Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768680 | sp|Q6DJI4|RM41A_XENLA | 44.595 | 74 | 40 | 1 | 3 | 76 | 1 | 73 | 1.78e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768680 | I3SQY2 | 98.913 | 92 | 0 | 1 | 1 | 91 | 1 | 92 | 3.63e-57 | 180 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0050930 | Msa0768680 | -0.807887 | 4.057159e-50 | -8.615850e-47 |
| Msa0768680 | Msa0768710 | 0.974517 | 2.693988e-138 | -8.615850e-47 |
| Msa0768680 | Msa0881210 | 0.840240 | 9.793089e-58 | -8.615850e-47 |
| Msa0768680 | Msa1132630 | 0.821505 | 3.896817e-53 | -8.615850e-47 |
| Msa0768680 | Msa1257800 | 0.808448 | 3.081993e-50 | -8.615850e-47 |
| Msa0768680 | Msa1264860 | 0.834857 | 2.350953e-56 | -8.615850e-47 |
| Msa0768680 | Msa1463650 | 0.838293 | 3.133682e-57 | -8.615850e-47 |
| Msa0532810 | Msa0768680 | 0.832108 | 1.140823e-55 | -8.615850e-47 |
| Msa0598830 | Msa0768680 | 0.803722 | 3.043176e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768680 | MtrunA17_Chr5g0419731 | 98.913 | 92 | 0 | 1 | 1 | 91 | 1 | 92 | 6.99e-61 | 180 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768680 | AT5G40080.1 | 76.404 | 89 | 21 | 0 | 4 | 92 | 6 | 94 | 1.61e-48 | 149 |
| Msa0768680 | AT5G39800.1 | 76.404 | 89 | 21 | 0 | 4 | 92 | 6 | 94 | 1.33e-42 | 134 |
| Msa0768680 | AT4G09012.1 | 77.551 | 49 | 11 | 0 | 1 | 49 | 75 | 123 | 4.76e-21 | 80.9 |
Find 57 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTCCAAACCACCAAATT+AGG | 0.137993 | 5_2:-35275570 | None:intergenic |
| GTATTCTAAACTACTGAATT+TGG | 0.198735 | 5_2:-35275390 | None:intergenic |
| AGCGCGGCGGCTGCGTTTCC+CGG | 0.206181 | 5_2:-35270325 | None:intergenic |
| CTCGGAGGTCTTCGCTTCTA+TGG | 0.237140 | 5_2:-35275346 | None:intergenic |
| TTATACAATTGCAATATTTC+CGG | 0.237506 | 5_2:-35270279 | None:intergenic |
| AAATCACCCCTCCCCTAATT+TGG | 0.269825 | 5_2:+35275557 | Msa0768680:three_prime_UTR |
| CCTCCCCTAATTTGGTGGTT+TGG | 0.284543 | 5_2:+35275565 | Msa0768680:three_prime_UTR |
| CATTCCAAACCACCAAATTA+GGG | 0.337320 | 5_2:-35275569 | None:intergenic |
| TTGTAACATGATGCATGATT+TGG | 0.354538 | 5_2:+35275497 | Msa0768680:three_prime_UTR |
| TGTGACAGTAAGATTATTCA+TGG | 0.377607 | 5_2:-35275436 | None:intergenic |
| AAACCTCGAGGAGCACGTTT+TGG | 0.384446 | 5_2:-35272310 | None:intergenic |
| TCGGAGGTCTTCGCTTCTAT+GGG | 0.390509 | 5_2:-35275345 | None:intergenic |
| CCTAATTTGGTGGTTTGGAA+TGG | 0.411161 | 5_2:+35275570 | Msa0768680:three_prime_UTR |
| CTTCGCTTCTATGGGGCATT+GGG | 0.411283 | 5_2:-35275337 | None:intergenic |
| GGGAAACGCAGCCGCCGCGC+TGG | 0.415231 | 5_2:+35270327 | Msa0768680:five_prime_UTR |
| TCTTCGCTTCTATGGGGCAT+TGG | 0.424619 | 5_2:-35275338 | None:intergenic |
| ATGGGGCATTGGGATACATA+TGG | 0.425726 | 5_2:-35275327 | None:intergenic |
| GTTGAGTTTCTTACAATTTG+TGG | 0.436027 | 5_2:-35270375 | None:intergenic |
| CAAATCAGGAACTACATAGT+TGG | 0.440803 | 5_2:-35274468 | None:intergenic |
| ACCTTAAAACCAGTCAAATC+AGG | 0.454783 | 5_2:-35274482 | None:intergenic |
| CATGCATCATGTTACAAATA+CGG | 0.458849 | 5_2:-35275491 | None:intergenic |
| CTCACAGAAGAAGATGCCTC+TGG | 0.465181 | 5_2:+35272222 | Msa0768680:intron |
| AAATCAGGAACTACATAGTT+GGG | 0.475474 | 5_2:-35274467 | None:intergenic |
| TCACCCCTCCCCTAATTTGG+TGG | 0.481329 | 5_2:+35275560 | Msa0768680:three_prime_UTR |
| TATGTAGTTCCTGATTTGAC+TGG | 0.484283 | 5_2:+35274473 | Msa0768680:CDS |
| ACTGGTTTCTTCACTCGCAA+AGG | 0.509036 | 5_2:+35272358 | Msa0768680:CDS |
| CTCTACTAAGATAAACGTGT+TGG | 0.513635 | 5_2:-35275638 | None:intergenic |
| TCACAGAAGAAGATGCCTCT+GGG | 0.518503 | 5_2:+35272223 | Msa0768680:intron |
| TCTACTAAGATAAACGTGTT+GGG | 0.526053 | 5_2:-35275637 | None:intergenic |
| AGGTGGGTATGTGGTGGTGA+AGG | 0.533305 | 5_2:+35274436 | Msa0768680:intron |
| TATTATTTCAGGTGGGTATG+TGG | 0.544556 | 5_2:+35274427 | Msa0768680:intron |
| TGTTGAACTTCGACGTATGT+CGG | 0.560696 | 5_2:-35275701 | None:intergenic |
| GACCTCCGAGGCTTCTCAAA+CGG | 0.560951 | 5_2:+35275359 | Msa0768680:CDS |
| TGATGATCTACTACGATGGT+GGG | 0.564375 | 5_2:-35270249 | None:intergenic |
| GGAAAGAACTGCAAGCCCAC+TGG | 0.564710 | 5_2:+35272340 | Msa0768680:CDS |
| GAAAGAATCAAACACTCGCC+GGG | 0.566923 | 5_2:+35270307 | Msa0768680:five_prime_UTR |
| TTTAGCCGTTTGAGAAGCCT+CGG | 0.569906 | 5_2:-35275364 | None:intergenic |
| AAACCACCAAATTAGGGGAG+GGG | 0.573340 | 5_2:-35275563 | None:intergenic |
| GTGATGATCTACTACGATGG+TGG | 0.573675 | 5_2:-35270250 | None:intergenic |
| AGAAAGAATCAAACACTCGC+CGG | 0.582802 | 5_2:+35270306 | Msa0768680:five_prime_UTR |
| CAAACCACCAAATTAGGGGA+GGG | 0.602794 | 5_2:-35275564 | None:intergenic |
| TATTTCAGGTGGGTATGTGG+TGG | 0.604476 | 5_2:+35274430 | Msa0768680:intron |
| AGTAGATCATCACAAGTCGC+CGG | 0.627253 | 5_2:+35270260 | Msa0768680:five_prime_UTR |
| CCAAACCACCAAATTAGGGG+AGG | 0.630136 | 5_2:-35275565 | None:intergenic |
