTMSKALQMLTKNEEHLVAPSNPPFLDESTMELHDTSGDPFYLLKTDDSVATMSNSSFYPR*