AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0784830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0784830 MtrunA17_Chr5g0436671 97.535 284 7 0 1 284 1 284 0.0 571
Msa0784830 MtrunA17_Chr3g0113201 87.500 288 32 1 1 284 1 288 0.0 505
Msa0784830 MtrunA17_Chr3g0113191 30.851 282 178 6 10 278 8 285 4.83e-32 120
Msa0784830 MtrunA17_Chr5g0436641 30.996 271 170 6 21 278 19 285 8.05e-32 119
Msa0784830 MtrunA17_Chr5g0436681 70.000 40 12 0 178 217 16 55 1.46e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0784830 AT2G39990.1 71.478 291 75 1 2 284 3 293 8.00e-149 419
Msa0784830 AT3G11270.2 32.624 282 170 8 10 278 8 282 2.54e-34 126
Msa0784830 AT3G11270.1 32.281 285 170 8 10 278 8 285 6.97e-34 125
Msa0784830 AT5G05780.2 30.108 279 181 6 10 278 8 282 3.10e-31 118
Msa0784830 AT5G05780.1 29.787 282 181 6 10 278 8 285 7.42e-31 117

Find 104 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGCCAATGAGGTCATTT+TGG 0.165567 5_2:+69553531 None:intergenic
GGGTCTTTAGGGGAGATTAG+AGG 0.229244 5_2:-69552884 Msa0784830:three_prime_UTR
CTTAAATCTGGTTGCTTTAC+GGG 0.235310 5_2:-69552839 Msa0784830:three_prime_UTR
ATTAGGAAGGAGGGGTCTTT+AGG 0.240258 5_2:-69552896 Msa0784830:three_prime_UTR
GTTGACCCAGACAACAAAAT+TGG 0.240414 5_2:-69553586 Msa0784830:CDS
GGTGGGATAGTAACATATTA+TGG 0.265911 5_2:+69556115 None:intergenic
ACTTAAATCTGGTTGCTTTA+CGG 0.284889 5_2:-69552840 Msa0784830:three_prime_UTR
TCTTCTTCCCAAACCTTATC+CGG 0.325083 5_2:-69557235 Msa0784830:CDS
CTTCTCGAGAATAAAATTCA+TGG 0.333882 5_2:+69555920 None:intergenic
TTAGGAAGGAGGGGTCTTTA+GGG 0.335979 5_2:-69552895 Msa0784830:three_prime_UTR
AAAATCCCATCTGATATAGA+AGG 0.343652 5_2:-69553688 Msa0784830:CDS
GGGGAGATTAGAGGGGATAC+TGG 0.344112 5_2:-69552875 Msa0784830:three_prime_UTR
CCATCCAACTATAGCTTCCT+TGG 0.350464 5_2:+69556080 None:intergenic
GAACCTTCCCGGATAAGGTT+TGG 0.364685 5_2:+69557227 None:intergenic
AACCTTCCCGGATAAGGTTT+GGG 0.379305 5_2:+69557228 None:intergenic
TGCAGGTATTCAACTGGTCT+TGG 0.400141 5_2:-69555967 Msa0784830:intron
CGCTTACTCGCCGCCATGAT+CGG 0.404302 5_2:+69557274 None:intergenic
GCACAATGAGTCCGTTGATC+AGG 0.413254 5_2:-69557071 Msa0784830:intron
AACGAGAGGATGAACCTTCC+CGG 0.421025 5_2:+69557216 None:intergenic
GTGTCAACAGTCAAATGTAT+TGG 0.427871 5_2:+69555889 None:intergenic
GCGGAACAGCGTATGAATTA+CGG 0.433298 5_2:+69557092 None:intergenic
AGGATGAACCTTCCCGGATA+AGG 0.434008 5_2:+69557222 None:intergenic
GCTTGTGAATGACAGCTTGC+AGG 0.436231 5_2:-69553503 Msa0784830:intron
AGCCTCAATGACACATCTAT+TGG 0.437864 5_2:-69553659 Msa0784830:CDS
GGTCTTTAGGGGAGATTAGA+GGG 0.441274 5_2:-69552883 Msa0784830:three_prime_UTR
CATCCAACTATAGCTTCCTT+GGG 0.444926 5_2:+69556081 None:intergenic
ACAGTTTCAAGAAATTCCTT+TGG 0.446019 5_2:-69555788 Msa0784830:CDS
TCAACTGGTCTTGGAGTAAC+CGG 0.447005 5_2:-69555958 Msa0784830:CDS
CACATGAACAAGGATCTATT+AGG 0.449887 5_2:-69552913 Msa0784830:three_prime_UTR
TTCCGATGACGCGCTCCGCT+TGG 0.452042 5_2:+69557155 None:intergenic
GTCTTTAGGGGAGATTAGAG+GGG 0.455078 5_2:-69552882 Msa0784830:three_prime_UTR
GTCTGACCTCGACTTAAATC+TGG 0.455131 5_2:-69552851 Msa0784830:three_prime_UTR
ACTTCGTGCAGGTATTCAAC+TGG 0.457179 5_2:-69555973 Msa0784830:intron
AGCAAATGATTGCGGACAAA+AGG 0.457637 5_2:+69552988 None:intergenic
ATGGAATGAGAATAAATTCA+TGG 0.457994 5_2:+69552957 None:intergenic
AACATCATCAACATATTTGT+AGG 0.458717 5_2:+69553621 None:intergenic
AATGACACATCTATTGGCCT+TGG 0.461549 5_2:-69553653 Msa0784830:CDS
CCTTCCCAAAATGACCTCAT+TGG 0.463208 5_2:-69553536 Msa0784830:CDS
ATGACGCGCTCCGCTTGGTC+AGG 0.463914 5_2:+69557160 None:intergenic
GTTTCAAACAATTTATCACT+TGG 0.476789 5_2:-69555829 Msa0784830:CDS
TTGACCCAGACAACAAAATT+GGG 0.481778 5_2:-69553585 Msa0784830:CDS
CGGATATCGACGGTTCCGTC+GGG 0.482652 5_2:+69557112 None:intergenic
TTGTGAAATTTCTCAAAACA+TGG 0.492166 5_2:-69553152 Msa0784830:three_prime_UTR
CTGAATCGAAGCACCGATCA+TGG 0.495976 5_2:-69557287 Msa0784830:exon
CACAAGGACACAGCTCAGCC+TGG 0.504225 5_2:-69553251 Msa0784830:CDS
AATCCCAAGGAAGCTATAGT+TGG 0.505204 5_2:-69556084 Msa0784830:CDS
TCCATCCCTTCTATATCAGA+TGG 0.510316 5_2:+69553682 None:intergenic
AATTCCTTTGGATCTTCGTA+TGG 0.511279 5_2:-69555776 Msa0784830:CDS
GGTGGCAAATAAAGAATGCT+AGG 0.512959 5_2:+69557340 None:intergenic
TGTCAACAGTCAAATGTATT+GGG 0.515694 5_2:+69555890 None:intergenic
GACCAAGCGGAGCGCGTCAT+CGG 0.516314 5_2:-69557157 Msa0784830:CDS
GACGGTTCCGTCGGGGAGAA+CGG 0.516476 5_2:+69557120 None:intergenic
AACAGTCAAATGTATTGGGT+TGG 0.517495 5_2:+69555894 None:intergenic
CCCATCTGATATAGAAGGGA+TGG 0.517833 5_2:-69553683 Msa0784830:CDS
CTTCTTCCCAAACCTTATCC+GGG 0.521911 5_2:-69557234 Msa0784830:CDS
