Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317390 | XP_013444706.1 | 92.698 | 315 | 8 | 1 | 1 | 315 | 1 | 300 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317390 | sp|Q6UNT2|RL5_CUCSA | 80.392 | 306 | 45 | 1 | 1 | 306 | 1 | 291 | 0.0 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317390 | B7FJX5 | 92.698 | 315 | 8 | 1 | 1 | 315 | 1 | 300 | 0.0 | 587 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa1317390 | 0.882490 | 9.971436e-71 | -8.615850e-47 |
| Msa0003330 | Msa1317390 | 0.868412 | 6.657026e-66 | -8.615850e-47 |
| Msa0016350 | Msa1317390 | 0.817982 | 2.485480e-52 | -8.615850e-47 |
| Msa0027590 | Msa1317390 | 0.872840 | 2.333743e-67 | -8.615850e-47 |
| Msa0040220 | Msa1317390 | 0.853928 | 1.727289e-61 | -8.615850e-47 |
| Msa0042510 | Msa1317390 | 0.866057 | 3.766017e-65 | -8.615850e-47 |
| Msa0065330 | Msa1317390 | 0.819671 | 1.027606e-52 | -8.615850e-47 |
| Msa0075350 | Msa1317390 | 0.817710 | 2.863457e-52 | -8.615850e-47 |
| Msa0079560 | Msa1317390 | 0.857300 | 1.793297e-62 | -8.615850e-47 |
| Msa0086160 | Msa1317390 | 0.815346 | 9.690653e-52 | -8.615850e-47 |
| Msa0087910 | Msa1317390 | 0.819830 | 9.453077e-53 | -8.615850e-47 |
| Msa0094210 | Msa1317390 | 0.819641 | 1.044066e-52 | -8.615850e-47 |
| Msa0110630 | Msa1317390 | 0.806824 | 6.816882e-50 | -8.615850e-47 |
| Msa0116600 | Msa1317390 | 0.878413 | 2.864996e-69 | -8.615850e-47 |
| Msa0116690 | Msa1317390 | 0.866760 | 2.252828e-65 | -8.615850e-47 |
| Msa0602900 | Msa1317390 | 0.895649 | 7.841834e-76 | -8.615850e-47 |
| Msa0605890 | Msa1317390 | 0.845209 | 4.684114e-59 | -8.615850e-47 |
| Msa0610000 | Msa1317390 | 0.818411 | 1.987872e-52 | -8.615850e-47 |
| Msa0619230 | Msa1317390 | 0.905679 | 3.325621e-80 | -8.615850e-47 |
| Msa0621190 | Msa1317390 | 0.886214 | 4.153925e-72 | -8.615850e-47 |
| Msa0629280 | Msa1317390 | 0.812807 | 3.520711e-51 | -8.615850e-47 |
| Msa0643960 | Msa1317390 | 0.894798 | 1.757461e-75 | -8.615850e-47 |
| Msa0648620 | Msa1317390 | 0.821793 | 3.342236e-53 | -8.615850e-47 |
| Msa0648670 | Msa1317390 | 0.843316 | 1.510295e-58 | -8.615850e-47 |
| Msa0653060 | Msa1317390 | 0.823066 | 1.691379e-53 | -8.615850e-47 |
| Msa0656450 | Msa1317390 | 0.892017 | 2.338771e-74 | -8.615850e-47 |
| Msa0686550 | Msa1317390 | 0.839928 | 1.181424e-57 | -8.615850e-47 |
| Msa0691760 | Msa1317390 | 0.851471 | 8.686259e-61 | -8.615850e-47 |
| Msa0694400 | Msa1317390 | 0.901707 | 2.040583e-78 | -8.615850e-47 |
| Msa0700370 | Msa1317390 | 0.868388 | 6.776415e-66 | -8.615850e-47 |
| Msa0704860 | Msa1317390 | 0.831517 | 1.595776e-55 | -8.615850e-47 |
| Msa0708630 | Msa1317390 | 0.898022 | 7.969756e-77 | -8.615850e-47 |
| Msa0758420 | Msa1317390 | 0.836972 | 6.839104e-57 | -8.615850e-47 |
| Msa0784830 | Msa1317390 | 0.819231 | 1.294364e-52 | -8.615850e-47 |
| Msa0788380 | Msa1317390 | 0.824980 | 6.016227e-54 | -8.615850e-47 |
| Msa0790450 | Msa1317390 | 0.901766 | 1.921654e-78 | -8.615850e-47 |
| Msa0798590 | Msa1317390 | 0.807094 | 5.978283e-50 | -8.615850e-47 |
| Msa0834220 | Msa1317390 | 0.873477 | 1.426074e-67 | -8.615850e-47 |
| Msa0123290 | Msa1317390 | 0.833773 | 4.398436e-56 | -8.615850e-47 |
| Msa0127230 | Msa1317390 | 0.849244 | 3.661390e-60 | -8.615850e-47 |
| Msa0128330 | Msa1317390 | 0.865964 | 4.030599e-65 | -8.615850e-47 |
| Msa0132460 | Msa1317390 | 0.896733 | 2.777299e-76 | -8.615850e-47 |
| Msa0134580 | Msa1317390 | 0.854578 | 1.121212e-61 | -8.615850e-47 |
| Msa0167860 | Msa1317390 | 0.879876 | 8.712900e-70 | -8.615850e-47 |
| Msa0168320 | Msa1317390 | 0.861327 | 1.108708e-63 | -8.615850e-47 |
| Msa0174580 | Msa1317390 | 0.847946 | 8.382274e-60 | -8.615850e-47 |
| Msa0182050 | Msa1317390 | 0.901227 | 3.315513e-78 | -8.615850e-47 |
| Msa0182100 | Msa1317390 | 0.897187 | 1.793280e-76 | -8.615850e-47 |
| Msa0188740 | Msa1317390 | 0.897908 | 8.900904e-77 | -8.615850e-47 |
| Msa0191450 | Msa1317390 | 0.861365 | 1.079686e-63 | -8.615850e-47 |
| Msa0191550 | Msa1317390 | 0.868844 | 4.826790e-66 | -8.615850e-47 |
| Msa0192300 | Msa1317390 | 0.922322 | 1.143564e-88 | -8.615850e-47 |
| Msa0194940 | Msa1317390 | 0.821012 | 5.061407e-53 | -8.615850e-47 |
| Msa0195030 | Msa1317390 | 0.836687 | 8.083990e-57 | -8.615850e-47 |
| Msa0216200 | Msa1317390 | 0.844704 | 6.411244e-59 | -8.615850e-47 |
| Msa0219090 | Msa1317390 | 0.805546 | 1.266958e-49 | -8.615850e-47 |
| Msa0233550 | Msa1317390 | 0.889281 | 2.787049e-73 | -8.615850e-47 |
| Msa0234850 | Msa1317390 | 0.817718 | 2.852239e-52 | -8.615850e-47 |
| Msa0234900 | Msa1317390 | 0.814894 | 1.221107e-51 | -8.615850e-47 |
| Msa0237180 | Msa1317390 | 0.830616 | 2.657043e-55 | -8.615850e-47 |
| Msa1235950 | Msa1317390 | 0.923314 | 3.125817e-89 | -8.615850e-47 |
| Msa1235980 | Msa1317390 | 0.928527 | 2.545402e-92 | -8.615850e-47 |
| Msa1237040 | Msa1317390 | 0.952762 | 1.200760e-110 | -8.615850e-47 |
| Msa1240270 | Msa1317390 | 0.807570 | 4.738685e-50 | -8.615850e-47 |
| Msa1258540 | Msa1317390 | 0.893014 | 9.318573e-75 | -8.615850e-47 |
| Msa1270640 | Msa1317390 | 0.802487 | 5.481351e-49 | -8.615850e-47 |
| Msa1270710 | Msa1317390 | 0.804843 | 1.777840e-49 | -8.615850e-47 |
| Msa1278130 | Msa1317390 | 0.870755 | 1.148528e-66 | -8.615850e-47 |
| Msa1284060 | Msa1317390 | 0.837295 | 5.656696e-57 | -8.615850e-47 |