| GAGTTTCTTACAATTTGTGG+CGG | 0.645385 | 5_2:-35270372 | None:intergenic |
| CACAGAAGAAGATGCCTCTG+GGG | 0.646490 | 5_2:+35272224 | Msa0768680:intron |
| CGGAGGTCTTCGCTTCTATG+GGG | 0.653982 | 5_2:-35275344 | None:intergenic |
| TTGCGAGTGAAGAAACCAGT+GGG | 0.657886 | 5_2:-35272355 | None:intergenic |
| GATGATCTACTACGATGGTG+GGG | 0.669208 | 5_2:-35270248 | None:intergenic |
| TCACCAAAACGTGCTCCTCG+AGG | 0.681691 | 5_2:+35272307 | Msa0768680:CDS |
| ATTCCAAACCACCAAATTAG+GGG | 0.683587 | 5_2:-35275568 | None:intergenic |
| CTTGTGATGATCTACTACGA+TGG | 0.688459 | 5_2:-35270253 | None:intergenic |
| AGCCGTTTGAGAAGCCTCGG+AGG | 0.691265 | 5_2:-35275361 | None:intergenic |
| ATTCCTAAAATTAGCCCCAG+AGG | 0.693872 | 5_2:-35272238 | None:intergenic |
| TTTGCGAGTGAAGAAACCAG+TGG | 0.715952 | 5_2:-35272356 | None:intergenic |
| CATAGAAGCGAAGACCTCCG+AGG | 0.750456 | 5_2:+35275347 | Msa0768680:CDS |
| GCTTCTCACGACGACCAGCG+CGG | 0.802268 | 5_2:-35270341 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAATGTAAAAATACA+AGG | - | chr5_2:35271029-35271048 | None:intergenic | 10.0% |
| !!! | TGTATTTTTACATTATAAAA+TGG | + | chr5_2:35271029-35271048 | Msa0768680:intron | 10.0% |
| !! | ATATTTACTATGAAATAAAT+CGG | - | chr5_2:35271986-35272005 | None:intergenic | 10.0% |
| !!! | ATTTATCTTTTTTAAAAACT+TGG | + | chr5_2:35272006-35272025 | Msa0768680:intron | 10.0% |
| !!! | TTTATCTTTTTTAAAAACTT+GGG | + | chr5_2:35272007-35272026 | Msa0768680:intron | 10.0% |
| !!! | TTTGTTTTATTTTGTTATTT+TGG | + | chr5_2:35273809-35273828 | Msa0768680:intron | 10.0% |
| !!! | ATGTATTTTGTAATATTAAT+TGG | + | chr5_2:35274390-35274409 | Msa0768680:intron | 10.0% |
| !!! | TGTATTTTGTAATATTAATT+GGG | + | chr5_2:35274391-35274410 | Msa0768680:intron | 10.0% |
| !! | ATAAAAAGATAAAAATGATT+TGG | + | chr5_2:35275050-35275069 | Msa0768680:intron | 10.0% |
| !!! | TTATAATTCTGAAAATACAA+TGG | - | chr5_2:35271585-35271604 | None:intergenic | 15.0% |
| !!! | GATTTTTGAAATAAATTTGA+AGG | + | chr5_2:35271894-35271913 | Msa0768680:intron | 15.0% |
| !!! | TTTTTATTATGCATTATTAC+TGG | + | chr5_2:35272133-35272152 | Msa0768680:intron | 15.0% |
| !! | ACAATCTTAAAAATATGTAA+TGG | - | chr5_2:35272526-35272545 | None:intergenic | 15.0% |
| !!! | TTTATCTTTTTTACTTTTGT+TGG | - | chr5_2:35272630-35272649 | None:intergenic | 15.0% |
| !!! | AAAATAAGTAACTAAAGTTT+TGG | - | chr5_2:35273178-35273197 | None:intergenic | 15.0% |
| !!! | ATTATTATTAGTCCTTTTTT+GGG | + | chr5_2:35273735-35273754 | Msa0768680:intron | 15.0% |
| !! | AATTTACAAATCATTGAAAA+GGG | - | chr5_2:35273961-35273980 | None:intergenic | 15.0% |
| !! | AAATTTACAAATCATTGAAA+AGG | - | chr5_2:35273962-35273981 | None:intergenic | 15.0% |
| !!! | TTTTCAATGATTTGTAAATT+TGG | + | chr5_2:35273961-35273980 | Msa0768680:intron | 15.0% |
| !! | AATGTAAAACTATATTATCA+AGG | - | chr5_2:35274618-35274637 | None:intergenic | 15.0% |
| !!! | TGAACAATATAATTTCTTTT+AGG | + | chr5_2:35274961-35274980 | Msa0768680:intron | 15.0% |
| !! | TTATACAATTGCAATATTTC+CGG | - | chr5_2:35270282-35270301 | None:intergenic | 20.0% |
| !!! | TGCATTTTTTCTTGAAAAAA+TGG | + | chr5_2:35270582-35270601 | Msa0768680:intron | 20.0% |
| !!! | AATCTCATTCATTTTTCTTT+TGG | + | chr5_2:35270920-35270939 | Msa0768680:intron | 20.0% |
| !! | TATATTTGAACTTTCTTTGA+AGG | + | chr5_2:35271315-35271334 | Msa0768680:intron | 20.0% |
| !! | GTATATCAATATTAATGAAG+TGG | + | chr5_2:35271378-35271397 | Msa0768680:intron | 20.0% |
| !! | TAATAGTATTTAACATGAGA+TGG | - | chr5_2:35271529-35271548 | None:intergenic | 20.0% |
| !! | ATAAATGACAAATCAGTATT+AGG | + | chr5_2:35271601-35271620 | Msa0768680:intron | 20.0% |
| !! | AAAATTCTATTGAGTACAAT+AGG | - | chr5_2:35271638-35271657 | None:intergenic | 20.0% |
| !!! | TGTACTCAATAGAATTTTAT+CGG | + | chr5_2:35271640-35271659 | Msa0768680:intron | 20.0% |
| !! | TCAATTTGACAAATATTTGA+GGG | - | chr5_2:35271706-35271725 | None:intergenic | 20.0% |
| !!! | GTATTGTTTCAATCTTTTAT+AGG | + | chr5_2:35271815-35271834 | Msa0768680:intron | 20.0% |
| !!! | TTTTATAGGAAAGTTTAGTA+TGG | + | chr5_2:35271829-35271848 | Msa0768680:intron | 20.0% |
| !!! | TATCTTTTTTTAGTAGTTTG+AGG | + | chr5_2:35272410-35272429 | Msa0768680:intron | 20.0% |
| !!! | TTTTAATTGTTGTAGTCATA+AGG | + | chr5_2:35272574-35272593 | Msa0768680:intron | 20.0% |
| !!! | TCTATTTTGTTTAGAAACTA+TGG | - | chr5_2:35272751-35272770 | None:intergenic | 20.0% |
| !!! | TATTTATCTAAAATGTTCAC+TGG | + | chr5_2:35272782-35272801 | Msa0768680:intron | 20.0% |
| !!! | TCAATAAAAGTACATTAATC+TGG | - | chr5_2:35272836-35272855 | None:intergenic | 20.0% |
| !!! | ACATAAGTAACTAAAGTTTT+TGG | - | chr5_2:35272959-35272978 | None:intergenic | 20.0% |
| !!! | TATTTTAATGCAAACATAAG+AGG | + | chr5_2:35273106-35273125 | Msa0768680:intron | 20.0% |
| !!! | ATTTGGCTATAATTTTCATT+GGG | + | chr5_2:35273545-35273564 | Msa0768680:intron | 20.0% |