ACGGATATCGACGGTTCCGT+CGG 0.524689 5_2:+69557111 None:intergenic
ATGGATTAATGCACTGCCAC+CGG 0.529881 5_2:+69555939 None:intergenic
TTCCCAAACCTTATCCGGGA+AGG 0.531499 5_2:-69557230 Msa0784830:CDS
TGCCTAGGTCTCTTTATCAG+TGG 0.535272 5_2:-69553066 Msa0784830:three_prime_UTR
CGCGTCATCGGAACACTCCT+CGG 0.535274 5_2:-69557145 Msa0784830:CDS
CAAGGATCTATTAGGAAGGA+GGG 0.543972 5_2:-69552905 Msa0784830:three_prime_UTR
CTCGGCTCCGTTCTCCCCGA+CGG 0.546112 5_2:-69557127 Msa0784830:CDS
CCATCCCTTCTATATCAGAT+GGG 0.557710 5_2:+69553683 None:intergenic
GAAGAAAGCACGAGAATCGA+TGG 0.563630 5_2:+69557319 None:intergenic
CAAATATGTTGATGATGTTG+TGG 0.577796 5_2:-69553617 Msa0784830:CDS
TGATCGGTGCTTCGATTCAG+AGG 0.580372 5_2:+69557290 None:intergenic
CACAGGATTTGCAGATGGAG+AGG 0.582511 5_2:-69555869 Msa0784830:CDS
CCAAGGAAGCTATAGTTGGA+TGG 0.584918 5_2:-69556080 Msa0784830:intron
AAATGTATATCAGATGTTGT+AGG 0.590500 5_2:-69553562 Msa0784830:CDS
GTTGACACAGGATTTGCAGA+TGG 0.595147 5_2:-69555874 Msa0784830:CDS
ATGGTTGAAGCTGAGCGCAT+TGG 0.598696 5_2:-69555757 Msa0784830:CDS
ACAAGGATCTATTAGGAAGG+AGG 0.605845 5_2:-69552906 Msa0784830:three_prime_UTR
AAATCCCATCTGATATAGAA+GGG 0.606690 5_2:-69553687 Msa0784830:CDS
GTGGCAAATAAAGAATGCTA+GGG 0.616564 5_2:+69557341 None:intergenic
ACAGGATTTGCAGATGGAGA+GGG 0.622352 5_2:-69555868 Msa0784830:CDS
AAGCTCATCAAATGCCAATG+AGG 0.623144 5_2:+69553522 None:intergenic
TGTCCGTCGTCCTGACCAAG+CGG 0.631366 5_2:-69557170 Msa0784830:CDS
CGTCGGGGAGAACGGAGCCG+AGG 0.634190 5_2:+69557128 None:intergenic
AACCACTGATAAAGAGACCT+AGG 0.636019 5_2:+69553064 None:intergenic
AAGCAACCAGATTTAAGTCG+AGG 0.636056 5_2:+69552845 None:intergenic
GCATACTTCACACAAGCACA+TGG 0.639897 5_2:+69552938 None:intergenic
ATACATTTGACTGTTGACAC+AGG 0.640476 5_2:-69555886 Msa0784830:CDS
TCAACCATACGAAGATCCAA+AGG 0.640847 5_2:+69555772 None:intergenic
GGCCAATAGATGTGTCATTG+AGG 0.644097 5_2:+69553657 None:intergenic
TATGTTGATGATGTTGTGGA+AGG 0.648589 5_2:-69553613 Msa0784830:CDS
TGAACAAGGATCTATTAGGA+AGG 0.652733 5_2:-69552909 Msa0784830:three_prime_UTR
TAGGAAGGAGGGGTCTTTAG+GGG 0.659827 5_2:-69552894 Msa0784830:three_prime_UTR
GCTCCGCTTGGTCAGGACGA+CGG 0.661779 5_2:+69557167 None:intergenic
AAGTATGCAACACATGAACA+AGG 0.662030 5_2:-69552923 Msa0784830:three_prime_UTR
TTTGTAGGTGTCATCAACCA+AGG 0.664422 5_2:+69553636 None:intergenic
AAGGATCTATTAGGAAGGAG+GGG 0.668102 5_2:-69552904 Msa0784830:three_prime_UTR
CGTCGCACAGCAAATGATTG+CGG 0.681068 5_2:+69552980 None:intergenic
TGATCAACGGACTCATTGTG+CGG 0.684945 5_2:+69557073 None:intergenic
GGGATAGTAACATATTATGG+TGG 0.686225 5_2:+69556118 None:intergenic
ATGTTGATGATGTTGTGGAA+GGG 0.687818 5_2:-69553612 Msa0784830:CDS
CAGATGTTGAAGATAACGAG+AGG 0.689403 5_2:+69557202 None:intergenic
ACTGGTCTTGGAGTAACCGG+TGG 0.692326 5_2:-69555955 Msa0784830:CDS
GTATGAATTACGGATATCGA+CGG 0.694472 5_2:+69557102 None:intergenic
TGCTTCGATTCAGAGGTGTG+AGG 0.706009 5_2:+69557297 None:intergenic
ATTATGTGATCAAGTGAACA+AGG 0.707464 5_2:-69557402 None:intergenic
GGATATCGACGGTTCCGTCG+GGG 0.709050 5_2:+69557113 None:intergenic
TATATTTATCTAGCATCACA+AGG 0.712944 5_2:-69553267 Msa0784830:CDS
GAAAGCACGAGAATCGATGG+TGG 0.727769 5_2:+69557322 None:intergenic
AATCGAAGCACCGATCATGG+CGG 0.745697 5_2:-69557284 Msa0784830:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTAATTTAAAATGAAAATT+TGG - chr5_2:69553665-69553684 Msa0784830:CDS 10.0%
!!! TTTCATTTACTTTTATTAAT+AGG - chr5_2:69554074-69554093 Msa0784830:intron 10.0%
!! GAATAAATTTAATAAATTGT+AGG - chr5_2:69556800-69556819 Msa0784830:intron 10.0%
!! ATAAATTTAATAAATTGTAG+GGG - chr5_2:69556802-69556821 Msa0784830:intron 10.0%
!! TAGATTGATATACATATATT+TGG - chr5_2:69553885-69553904 Msa0784830:intron 15.0%
!! TGATTATCTATAAATACAAA+AGG - chr5_2:69554030-69554049 Msa0784830:intron 15.0%
!!! CTTGTTTTGTAAAAAAAATT+TGG - chr5_2:69554196-69554215 Msa0784830:intron 15.0%
!!! TTCATTTAGTGATTTTTTTA+TGG - chr5_2:69554828-69554847 Msa0784830:intron 15.0%
!! TTAAAAATAATGTAACAACA+TGG - chr5_2:69555187-69555206 Msa0784830:intron 15.0%
!!! ATCATCTTTAAAATAAAACA+TGG + chr5_2:69556161-69556180 None:intergenic 15.0%
!! AAATGGCTTATAAATTATAA+TGG - chr5_2:69556432-69556451 Msa0784830:intron 15.0%
!!! AATTATGAAAATAGTTCTTT+TGG - chr5_2:69556842-69556861 Msa0784830:intron 15.0%
!!! TTAAGGAAAATGTTAAGTTT+TGG - chr5_2:69553476-69553495 Msa0784830:intron 20.0%
!!! TAAGGAAAATGTTAAGTTTT+GGG - chr5_2:69553477-69553496 Msa0784830:intron 20.0%
!!! TTAAAATGAAAATTTGGTGT+TGG - chr5_2:69553671-69553690 Msa0784830:CDS 20.0%
!!! AACTTGATGCATTTTTTAAT+TGG + chr5_2:69553809-69553828 None:intergenic 20.0%