| Msa1284800 | Msa1317390 | 0.845753 | 3.336012e-59 | -8.615850e-47 |
| Msa1296090 | Msa1317390 | 0.809754 | 1.618070e-50 | -8.615850e-47 |
| Msa1316100 | Msa1317390 | 0.899478 | 1.905391e-77 | -8.615850e-47 |
| Msa1317390 | Msa1329930 | 0.807607 | 4.654829e-50 | -8.615850e-47 |
| Msa1317390 | Msa1333350 | 0.801636 | 8.202398e-49 | -8.615850e-47 |
| Msa1317390 | Msa1341780 | 0.848874 | 4.640524e-60 | -8.615850e-47 |
| Msa1317390 | Msa1351020 | 0.892251 | 1.885761e-74 | -8.615850e-47 |
| Msa1317390 | Msa1358710 | 0.845787 | 3.265850e-59 | -8.615850e-47 |
| Msa1317390 | Msa1363910 | 0.824415 | 8.171274e-54 | -8.615850e-47 |
| Msa1317390 | Msa1363930 | 0.845376 | 4.219957e-59 | -8.615850e-47 |
| Msa1317390 | Msa1371410 | 0.815112 | 1.092460e-51 | -8.615850e-47 |
| Msa1317390 | Msa1385480 | 0.886393 | 3.556033e-72 | -8.615850e-47 |
| Msa1317390 | Msa1387750 | 0.891174 | 5.052624e-74 | -8.615850e-47 |
| Msa1317390 | Msa1390760 | 0.905456 | 4.210104e-80 | -8.615850e-47 |
| Msa1317390 | Msa1403520 | 0.849734 | 2.673267e-60 | -8.615850e-47 |
| Msa1317390 | Msa1407550 | 0.913799 | 4.045487e-84 | -8.615850e-47 |
| Msa1317390 | Msa1413570 | 0.894117 | 3.331891e-75 | -8.615850e-47 |
| Msa1317390 | Msa1415620 | 0.814745 | 1.317329e-51 | -8.615850e-47 |
| Msa1317390 | Msa1421510 | 0.836336 | 9.934457e-57 | -8.615850e-47 |
| Msa1317390 | Msa1423050 | 0.856994 | 2.207932e-62 | -8.615850e-47 |
| Msa1317390 | Msa1424570 | 0.833714 | 4.550850e-56 | -8.615850e-47 |
| Msa1317390 | Msa1425070 | 0.807132 | 5.869179e-50 | -8.615850e-47 |
| Msa1317390 | Msa1432310 | 0.873389 | 1.526875e-67 | -8.615850e-47 |
| Msa1317390 | Msa1449160 | 0.802391 | 5.736022e-49 | -8.615850e-47 |
| Msa1317390 | Msa1450560 | 0.906761 | 1.049949e-80 | -8.615850e-47 |
| Msa1317390 | Msa1453380 | 0.802282 | 6.041925e-49 | -8.615850e-47 |
| Msa1317390 | Msa1453530 | 0.879308 | 1.386045e-69 | -8.615850e-47 |
| Msa1317390 | Msa1463510 | 0.831242 | 1.865683e-55 | -8.615850e-47 |
| Msa1317390 | Msa1463570 | 0.863135 | 3.089941e-64 | -8.615850e-47 |
| Msa1317390 | Msa1465700 | 0.931623 | 2.872626e-94 | -8.615850e-47 |
| Msa1317390 | Msa1465890 | 0.856266 | 3.614188e-62 | -8.615850e-47 |
| Msa0369410 | Msa1317390 | 0.805696 | 1.178439e-49 | -8.615850e-47 |
| Msa0371490 | Msa1317390 | 0.897087 | 1.974298e-76 | -8.615850e-47 |
| Msa0376850 | Msa1317390 | 0.823260 | 1.523967e-53 | -8.615850e-47 |
| Msa0377370 | Msa1317390 | 0.825507 | 4.513705e-54 | -8.615850e-47 |
| Msa0377520 | Msa1317390 | 0.845034 | 5.223167e-59 | -8.615850e-47 |
| Msa0382670 | Msa1317390 | 0.885474 | 7.883822e-72 | -8.615850e-47 |
| Msa0387290 | Msa1317390 | 0.854621 | 1.089656e-61 | -8.615850e-47 |
| Msa0388520 | Msa1317390 | 0.820987 | 5.129448e-53 | -8.615850e-47 |
| Msa0416470 | Msa1317390 | 0.835631 | 1.499777e-56 | -8.615850e-47 |
| Msa0426090 | Msa1317390 | 0.899663 | 1.585900e-77 | -8.615850e-47 |
| Msa0426250 | Msa1317390 | 0.876732 | 1.105063e-68 | -8.615850e-47 |
| Msa0426940 | Msa1317390 | 0.823216 | 1.560515e-53 | -8.615850e-47 |
| Msa0432750 | Msa1317390 | 0.810733 | 9.954993e-51 | -8.615850e-47 |
| Msa0433210 | Msa1317390 | 0.804945 | 1.692625e-49 | -8.615850e-47 |
| Msa0472480 | Msa1317390 | 0.902668 | 7.661636e-79 | -8.615850e-47 |
| Msa0473390 | Msa1317390 | 0.805600 | 1.234239e-49 | -8.615850e-47 |
| Msa0475810 | Msa1317390 | 0.839453 | 1.570155e-57 | -8.615850e-47 |
| Msa0479980 | Msa1317390 | 0.806293 | 8.825579e-50 | -8.615850e-47 |
| Msa0481520 | Msa1317390 | 0.836766 | 7.721747e-57 | -8.615850e-47 |
| Msa0482560 | Msa1317390 | 0.863029 | 3.331566e-64 | -8.615850e-47 |
| Msa1019110 | Msa1317390 | 0.832720 | 8.046024e-56 | -8.615850e-47 |
| Msa1025200 | Msa1317390 | 0.821972 | 3.038097e-53 | -8.615850e-47 |
| Msa1025220 | Msa1317390 | 0.832995 | 6.873547e-56 | -8.615850e-47 |
| Msa1040160 | Msa1317390 | 0.830073 | 3.606270e-55 | -8.615850e-47 |
| Msa1041680 | Msa1317390 | 0.840019 | 1.118836e-57 | -8.615850e-47 |
| Msa1041830 | Msa1317390 | 0.827084 | 1.901658e-54 | -8.615850e-47 |
| Msa1047020 | Msa1317390 | 0.810152 | 1.328611e-50 | -8.615850e-47 |
| Msa1054280 | Msa1317390 | 0.827065 | 1.921554e-54 | -8.615850e-47 |
| Msa1068660 | Msa1317390 | 0.807437 | 5.058086e-50 | -8.615850e-47 |
| Msa1082050 | Msa1317390 | 0.881639 | 2.031159e-70 | -8.615850e-47 |
| Msa1083370 | Msa1317390 | 0.847812 | 9.123354e-60 | -8.615850e-47 |
| Msa1085850 | Msa1317390 | 0.820264 | 7.518399e-53 | -8.615850e-47 |
| Msa0239420 | Msa1317390 | 0.891832 | 2.771606e-74 | -8.615850e-47 |
| Msa0270160 | Msa1317390 | 0.880990 | 3.479758e-70 | -8.615850e-47 |
| Msa0274940 | Msa1317390 | 0.841971 | 3.437651e-58 | -8.615850e-47 |
| Msa0277600 | Msa1317390 | 0.857311 | 1.779519e-62 | -8.615850e-47 |
| Msa0281370 | Msa1317390 | 0.845316 | 4.381977e-59 | -8.615850e-47 |
| Msa0301250 | Msa1317390 | 0.927079 | 1.936492e-91 | -8.615850e-47 |
| Msa0313060 | Msa1317390 | 0.911893 | 3.626710e-83 | -8.615850e-47 |
| Msa0315430 | Msa1317390 | 0.855102 | 7.901614e-62 | -8.615850e-47 |
| Msa0315660 | Msa1317390 | 0.831735 | 1.410178e-55 | -8.615850e-47 |
| Msa0327880 | Msa1317390 | 0.808730 | 2.682778e-50 | -8.615850e-47 |
| Msa0340560 | Msa1317390 | 0.863469 | 2.434086e-64 | -8.615850e-47 |
| Msa1116940 | Msa1317390 | 0.900225 | 9.059181e-78 | -8.615850e-47 |