| !!! | GATTATTATTAGTCCTTTTT+TGG | + | chr5_2:35273734-35273753 | Msa0768680:intron | 20.0% |
| !!! | ATCTTAAATTTTCCCAAAAA+AGG | - | chr5_2:35273750-35273769 | None:intergenic | 20.0% |
| !!! | TTTTGGGAAAATTTAAGATT+TGG | + | chr5_2:35273751-35273770 | Msa0768680:intron | 20.0% |
| !! | ATTTACAAATCATTGAAAAG+GGG | - | chr5_2:35273960-35273979 | None:intergenic | 20.0% |
| !! | AAACACTAGAATCATTATTT+AGG | + | chr5_2:35274253-35274272 | Msa0768680:intron | 20.0% |
| !! | TAAAACTATATTATCAAGGA+AGG | - | chr5_2:35274614-35274633 | None:intergenic | 20.0% |
| !!! | AATTTCTTTTAGGAATGATT+CGG | + | chr5_2:35274971-35274990 | Msa0768680:intron | 20.0% |
| !!! | TAAAAATGATTTGGTGTATT+TGG | + | chr5_2:35275059-35275078 | Msa0768680:intron | 20.0% |
| ! | AAAGTAAACAAAGACAAAGA+AGG | - | chr5_2:35270402-35270421 | None:intergenic | 25.0% |
| !! | AATTGTAAGTAATGTTGGTT+TGG | + | chr5_2:35270651-35270670 | Msa0768680:intron | 25.0% |
| ! | AAATCTGTGATACTGTAATA+GGG | + | chr5_2:35270698-35270717 | Msa0768680:intron | 25.0% |
| ! | AAAATGATCTTCATTTCCAT+CGG | + | chr5_2:35271356-35271375 | Msa0768680:intron | 25.0% |
| ! | CATTAATATTGATATACCGA+TGG | - | chr5_2:35271375-35271394 | None:intergenic | 25.0% |
| ! | CAATATTAATGAAGTGGTAA+CGG | + | chr5_2:35271384-35271403 | Msa0768680:intron | 25.0% |
| ! | AAATACAATGGTCAACTATA+CGG | - | chr5_2:35271573-35271592 | None:intergenic | 25.0% |
| ! | ACAAATCAGTATTAGGAATA+TGG | + | chr5_2:35271608-35271627 | Msa0768680:intron | 25.0% |
| ! | CAGTATCTTCAGAAAAAAAT+AGG | - | chr5_2:35271666-35271685 | None:intergenic | 25.0% |
| !!! | TTTTCTGAAGATACTGTAAT+AGG | + | chr5_2:35271670-35271689 | Msa0768680:intron | 25.0% |
| ! | GTCAATTTGACAAATATTTG+AGG | - | chr5_2:35271707-35271726 | None:intergenic | 25.0% |
| ! | TTGAAGGAAATAAGTGTAAA+CGG | + | chr5_2:35271910-35271929 | Msa0768680:intron | 25.0% |
| !!! | CAAAGGTTTGTTTTCTTTAA+TGG | + | chr5_2:35272375-35272394 | Msa0768680:intron | 25.0% |
| !!! | TTTTTAAGATTGTTGAGATC+TGG | + | chr5_2:35272533-35272552 | Msa0768680:intron | 25.0% |
| !!! | GAAAACTCTAAAATTCTTAG+TGG | + | chr5_2:35272656-35272675 | Msa0768680:intron | 25.0% |
| !!! | TAAGTAACTAAAGTTTTTGG+AGG | - | chr5_2:35272956-35272975 | None:intergenic | 25.0% |
| !! | GAATATTAGCCTAGTTATTT+AGG | - | chr5_2:35273132-35273151 | None:intergenic | 25.0% |
| ! | AAATACAATCTGAATGTACT+TGG | + | chr5_2:35273211-35273230 | Msa0768680:intron | 25.0% |
| ! | TAGATATTTCATACACTGAA+AGG | + | chr5_2:35273324-35273343 | Msa0768680:intron | 25.0% |
| ! | GTAATGAGATAAATCATTCT+AGG | + | chr5_2:35273372-35273391 | Msa0768680:intron | 25.0% |
| ! | AATGGAAAATCACTTCTTAA+AGG | - | chr5_2:35273512-35273531 | None:intergenic | 25.0% |
| !! | TTTAAGAAGTGATTTTCCAT+TGG | + | chr5_2:35273511-35273530 | Msa0768680:intron | 25.0% |
| !! | GATTTGGCTATAATTTTCAT+TGG | + | chr5_2:35273544-35273563 | Msa0768680:intron | 25.0% |
| ! | AGAACAATTCTTACATATGA+TGG | + | chr5_2:35273613-35273632 | Msa0768680:intron | 25.0% |
| !!! | CATTTCATGTTTTAGTTTCA+TGG | - | chr5_2:35273697-35273716 | None:intergenic | 25.0% |
| ! | AACATGAAATGTTAACACTT+TGG | + | chr5_2:35273706-35273725 | Msa0768680:intron | 25.0% |
| !!! | TGGACTGTTGATTTAAATAA+AGG | + | chr5_2:35273829-35273848 | Msa0768680:intron | 25.0% |
| !!! | ACTGTTGATTTAAATAAAGG+TGG | + | chr5_2:35273832-35273851 | Msa0768680:intron | 25.0% |
| ! | ACATTAAGTAACCCTAAATT+AGG | + | chr5_2:35273861-35273880 | Msa0768680:intron | 25.0% |
| ! | CATTAAGTAACCCTAAATTA+GGG | + | chr5_2:35273862-35273881 | Msa0768680:intron | 25.0% |
| !!! | TAGTTGATTTTGACTTATGA+GGG | + | chr5_2:35274048-35274067 | Msa0768680:intron | 25.0% |
| !! | CTATGTTAAACTTTAGAAAG+TGG | + | chr5_2:35274161-35274180 | Msa0768680:intron | 25.0% |
| ! | AAGCAGCAAAAATTATTACA+AGG | - | chr5_2:35274191-35274210 | None:intergenic | 25.0% |
| !! | TTATGGTGTCAAAATTTACA+TGG | + | chr5_2:35274563-35274582 | Msa0768680:intron | 25.0% |
| !! | TATGGTGTCAAAATTTACAT+GGG | + | chr5_2:35274564-35274583 | Msa0768680:intron | 25.0% |
| !!! | ACTTTGTTTTAGCTCATTTA+TGG | + | chr5_2:35274674-35274693 | Msa0768680:intron | 25.0% |
| ! | TGCAATGAAACAAAATAACA+TGG | - | chr5_2:35274770-35274789 | None:intergenic | 25.0% |
| !!! | ATTTCTTTTAGGAATGATTC+GGG | + | chr5_2:35274972-35274991 | Msa0768680:intron | 25.0% |
| !!! | TTTTTTGAGTTCTTCCATAT+AGG | + | chr5_2:35275109-35275128 | Msa0768680:intron | 25.0% |
| ! | AAAACTAAAACTCTCCTATA+TGG | - | chr5_2:35275126-35275145 | None:intergenic | 25.0% |
| !!! | ATAGGAGAGTTTTAGTTTTA+TGG | + | chr5_2:35275127-35275146 | Msa0768680:intron | 25.0% |
| ! | AATCTTATTGTTTGAGAGTT+AGG | - | chr5_2:35275234-35275253 | None:intergenic | 25.0% |
| ! | GTATTCTAAACTACTGAATT+TGG | - | chr5_2:35275393-35275412 | None:intergenic | 25.0% |
| GTTGAGTTTCTTACAATTTG+TGG | - | chr5_2:35270378-35270397 | None:intergenic | 30.0% | |