!! TAAAACTGTATATTTGATGT+TGG - chr5_2:69553959-69553978 Msa0784830:intron 20.0%
!!! AGATTTTTAGAAGAAACAAA+TGG + chr5_2:69553986-69554005 None:intergenic 20.0%
!!! CTGTTTTATGTTTTTATCAA+AGG - chr5_2:69554537-69554556 Msa0784830:intron 20.0%
!! AGAAATATCCTAAAATATGT+GGG + chr5_2:69556005-69556024 None:intergenic 20.0%
!! AAGAAATATCCTAAAATATG+TGG + chr5_2:69556006-69556025 None:intergenic 20.0%
!!! AGTTGCTTTAGAATAAAATT+AGG - chr5_2:69556034-69556053 Msa0784830:intron 20.0%
!! TTAGAATAAAATTAGGTGTT+TGG - chr5_2:69556041-69556060 Msa0784830:intron 20.0%
!! ATTTATGTATCACTTTATCA+TGG - chr5_2:69556364-69556383 Msa0784830:intron 20.0%
!!! TATAATTTGTAGCTTTGAAA+TGG - chr5_2:69556415-69556434 Msa0784830:intron 20.0%
!!! TTGCAGGTAATTTTAATTTT+GGG - chr5_2:69556747-69556766 Msa0784830:intron 20.0%
!!! AATAAATGCAATTTTGCTTA+CGG - chr5_2:69557049-69557068 Msa0784830:intron 20.0%
! TTCAAATTTCGCTATGTTAT+AGG + chr5_2:69553354-69553373 None:intergenic 25.0%
!! AAGGAAAATGTTAAGTTTTG+GGG - chr5_2:69553478-69553497 Msa0784830:intron 25.0%
!! AAATGCATCAAGTTTAAGTT+TGG - chr5_2:69553815-69553834 Msa0784830:intron 25.0%
!! CTTTTATTAATAGGTTGCTT+TGG - chr5_2:69554083-69554102 Msa0784830:intron 25.0%
!!! GTTTGAAACATATGCTTTTA+TGG + chr5_2:69554394-69554413 None:intergenic 25.0%
! GTTTCAAACAATTTATCACT+TGG - chr5_2:69554405-69554424 Msa0784830:intron 25.0%
!! TTTTTCCTGATTGATGTATT+AGG - chr5_2:69554705-69554724 Msa0784830:intron 25.0%
! CTGGATTTAAGTAAAGTATA+TGG + chr5_2:69554775-69554794 None:intergenic 25.0%
! CATATACTTTACTTAAATCC+AGG - chr5_2:69554773-69554792 Msa0784830:intron 25.0%
! ATTTACAGAAAGAATGATAC+TGG - chr5_2:69554905-69554924 Msa0784830:intron 25.0%
! ATATCCATATACTTTGCTTA+AGG - chr5_2:69555016-69555035 Msa0784830:intron 25.0%
! TAAAAAATTGTATTGGAGGA+GGG + chr5_2:69555258-69555277 None:intergenic 25.0%
! GAACTAAAAAATTGTATTGG+AGG + chr5_2:69555262-69555281 None:intergenic 25.0%
! GAGGAACTAAAAAATTGTAT+TGG + chr5_2:69555265-69555284 None:intergenic 25.0%
!! TCTTTTTGTATTTCTTCACT+TGG - chr5_2:69555463-69555482 Msa0784830:intron 25.0%
! AAGACAAAAATAATGACACT+TGG + chr5_2:69555602-69555621 None:intergenic 25.0%
! CATGAAAAGTAAAACTTTGA+TGG - chr5_2:69555823-69555842 Msa0784830:CDS 25.0%
! CTTTATAGAAGAAATGTCTT+GGG - chr5_2:69556233-69556252 Msa0784830:intron 25.0%
! AAAGATTGATTGTTAACTTC+TGG - chr5_2:69556485-69556504 Msa0784830:intron 25.0%
! AACATCATCAACATATTTGT+AGG + chr5_2:69556616-69556635 None:intergenic 25.0%
! AAATGTATATCAGATGTTGT+AGG - chr5_2:69556672-69556691 Msa0784830:intron 25.0%
!!! CTTGCAGGTAATTTTAATTT+TGG - chr5_2:69556746-69556765 Msa0784830:intron 25.0%
!!! TGCAGGTAATTTTAATTTTG+GGG - chr5_2:69556748-69556767 Msa0784830:intron 25.0%
!! TTAAAGAACACATTTTCTCA+GGG - chr5_2:69556893-69556912 Msa0784830:intron 25.0%
! TATATTTATCTAGCATCACA+AGG - chr5_2:69556967-69556986 Msa0784830:intron 25.0%
!!! GTTTTGAGAAATTTCACAAA+TGG + chr5_2:69557081-69557100 None:intergenic 25.0%
! TTGTGAAATTTCTCAAAACA+TGG - chr5_2:69557082-69557101 Msa0784830:CDS 25.0%
!! ACATCAGTATTTTGTAATAC+TGG - chr5_2:69557106-69557125 Msa0784830:CDS 25.0%
!! ATAATGCAAATTTTATTGCG+TGG - chr5_2:69557130-69557149 Msa0784830:CDS 25.0%
!! TAATGCAAATTTTATTGCGT+GGG - chr5_2:69557131-69557150 Msa0784830:CDS 25.0%
!! GTAATTTCATTTTATTGCCT+AGG - chr5_2:69557153-69557172 Msa0784830:CDS 25.0%
! ATGGAATGAGAATAAATTCA+TGG + chr5_2:69557280-69557299 None:intergenic 25.0%
AAACAAATGCAATCTCAGAA+AGG + chr5_2:69553212-69553231 None:intergenic 30.0%
TATGAAGCAATGTTGTTGAA+TGG - chr5_2:69553317-69553336 Msa0784830:intron 30.0%
GGAACTGTACATATTTCTTA+AGG - chr5_2:69553459-69553478 Msa0784830:intron 30.0%
! TCTGTAGATTAATGCGATTT+TGG - chr5_2:69553505-69553524 Msa0784830:CDS 30.0%
!! TGGAGTTCAAAATGCTATTT+TGG - chr5_2:69553542-69553561 Msa0784830:CDS 30.0%
!!! TGGCAGATTACTACTTTTTT+TGG - chr5_2:69553738-69553757 Msa0784830:intron 30.0%
GACGAGTTTAGAAAAATCAT+GGG + chr5_2:69553785-69553804 None:intergenic 30.0%
TGACGAGTTTAGAAAAATCA+TGG + chr5_2:69553786-69553805 None:intergenic 30.0%
CAAAACAAGCTTAAAAGAAC+TGG + chr5_2:69554185-69554204 None:intergenic 30.0%
CTTCTCGAGAATAAAATTCA+TGG + chr5_2:69554317-69554336 None:intergenic 30.0%
TGTCAACAGTCAAATGTATT+GGG + chr5_2:69554347-69554366 None:intergenic 30.0%
ACAGTTTCAAGAAATTCCTT+TGG - chr5_2:69554446-69554465 Msa0784830:intron 30.0%
ATCACACATCGATCTATTAA+AGG + chr5_2:69554657-69554676 None:intergenic 30.0%
TATGTCCTAATACATCAATC+AGG + chr5_2:69554713-69554732 None:intergenic 30.0%
! TAGCTAGTGTCATTGTTATT+AGG - chr5_2:69554953-69554972 Msa0784830:intron 30.0%