| Msa1124980 | Msa1317390 | 0.864096 | 1.554826e-64 | -8.615850e-47 |
| Msa1126690 | Msa1317390 | 0.872683 | 2.634626e-67 | -8.615850e-47 |
| Msa1136880 | Msa1317390 | 0.866631 | 2.475629e-65 | -8.615850e-47 |
| Msa1136980 | Msa1317390 | 0.828847 | 7.158507e-55 | -8.615850e-47 |
| Msa1144630 | Msa1317390 | 0.845025 | 5.251879e-59 | -8.615850e-47 |
| Msa1156830 | Msa1317390 | 0.834619 | 2.698560e-56 | -8.615850e-47 |
| Msa1166570 | Msa1317390 | 0.840633 | 7.729576e-58 | -8.615850e-47 |
| Msa1167360 | Msa1317390 | 0.862195 | 6.017111e-64 | -8.615850e-47 |
| Msa1180000 | Msa1317390 | 0.835184 | 1.945450e-56 | -8.615850e-47 |
| Msa1186030 | Msa1317390 | 0.821859 | 3.227607e-53 | -8.615850e-47 |
| Msa1206240 | Msa1317390 | 0.815199 | 1.044971e-51 | -8.615850e-47 |
| Msa1213850 | Msa1317390 | 0.864251 | 1.391187e-64 | -8.615850e-47 |
| Msa1218610 | Msa1317390 | 0.815712 | 8.030957e-52 | -8.615850e-47 |
| Msa0485220 | Msa1317390 | 0.875010 | 4.313959e-68 | -8.615850e-47 |
| Msa0511760 | Msa1317390 | 0.868615 | 5.725391e-66 | -8.615850e-47 |
| Msa0516830 | Msa1317390 | 0.823788 | 1.146932e-53 | -8.615850e-47 |
| Msa0517480 | Msa1317390 | 0.835166 | 1.965483e-56 | -8.615850e-47 |
| Msa0547920 | Msa1317390 | 0.894538 | 2.244333e-75 | -8.615850e-47 |
| Msa0552510 | Msa1317390 | 0.806367 | 8.513014e-50 | -8.615850e-47 |
| Msa0563540 | Msa1317390 | 0.806543 | 7.818269e-50 | -8.615850e-47 |
| Msa0573550 | Msa1317390 | 0.885645 | 6.800552e-72 | -8.615850e-47 |
| Msa0574780 | Msa1317390 | 0.890855 | 6.750114e-74 | -8.615850e-47 |
| Msa0578010 | Msa1317390 | 0.900479 | 7.031457e-78 | -8.615850e-47 |
| Msa0582070 | Msa1317390 | 0.809064 | 2.276047e-50 | -8.615850e-47 |
| Msa0589160 | Msa1317390 | 0.821245 | 4.473927e-53 | -8.615850e-47 |
| Msa0597240 | Msa1317390 | 0.866639 | 2.461969e-65 | -8.615850e-47 |
| Msa0880050 | Msa1317390 | 0.858625 | 7.246596e-63 | -8.615850e-47 |
| Msa0929680 | Msa1317390 | 0.872242 | 3.697685e-67 | -8.615850e-47 |
| Msa0929700 | Msa1317390 | 0.889201 | 2.995188e-73 | -8.615850e-47 |
| Msa0930100 | Msa1317390 | 0.863001 | 3.397877e-64 | -8.615850e-47 |
| Msa0930360 | Msa1317390 | 0.926659 | 3.457819e-91 | -8.615850e-47 |
| Msa0930790 | Msa1317390 | 0.898890 | 3.405499e-77 | -8.615850e-47 |
| Msa0930890 | Msa1317390 | 0.832961 | 7.011632e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317390 | MtrunA17_Chr8g0347691 | 92.698 | 315 | 8 | 1 | 1 | 315 | 1 | 300 | 0.0 | 587 |
| Msa1317390 | MtrunA17_Chr3g0145691 | 85.574 | 305 | 29 | 1 | 1 | 305 | 1 | 290 | 0.0 | 530 |
| Msa1317390 | MtrunA17_Chr4g0006821 | 52.258 | 155 | 33 | 1 | 142 | 296 | 11 | 124 | 9.33e-44 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317390 | AT3G25520.3 | 80.000 | 305 | 46 | 1 | 1 | 305 | 1 | 290 | 0.0 | 503 |
| Msa1317390 | AT3G25520.1 | 80.000 | 305 | 46 | 1 | 1 | 305 | 1 | 290 | 0.0 | 503 |
| Msa1317390 | AT5G39740.2 | 79.344 | 305 | 48 | 1 | 1 | 305 | 1 | 290 | 0.0 | 502 |
| Msa1317390 | AT5G39740.1 | 79.344 | 305 | 48 | 1 | 1 | 305 | 1 | 290 | 0.0 | 502 |
| Msa1317390 | AT3G25520.2 | 81.461 | 178 | 33 | 0 | 128 | 305 | 2 | 179 | 1.29e-105 | 306 |
Find 109 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCACTGGTTCAACTTTC+TGG | -0.059970 | 8_4:-18612671 | Msa1317390:three_prime_UTR |
| GTTTATTGAGGTTAAAATTT+TGG | 0.119515 | 8_4:-18612710 | Msa1317390:three_prime_UTR |
| AAATTCCTGATTTCATTAAA+TGG | 0.175842 | 8_4:+18612423 | None:intergenic |
| AAATACCTCTTGTGTTGTTT+TGG | 0.227809 | 8_4:+18613034 | None:intergenic |
| GTTCACCGCAAGTATATCTT+TGG | 0.291930 | 8_4:-18613335 | Msa1317390:CDS |
| CTCTCCCATTTAATGAAATC+AGG | 0.301012 | 8_4:-18612428 | None:intergenic |
| TGTTCTTATCCTGGTTAATC+AGG | 0.320790 | 8_4:+18614950 | None:intergenic |
| GGGAAGAGTGTGAGGGAGCT+AGG | 0.323555 | 8_4:+18615457 | None:intergenic |
| TTCTCTGATTTCTTAATTGT+AGG | 0.339582 | 8_4:+18613064 | None:intergenic |
| TTTCACTGGTTCAACTTTCT+GGG | 0.341276 | 8_4:-18612670 | Msa1317390:three_prime_UTR |
| CACAGTGACAAAAGGTTTGC+TGG | 0.351205 | 8_4:-18613392 | Msa1317390:CDS |
| TTGTGCCACTATGTCCTTGT+TGG | 0.354967 | 8_4:+18614003 | None:intergenic |
| TGTTGTACTTGTTCTTATCC+TGG | 0.370099 | 8_4:+18614941 | None:intergenic |
| CCGTGTCTTTGGTGCCTTGA+AGG | 0.376067 | 8_4:-18613532 | Msa1317390:intron |
| ACTACTGGAAACCGTGTCTT+TGG | 0.377680 | 8_4:-18613543 | Msa1317390:CDS |
| AATTCCTGATTTCATTAAAT+GGG | 0.379074 | 8_4:+18612424 | None:intergenic |
| TTCACCGCAAGTATATCTTT+GGG | 0.381172 | 8_4:-18613334 | Msa1317390:CDS |
| GAGAGCACGGAATGGCCTCC+TGG | 0.398347 | 8_4:+18613590 | None:intergenic |
| TTTGAATTAGGTTTATGTTA+AGG | 0.401148 | 8_4:-18615161 | Msa1317390:intron |
| CTTAGCTTTCCGCTCCTCAT+AGG | 0.404551 | 8_4:+18612897 | None:intergenic |
| ATAGTGTCCGCTAGTATTGC+TGG | 0.407211 | 8_4:-18613980 | Msa1317390:CDS |
| GAATATCCAAACCACCATCT+AGG | 0.409965 | 8_4:+18613417 | None:intergenic |
| TCGGACAACAAATCGGTACT+TGG | 0.416359 | 8_4:+18614915 | None:intergenic |
| TGTAACAATATGAAGAGTTC+CGG | 0.419865 | 8_4:-18612478 | Msa1317390:three_prime_UTR |
| TGTGTTTGATAATGCCTTGT+TGG | 0.429602 | 8_4:-18612568 | Msa1317390:three_prime_UTR |
| TTCTTCTCTTGAACTTGACT+TGG | 0.430059 | 8_4:+18615107 | None:intergenic |
| GCATCACTCTGATGCATAAC+CGG | 0.432700 | 8_4:+18612459 | None:intergenic |
| TGTATTCACTAAAGTGAGTC+TGG | 0.437754 | 8_4:+18613158 | None:intergenic |