| TCACGACACAAAATAGTAAA+GGG | - | chr5_2:35270439-35270458 | None:intergenic | 30.0% | |
| TTCACGACACAAAATAGTAA+AGG | - | chr5_2:35270440-35270459 | None:intergenic | 30.0% | |
| ACAAATTCTTTGTGTGCATA+TGG | + | chr5_2:35270612-35270631 | Msa0768680:intron | 30.0% | |
| CAAATTCTTTGTGTGCATAT+GGG | + | chr5_2:35270613-35270632 | Msa0768680:intron | 30.0% | |
| GCGATAATTGTAAGTAATGT+TGG | + | chr5_2:35270646-35270665 | Msa0768680:intron | 30.0% | |
| CAAATCTGTGATACTGTAAT+AGG | + | chr5_2:35270697-35270716 | Msa0768680:intron | 30.0% | |
| AATCTGTGATACTGTAATAG+GGG | + | chr5_2:35270699-35270718 | Msa0768680:intron | 30.0% | |
| ACACAATCAACAGAATCATT+TGG | - | chr5_2:35270989-35271008 | None:intergenic | 30.0% | |
| ATAAAATGGCCTATAATGTG+TGG | + | chr5_2:35271043-35271062 | Msa0768680:intron | 30.0% | |
| GCTAAAATTAACGTTCAAAG+AGG | - | chr5_2:35271236-35271255 | None:intergenic | 30.0% | |
| CAGATCTAGACATTTGATAT+TGG | - | chr5_2:35271263-35271282 | None:intergenic | 30.0% | |
| GTACAGATCAAACATAACAA+TGG | - | chr5_2:35271489-35271508 | None:intergenic | 30.0% | |
| GATGGTAACATACATAAACA+TGG | - | chr5_2:35271511-35271530 | None:intergenic | 30.0% | |
| TTTGACAAATATTTGAGGGA+GGG | - | chr5_2:35271702-35271721 | None:intergenic | 30.0% | |
| ATTTGACAAATATTTGAGGG+AGG | - | chr5_2:35271703-35271722 | None:intergenic | 30.0% | |
| ! | GTGAGACTTTTTGAATTGTT+AGG | + | chr5_2:35271745-35271764 | Msa0768680:intron | 30.0% |
| ! | TGCAGATTATGTTATTTGAC+TGG | + | chr5_2:35272165-35272184 | Msa0768680:intron | 30.0% |
| TAATGGAATCAAGTAATCGA+TGG | - | chr5_2:35272509-35272528 | None:intergenic | 30.0% | |
| AAGTACATTAATCTGGAGAA+TGG | - | chr5_2:35272829-35272848 | None:intergenic | 30.0% | |
| GTTTCCTATGAATATCTTTG+AGG | + | chr5_2:35272884-35272903 | Msa0768680:intron | 30.0% | |
| GATTCCTCAAAGATATTCAT+AGG | - | chr5_2:35272891-35272910 | None:intergenic | 30.0% | |
| !! | CTAAAGTTTTTGGAGGATTT+TGG | - | chr5_2:35272949-35272968 | None:intergenic | 30.0% |
| AGATATAACCTGAATGTACT+TGG | - | chr5_2:35273084-35273103 | None:intergenic | 30.0% | |
| !! | CGATTTTGGAGATAATGTTA+CGG | - | chr5_2:35273154-35273173 | None:intergenic | 30.0% |
| !!! | ACTAAAGTTTTGGACGATTT+TGG | - | chr5_2:35273168-35273187 | None:intergenic | 30.0% |
| AGGCATAACTTACAATGTTT+AGG | + | chr5_2:35273344-35273363 | Msa0768680:intron | 30.0% | |
| GCATAATCGAATTCTTGTAT+AGG | + | chr5_2:35273580-35273599 | Msa0768680:intron | 30.0% | |
| GCATATTACTCCCTAATTTA+GGG | - | chr5_2:35273875-35273894 | None:intergenic | 30.0% | |
| AGCATATTACTCCCTAATTT+AGG | - | chr5_2:35273876-35273895 | None:intergenic | 30.0% | |
| AAATTAGGGAGTAATATGCT+AGG | + | chr5_2:35273876-35273895 | Msa0768680:intron | 30.0% | |
| ! | CAATGATTTGTAAATTTGGC+TGG | + | chr5_2:35273965-35273984 | Msa0768680:intron | 30.0% |
| !!! | TAGTTGATTTTGACTTACGA+GGG | + | chr5_2:35274005-35274024 | Msa0768680:intron | 30.0% |
| !!! | CTAGTTGATTTTGACTTATG+AGG | + | chr5_2:35274047-35274066 | Msa0768680:intron | 30.0% |
| TGTTTCGCTTTATCTTTATG+AGG | + | chr5_2:35274088-35274107 | Msa0768680:intron | 30.0% | |
| GTTTCGCTTTATCTTTATGA+GGG | + | chr5_2:35274089-35274108 | Msa0768680:intron | 30.0% | |
| GAAGACACATTTACTAACTA+TGG | - | chr5_2:35274230-35274249 | None:intergenic | 30.0% | |
| !! | AACCATGAAAAGCACATTTT+AGG | + | chr5_2:35274323-35274342 | Msa0768680:intron | 30.0% |
| ! | TACCTAAAATGTGCTTTTCA+TGG | - | chr5_2:35274328-35274347 | None:intergenic | 30.0% |
| AAATCAGGAACTACATAGTT+GGG | - | chr5_2:35274470-35274489 | None:intergenic | 30.0% | |
| CTATTTCCTCTGTCAAAATA+AGG | - | chr5_2:35274722-35274741 | None:intergenic | 30.0% | |
| ! | TATTGTTTGAGGCAAAGAAA+GGG | + | chr5_2:35274909-35274928 | Msa0768680:intron | 30.0% |
| !! | TTTCTTTTAGGAATGATTCG+GGG | + | chr5_2:35274973-35274992 | Msa0768680:intron | 30.0% |
| !! | CTGAAGAGTTTTATAAGACT+TGG | - | chr5_2:35275085-35275104 | None:intergenic | 30.0% |
| TTTGAGAGTTAGGATGTAAA+GGG | - | chr5_2:35275224-35275243 | None:intergenic | 30.0% | |
| TGTGACAGTAAGATTATTCA+TGG | - | chr5_2:35275439-35275458 | None:intergenic | 30.0% | |
| CATGCATCATGTTACAAATA+CGG | - | chr5_2:35275494-35275513 | None:intergenic | 30.0% | |
| TTGTAACATGATGCATGATT+TGG | + | chr5_2:35275497-35275516 | Msa0768680:three_prime_UTR | 30.0% | |
| TCTACTAAGATAAACGTGTT+GGG | - | chr5_2:35275640-35275659 | None:intergenic | 30.0% | |
| GAGTTTCTTACAATTTGTGG+CGG | - | chr5_2:35270375-35270394 | None:intergenic | 35.0% | |
| GACACAAAATAGTAAAGGGA+AGG | - | chr5_2:35270435-35270454 | None:intergenic | 35.0% | |
| AATTGAACATAGAAGCTAGC+TGG | - | chr5_2:35270508-35270527 | None:intergenic | 35.0% | |
| GTTCAATTCTGTGAGATTGA+AGG | + | chr5_2:35270520-35270539 | Msa0768680:intron | 35.0% | |
| ! | TTGAGAGCTATTGACTATTG+TGG | - | chr5_2:35270680-35270699 | None:intergenic | 35.0% |
| ATGAATCTCAACCCTATAAG+AGG | + | chr5_2:35270802-35270821 | Msa0768680:intron | 35.0% | |