AAAGCCTTAAGCAAAGTATA+TGG + chr5_2:69555023-69555042 None:intergenic 30.0%
CTAAAAAATTGTATTGGAGG+AGG + chr5_2:69555259-69555278 None:intergenic 30.0%
!!! TTTTTTAGTTCCTCCAAATG+AGG - chr5_2:69555271-69555290 Msa0784830:intron 30.0%
TGGAAGTAATAGAGGAAAAT+GGG + chr5_2:69555344-69555363 None:intergenic 30.0%
! TTTTGTATTTCTTCACTTGG+TGG - chr5_2:69555466-69555485 Msa0784830:intron 30.0%
! ATTTTCCTTTCCTTGTGAAA+CGG - chr5_2:69555699-69555718 Msa0784830:intron 30.0%
ATGAATCTGAGTAACATGTT+TGG - chr5_2:69555857-69555876 Msa0784830:CDS 30.0%
TGAATCTGAGTAACATGTTT+GGG - chr5_2:69555858-69555877 Msa0784830:CDS 30.0%
ATGATTCGTTTATTTGCCTT+TGG - chr5_2:69555910-69555929 Msa0784830:CDS 30.0%
CATATCGTGATAAAAATGTG+GGG + chr5_2:69555941-69555960 None:intergenic 30.0%
GCATATCGTGATAAAAATGT+GGG + chr5_2:69555942-69555961 None:intergenic 30.0%
TGCATATCGTGATAAAAATG+TGG + chr5_2:69555943-69555962 None:intergenic 30.0%
TTATCACGATATGCAATGTT+TGG - chr5_2:69555948-69555967 Msa0784830:CDS 30.0%
ATGCAATGTTTGGTACAATT+TGG - chr5_2:69555958-69555977 Msa0784830:CDS 30.0%
! GTATAAGTCCCACATATTTT+AGG - chr5_2:69555994-69556013 Msa0784830:intron 30.0%
CCAAGACATTTCTTCTATAA+AGG + chr5_2:69556235-69556254 None:intergenic 30.0%
CCTTTATAGAAGAAATGTCT+TGG - chr5_2:69556232-69556251 Msa0784830:intron 30.0%
ATGTATCTATTAGTTGAGAG+TGG - chr5_2:69556267-69556286 Msa0784830:intron 30.0%
TTATACTGACACAACACTAA+TGG + chr5_2:69556400-69556419 None:intergenic 30.0%
CTTCAGATTATCAACTGTAA+AGG + chr5_2:69556511-69556530 None:intergenic 30.0%
AAAATCCCATCTGATATAGA+AGG - chr5_2:69556546-69556565 Msa0784830:intron 30.0%
AAATCCCATCTGATATAGAA+GGG - chr5_2:69556547-69556566 Msa0784830:intron 30.0%
!! CAAATATGTTGATGATGTTG+TGG - chr5_2:69556617-69556636 Msa0784830:intron 30.0%
!! ATTTCCCAATTTTGTTGTCT+GGG + chr5_2:69556656-69556675 None:intergenic 30.0%
AACATAACAAGCTGTTCTTA+CGG + chr5_2:69556868-69556887 None:intergenic 30.0%
! GTTAAAGAACACATTTTCTC+AGG - chr5_2:69556892-69556911 Msa0784830:intron 30.0%
! TGTCATATCTTTGAAAAACG+TGG - chr5_2:69557213-69557232 Msa0784830:CDS 30.0%
! ACTTAAATCTGGTTGCTTTA+CGG - chr5_2:69557394-69557413 Msa0784830:five_prime_UTR 30.0%
GTGGCAAATAAAGAATGCTA+GGG + chr5_2:69552896-69552915 None:intergenic 35.0%
GTATGAATTACGGATATCGA+CGG + chr5_2:69553135-69553154 None:intergenic 35.0%
GAGAGTAAAAACCTGATCAA+CGG + chr5_2:69553177-69553196 None:intergenic 35.0%
GTTAGATTAACCACAGATTG+TGG + chr5_2:69553432-69553451 None:intergenic 35.0%
TCTGTGGTTAATCTAACAGA+TGG - chr5_2:69553435-69553454 Msa0784830:intron 35.0%
ATTTGAATTAGCAGCGAGTA+TGG + chr5_2:69553620-69553639 None:intergenic 35.0%
!! TGAAAATTTGGTGTTGGATG+TGG - chr5_2:69553677-69553696 Msa0784830:CDS 35.0%
TACATACATCGTCACCAATT+TGG - chr5_2:69553707-69553726 Msa0784830:CDS 35.0%
ACATACATCGTCACCAATTT+GGG - chr5_2:69553708-69553727 Msa0784830:CDS 35.0%
!! CATATATTTGGTGTAGCATG+TGG - chr5_2:69553897-69553916 Msa0784830:intron 35.0%
GGGATAGTAACATATTATGG+TGG + chr5_2:69554119-69554138 None:intergenic 35.0%
GGTGGGATAGTAACATATTA+TGG + chr5_2:69554122-69554141 None:intergenic 35.0%
! AATGAGTTTTTACTTCGTGC+AGG - chr5_2:69554250-69554269 Msa0784830:intron 35.0%
AACAGTCAAATGTATTGGGT+TGG + chr5_2:69554343-69554362 None:intergenic 35.0%
GTGTCAACAGTCAAATGTAT+TGG + chr5_2:69554348-69554367 None:intergenic 35.0%
ATACATTTGACTGTTGACAC+AGG - chr5_2:69554348-69554367 Msa0784830:intron 35.0%
AATTCCTTTGGATCTTCGTA+TGG - chr5_2:69554458-69554477 Msa0784830:intron 35.0%
! CATTGGATGTACGTATTGAT+TGG - chr5_2:69554494-69554513 Msa0784830:intron 35.0%
TGCTTGCTTTCATCAATTCA+TGG - chr5_2:69554599-69554618 Msa0784830:intron 35.0%
TCGATGTGTGATATTGTACT+AGG - chr5_2:69554665-69554684 Msa0784830:intron 35.0%
GTGTGATATTGTACTAGGTT+AGG - chr5_2:69554670-69554689 Msa0784830:intron 35.0%
AATACTAAACCCTCCTCATT+TGG + chr5_2:69555287-69555306 None:intergenic 35.0%
AGTAATAGAGGAAAATGGGA+GGG + chr5_2:69555340-69555359 None:intergenic 35.0%
AAGTAATAGAGGAAAATGGG+AGG + chr5_2:69555341-69555360 None:intergenic 35.0%
GTGGAAGTAATAGAGGAAAA+TGG + chr5_2:69555345-69555364 None:intergenic 35.0%
!! TTAGGCTTTGTTTGAGAGTT+TGG + chr5_2:69555410-69555429 None:intergenic 35.0%
AACTCTCAAACAAAGCCTAA+AGG - chr5_2:69555410-69555429 Msa0784830:intron 35.0%
AAGCCTAAAGGTCTAAATCT+AGG - chr5_2:69555422-69555441 Msa0784830:intron 35.0%
!!! CTTCACTTGGTGGTTTTTTA+TGG - chr5_2:69555476-69555495 Msa0784830:intron 35.0%
TACAGAAAGAATGATACCTG+AGG - chr5_2:69555556-69555575 Msa0784830:intron 35.0%
!!! TCAGTTTTTGGTCATGATCA+AGG + chr5_2:69555642-69555661 None:intergenic 35.0%
ATCTGTGTCTCGTTTGTATT+TGG - chr5_2:69555661-69555680 Msa0784830:intron 35.0%