| TGAGATGGATGAGGAGTATG+AGG | 0.439950 | 8_4:-18613742 | Msa1317390:CDS |
| TTATTGCACTGGACTCCTCT+TGG | 0.442461 | 8_4:-18613787 | Msa1317390:CDS |
| GCTGGATCCGCAAGAGTTGA+TGG | 0.445523 | 8_4:+18615436 | None:intergenic |
| GGTTTACAGGGAGCCCTAGA+TGG | 0.454096 | 8_4:-18613431 | Msa1317390:intron |
| GTAACGCTTGAAGTAAGCCT+TGG | 0.458552 | 8_4:+18615129 | None:intergenic |
| ACCATTGTTGCAGACGCAGC+TGG | 0.464802 | 8_4:+18615418 | None:intergenic |
| GGTCTTGTTAAGACCACTAC+TGG | 0.466788 | 8_4:-18613558 | Msa1317390:CDS |
| GGGAGCCCTAGATGGTGGTT+TGG | 0.466900 | 8_4:-18613423 | Msa1317390:CDS |
| TCCAGCTGCGTCTGCAACAA+TGG | 0.469572 | 8_4:-18615419 | Msa1317390:intron |
| AATGGCCTCCTGGACTCAGC+TGG | 0.470728 | 8_4:+18613600 | None:intergenic |
| TTCCGTGCTCTCCTTGATGT+TGG | 0.475927 | 8_4:-18613579 | Msa1317390:CDS |
| GTTGCCTGTACTGTTTATTG+AGG | 0.481118 | 8_4:-18612722 | Msa1317390:three_prime_UTR |
| CATAACTATAAGCTGACAAA+AGG | 0.482215 | 8_4:+18614885 | None:intergenic |
| GAGTTGATGGGAAGAGTGTG+AGG | 0.484536 | 8_4:+18615449 | None:intergenic |
| AAGTGAGTCTGGAATTTCTC+AGG | 0.489225 | 8_4:+18613169 | None:intergenic |
| CCACACTTTGGTCTTTCAGT+AGG | 0.491595 | 8_4:-18613920 | Msa1317390:CDS |
| ATTACAAGTTGGGCTTTCAC+TGG | 0.495721 | 8_4:-18612684 | Msa1317390:three_prime_UTR |
| AATTAAGAAATCAGAGAAGC+AGG | 0.500284 | 8_4:-18613059 | Msa1317390:CDS |
| TACCTGCAGCATAATTTGTA+AGG | 0.500398 | 8_4:+18613897 | None:intergenic |
| GGAAGAGTGTGAGGGAGCTA+GGG | 0.500680 | 8_4:+18615458 | None:intergenic |
| GTCAAGTTCAAGAGAAGAAG+AGG | 0.501877 | 8_4:-18615103 | Msa1317390:intron |
| GGCCTTACAAATTATGCTGC+AGG | 0.502530 | 8_4:-18613899 | Msa1317390:intron |
| AGTTCTAGATATCCATCACT+TGG | 0.507334 | 8_4:+18612789 | None:intergenic |
| TGAGGAGCGGAAAGCTAAGT+TGG | 0.510748 | 8_4:-18612893 | Msa1317390:CDS |
| CAGTTGAGCCAGCTGAGTCC+AGG | 0.512028 | 8_4:-18613608 | Msa1317390:CDS |
| CGGACAACAAATCGGTACTT+GGG | 0.512041 | 8_4:+18614916 | None:intergenic |
| TCTGAAGAAGCTTACCTATG+AGG | 0.512591 | 8_4:-18612911 | Msa1317390:CDS |
| TTTAGTGAATACATCAAGAA+AGG | 0.515819 | 8_4:-18613148 | Msa1317390:CDS |
| GCTGACAAAAGGATACAAAT+CGG | 0.518595 | 8_4:+18614896 | None:intergenic |
| ATACAAATCGGACAACAAAT+CGG | 0.520677 | 8_4:+18614908 | None:intergenic |
| ATATTCCTCACAGTGACAAA+AGG | 0.523020 | 8_4:-18613400 | Msa1317390:CDS |
| TCTCATGAGCTACCACACTT+TGG | 0.524328 | 8_4:-18613932 | Msa1317390:CDS |
| GAAGAAAGAGCTCGATGCTG+AGG | 0.526853 | 8_4:-18613357 | Msa1317390:CDS |
| ACAGTGACAAAAGGTTTGCT+GGG | 0.528756 | 8_4:-18613391 | Msa1317390:CDS |
| AATATCCAAACCACCATCTA+GGG | 0.535350 | 8_4:+18613418 | None:intergenic |
| TTAACCTCAATAAACAGTAC+AGG | 0.537908 | 8_4:+18612718 | None:intergenic |
| CTCAGGCTCATCTTCAGTCA+AGG | 0.537919 | 8_4:+18613186 | None:intergenic |
| TGTAGGATCAGCACGAATTG+CGG | 0.548679 | 8_4:+18613081 | None:intergenic |
| TCACCGCAAGTATATCTTTG+GGG | 0.552159 | 8_4:-18613333 | Msa1317390:CDS |
| ATGTGACCAGCTTATTGCAC+TGG | 0.552187 | 8_4:-18613798 | Msa1317390:intron |
| AAAGACACGGTTTCCAGTAG+TGG | 0.561300 | 8_4:+18613545 | None:intergenic |
| TCGTATTCGCCTGATTAACC+AGG | 0.567348 | 8_4:-18614959 | Msa1317390:CDS |
| TGTTAAGGCTCAGAAATCCA+AGG | 0.572355 | 8_4:-18615146 | Msa1317390:CDS |
| TTACAGGGAGCCCTAGATGG+TGG | 0.573973 | 8_4:-18613428 | Msa1317390:intron |
| ATACATCAAGAAAGGAATTG+AGG | 0.575667 | 8_4:-18613140 | Msa1317390:CDS |
| TGAGGGAGCTAGGGTTTGAG+AGG | 0.575828 | 8_4:+18615467 | None:intergenic |
| CTGGATCCGCAAGAGTTGAT+GGG | 0.580297 | 8_4:+18615437 | None:intergenic |
| AAGTGTCTTCAGAACACGAC+GGG | 0.584750 | 8_4:+18613764 | None:intergenic |
| GAGATGGATGAGGAGTATGA+GGG | 0.586795 | 8_4:-18613741 | Msa1317390:CDS |
| AAGGTTTGCTGGGTTTGACA+AGG | 0.586996 | 8_4:-18613381 | Msa1317390:CDS |
| TGTGTTTGCAGCCCAAGTGA+TGG | 0.590338 | 8_4:-18612801 | Msa1317390:three_prime_UTR |
| AAGAAAGGAATTGAGGCAGA+TGG | 0.591978 | 8_4:-18613133 | Msa1317390:CDS |
| CCTTGAGGAGCTGTACAAGA+AGG | 0.592833 | 8_4:-18613110 | Msa1317390:CDS |
| CACCGCAAGTATATCTTTGG+GGG | 0.596512 | 8_4:-18613332 | Msa1317390:CDS |
| GAAGACACTTGAGATGGATG+AGG | 0.597148 | 8_4:-18613751 | Msa1317390:CDS |
| GACCAACATCAAGGAGAGCA+CGG | 0.604422 | 8_4:+18613577 | None:intergenic |
| TAATGCTGCTGTTGATGATG+AGG | 0.605286 | 8_4:-18612851 | Msa1317390:CDS |
| CCTTCAAGGCACCAAAGACA+CGG | 0.609408 | 8_4:+18613532 | None:intergenic |
| GGACAACAAATCGGTACTTG+GGG | 0.611837 | 8_4:+18614917 | None:intergenic |
| TTGAGCCAGCTGAGTCCAGG+AGG | 0.614063 | 8_4:-18613605 | Msa1317390:CDS |
| TCTTAACAAGACCAACATCA+AGG | 0.618405 | 8_4:+18613568 | None:intergenic |
| ACATGTTGCTGCATACATGA+AGG | 0.618860 | 8_4:-18613309 | Msa1317390:intron |
| TTAGACCAACAAGGACATAG+TGG | 0.621773 | 8_4:-18614008 | Msa1317390:intron |
| TGCTGTTGATGATGAGGACG+AGG | 0.625300 | 8_4:-18612845 | Msa1317390:CDS |
| ACTCTTCCCATCAACTCTTG+CGG | 0.627101 | 8_4:-18615443 | Msa1317390:five_prime_UTR |
| GTTCTAGATATCCATCACTT+GGG | 0.629114 | 8_4:+18612790 | None:intergenic |
| GGAGTATGAGGGAAATGTTG+AGG | 0.639543 | 8_4:-18613730 | Msa1317390:intron |
| TGTTCTGAAGACACTTGAGA+TGG | 0.640254 | 8_4:-18613757 | Msa1317390:CDS |
| CCTTCTTGTACAGCTCCTCA+AGG | 0.646258 | 8_4:+18613110 | None:intergenic |
| AGGCTCCAAAACAACACAAG+AGG | 0.648143 | 8_4:-18613039 | Msa1317390:intron |