| TGAATCTCAACCCTATAAGA+GGG | + | chr5_2:35270803-35270822 | Msa0768680:intron | 35.0% | |
| AACCCTATAAGAGGGAAAAT+AGG | + | chr5_2:35270811-35270830 | Msa0768680:intron | 35.0% | |
| ACCCTATAAGAGGGAAAATA+GGG | + | chr5_2:35270812-35270831 | Msa0768680:intron | 35.0% | |
| ! | TCCCTATTTTCCCTCTTATA+GGG | - | chr5_2:35270816-35270835 | None:intergenic | 35.0% |
| ! | ATCCCTATTTTCCCTCTTAT+AGG | - | chr5_2:35270817-35270836 | None:intergenic | 35.0% |
| GAGGGAAAATAGGGATATAT+CGG | + | chr5_2:35270821-35270840 | Msa0768680:intron | 35.0% | |
| ! | TTCCCATGTCTTTGCTATAT+AGG | + | chr5_2:35270962-35270981 | Msa0768680:intron | 35.0% |
| ! | TCCCATGTCTTTGCTATATA+GGG | + | chr5_2:35270963-35270982 | Msa0768680:intron | 35.0% |
| ! | ATGATTCTGTTGATTGTGTG+TGG | + | chr5_2:35270990-35271009 | Msa0768680:intron | 35.0% |
| ACCTTCAAACCACACATTAT+AGG | - | chr5_2:35271055-35271074 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTGCCCTCCATTCA+CGG | + | chr5_2:35271147-35271166 | Msa0768680:intron | 35.0% |
| TAACGTTCAAAGAGGAATGA+GGG | - | chr5_2:35271228-35271247 | None:intergenic | 35.0% | |
| TTAACGTTCAAAGAGGAATG+AGG | - | chr5_2:35271229-35271248 | None:intergenic | 35.0% | |
| CTAGACATTTGATATTGGTG+TGG | - | chr5_2:35271258-35271277 | None:intergenic | 35.0% | |
| TGTAATTGAGTTATACCCTC+AGG | - | chr5_2:35271292-35271311 | None:intergenic | 35.0% | |
| CAGATCAAACATAACAATGG+AGG | - | chr5_2:35271486-35271505 | None:intergenic | 35.0% | |
| AGACATGATGCAAATTGGAA+TGG | - | chr5_2:35271776-35271795 | None:intergenic | 35.0% | |
| AAAGCAGACATGATGCAAAT+TGG | - | chr5_2:35271781-35271800 | None:intergenic | 35.0% | |
| AGCCTATAGACCAATTCAAT+GGG | - | chr5_2:35271961-35271980 | None:intergenic | 35.0% | |
| AAAAACTTGGGTCTATAAGC+CGG | + | chr5_2:35272019-35272038 | Msa0768680:intron | 35.0% | |
| TCCAAAAACAATGTGGACAA+GGG | - | chr5_2:35272045-35272064 | None:intergenic | 35.0% | |
| CTCATAGTCCAAAAACAATG+TGG | - | chr5_2:35272052-35272071 | None:intergenic | 35.0% | |
| ! | TTGGACTATGAGCTTTTCTA+TGG | + | chr5_2:35272060-35272079 | Msa0768680:intron | 35.0% |
| ! | TGGACTATGAGCTTTTCTAT+GGG | + | chr5_2:35272061-35272080 | Msa0768680:intron | 35.0% |
| TTTCTATGGGTGAACTTTCT+TGG | + | chr5_2:35272074-35272093 | Msa0768680:intron | 35.0% | |
| !! | TGGGGCTAATTTTAGGAATT+GGG | + | chr5_2:35272242-35272261 | Msa0768680:CDS | 35.0% |
| !! | GCTAATTTTAGGAATTGGGA+GGG | + | chr5_2:35272246-35272265 | Msa0768680:CDS | 35.0% |
| ! | GTTTTCTTTAATGGAAGTCG+TGG | + | chr5_2:35272384-35272403 | Msa0768680:intron | 35.0% |
| CAGAGATAGTGATAAAATGC+TGG | - | chr5_2:35272477-35272496 | None:intergenic | 35.0% | |
| ! | CAGCATTTTATCACTATCTC+TGG | + | chr5_2:35272475-35272494 | Msa0768680:intron | 35.0% |
| TTGTTGTAGTCATAAGGTTG+AGG | + | chr5_2:35272580-35272599 | Msa0768680:intron | 35.0% | |
| TGTTGTAGTCATAAGGTTGA+GGG | + | chr5_2:35272581-35272600 | Msa0768680:intron | 35.0% | |
| ! | ATCTAAAATGTTCACTGGAG+AGG | + | chr5_2:35272787-35272806 | Msa0768680:intron | 35.0% |
| TTGAGGAATCAGCAATTGTT+AGG | + | chr5_2:35272901-35272920 | Msa0768680:intron | 35.0% | |
| TTTACTACTCAAGCTGATGA+TGG | - | chr5_2:35273247-35273266 | None:intergenic | 35.0% | |
| GCAAATAACCAAGTACATTC+AGG | + | chr5_2:35273073-35273092 | Msa0768680:intron | 35.0% | |
| CATAAGAGGCCTAAATAACT+AGG | + | chr5_2:35273120-35273139 | Msa0768680:intron | 35.0% | |
| TTTACTACTCAAGCTGATGA+TGG | + | chr5_2:35273247-35273266 | Msa0768680:intron | 35.0% | |
| CAAATCAGCTTAATGACCAA+TGG | - | chr5_2:35273530-35273549 | None:intergenic | 35.0% | |
| CATTGGTCATTAAGCTGATT+TGG | + | chr5_2:35273528-35273547 | Msa0768680:intron | 35.0% | |
| TGCATTACATATCACGTGAA+AGG | + | chr5_2:35273651-35273670 | Msa0768680:intron | 35.0% | |
| !!! | GTTTAAAAGCCTTTTAGCTC+TGG | - | chr5_2:35273938-35273957 | None:intergenic | 35.0% |
| !!! | CTAGTTGATTTTGACTTACG+AGG | + | chr5_2:35274004-35274023 | Msa0768680:intron | 35.0% |
| AGATAAAGCGAAACACAAGT+AGG | - | chr5_2:35274083-35274102 | None:intergenic | 35.0% | |
| CAACAAAACCCAGAATAGAA+AGG | - | chr5_2:35274123-35274142 | None:intergenic | 35.0% | |
| GTAATCCTGCGTATTATTTC+AGG | + | chr5_2:35274416-35274435 | Msa0768680:intron | 35.0% | |
| ! | TATTATTTCAGGTGGGTATG+TGG | + | chr5_2:35274427-35274446 | Msa0768680:intron | 35.0% |
| CAAATCAGGAACTACATAGT+TGG | - | chr5_2:35274471-35274490 | None:intergenic | 35.0% | |
| ! | TATGTAGTTCCTGATTTGAC+TGG | + | chr5_2:35274473-35274492 | Msa0768680:CDS | 35.0% |
| !!! | TCCTGATTTGACTGGTTTTA+AGG | + | chr5_2:35274481-35274500 | Msa0768680:CDS | 35.0% |
| ACCTTAAAACCAGTCAAATC+AGG | - | chr5_2:35274485-35274504 | None:intergenic | 35.0% | |
| TAGTCATACGATTAGATGAG+TGG | - | chr5_2:35274517-35274536 | None:intergenic | 35.0% | |
| AAACACGTAGAAAGAAGACA+AGG | - | chr5_2:35274545-35274564 | None:intergenic | 35.0% | |