TCTGTGTCTCGTTTGTATTT+GGG - chr5_2:69555662-69555681 Msa0784830:intron 35.0%
TCGTTTGTATTTGGGAAAAC+TGG - chr5_2:69555670-69555689 Msa0784830:intron 35.0%
! TTTTCCTTTCCTTGTGAAAC+GGG - chr5_2:69555700-69555719 Msa0784830:intron 35.0%
CACAAAGTGTATTTGCAATC+AGG - chr5_2:69555763-69555782 Msa0784830:CDS 35.0%
TTCGTTTATTTGCCTTTGGA+AGG - chr5_2:69555914-69555933 Msa0784830:CDS 35.0%
!! TTTGGTACAATTTGGTGCAT+TGG - chr5_2:69555966-69555985 Msa0784830:intron 35.0%
!! TTGGTACAATTTGGTGCATT+GGG - chr5_2:69555967-69555986 Msa0784830:intron 35.0%
TTACTCTTAAAACCATCTGG+AGG + chr5_2:69556067-69556086 None:intergenic 35.0%
GTCTTACTCTTAAAACCATC+TGG + chr5_2:69556070-69556089 None:intergenic 35.0%
!! TCTCTTTTAAAGGGGTTTTG+AGG - chr5_2:69556096-69556115 Msa0784830:CDS 35.0%
!! CTCTTTTAAAGGGGTTTTGA+GGG - chr5_2:69556097-69556116 Msa0784830:CDS 35.0%
!! TATGTTGATGATGTTGTGGA+AGG - chr5_2:69556621-69556640 Msa0784830:intron 35.0%
!! ATGTTGATGATGTTGTGGAA+GGG - chr5_2:69556622-69556641 Msa0784830:intron 35.0%
TTGACCCAGACAACAAAATT+GGG - chr5_2:69556649-69556668 Msa0784830:intron 35.0%
!! CATTTCCCAATTTTGTTGTC+TGG + chr5_2:69556657-69556676 None:intergenic 35.0%
!! AATGCCAATGAGGTCATTTT+GGG + chr5_2:69556705-69556724 None:intergenic 35.0%
! AAATGCCAATGAGGTCATTT+TGG + chr5_2:69556706-69556725 None:intergenic 35.0%
! ACACATTTTCTCAGGGTTTT+TGG - chr5_2:69556900-69556919 Msa0784830:intron 35.0%
AAGTATGCAACACATGAACA+AGG - chr5_2:69557311-69557330 Msa0784830:five_prime_UTR 35.0%
CACATGAACAAGGATCTATT+AGG - chr5_2:69557321-69557340 Msa0784830:five_prime_UTR 35.0%
TGAACAAGGATCTATTAGGA+AGG - chr5_2:69557325-69557344 Msa0784830:five_prime_UTR 35.0%
GGTGGCAAATAAAGAATGCT+AGG + chr5_2:69552897-69552916 None:intergenic 40.0%
TCTTCTTCCCAAACCTTATC+CGG - chr5_2:69552999-69553018 Msa0784830:three_prime_UTR 40.0%
CAGATGTTGAAGATAACGAG+AGG + chr5_2:69553035-69553054 None:intergenic 40.0%
ATCTCAGAAAGGAATGCATG+TGG + chr5_2:69553201-69553220 None:intergenic 40.0%
AAATTCCGCTAGCTATGTCA+CGG + chr5_2:69553392-69553411 None:intergenic 40.0%
!!! CTGCTATTTTCCACAATCTG+TGG - chr5_2:69553419-69553438 Msa0784830:intron 40.0%
GTGGTTAATCTAACAGATGG+CGG - chr5_2:69553438-69553457 Msa0784830:intron 40.0%
! TTTTGGCAAAAGCCACACTA+TGG - chr5_2:69553522-69553541 Msa0784830:CDS 40.0%
! GCATTTTGAACTCCATAGTG+TGG + chr5_2:69553537-69553556 None:intergenic 40.0%
CATACATCGTCACCAATTTG+GGG - chr5_2:69553709-69553728 Msa0784830:CDS 40.0%
ATACATCGTCACCAATTTGG+GGG - chr5_2:69553710-69553729 Msa0784830:CDS 40.0%
TCACCAATTTGGGGGAATTA+TGG - chr5_2:69553718-69553737 Msa0784830:CDS 40.0%
!!! CTTGGGATTCACTTTTTGGT+GGG + chr5_2:69554139-69554158 None:intergenic 40.0%
!! CTTCCTTGGGATTCACTTTT+TGG + chr5_2:69554143-69554162 None:intergenic 40.0%
AATCCCAAGGAAGCTATAGT+TGG - chr5_2:69554150-69554169 Msa0784830:intron 40.0%
CATCCAACTATAGCTTCCTT+GGG + chr5_2:69554156-69554175 None:intergenic 40.0%
TCAACCATACGAAGATCCAA+AGG + chr5_2:69554465-69554484 None:intergenic 40.0%
CAGAAAGAATGATACTGGAC+TGG - chr5_2:69554910-69554929 Msa0784830:intron 40.0%
! AAAGAATGATACTGGACTGG+AGG - chr5_2:69554913-69554932 Msa0784830:intron 40.0%
GTTATTAGGACAGAGTGACT+TGG - chr5_2:69554967-69554986 Msa0784830:intron 40.0%
!! TAAGGCTTTGTTTGCGAGTT+TGG - chr5_2:69555034-69555053 Msa0784830:intron 40.0%
TTTGAGGGGTGGAAAATATG+AGG - chr5_2:69555077-69555096 Msa0784830:intron 40.0%
TTGAGGGGTGGAAAATATGA+GGG - chr5_2:69555078-69555097 Msa0784830:intron 40.0%
! TTGTATTGGAGGAGGGTTTT+GGG + chr5_2:69555251-69555270 None:intergenic 40.0%
! ATTGTATTGGAGGAGGGTTT+TGG + chr5_2:69555252-69555271 None:intergenic 40.0%
! TTTAGTTCCTCCAAATGAGG+AGG - chr5_2:69555274-69555293 Msa0784830:intron 40.0%
TTAGTTCCTCCAAATGAGGA+GGG - chr5_2:69555275-69555294 Msa0784830:intron 40.0%
GTAATAGAGGAAAATGGGAG+GGG + chr5_2:69555339-69555358 None:intergenic 40.0%
TGAGCAAGTGGAAGTAATAG+AGG + chr5_2:69555352-69555371 None:intergenic 40.0%
GGAAAAAAGGAATGAGCAAG+TGG + chr5_2:69555364-69555383 None:intergenic 40.0%
! CTTTGTTTGAGAGTTTGGAG+GGG + chr5_2:69555405-69555424 None:intergenic 40.0%
!! GCTTTGTTTGAGAGTTTGGA+GGG + chr5_2:69555406-69555425 None:intergenic 40.0%
GAGCCTAGATTTAGACCTTT+AGG + chr5_2:69555428-69555447 None:intergenic 40.0%
ATTGTGAATGACATTGCCTC+AGG + chr5_2:69555575-69555594 None:intergenic 40.0%
! ACGAGACACAGATCAGTTTT+TGG + chr5_2:69555654-69555673 None:intergenic 40.0%
CCAAAATATTCAACCTGCAG+CGG + chr5_2:69555740-69555759 None:intergenic 40.0%
! AACATGTTTGGGTTTGTCTC+AGG - chr5_2:69555869-69555888 Msa0784830:CDS 40.0%
!!! TTAAAGGGGTTTTGAGGGAT+TGG - chr5_2:69556102-69556121 Msa0784830:CDS 40.0%