| TCAGAACACGACGGGCCAAG+AGG | 0.649699 | 8_4:+18613772 | None:intergenic |
| AGTTGATGGGAAGAGTGTGA+GGG | 0.651636 | 8_4:+18615450 | None:intergenic |
| ACATCAAGGAGAGCACGGAA+TGG | 0.653230 | 8_4:+18613582 | None:intergenic |
| AATTGAGGCAGATGGCCTTG+AGG | 0.657052 | 8_4:-18613125 | Msa1317390:CDS |
| TAATCAGGCGAATACGAGCA+CGG | 0.680796 | 8_4:+18614965 | None:intergenic |
| AACTCCTTATTAGACCAACA+AGG | 0.684350 | 8_4:-18614017 | Msa1317390:intron |
| AGAAGCTTACCTATGAGGAG+CGG | 0.703780 | 8_4:-18612906 | Msa1317390:CDS |
| AATATCACCAGCAATACTAG+CGG | 0.722529 | 8_4:+18613973 | None:intergenic |
| CCTACTGAAAGACCAAAGTG+TGG | 0.729262 | 8_4:+18613920 | None:intergenic |
| GACAACAAATCGGTACTTGG+GGG | 0.739465 | 8_4:+18614918 | None:intergenic |
| CAAGTGTCTTCAGAACACGA+CGG | 0.780703 | 8_4:+18613763 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAATGTTGATTTTTTA+TGG | - | chr8_4:18613134-18613153 | Msa1317390:CDS | 10.0% |
| !!! | AATTAATTATTGATTTCTTA+TGG | - | chr8_4:18613522-18613541 | Msa1317390:intron | 10.0% |
| !! | ATTTATATCAAAAAGTTATA+AGG | + | chr8_4:18613771-18613790 | None:intergenic | 10.0% |
| !!! | TTGGAATAATTTTTTTTTTA+AGG | - | chr8_4:18615347-18615366 | Msa1317390:intron | 10.0% |
| !!! | TGGAATAATTTTTTTTTTAA+GGG | - | chr8_4:18615348-18615367 | Msa1317390:intron | 10.0% |
| !!! | TTTATAAAATTGTTTTGTTT+GGG | + | chr8_4:18615383-18615402 | None:intergenic | 10.0% |
| !!! | TTTTTTTTATGTGATTTAAC+TGG | - | chr8_4:18613093-18613112 | Msa1317390:CDS | 15.0% |
| !! | TTAAATTTAAATGAGAACAA+GGG | + | chr8_4:18614030-18614049 | None:intergenic | 15.0% |
| !! | TTTAAATTTAAATGAGAACA+AGG | + | chr8_4:18614031-18614050 | None:intergenic | 15.0% |
| !!! | TAAATTTGTTTTTATCTTTG+TGG | - | chr8_4:18614047-18614066 | Msa1317390:intron | 15.0% |
| !! | AAAAAAAAATTATTCCAACA+AGG | + | chr8_4:18615345-18615364 | None:intergenic | 15.0% |
| !!! | GTTTATAAAATTGTTTTGTT+TGG | + | chr8_4:18615384-18615403 | None:intergenic | 15.0% |
| !!! | TGTATTGTGTTTTTTGAATT+AGG | - | chr8_4:18612723-18612742 | Msa1317390:three_prime_UTR | 20.0% |
| !! | TTTGAATTAGGTTTATGTTA+AGG | - | chr8_4:18612735-18612754 | Msa1317390:three_prime_UTR | 20.0% |
| !!! | AATAAAATCAGCATACATTT+TGG | + | chr8_4:18612878-18612897 | None:intergenic | 20.0% |
| !!! | GTTTTTGATTAGCATTTTTA+TGG | - | chr8_4:18613241-18613260 | Msa1317390:intron | 20.0% |
| !! | TCAATTGTTAGAAATGTTAT+TGG | - | chr8_4:18613277-18613296 | Msa1317390:intron | 20.0% |
| !! | CAATTGTTAGAAATGTTATT+GGG | - | chr8_4:18613278-18613297 | Msa1317390:intron | 20.0% |
| !! | AATTGTTAGAAATGTTATTG+GGG | - | chr8_4:18613279-18613298 | Msa1317390:intron | 20.0% |
| !!! | TTATTTGTTGATTTTGTTAG+TGG | - | chr8_4:18613650-18613669 | Msa1317390:intron | 20.0% |
| !!! | TTAGTTTAATCCTTTTAAAC+AGG | - | chr8_4:18614247-18614266 | Msa1317390:intron | 20.0% |
| !! | GATTCTAGTATGAAATAAAA+GGG | + | chr8_4:18614891-18614910 | None:intergenic | 20.0% |
| !! | AGATTCTAGTATGAAATAAA+AGG | + | chr8_4:18614892-18614911 | None:intergenic | 20.0% |
| !! | GCATGTAATAAATAATACTA+AGG | + | chr8_4:18614919-18614938 | None:intergenic | 20.0% |
| !!! | TTTATTTGTTAATCTTGTGT+AGG | - | chr8_4:18614957-18614976 | Msa1317390:CDS | 20.0% |
| !!! | GTTTATTGAGGTTAAAATTT+TGG | - | chr8_4:18615186-18615205 | Msa1317390:intron | 20.0% |
| !!! | AATTTTGGATAATTACAAGT+TGG | - | chr8_4:18615201-18615220 | Msa1317390:intron | 20.0% |
| !!! | ATTTTGGATAATTACAAGTT+GGG | - | chr8_4:18615202-18615221 | Msa1317390:intron | 20.0% |
| !!! | CCTTTACTTTTTTTATTAGT+CGG | - | chr8_4:18615289-18615308 | Msa1317390:intron | 20.0% |
| ! | GATCTAAGAAATTAAAGCTA+TGG | + | chr8_4:18612542-18612561 | None:intergenic | 25.0% |
| ! | ATTACACAAAAAAACCGAAA+GGG | + | chr8_4:18613219-18613238 | None:intergenic | 25.0% |
| ! | AATTACACAAAAAAACCGAA+AGG | + | chr8_4:18613220-18613239 | None:intergenic | 25.0% |
| ! | ATTGTTAGAAATGTTATTGG+GGG | - | chr8_4:18613280-18613299 | Msa1317390:intron | 25.0% |
| !!! | CTTTGAGATAAAAACCAAAA+GGG | + | chr8_4:18613318-18613337 | None:intergenic | 25.0% |
| !!! | TCTTTGAGATAAAAACCAAA+AGG | + | chr8_4:18613319-18613338 | None:intergenic | 25.0% |
| ! | TAATTGTTAGAAATGCTAGT+CGG | - | chr8_4:18613411-18613430 | Msa1317390:CDS | 25.0% |
| ! | AATTGTTTGTAATGCTAGTT+TGG | - | chr8_4:18613688-18613707 | Msa1317390:intron | 25.0% |
| ! | CAAAAAGTTATAAGGTGATT+TGG | + | chr8_4:18613763-18613782 | None:intergenic | 25.0% |
| !! | CTATTGTTAGTTGTTATTGT+TGG | - | chr8_4:18613832-18613851 | Msa1317390:intron | 25.0% |
| !!! | TAATGATTTTAGTACCTTCA+AGG | + | chr8_4:18614381-18614400 | None:intergenic | 25.0% |
| !!! | GTTGATTTGAATATTTGTGA+TGG | - | chr8_4:18614444-18614463 | Msa1317390:intron | 25.0% |
| ! | AATATTTGTGATGGTTTACA+GGG | - | chr8_4:18614453-18614472 | Msa1317390:intron | 25.0% |
| !! | TCAATGTTATTCACAGATTT+TGG | + | chr8_4:18614676-18614695 | None:intergenic | 25.0% |
| ! | TTTAGTGAATACATCAAGAA+AGG | - | chr8_4:18614748-18614767 | Msa1317390:intron | 25.0% |
| ! | TTCTCTGATTTCTTAATTGT+AGG | + | chr8_4:18614835-18614854 | None:intergenic | 25.0% |
| ! | CCGACTAATAAAAAAAGTAA+AGG | + | chr8_4:18615292-18615311 | None:intergenic | 25.0% |
| GAAACGAAATGAAGAGAAAA+TGG | + | chr8_4:18612517-18612536 | None:intergenic | 30.0% | |
| AAGAAATGTCAGAATGAAAG+AGG | + | chr8_4:18612585-18612604 | None:intergenic | 30.0% | |