| GTCTTCTTTCTACGTGTTTA+TGG | + | chr5_2:35274546-35274565 | Msa0768680:intron | 35.0% | |
| AAATTTACATGGGTAGCCAT+TGG | + | chr5_2:35274574-35274593 | Msa0768680:intron | 35.0% | |
| AAGTTAGAGTTCACACAAGA+GGG | - | chr5_2:35274658-35274677 | None:intergenic | 35.0% | |
| AAAGTTAGAGTTCACACAAG+AGG | - | chr5_2:35274659-35274678 | None:intergenic | 35.0% | |
| !!! | TAGCTTCCTTATTTTGACAG+AGG | + | chr5_2:35274713-35274732 | Msa0768680:intron | 35.0% |
| ATGGTGAGAAATGAACATCT+AGG | - | chr5_2:35274751-35274770 | None:intergenic | 35.0% | |
| CTTTCTTTGCCTCAAACAAT+AGG | - | chr5_2:35274910-35274929 | None:intergenic | 35.0% | |
| ! | CTATTGTTTGAGGCAAAGAA+AGG | + | chr5_2:35274908-35274927 | Msa0768680:intron | 35.0% |
| GTTGAGAAATTCTGTGAGTT+TGG | + | chr5_2:35274995-35275014 | Msa0768680:intron | 35.0% | |
| AGAAATTCTGTGAGTTTGGA+GGG | + | chr5_2:35274999-35275018 | Msa0768680:intron | 35.0% | |
| AAAATAAACTCTCGCTCACA+AGG | + | chr5_2:35275153-35275172 | Msa0768680:intron | 35.0% | |
| GTTTGAGAGTTAGGATGTAA+AGG | - | chr5_2:35275225-35275244 | None:intergenic | 35.0% | |
| ATTCCAAACCACCAAATTAG+GGG | - | chr5_2:35275571-35275590 | None:intergenic | 35.0% | |
| CATTCCAAACCACCAAATTA+GGG | - | chr5_2:35275572-35275591 | None:intergenic | 35.0% | |
| CTCTACTAAGATAAACGTGT+TGG | - | chr5_2:35275641-35275660 | None:intergenic | 35.0% | |
| TGATGATCTACTACGATGGT+GGG | - | chr5_2:35270252-35270271 | None:intergenic | 40.0% | |
| CTTGTGATGATCTACTACGA+TGG | - | chr5_2:35270256-35270275 | None:intergenic | 40.0% | |
| AGAAAGAATCAAACACTCGC+CGG | + | chr5_2:35270306-35270325 | Msa0768680:five_prime_UTR | 40.0% | |
| GCCCTATATAGCAAAGACAT+GGG | - | chr5_2:35270967-35270986 | None:intergenic | 40.0% | |
| ! | ATTCTGTTGATTGTGTGTGG+TGG | + | chr5_2:35270993-35271012 | Msa0768680:intron | 40.0% |
| GCCTATAATGTGTGGTTTGA+AGG | + | chr5_2:35271051-35271070 | Msa0768680:intron | 40.0% | |
| ! | AAGCCTGGTAGGAGTTTTTA+TGG | + | chr5_2:35271076-35271095 | Msa0768680:intron | 40.0% |
| AGTAGCGCTAAAACAAGACA+CGG | - | chr5_2:35271102-35271121 | None:intergenic | 40.0% | |
| AACGTTCAAAGAGGAATGAG+GGG | - | chr5_2:35271227-35271246 | None:intergenic | 40.0% | |
| !! | AAGTGGTAACGGAGAATATG+AGG | + | chr5_2:35271395-35271414 | Msa0768680:intron | 40.0% |
| !! | AGTGGTAACGGAGAATATGA+GGG | + | chr5_2:35271396-35271415 | Msa0768680:intron | 40.0% |
| GGCTCATAGAGATTTAGTAC+AGG | + | chr5_2:35271422-35271441 | Msa0768680:intron | 40.0% | |
| ! | AGCCCATTGAATTGGTCTAT+AGG | + | chr5_2:35271956-35271975 | Msa0768680:intron | 40.0% |
| CAGCCTATAGACCAATTCAA+TGG | - | chr5_2:35271962-35271981 | None:intergenic | 40.0% | |
| ! | CATTGAATTGGTCTATAGGC+TGG | + | chr5_2:35271960-35271979 | Msa0768680:intron | 40.0% |
| GTCCAAAAACAATGTGGACA+AGG | - | chr5_2:35272046-35272065 | None:intergenic | 40.0% | |
| ATTCCTAAAATTAGCCCCAG+AGG | - | chr5_2:35272241-35272260 | None:intergenic | 40.0% | |
| !! | CTGGGGCTAATTTTAGGAAT+TGG | + | chr5_2:35272241-35272260 | Msa0768680:CDS | 40.0% |
| !! | GGCTAATTTTAGGAATTGGG+AGG | + | chr5_2:35272245-35272264 | Msa0768680:CDS | 40.0% |
| TTTCCCTTGTAAAAACCTCG+AGG | - | chr5_2:35272325-35272344 | None:intergenic | 40.0% | |
| GTTGTAGTCATAAGGTTGAG+GGG | + | chr5_2:35272582-35272601 | Msa0768680:intron | 40.0% | |
| TGTAATCATCGAAATCCCCA+AGG | + | chr5_2:35272689-35272708 | Msa0768680:intron | 40.0% | |
| GCTAGGTCAACAAATTAGAG+TGG | + | chr5_2:35273893-35273912 | Msa0768680:intron | 40.0% | |
| ! | CAAATTAGAGTGGAAAGCAC+TGG | + | chr5_2:35273903-35273922 | Msa0768680:intron | 40.0% |
| CTGGTAGTCCTTTCTATTCT+GGG | + | chr5_2:35274112-35274131 | Msa0768680:intron | 40.0% | |
| !! | TTTTGCTGCTTCTCATGTTC+TGG | + | chr5_2:35274200-35274219 | Msa0768680:intron | 40.0% |
| ATCCTGCGTATTATTTCAGG+TGG | + | chr5_2:35274419-35274438 | Msa0768680:intron | 40.0% | |
| ! | TCCTGCGTATTATTTCAGGT+GGG | + | chr5_2:35274420-35274439 | Msa0768680:intron | 40.0% |
| GGAGAAGAACTGAATACCAA+TGG | - | chr5_2:35274593-35274612 | None:intergenic | 40.0% | |
| ACAAGAGGGAGAGCAATTAA+AGG | - | chr5_2:35274644-35274663 | None:intergenic | 40.0% | |
| GTGCTTGTATTTGCTTCTGT+AGG | + | chr5_2:35274817-35274836 | Msa0768680:intron | 40.0% | |
| ACAATAGGATACTGCAGCTA+AGG | - | chr5_2:35274895-35274914 | None:intergenic | 40.0% | |
| CTGCAGTATCCTATTGTTTG+AGG | + | chr5_2:35274898-35274917 | Msa0768680:intron | 40.0% | |
| GAGAAATTCTGTGAGTTTGG+AGG | + | chr5_2:35274998-35275017 | Msa0768680:intron | 40.0% | |
| ! | GATGGAGAGAAAAGGGTTTT+GGG | + | chr5_2:35275021-35275040 | Msa0768680:intron | 40.0% |
| GGAAGGATTTGGGAGTAAAA+GGG | - | chr5_2:35275203-35275222 | None:intergenic | 40.0% | |
| GGATGTAAAGGGAAGGATTT+GGG | - | chr5_2:35275213-35275232 | None:intergenic | 40.0% | |
| AGGATGTAAAGGGAAGGATT+TGG | - | chr5_2:35275214-35275233 | None:intergenic | 40.0% | |