GAAGAGAATACAGAGAGGAA+AGG + chr5_2:69556194-69556213 None:intergenic 40.0%
ACACAGAAGAGAATACAGAG+AGG + chr5_2:69556199-69556218 None:intergenic 40.0%
AAGAAATGTCTTGGGTCTAC+TGG - chr5_2:69556241-69556260 Msa0784830:intron 40.0%
AGAAATGTCTTGGGTCTACT+GGG - chr5_2:69556242-69556261 Msa0784830:intron 40.0%
CCATCCCTTCTATATCAGAT+GGG + chr5_2:69556554-69556573 None:intergenic 40.0%
TCCATCCCTTCTATATCAGA+TGG + chr5_2:69556555-69556574 None:intergenic 40.0%
AGCCTCAATGACACATCTAT+TGG - chr5_2:69556575-69556594 Msa0784830:intron 40.0%
! AATGACACATCTATTGGCCT+TGG - chr5_2:69556581-69556600 Msa0784830:intron 40.0%
! TTTGTAGGTGTCATCAACCA+AGG + chr5_2:69556601-69556620 None:intergenic 40.0%
GTTGACCCAGACAACAAAAT+TGG - chr5_2:69556648-69556667 Msa0784830:intron 40.0%
!! CAATGAGGTCATTTTGGGAA+GGG + chr5_2:69556700-69556719 None:intergenic 40.0%
AAGCTCATCAAATGCCAATG+AGG + chr5_2:69556715-69556734 None:intergenic 40.0%
!!! ATTTTGGGGTGATGTTGTAG+TGG - chr5_2:69556762-69556781 Msa0784830:intron 40.0%
!!! AAGAGTGTCTCATGGTTTTC+AGG - chr5_2:69556929-69556948 Msa0784830:intron 40.0%
!! TTTTCAGGATCACTTGCTCA+TGG - chr5_2:69556944-69556963 Msa0784830:intron 40.0%
!! CAGTGTTCAATTTTTCAGCC+AGG + chr5_2:69557004-69557023 None:intergenic 40.0%
AACCACTGATAAAGAGACCT+AGG + chr5_2:69557173-69557192 None:intergenic 40.0%
AGCAAATGATTGCGGACAAA+AGG + chr5_2:69557249-69557268 None:intergenic 40.0%
ACAAGGATCTATTAGGAAGG+AGG - chr5_2:69557328-69557347 Msa0784830:five_prime_UTR 40.0%
CAAGGATCTATTAGGAAGGA+GGG - chr5_2:69557329-69557348 Msa0784830:five_prime_UTR 40.0%
AAGGATCTATTAGGAAGGAG+GGG - chr5_2:69557330-69557349 Msa0784830:five_prime_UTR 40.0%
AAGCAACCAGATTTAAGTCG+AGG + chr5_2:69557392-69557411 None:intergenic 40.0%
! GAAGAAAGCACGAGAATCGA+TGG + chr5_2:69552918-69552937 None:intergenic 45.0%
CTTCTTCCCAAACCTTATCC+GGG - chr5_2:69553000-69553019 Msa0784830:three_prime_UTR 45.0%
AACCTTCCCGGATAAGGTTT+GGG + chr5_2:69553009-69553028 None:intergenic 45.0%
GCGGAACAGCGTATGAATTA+CGG + chr5_2:69553145-69553164 None:intergenic 45.0%
! TGATCAACGGACTCATTGTG+CGG + chr5_2:69553164-69553183 None:intergenic 45.0%
TTGTTCCGTGACATAGCTAG+CGG - chr5_2:69553384-69553403 Msa0784830:intron 45.0%
! TTTTGGCAAAAGCCACACTC+TGG - chr5_2:69553559-69553578 Msa0784830:CDS 45.0%
TTTGTTGAAGCTCCAGAGTG+TGG + chr5_2:69553574-69553593 None:intergenic 45.0%
CTGGAGCTTCAACAAACTTG+CGG - chr5_2:69553578-69553597 Msa0784830:CDS 45.0%
CTGCCATAATTCCCCCAAAT+TGG + chr5_2:69553724-69553743 None:intergenic 45.0%
!!! CCTTGGGATTCACTTTTTGG+TGG + chr5_2:69554140-69554159 None:intergenic 45.0%
CCACCAAAAAGTGAATCCCA+AGG - chr5_2:69554137-69554156 Msa0784830:intron 45.0%
CCATCCAACTATAGCTTCCT+TGG + chr5_2:69554157-69554176 None:intergenic 45.0%
CCAAGGAAGCTATAGTTGGA+TGG - chr5_2:69554154-69554173 Msa0784830:intron 45.0%
ACTTCGTGCAGGTATTCAAC+TGG - chr5_2:69554261-69554280 Msa0784830:intron 45.0%
! TGCAGGTATTCAACTGGTCT+TGG - chr5_2:69554267-69554286 Msa0784830:intron 45.0%
!! TCAACTGGTCTTGGAGTAAC+CGG - chr5_2:69554276-69554295 Msa0784830:intron 45.0%
! ATGGATTAATGCACTGCCAC+CGG + chr5_2:69554298-69554317 None:intergenic 45.0%
GTTGACACAGGATTTGCAGA+TGG - chr5_2:69554360-69554379 Msa0784830:intron 45.0%
ACAGGATTTGCAGATGGAGA+GGG - chr5_2:69554366-69554385 Msa0784830:intron 45.0%
! TGATGATGCAAAAGAGAGCC+TGG + chr5_2:69554794-69554813 None:intergenic 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG - chr5_2:69555038-69555057 Msa0784830:intron 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG - chr5_2:69555039-69555058 Msa0784830:intron 45.0%
! TGTATTGGAGGAGGGTTTTG+GGG + chr5_2:69555250-69555269 None:intergenic 45.0%
ACTAAACCCTCCTCATTTGG+AGG + chr5_2:69555284-69555303 None:intergenic 45.0%
TTTGAGAGTTTGGAGGGGAA+GGG + chr5_2:69555400-69555419 None:intergenic 45.0%
!! GGCTTTGTTTGAGAGTTTGG+AGG + chr5_2:69555407-69555426 None:intergenic 45.0%
AAGTCCCGTTTCACAAGGAA+AGG + chr5_2:69555707-69555726 None:intergenic 45.0%
TTTCCTTGTGAAACGGGACT+TGG - chr5_2:69555706-69555725 Msa0784830:intron 45.0%
!! CCGCTGCAGGTTGAATATTT+TGG - chr5_2:69555737-69555756 Msa0784830:intron 45.0%
AAAATGTGGGGACCTTCCAA+AGG + chr5_2:69555929-69555948 None:intergenic 45.0%
!! GTACAATTTGGTGCATTGGG+TGG - chr5_2:69555970-69555989 Msa0784830:intron 45.0%
!!! GGTTTTAAGAGTAAGACGCG+CGG - chr5_2:69556073-69556092 Msa0784830:intron 45.0%
GAAATGTCTTGGGTCTACTG+GGG - chr5_2:69556243-69556262 Msa0784830:intron 45.0%
CCCATCTGATATAGAAGGGA+TGG - chr5_2:69556551-69556570 Msa0784830:intron 45.0%
! GGCCAATAGATGTGTCATTG+AGG + chr5_2:69556580-69556599 None:intergenic 45.0%
!! CCAATGAGGTCATTTTGGGA+AGG + chr5_2:69556701-69556720 None:intergenic 45.0%