| ! | AACTTCTTTTGTGTCGTATA+TGG | - | chr8_4:18612666-18612685 | Msa1317390:three_prime_UTR | 30.0% |
| ! | ACTTCTTTTGTGTCGTATAT+GGG | - | chr8_4:18612667-18612686 | Msa1317390:three_prime_UTR | 30.0% |
| ATACAAATCGGACAACAAAT+CGG | + | chr8_4:18612991-18613010 | None:intergenic | 30.0% | |
| CATAACTATAAGCTGACAAA+AGG | + | chr8_4:18613014-18613033 | None:intergenic | 30.0% | |
| ! | TATGATTTTCATTGATGCAC+TGG | - | chr8_4:18613030-18613049 | Msa1317390:intron | 30.0% |
| GATAAAAACCAAAAGGGTTA+AGG | + | chr8_4:18613312-18613331 | None:intergenic | 30.0% | |
| ! | AATTGATCGTTGCATTTTTG+TGG | - | chr8_4:18613374-18613393 | Msa1317390:CDS | 30.0% |
| AATTGTTAGAAATGCTAGTC+GGG | - | chr8_4:18613412-18613431 | Msa1317390:CDS | 30.0% | |
| GAAGATGATGAAAACCAAAA+GGG | + | chr8_4:18613457-18613476 | None:intergenic | 30.0% | |
| TATAATCATCTCACATAACC+AGG | + | chr8_4:18613488-18613507 | None:intergenic | 30.0% | |
| AATTGTTAGAAATGCTAGTG+AGG | - | chr8_4:18613560-18613579 | Msa1317390:CDS | 30.0% | |
| ATTGTTAGAAATGCTAGTGA+GGG | - | chr8_4:18613561-18613580 | Msa1317390:CDS | 30.0% | |
| AGAAAAAACCAAAAGGATTG+TGG | + | chr8_4:18613596-18613615 | None:intergenic | 30.0% | |
| !!! | TCCTTTTGGTTTTTTCTTCA+AGG | - | chr8_4:18613599-18613618 | Msa1317390:CDS | 30.0% |
| TCCTTGAAGAAAAAACCAAA+AGG | + | chr8_4:18613603-18613622 | None:intergenic | 30.0% | |
| !!! | TTTTTTCTTCAAGGAAGACA+TGG | - | chr8_4:18613608-18613627 | Msa1317390:CDS | 30.0% |
| ! | TATAAGGTGATTTGGAAAGA+GGG | + | chr8_4:18613755-18613774 | None:intergenic | 30.0% |
| ! | TTATAAGGTGATTTGGAAAG+AGG | + | chr8_4:18613756-18613775 | None:intergenic | 30.0% |
| GAATATTTGTGATGGTTTAC+AGG | - | chr8_4:18614452-18614471 | Msa1317390:intron | 30.0% | |
| ATACATCAAGAAAGGAATTG+AGG | - | chr8_4:18614756-18614775 | Msa1317390:intron | 30.0% | |
| AATTAAGAAATCAGAGAAGC+AGG | - | chr8_4:18614837-18614856 | Msa1317390:intron | 30.0% | |
| !!! | AAATACCTCTTGTGTTGTTT+TGG | + | chr8_4:18614865-18614884 | None:intergenic | 30.0% |
| TTAACCTCAATAAACAGTAC+AGG | + | chr8_4:18615181-18615200 | None:intergenic | 30.0% | |
| TGTAACAATATGAAGAGTTC+CGG | - | chr8_4:18615418-18615437 | Msa1317390:intron | 30.0% | |
| ATGAAGAGAAAATGGAAGAG+TGG | + | chr8_4:18612509-18612528 | None:intergenic | 35.0% | |
| TTCTTCTCTTGAACTTGACT+TGG | + | chr8_4:18612792-18612811 | None:intergenic | 35.0% | |
| TGTTCTTATCCTGGTTAATC+AGG | + | chr8_4:18612949-18612968 | None:intergenic | 35.0% | |
| TGTTGTACTTGTTCTTATCC+TGG | + | chr8_4:18612958-18612977 | None:intergenic | 35.0% | |
| GCTGACAAAAGGATACAAAT+CGG | + | chr8_4:18613003-18613022 | None:intergenic | 35.0% | |
| GGAAGATGATGAAAACCAAA+AGG | + | chr8_4:18613458-18613477 | None:intergenic | 35.0% | |
| TTGTTAGAAATGCTAGTGAG+GGG | - | chr8_4:18613562-18613581 | Msa1317390:CDS | 35.0% | |
| ! | AGTTGAATCCACAATCCTTT+TGG | - | chr8_4:18613585-18613604 | Msa1317390:CDS | 35.0% |
| ! | ATATGAGTTGGAGGGATTAA+AGG | + | chr8_4:18613730-18613749 | None:intergenic | 35.0% |
| AACTCCTTATTAGACCAACA+AGG | - | chr8_4:18613879-18613898 | Msa1317390:intron | 35.0% | |
| ! | ATGTCCTTGTTGGTCTAATA+AGG | + | chr8_4:18613886-18613905 | None:intergenic | 35.0% |
| AATATCACCAGCAATACTAG+CGG | + | chr8_4:18613926-18613945 | None:intergenic | 35.0% | |
| ! | TACCTGCAGCATAATTTGTA+AGG | + | chr8_4:18614002-18614021 | None:intergenic | 35.0% |
| ! | AATCCTTTTAAACAGGCTAC+TGG | - | chr8_4:18614254-18614273 | Msa1317390:intron | 35.0% |
| TCTTAACAAGACCAACATCA+AGG | + | chr8_4:18614331-18614350 | None:intergenic | 35.0% | |
| AATATCCAAACCACCATCTA+GGG | + | chr8_4:18614481-18614500 | None:intergenic | 35.0% | |
| ATATTCCTCACAGTGACAAA+AGG | - | chr8_4:18614496-18614515 | Msa1317390:intron | 35.0% | |
| TTCACCGCAAGTATATCTTT+GGG | - | chr8_4:18614562-18614581 | Msa1317390:intron | 35.0% | |
| TGTATTCACTAAAGTGAGTC+TGG | + | chr8_4:18614741-18614760 | None:intergenic | 35.0% | |
| ! | GTTCTAGATATCCATCACTT+GGG | + | chr8_4:18615109-18615128 | None:intergenic | 35.0% |
| !! | AGTTCTAGATATCCATCACT+TGG | + | chr8_4:18615110-18615129 | None:intergenic | 35.0% |
| !! | TTTCACTGGTTCAACTTTCT+GGG | - | chr8_4:18615226-18615245 | Msa1317390:intron | 35.0% |
| !! | TGTGTTTGATAATGCCTTGT+TGG | - | chr8_4:18615328-18615347 | Msa1317390:intron | 35.0% |
| TGTTAAGGCTCAGAAATCCA+AGG | - | chr8_4:18612750-18612769 | Msa1317390:three_prime_UTR | 40.0% | |
| GTCAAGTTCAAGAGAAGAAG+AGG | - | chr8_4:18612793-18612812 | Msa1317390:three_prime_UTR | 40.0% | |
| ATTCGATGATGAATCTGCAG+AGG | - | chr8_4:18612895-18612914 | Msa1317390:CDS | 40.0% | |
| TTCGATGATGAATCTGCAGA+GGG | - | chr8_4:18612896-18612915 | Msa1317390:CDS | 40.0% | |
| AATGCTACTGTATGCTACTG+TGG | - | chr8_4:18613178-18613197 | Msa1317390:CDS | 40.0% | |
| ATGCTACTGTATGCTACTGT+GGG | - | chr8_4:18613179-18613198 | Msa1317390:CDS | 40.0% | |
| AGTTGAATCCACAACCCTTT+CGG | - | chr8_4:18613202-18613221 | Msa1317390:intron | 40.0% | |
| CAAAAAAACCGAAAGGGTTG+TGG | + | chr8_4:18613213-18613232 | None:intergenic | 40.0% | |
| ! | GGTTGAATCCTTAACCCTTT+TGG | - | chr8_4:18613301-18613320 | Msa1317390:intron | 40.0% |
| TTAGACCAACAAGGACATAG+TGG | - | chr8_4:18613888-18613907 | Msa1317390:intron | 40.0% | |
| !! | TGTTCTGAAGACACTTGAGA+TGG | - | chr8_4:18614139-18614158 | Msa1317390:intron | 40.0% |