| AGAGTTAGGATGTAAAGGGA+AGG | - | chr5_2:35275220-35275239 | None:intergenic | 40.0% | |
| CCATTCCAAACCACCAAATT+AGG | - | chr5_2:35275573-35275592 | None:intergenic | 40.0% | |
| ! | CCTAATTTGGTGGTTTGGAA+TGG | + | chr5_2:35275570-35275589 | Msa0768680:three_prime_UTR | 40.0% |
| GATGATCTACTACGATGGTG+GGG | - | chr5_2:35270251-35270270 | None:intergenic | 45.0% | |
| GTGATGATCTACTACGATGG+TGG | - | chr5_2:35270253-35270272 | None:intergenic | 45.0% | |
| AGTAGATCATCACAAGTCGC+CGG | + | chr5_2:35270260-35270279 | Msa0768680:five_prime_UTR | 45.0% | |
| GAAAGAATCAAACACTCGCC+GGG | + | chr5_2:35270307-35270326 | Msa0768680:five_prime_UTR | 45.0% | |
| AGCTGGAAAATGCAGTCTCA+TGG | - | chr5_2:35270491-35270510 | None:intergenic | 45.0% | |
| GGCCCTATATAGCAAAGACA+TGG | - | chr5_2:35270968-35270987 | None:intergenic | 45.0% | |
| TGTGGTTTGAAGGTTAAGCC+TGG | + | chr5_2:35271061-35271080 | Msa0768680:intron | 45.0% | |
| GTTTGAAGGTTAAGCCTGGT+AGG | + | chr5_2:35271065-35271084 | Msa0768680:intron | 45.0% | |
| !!! | GTGTCTTGTTTTAGCGCTAC+TGG | + | chr5_2:35271101-35271120 | Msa0768680:intron | 45.0% |
| AAACACAAGCCGTGAATGGA+GGG | - | chr5_2:35271159-35271178 | None:intergenic | 45.0% | |
| TTCAAAGAGGAATGAGGGGT+GGG | - | chr5_2:35271223-35271242 | None:intergenic | 45.0% | |
| TTGAGTTATACCCTCAGGCA+GGG | - | chr5_2:35271287-35271306 | None:intergenic | 45.0% | |
| ATTGAGTTATACCCTCAGGC+AGG | - | chr5_2:35271288-35271307 | None:intergenic | 45.0% | |
| TAACGGAGAATATGAGGGCA+GGG | + | chr5_2:35271401-35271420 | Msa0768680:intron | 45.0% | |
| TGTGAGCTAGCCCATTGAAT+TGG | + | chr5_2:35271948-35271967 | Msa0768680:intron | 45.0% | |
| AAAACAATGTGGACAAGGGC+CGG | - | chr5_2:35272041-35272060 | None:intergenic | 45.0% | |
| ! | GCCCTTGTCCACATTGTTTT+TGG | + | chr5_2:35272041-35272060 | Msa0768680:intron | 45.0% |
| TATTTGACTGGCATCGCTGA+TGG | + | chr5_2:35272177-35272196 | Msa0768680:intron | 45.0% | |
| TCACAGAAGAAGATGCCTCT+GGG | + | chr5_2:35272223-35272242 | Msa0768680:intron | 45.0% | |
| !!! | ATGCCTCTGGGGCTAATTTT+AGG | + | chr5_2:35272235-35272254 | Msa0768680:CDS | 45.0% |
| ! | TGCTCCTCGAGGTTTTTACA+AGG | + | chr5_2:35272318-35272337 | Msa0768680:CDS | 45.0% |
| ! | GCTCCTCGAGGTTTTTACAA+GGG | + | chr5_2:35272319-35272338 | Msa0768680:CDS | 45.0% |
| TTGCGAGTGAAGAAACCAGT+GGG | - | chr5_2:35272358-35272377 | None:intergenic | 45.0% | |
| TTTGCGAGTGAAGAAACCAG+TGG | - | chr5_2:35272359-35272378 | None:intergenic | 45.0% | |
| ! | ACTGGTTTCTTCACTCGCAA+AGG | + | chr5_2:35272358-35272377 | Msa0768680:CDS | 45.0% |
| !! | ATCTGGAGAATGGTACTGAC+AGG | - | chr5_2:35272819-35272838 | None:intergenic | 45.0% |
| !!! | AAAGCCTTTTAGCTCTGGTC+CGG | - | chr5_2:35273933-35273952 | None:intergenic | 45.0% |
| CGCTTTATCTTTATGAGGGC+TGG | + | chr5_2:35274093-35274112 | Msa0768680:intron | 45.0% | |
| GCTGGTAGTCCTTTCTATTC+TGG | + | chr5_2:35274111-35274130 | Msa0768680:intron | 45.0% | |
| ACCCACCTGAAATAATACGC+AGG | - | chr5_2:35274424-35274443 | None:intergenic | 45.0% | |
| ! | TATTTCAGGTGGGTATGTGG+TGG | + | chr5_2:35274430-35274449 | Msa0768680:intron | 45.0% |
| ATTCTGTGAGTTTGGAGGGA+TGG | + | chr5_2:35275003-35275022 | Msa0768680:intron | 45.0% | |
| TTTGGAGGGATGGAGAGAAA+AGG | + | chr5_2:35275013-35275032 | Msa0768680:intron | 45.0% | |
| TTGGAGGGATGGAGAGAAAA+GGG | + | chr5_2:35275014-35275033 | Msa0768680:intron | 45.0% | |
| ! | GGATGGAGAGAAAAGGGTTT+TGG | + | chr5_2:35275020-35275039 | Msa0768680:intron | 45.0% |
| ATAAACTCTCGCTCACAAGG+TGG | + | chr5_2:35275156-35275175 | Msa0768680:intron | 45.0% | |
| GGGAAGGATTTGGGAGTAAA+AGG | - | chr5_2:35275204-35275223 | None:intergenic | 45.0% | |
| !! | ATGGGGCATTGGGATACATA+TGG | - | chr5_2:35275330-35275349 | None:intergenic | 45.0% |
| TTTAGCCGTTTGAGAAGCCT+CGG | - | chr5_2:35275367-35275386 | None:intergenic | 45.0% | |
| AAATCACCCCTCCCCTAATT+TGG | + | chr5_2:35275557-35275576 | Msa0768680:three_prime_UTR | 45.0% | |
| AAACCACCAAATTAGGGGAG+GGG | - | chr5_2:35275566-35275585 | None:intergenic | 45.0% | |
| CAAACCACCAAATTAGGGGA+GGG | - | chr5_2:35275567-35275586 | None:intergenic | 45.0% | |
| CGGCCATAAAAACTCCTACC+AGG | - | chr5_2:35271082-35271101 | None:intergenic | 50.0% | |
| CAAACACAAGCCGTGAATGG+AGG | - | chr5_2:35271160-35271179 | None:intergenic | 50.0% | |
| CTCCATTCACGGCTTGTGTT+TGG | + | chr5_2:35271158-35271177 | Msa0768680:intron | 50.0% | |
| CACCAAACACAAGCCGTGAA+TGG | - | chr5_2:35271163-35271182 | None:intergenic | 50.0% | |
| GTTCAAAGAGGAATGAGGGG+TGG | - | chr5_2:35271224-35271243 | None:intergenic | 50.0% | |
| TGAGTTATACCCTCAGGCAG+GGG | - | chr5_2:35271286-35271305 | None:intergenic | 50.0% | |
| ! | GTAACGGAGAATATGAGGGC+AGG | + | chr5_2:35271400-35271419 | Msa0768680:intron | 50.0% |
| CTCACAGAAGAAGATGCCTC+TGG | + | chr5_2:35272222-35272241 | Msa0768680:intron | 50.0% | |
| CACAGAAGAAGATGCCTCTG+GGG | + | chr5_2:35272224-35272243 | Msa0768680:intron | 50.0% | |