CCTTCCCAAAATGACCTCAT+TGG - chr5_2:69556698-69556717 Msa0784830:intron 45.0%
AACCATGAGACACTCTTGTC+AGG + chr5_2:69556926-69556945 None:intergenic 45.0%
TGCCTAGGTCTCTTTATCAG+TGG - chr5_2:69557168-69557187 Msa0784830:CDS 45.0%
GCATACTTCACACAAGCACA+TGG + chr5_2:69557299-69557318 None:intergenic 45.0%
ATTAGGAAGGAGGGGTCTTT+AGG - chr5_2:69557338-69557357 Msa0784830:five_prime_UTR 45.0%
TTAGGAAGGAGGGGTCTTTA+GGG - chr5_2:69557339-69557358 Msa0784830:five_prime_UTR 45.0%
! GGTCTTTAGGGGAGATTAGA+GGG - chr5_2:69557351-69557370 Msa0784830:five_prime_UTR 45.0%
! GTCTTTAGGGGAGATTAGAG+GGG - chr5_2:69557352-69557371 Msa0784830:five_prime_UTR 45.0%
GTCTGACCTCGACTTAAATC+TGG - chr5_2:69557383-69557402 Msa0784830:five_prime_UTR 45.0%
!!! ACTTTTAAATAAAAAAAATT+TGG - chr5_2:69553853-69553872 Msa0784830:intron 5.0%
!! AATAAATTTAATAAATTGTA+GGG - chr5_2:69556801-69556820 Msa0784830:intron 5.0%
! GAAAGCACGAGAATCGATGG+TGG + chr5_2:69552915-69552934 None:intergenic 50.0%
! TGCTTCGATTCAGAGGTGTG+AGG + chr5_2:69552940-69552959 None:intergenic 50.0%
! TGATCGGTGCTTCGATTCAG+AGG + chr5_2:69552947-69552966 None:intergenic 50.0%
!! CTGAATCGAAGCACCGATCA+TGG - chr5_2:69552947-69552966 Msa0784830:three_prime_UTR 50.0%
!! AATCGAAGCACCGATCATGG+CGG - chr5_2:69552950-69552969 Msa0784830:three_prime_UTR 50.0%
TTCCCAAACCTTATCCGGGA+AGG - chr5_2:69553004-69553023 Msa0784830:three_prime_UTR 50.0%
GAACCTTCCCGGATAAGGTT+TGG + chr5_2:69553010-69553029 None:intergenic 50.0%
AGGATGAACCTTCCCGGATA+AGG + chr5_2:69553015-69553034 None:intergenic 50.0%
AACGAGAGGATGAACCTTCC+CGG + chr5_2:69553021-69553040 None:intergenic 50.0%
GCACAATGAGTCCGTTGATC+AGG - chr5_2:69553163-69553182 Msa0784830:three_prime_UTR 50.0%
CACAGGATTTGCAGATGGAG+AGG - chr5_2:69554365-69554384 Msa0784830:intron 50.0%
ATGGTTGAAGCTGAGCGCAT+TGG - chr5_2:69554477-69554496 Msa0784830:intron 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG - chr5_2:69555037-69555056 Msa0784830:intron 50.0%
!!! GGGTTTTGGGGGGTTTTAGA+GGG + chr5_2:69555238-69555257 None:intergenic 50.0%
!!! AGGGTTTTGGGGGGTTTTAG+AGG + chr5_2:69555239-69555258 None:intergenic 50.0%
!!! TATTGGAGGAGGGTTTTGGG+GGG + chr5_2:69555248-69555267 None:intergenic 50.0%
!! GTATTGGAGGAGGGTTTTGG+GGG + chr5_2:69555249-69555268 None:intergenic 50.0%
! AAATGGGAGGGGAGGGTTTT+GGG + chr5_2:69555328-69555347 None:intergenic 50.0%
! AAAATGGGAGGGGAGGGTTT+TGG + chr5_2:69555329-69555348 None:intergenic 50.0%
TAGAGGAAAATGGGAGGGGA+GGG + chr5_2:69555335-69555354 None:intergenic 50.0%
ATAGAGGAAAATGGGAGGGG+AGG + chr5_2:69555336-69555355 None:intergenic 50.0%
AGGGGAAGGCTTGGGAAAAA+AGG + chr5_2:69555377-69555396 None:intergenic 50.0%
GTTTGAGAGTTTGGAGGGGA+AGG + chr5_2:69555401-69555420 None:intergenic 50.0%
GATCCAAGTCCCGTTTCACA+AGG + chr5_2:69555712-69555731 None:intergenic 50.0%
AATATTCAACCTGCAGCGGC+AGG + chr5_2:69555736-69555755 None:intergenic 50.0%
TTAGGTGTTTGGCCTCCAGA+TGG - chr5_2:69556052-69556071 Msa0784830:intron 50.0%
! AGACGCGCGGTCTCTTTTAA+AGG - chr5_2:69556086-69556105 Msa0784830:CDS 50.0%
! GACGCGCGGTCTCTTTTAAA+GGG - chr5_2:69556087-69556106 Msa0784830:CDS 50.0%
!! ACGCGCGGTCTCTTTTAAAG+GGG - chr5_2:69556088-69556107 Msa0784830:CDS 50.0%
GCTTGTGAATGACAGCTTGC+AGG - chr5_2:69556731-69556750 Msa0784830:intron 50.0%
CGTCGCACAGCAAATGATTG+CGG + chr5_2:69557257-69557276 None:intergenic 50.0%
TAGGAAGGAGGGGTCTTTAG+GGG - chr5_2:69557340-69557359 Msa0784830:five_prime_UTR 50.0%
! GGGTCTTTAGGGGAGATTAG+AGG - chr5_2:69557350-69557369 Msa0784830:five_prime_UTR 50.0%
ACGGATATCGACGGTTCCGT+CGG + chr5_2:69553126-69553145 None:intergenic 55.0%
!! ACTGGTCTTGGAGTAACCGG+TGG - chr5_2:69554279-69554298 Msa0784830:intron 55.0%
! TGATACTGGACTGGAGGCAG+TGG - chr5_2:69554919-69554938 Msa0784830:intron 55.0%
TGTTTGCGAGTTTGGAGGGG+AGG - chr5_2:69555042-69555061 Msa0784830:intron 55.0%
GTTTGCGAGTTTGGAGGGGA+GGG - chr5_2:69555043-69555062 Msa0784830:intron 55.0%
TTTGCGAGTTTGGAGGGGAG+GGG - chr5_2:69555044-69555063 Msa0784830:intron 55.0%
! AGGGGAAGGGAAGGCTTTGA+GGG - chr5_2:69555062-69555081 Msa0784830:intron 55.0%
! AATGGGAGGGGAGGGTTTTG+GGG + chr5_2:69555327-69555346 None:intergenic 55.0%
AGAGTTTGGAGGGGAAGGGA+GGG + chr5_2:69555396-69555415 None:intergenic 55.0%
!! GGCCTGACAAGAGTGTCTCA+TGG - chr5_2:69556921-69556940 Msa0784830:intron 55.0%
GGGGAGATTAGAGGGGATAC+TGG - chr5_2:69557359-69557378 Msa0784830:five_prime_UTR 55.0%
CGCTTACTCGCCGCCATGAT+CGG + chr5_2:69552963-69552982 None:intergenic 60.0%
TGTCCGTCGTCCTGACCAAG+CGG - chr5_2:69553064-69553083 Msa0784830:three_prime_UTR 60.0%