| GCAAAGAACAGTGTCTAGAT+AGG | + | chr8_4:18614220-18614239 | None:intergenic | 40.0% | |
| TCTCCAGTAGCCTGTTTAAA+AGG | + | chr8_4:18614260-18614279 | None:intergenic | 40.0% | |
| ! | TTTTAAACAGGCTACTGGAG+AGG | - | chr8_4:18614259-18614278 | Msa1317390:intron | 40.0% |
| GAATATCCAAACCACCATCT+AGG | + | chr8_4:18614482-18614501 | None:intergenic | 40.0% | |
| ! | ACAGTGACAAAAGGTTTGCT+GGG | - | chr8_4:18614505-18614524 | Msa1317390:intron | 40.0% |
| GTTCACCGCAAGTATATCTT+TGG | - | chr8_4:18614561-18614580 | Msa1317390:intron | 40.0% | |
| TCACCGCAAGTATATCTTTG+GGG | - | chr8_4:18614563-18614582 | Msa1317390:intron | 40.0% | |
| ACATGTTGCTGCATACATGA+AGG | - | chr8_4:18614587-18614606 | Msa1317390:intron | 40.0% | |
| ! | AAGTGAGTCTGGAATTTCTC+AGG | + | chr8_4:18614730-18614749 | None:intergenic | 40.0% |
| AAGAAAGGAATTGAGGCAGA+TGG | - | chr8_4:18614763-18614782 | Msa1317390:intron | 40.0% | |
| TCTGAAGAAGCTTACCTATG+AGG | - | chr8_4:18614985-18615004 | Msa1317390:intron | 40.0% | |
| !! | TAATGCTGCTGTTGATGATG+AGG | - | chr8_4:18615045-18615064 | Msa1317390:intron | 40.0% |
| GTTGCCTGTACTGTTTATTG+AGG | - | chr8_4:18615174-18615193 | Msa1317390:intron | 40.0% | |
| ! | ATTACAAGTTGGGCTTTCAC+TGG | - | chr8_4:18615212-18615231 | Msa1317390:intron | 40.0% |
| !! | CTTTCACTGGTTCAACTTTC+TGG | - | chr8_4:18615225-18615244 | Msa1317390:intron | 40.0% |
| !! | AGTTGATGGGAAGAGTGTGA+GGG | + | chr8_4:18612449-18612468 | None:intergenic | 45.0% |
| ACTCTTCCCATCAACTCTTG+CGG | - | chr8_4:18612453-18612472 | Msa1317390:three_prime_UTR | 45.0% | |
| GTAACGCTTGAAGTAAGCCT+TGG | + | chr8_4:18612770-18612789 | None:intergenic | 45.0% | |
| TAATCAGGCGAATACGAGCA+CGG | + | chr8_4:18612934-18612953 | None:intergenic | 45.0% | |
| TCGTATTCGCCTGATTAACC+AGG | - | chr8_4:18612937-18612956 | Msa1317390:intron | 45.0% | |
| GACAACAAATCGGTACTTGG+GGG | + | chr8_4:18612981-18613000 | None:intergenic | 45.0% | |
| GGACAACAAATCGGTACTTG+GGG | + | chr8_4:18612982-18613001 | None:intergenic | 45.0% | |
| CGGACAACAAATCGGTACTT+GGG | + | chr8_4:18612983-18613002 | None:intergenic | 45.0% | |
| TCGGACAACAAATCGGTACT+TGG | + | chr8_4:18612984-18613003 | None:intergenic | 45.0% | |
| !! | TAGTCGGGTTGAATCCACAA+CGG | - | chr8_4:18613427-18613446 | Msa1317390:intron | 45.0% |
| CATCATCTTCCATGAAGACC+TGG | - | chr8_4:18613467-18613486 | Msa1317390:intron | 45.0% | |
| CTCACATAACCAGGTCTTCA+TGG | + | chr8_4:18613479-18613498 | None:intergenic | 45.0% | |
| ! | AGAGGGACATATGAGTTGGA+GGG | + | chr8_4:18613738-18613757 | None:intergenic | 45.0% |
| ! | AAGAGGGACATATGAGTTGG+AGG | + | chr8_4:18613739-18613758 | None:intergenic | 45.0% |
| GGAAAGAGGGACATATGAGT+TGG | + | chr8_4:18613742-18613761 | None:intergenic | 45.0% | |
| ! | TTGTGCCACTATGTCCTTGT+TGG | + | chr8_4:18613896-18613915 | None:intergenic | 45.0% |
| ATAGTGTCCGCTAGTATTGC+TGG | - | chr8_4:18613916-18613935 | Msa1317390:CDS | 45.0% | |
| TCTCATGAGCTACCACACTT+TGG | - | chr8_4:18613964-18613983 | Msa1317390:CDS | 45.0% | |
| CCTACTGAAAGACCAAAGTG+TGG | + | chr8_4:18613979-18613998 | None:intergenic | 45.0% | |
| ! | CCACACTTTGGTCTTTCAGT+AGG | - | chr8_4:18613976-18613995 | Msa1317390:CDS | 45.0% |
| GGCCTTACAAATTATGCTGC+AGG | - | chr8_4:18613997-18614016 | Msa1317390:CDS | 45.0% | |
| ATGTGACCAGCTTATTGCAC+TGG | - | chr8_4:18614098-18614117 | Msa1317390:intron | 45.0% | |
| TTATTGCACTGGACTCCTCT+TGG | - | chr8_4:18614109-18614128 | Msa1317390:intron | 45.0% | |
| AAGTGTCTTCAGAACACGAC+GGG | + | chr8_4:18614135-18614154 | None:intergenic | 45.0% | |
| CAAGTGTCTTCAGAACACGA+CGG | + | chr8_4:18614136-18614155 | None:intergenic | 45.0% | |
| GAAGACACTTGAGATGGATG+AGG | - | chr8_4:18614145-18614164 | Msa1317390:intron | 45.0% | |
| ! | TGAGATGGATGAGGAGTATG+AGG | - | chr8_4:18614154-18614173 | Msa1317390:intron | 45.0% |
| ! | GAGATGGATGAGGAGTATGA+GGG | - | chr8_4:18614155-18614174 | Msa1317390:intron | 45.0% |
| GGAGTATGAGGGAAATGTTG+AGG | - | chr8_4:18614166-18614185 | Msa1317390:intron | 45.0% | |
| !! | GGTCTTGTTAAGACCACTAC+TGG | - | chr8_4:18614338-18614357 | Msa1317390:intron | 45.0% |
| AAAGACACGGTTTCCAGTAG+TGG | + | chr8_4:18614354-18614373 | None:intergenic | 45.0% | |
| ACTACTGGAAACCGTGTCTT+TGG | - | chr8_4:18614353-18614372 | Msa1317390:intron | 45.0% | |
| ! | GCAAACCTTTTGTCACTGTG+AGG | + | chr8_4:18614504-18614523 | None:intergenic | 45.0% |
| CACAGTGACAAAAGGTTTGC+TGG | - | chr8_4:18614504-18614523 | Msa1317390:intron | 45.0% | |
| !! | AAGGTTTGCTGGGTTTGACA+AGG | - | chr8_4:18614515-18614534 | Msa1317390:intron | 45.0% |
| CACCGCAAGTATATCTTTGG+GGG | - | chr8_4:18614564-18614583 | Msa1317390:intron | 45.0% | |
| GTCCCCCAAAGATATACTTG+CGG | + | chr8_4:18614569-18614588 | None:intergenic | 45.0% | |
| TGTAGGATCAGCACGAATTG+CGG | + | chr8_4:18614818-18614837 | None:intergenic | 45.0% | |
| AGGCTCCAAAACAACACAAG+AGG | - | chr8_4:18614857-18614876 | Msa1317390:intron | 45.0% | |
| AGAAGCTTACCTATGAGGAG+CGG | - | chr8_4:18614990-18615009 | Msa1317390:intron | 45.0% | |
| GCATCACTCTGATGCATAAC+CGG | + | chr8_4:18615440-18615459 | None:intergenic | 45.0% | |
| !! | GAGTTGATGGGAAGAGTGTG+AGG | + | chr8_4:18612450-18612469 | None:intergenic | 50.0% |
| ! | CTGGATCCGCAAGAGTTGAT+GGG | + | chr8_4:18612462-18612481 | None:intergenic | 50.0% |
| ! | TCCACAACGGACAACCCTTT+TGG | - | chr8_4:18613440-18613459 | Msa1317390:intron | 50.0% |