| !! | AAACCTCGAGGAGCACGTTT+TGG | - | chr5_2:35272313-35272332 | None:intergenic | 50.0% |
| TCATCGAAATCCCCAAGGCA+AGG | + | chr5_2:35272694-35272713 | Msa0768680:intron | 50.0% | |
| AAATCCCCAAGGCAAGGATG+CGG | + | chr5_2:35272700-35272719 | Msa0768680:intron | 50.0% | |
| GATACTGCAGCTAAGGACAG+TGG | - | chr5_2:35274888-35274907 | None:intergenic | 50.0% | |
| ! | CTTCGCTTCTATGGGGCATT+GGG | - | chr5_2:35275340-35275359 | None:intergenic | 50.0% |
| TCTTCGCTTCTATGGGGCAT+TGG | - | chr5_2:35275341-35275360 | None:intergenic | 50.0% | |
| TCGGAGGTCTTCGCTTCTAT+GGG | - | chr5_2:35275348-35275367 | None:intergenic | 50.0% | |
| CCAAACCACCAAATTAGGGG+AGG | - | chr5_2:35275568-35275587 | None:intergenic | 50.0% | |
| ! | CCTCCCCTAATTTGGTGGTT+TGG | + | chr5_2:35275565-35275584 | Msa0768680:three_prime_UTR | 50.0% |
| !! | AATGGGCTAGCTCACACCCT+GGG | - | chr5_2:35271944-35271963 | None:intergenic | 55.0% |
| TTGACTGGCATCGCTGATGG+TGG | + | chr5_2:35272180-35272199 | Msa0768680:intron | 55.0% | |
| TCACCAAAACGTGCTCCTCG+AGG | + | chr5_2:35272307-35272326 | Msa0768680:CDS | 55.0% | |
| GGAAAGAACTGCAAGCCCAC+TGG | + | chr5_2:35272340-35272359 | Msa0768680:CDS | 55.0% | |
| AACTCCGCATCCTTGCCTTG+GGG | - | chr5_2:35272707-35272726 | None:intergenic | 55.0% | |
| CAACTCCGCATCCTTGCCTT+GGG | - | chr5_2:35272708-35272727 | None:intergenic | 55.0% | |
| !! | AGTGGAAAGCACTGGACGTC+CGG | + | chr5_2:35273911-35273930 | Msa0768680:intron | 55.0% |
| ACGTCCGGACCAGAGCTAAA+AGG | + | chr5_2:35273926-35273945 | Msa0768680:intron | 55.0% | |
| ! | AGGTGGGTATGTGGTGGTGA+AGG | + | chr5_2:35274436-35274455 | Msa0768680:intron | 55.0% |
| AACTCTCGCTCACAAGGTGG+AGG | + | chr5_2:35275159-35275178 | Msa0768680:intron | 55.0% | |
| CGGAGGTCTTCGCTTCTATG+GGG | - | chr5_2:35275347-35275366 | None:intergenic | 55.0% | |
| CTCGGAGGTCTTCGCTTCTA+TGG | - | chr5_2:35275349-35275368 | None:intergenic | 55.0% | |
| CATAGAAGCGAAGACCTCCG+AGG | + | chr5_2:35275347-35275366 | Msa0768680:CDS | 55.0% | |
| GACCTCCGAGGCTTCTCAAA+CGG | + | chr5_2:35275359-35275378 | Msa0768680:CDS | 55.0% | |
| TCACCCCTCCCCTAATTTGG+TGG | + | chr5_2:35275560-35275579 | Msa0768680:three_prime_UTR | 55.0% | |
| TCTAGATCTGCCCCTGCCTG+AGG | + | chr5_2:35271273-35271292 | Msa0768680:intron | 60.0% | |
| CTAGATCTGCCCCTGCCTGA+GGG | + | chr5_2:35271274-35271293 | Msa0768680:intron | 60.0% | |
| TGTAAACGGCCAACCAGCCC+AGG | + | chr5_2:35271924-35271943 | Msa0768680:intron | 60.0% | |
| GTAAACGGCCAACCAGCCCA+GGG | + | chr5_2:35271925-35271944 | Msa0768680:intron | 60.0% | |
| !! | CAATGGGCTAGCTCACACCC+TGG | - | chr5_2:35271945-35271964 | None:intergenic | 60.0% |
| GCAACTCCGCATCCTTGCCT+TGG | - | chr5_2:35272709-35272728 | None:intergenic | 60.0% | |
| AGCCGTTTGAGAAGCCTCGG+AGG | - | chr5_2:35275364-35275383 | None:intergenic | 60.0% | |
| GCTTCTCACGACGACCAGCG+CGG | - | chr5_2:35270344-35270363 | None:intergenic | 65.0% | |
| !! | AGCTCACACCCTGGGCTGGT+TGG | - | chr5_2:35271936-35271955 | None:intergenic | 65.0% |
| TCTCACGACGACCAGCGCGG+CGG | - | chr5_2:35270341-35270360 | None:intergenic | 70.0% | |
| ! | GGCTAGCTCACACCCTGGGC+TGG | - | chr5_2:35271940-35271959 | None:intergenic | 70.0% |
| AGCGCGGCGGCTGCGTTTCC+CGG | - | chr5_2:35270328-35270347 | None:intergenic | 75.0% | |
| ! | GGGAAACGCAGCCGCCGCGC+TGG | + | chr5_2:35270327-35270346 | Msa0768680:five_prime_UTR | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 35270241 | 35275722 | 35270241 | ID=Msa0768680;Name=Msa0768680 |
| chr5_2 | mRNA | 35270241 | 35275722 | 35270241 | ID=Msa0768680-mRNA-1;Parent=Msa0768680;Name=Msa0768680-mRNA-1;_AED=0.41;_eAED=0.41;_QI=149|1|1|1|1|0.75|4|333|92 |
| chr5_2 | exon | 35270241 | 35270383 | 35270241 | ID=Msa0768680-mRNA-1:exon:12016;Parent=Msa0768680-mRNA-1 |
| chr5_2 | exon | 35272229 | 35272379 | 35272229 | ID=Msa0768680-mRNA-1:exon:12017;Parent=Msa0768680-mRNA-1 |
| chr5_2 | exon | 35274438 | 35274502 | 35274438 | ID=Msa0768680-mRNA-1:exon:12018;Parent=Msa0768680-mRNA-1 |
| chr5_2 | exon | 35275321 | 35275722 | 35275321 | ID=Msa0768680-mRNA-1:exon:12019;Parent=Msa0768680-mRNA-1 |
| chr5_2 | five_prime_UTR | 35270241 | 35270383 | 35270241 | ID=Msa0768680-mRNA-1:five_prime_utr;Parent=Msa0768680-mRNA-1 |
| chr5_2 | five_prime_UTR | 35272229 | 35272234 | 35272229 | ID=Msa0768680-mRNA-1:five_prime_utr;Parent=Msa0768680-mRNA-1 |
| chr5_2 | CDS | 35272235 | 35272379 | 35272235 | ID=Msa0768680-mRNA-1:cds;Parent=Msa0768680-mRNA-1 |
| chr5_2 | CDS | 35274438 | 35274502 | 35274438 | ID=Msa0768680-mRNA-1:cds;Parent=Msa0768680-mRNA-1 |
| chr5_2 | CDS | 35275321 | 35275389 | 35275321 | ID=Msa0768680-mRNA-1:cds;Parent=Msa0768680-mRNA-1 |
| chr5_2 | three_prime_UTR | 35275390 | 35275722 | 35275390 | ID=Msa0768680-mRNA-1:three_prime_utr;Parent=Msa0768680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