CGCGTCATCGGAACACTCCT+CGG - chr5_2:69553089-69553108 Msa0784830:three_prime_UTR 60.0%
GGATATCGACGGTTCCGTCG+GGG + chr5_2:69553124-69553143 None:intergenic 60.0%
CGGATATCGACGGTTCCGTC+GGG + chr5_2:69553125-69553144 None:intergenic 60.0%
GAGTTTGGAGGGGAGGGGAA+GGG - chr5_2:69555049-69555068 Msa0784830:intron 60.0%
GAGGGGAAGGGAAGGCTTTG+AGG - chr5_2:69555061-69555080 Msa0784830:intron 60.0%
!! GGGGAAGGGAAGGCTTTGAG+GGG - chr5_2:69555063-69555082 Msa0784830:intron 60.0%
!! GAAGGGAAGGCTTTGAGGGG+TGG - chr5_2:69555066-69555085 Msa0784830:intron 60.0%
!! ATGGGAGGGGAGGGTTTTGG+GGG + chr5_2:69555326-69555345 None:intergenic 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG + chr5_2:69555395-69555414 None:intergenic 60.0%
GAGAGTTTGGAGGGGAAGGG+AGG + chr5_2:69555397-69555416 None:intergenic 60.0%
CACAAGGACACAGCTCAGCC+TGG - chr5_2:69556983-69557002 Msa0784830:intron 60.0%
GCTCCGCTTGGTCAGGACGA+CGG + chr5_2:69553070-69553089 None:intergenic 65.0%
ATGACGCGCTCCGCTTGGTC+AGG + chr5_2:69553077-69553096 None:intergenic 65.0%
GACCAAGCGGAGCGCGTCAT+CGG - chr5_2:69553077-69553096 Msa0784830:three_prime_UTR 65.0%
TTCCGATGACGCGCTCCGCT+TGG + chr5_2:69553082-69553101 None:intergenic 65.0%
GACGGTTCCGTCGGGGAGAA+CGG + chr5_2:69553117-69553136 None:intergenic 65.0%
CGAGTTTGGAGGGGAGGGGA+AGG - chr5_2:69555048-69555067 Msa0784830:intron 65.0%
TTGGAGGGGAGGGGAAGGGA+AGG - chr5_2:69555053-69555072 Msa0784830:intron 65.0%
!!! TGGGAGGGGAGGGTTTTGGG+GGG + chr5_2:69555325-69555344 None:intergenic 65.0%
GGGAAGGGAGGGGAAGGCTT+GGG + chr5_2:69555385-69555404 None:intergenic 65.0%
TTGGAGGGGAAGGGAGGGGA+AGG + chr5_2:69555391-69555410 None:intergenic 65.0%
CTTGGATCACCTGCCGCTGC+AGG - chr5_2:69555724-69555743 Msa0784830:intron 65.0%
CTCGGCTCCGTTCTCCCCGA+CGG - chr5_2:69553107-69553126 Msa0784830:three_prime_UTR 70.0%
GGGGAAGGGAGGGGAAGGCT+TGG + chr5_2:69555386-69555405 None:intergenic 70.0%
CGTCGGGGAGAACGGAGCCG+AGG + chr5_2:69553109-69553128 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 69552839 69557417 69552839 ID=Msa0784830;Name=Msa0784830
chr5_2 mRNA 69552839 69557417 69552839 ID=Msa0784830-mRNA-1;Parent=Msa0784830;Name=Msa0784830-mRNA-1;_AED=0.04;_eAED=0.04;_QI=127|1|1|1|1|1|5|377|284
chr5_2 exon 69552839 69553305 69552839 ID=Msa0784830-mRNA-1:exon:20944;Parent=Msa0784830-mRNA-1
chr5_2 exon 69553504 69553739 69553504 ID=Msa0784830-mRNA-1:exon:20943;Parent=Msa0784830-mRNA-1
chr5_2 exon 69555755 69555984 69555755 ID=Msa0784830-mRNA-1:exon:20942;Parent=Msa0784830-mRNA-1
chr5_2 exon 69556081 69556160 69556081 ID=Msa0784830-mRNA-1:exon:20941;Parent=Msa0784830-mRNA-1
chr5_2 exon 69557072 69557417 69557072 ID=Msa0784830-mRNA-1:exon:20940;Parent=Msa0784830-mRNA-1
chr5_2 five_prime_UTR 69557291 69557417 69557291 ID=Msa0784830-mRNA-1:five_prime_utr;Parent=Msa0784830-mRNA-1
chr5_2 CDS 69557072 69557290 69557072 ID=Msa0784830-mRNA-1:cds;Parent=Msa0784830-mRNA-1
chr5_2 CDS 69556081 69556160 69556081 ID=Msa0784830-mRNA-1:cds;Parent=Msa0784830-mRNA-1
chr5_2 CDS 69555755 69555984 69555755 ID=Msa0784830-mRNA-1:cds;Parent=Msa0784830-mRNA-1
chr5_2 CDS 69553504 69553739 69553504 ID=Msa0784830-mRNA-1:cds;Parent=Msa0784830-mRNA-1
chr5_2 CDS 69553216 69553305 69553216 ID=Msa0784830-mRNA-1:cds;Parent=Msa0784830-mRNA-1
chr5_2 three_prime_UTR 69552839 69553215 69552839 ID=Msa0784830-mRNA-1:three_prime_utr;Parent=Msa0784830-mRNA-1
Gene Sequence

>Msa0784830

ATGGCGGCGAGTAAGCGCACTGTGTTGCAATTCTCTTCTTCCCAAACCTTATCCGGGAAGGTTCATCCTCTCGTTATCTTCAACATCTGTGATTGCTATGTCCGTCGTCCTGACCAAGCGGAGCGCGTCATCGGAACACTCCTCGGCTCCGTTCTCCCCGACGGAACCGTCGATATCCGTAATTCATACGCTGTTCCGCACAATGAGTCCGTTGATCAGGTTGCTTTGGATATTGAGTACCACCATAATATGTTACTATCCCACCAAAAAGTGAATCCCAAGGAAGCTATAGTTGGATGGTATTCAACTGGTCTTGGAGTAACCGGTGGCAGTGCATTAATCCATGAATTTTATTCTCGAGAAGTATCCAACCCAATACATTTGACTGTTGACACAGGATTTGCAGATGGAGAGGGCACCATAAAAGCATATGTTTCAAACAATTTATCACTTGGAGATCAGCAAATTGCTGCACAGTTTCAAGAAATTCCTTTGGATCTTCGTATGGTTGAAGCTGAGCGCATTGGATTTGATAATCTGAAGTCAACGTCTGTTGACAAAATCCCATCTGATATAGAAGGGATGGAAGCCTCAATGACACATCTATTGGCCTTGGTTGATGACACCTACAAATATGTTGATGATGTTGTGGAAGGGCGTGTTGACCCAGACAACAAAATTGGGAAATGTATATCAGATGTTGTAGGTTCCCTTCCCAAAATGACCTCATTGGCATTTGATGAGCTTGTGAATGACAGCTTGCAGGATCACTTGCTCATGGTATATTTATCTAGCATCACAAGGACACAGCTCAGCCTGGCTGAAAAATTGAACACTGCTGCTCAGATTCTGTGA
Protein sequence

>Msa0784830

MAASKRTVLQFSSSQTLSGKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHNESVDQVALDIEYHHNMLLSHQKVNPKEAIVGWYSTGLGVTGGSALIHEFYSREVSNPIHLTVDTGFADGEGTIKAYVSNNLSLGDQQIAAQFQEIPLDLRMVEAERIGFDNLKSTSVDKIPSDIEGMEASMTHLLALVDDTYKYVDDVVEGRVDPDNKIGKCISDVVGSLPKMTSLAFDELVNDSLQDHLLMVYLSSITRTQLSLAEKLNTAAQIL*