| ACCAAAAGGGTTGTCCGTTG+TGG | + | chr8_4:18613444-18613463 | None:intergenic | 50.0% | |
| AGGAGTCCAGTGCAATAAGC+TGG | + | chr8_4:18614107-18614126 | None:intergenic | 50.0% | |
| ! | ACATCAAGGAGAGCACGGAA+TGG | + | chr8_4:18614317-18614336 | None:intergenic | 50.0% |
| TTCCGTGCTCTCCTTGATGT+TGG | - | chr8_4:18614317-18614336 | Msa1317390:intron | 50.0% | |
| GACCAACATCAAGGAGAGCA+CGG | + | chr8_4:18614322-18614341 | None:intergenic | 50.0% | |
| ! | CCTTCAAGGCACCAAAGACA+CGG | + | chr8_4:18614367-18614386 | None:intergenic | 50.0% |
| GAAGAAAGAGCTCGATGCTG+AGG | - | chr8_4:18614539-18614558 | Msa1317390:intron | 50.0% | |
| CTCAGGCTCATCTTCAGTCA+AGG | + | chr8_4:18614713-18614732 | None:intergenic | 50.0% | |
| ! | AATTGAGGCAGATGGCCTTG+AGG | - | chr8_4:18614771-18614790 | Msa1317390:intron | 50.0% |
| CCTTCTTGTACAGCTCCTCA+AGG | + | chr8_4:18614789-18614808 | None:intergenic | 50.0% | |
| CCTTGAGGAGCTGTACAAGA+AGG | - | chr8_4:18614786-18614805 | Msa1317390:intron | 50.0% | |
| ! | CTTAGCTTTCCGCTCCTCAT+AGG | + | chr8_4:18615002-18615021 | None:intergenic | 50.0% |
| TGAGGAGCGGAAAGCTAAGT+TGG | - | chr8_4:18615003-18615022 | Msa1317390:intron | 50.0% | |
| !! | TGCTGTTGATGATGAGGACG+AGG | - | chr8_4:18615051-18615070 | Msa1317390:intron | 50.0% |
| TGTGTTTGCAGCCCAAGTGA+TGG | - | chr8_4:18615095-18615114 | Msa1317390:intron | 50.0% | |
| TGAGGGAGCTAGGGTTTGAG+AGG | + | chr8_4:18612432-18612451 | None:intergenic | 55.0% | |
| ! | GGAAGAGTGTGAGGGAGCTA+GGG | + | chr8_4:18612441-18612460 | None:intergenic | 55.0% |
| GCTGGATCCGCAAGAGTTGA+TGG | + | chr8_4:18612463-18612482 | None:intergenic | 55.0% | |
| TCCAGCTGCGTCTGCAACAA+TGG | - | chr8_4:18612477-18612496 | Msa1317390:three_prime_UTR | 55.0% | |
| ACCATTGTTGCAGACGCAGC+TGG | + | chr8_4:18612481-18612500 | None:intergenic | 55.0% | |
| !! | CCGTGTCTTTGGTGCCTTGA+AGG | - | chr8_4:18614364-18614383 | Msa1317390:intron | 55.0% |
| GGTTTACAGGGAGCCCTAGA+TGG | - | chr8_4:18614465-18614484 | Msa1317390:intron | 55.0% | |
| TTACAGGGAGCCCTAGATGG+TGG | - | chr8_4:18614468-18614487 | Msa1317390:intron | 55.0% | |
| ! | GGGAAGAGTGTGAGGGAGCT+AGG | + | chr8_4:18612442-18612461 | None:intergenic | 60.0% |
| TCAGAACACGACGGGCCAAG+AGG | + | chr8_4:18614127-18614146 | None:intergenic | 60.0% | |
| CAGTTGAGCCAGCTGAGTCC+AGG | - | chr8_4:18614288-18614307 | Msa1317390:intron | 60.0% | |
| TTGAGCCAGCTGAGTCCAGG+AGG | - | chr8_4:18614291-18614310 | Msa1317390:intron | 60.0% | |
| AATGGCCTCCTGGACTCAGC+TGG | + | chr8_4:18614299-18614318 | None:intergenic | 60.0% | |
| ! | GGGAGCCCTAGATGGTGGTT+TGG | - | chr8_4:18614473-18614492 | Msa1317390:intron | 60.0% |
| GATCAGCACGAATTGCGGCG+TGG | + | chr8_4:18614813-18614832 | None:intergenic | 60.0% | |
| ! | GAGAGCACGGAATGGCCTCC+TGG | + | chr8_4:18614309-18614328 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 18612429 | 18615489 | 18612429 | ID=Msa1317390;Name=Msa1317390 |
| chr8_4 | mRNA | 18612429 | 18615489 | 18612429 | ID=Msa1317390-mRNA-1;Parent=Msa1317390;Name=Msa1317390-mRNA-1;_AED=0.05;_eAED=0.05;_QI=67|0.87|0.88|1|1|1|9|402|315 |
| chr8_4 | exon | 18612429 | 18612939 | 18612429 | ID=Msa1317390-mRNA-1:exon:6912;Parent=Msa1317390-mRNA-1 |
| chr8_4 | exon | 18613040 | 18613209 | 18613040 | ID=Msa1317390-mRNA-1:exon:6911;Parent=Msa1317390-mRNA-1 |
| chr8_4 | exon | 18613310 | 18613444 | 18613310 | ID=Msa1317390-mRNA-1:exon:6910;Parent=Msa1317390-mRNA-1 |
| chr8_4 | exon | 18613533 | 18613649 | 18613533 | ID=Msa1317390-mRNA-1:exon:6909;Parent=Msa1317390-mRNA-1 |
| chr8_4 | exon | 18613731 | 18613810 | 18613731 | ID=Msa1317390-mRNA-1:exon:6908;Parent=Msa1317390-mRNA-1 |
| chr8_4 | exon | 18613900 | 18614026 | 18613900 | ID=Msa1317390-mRNA-1:exon:6907;Parent=Msa1317390-mRNA-1 |
| chr8_4 | exon | 18614867 | 18615003 | 18614867 | ID=Msa1317390-mRNA-1:exon:6906;Parent=Msa1317390-mRNA-1 |
| chr8_4 | exon | 18615104 | 18615173 | 18615104 | ID=Msa1317390-mRNA-1:exon:6905;Parent=Msa1317390-mRNA-1 |
| chr8_4 | exon | 18615420 | 18615489 | 18615420 | ID=Msa1317390-mRNA-1:exon:6904;Parent=Msa1317390-mRNA-1 |
| chr8_4 | five_prime_UTR | 18615423 | 18615489 | 18615423 | ID=Msa1317390-mRNA-1:five_prime_utr;Parent=Msa1317390-mRNA-1 |
| chr8_4 | CDS | 18615420 | 18615422 | 18615420 | ID=Msa1317390-mRNA-1:cds;Parent=Msa1317390-mRNA-1 |
| chr8_4 | CDS | 18615104 | 18615173 | 18615104 | ID=Msa1317390-mRNA-1:cds;Parent=Msa1317390-mRNA-1 |
| chr8_4 | CDS | 18614867 | 18615003 | 18614867 | ID=Msa1317390-mRNA-1:cds;Parent=Msa1317390-mRNA-1 |
| chr8_4 | CDS | 18613900 | 18614026 | 18613900 | ID=Msa1317390-mRNA-1:cds;Parent=Msa1317390-mRNA-1 |
| chr8_4 | CDS | 18613731 | 18613810 | 18613731 | ID=Msa1317390-mRNA-1:cds;Parent=Msa1317390-mRNA-1 |
| chr8_4 | CDS | 18613533 | 18613649 | 18613533 | ID=Msa1317390-mRNA-1:cds;Parent=Msa1317390-mRNA-1 |
| chr8_4 | CDS | 18613310 | 18613444 | 18613310 | ID=Msa1317390-mRNA-1:cds;Parent=Msa1317390-mRNA-1 |
| chr8_4 | CDS | 18613040 | 18613209 | 18613040 | ID=Msa1317390-mRNA-1:cds;Parent=Msa1317390-mRNA-1 |
| chr8_4 | CDS | 18612831 | 18612939 | 18612831 | ID=Msa1317390-mRNA-1:cds;Parent=Msa1317390-mRNA-1 |
| chr8_4 | three_prime_UTR | 18612429 | 18612830 | 18612429 | ID=Msa1317390-mRNA-1:three_prime_utr;Parent=Msa1317390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
