AlfalfaGEDB | Msa0738420

M. sativa cultivar zhongmu-4 / Msa0738420

KEGG: K03249
GO: GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009846 GO:0009856 GO:0009987 GO:0010033 GO:0010154 GO:0010467 GO:0016020 GO:0019538 GO:0022414 GO:0031369 GO:0032501 GO:0032502 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0061458 GO:0071541 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901700
PFAM: PF01398.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0738420	XP_003616582.1	97.535	284	7	0	1	284	1	284	0.0	572

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0738420	sp\|O04202\|EIF3F_ARATH	71.478	291	75	1	2	284	3	293	9.82e-149	421

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0738420	G7KBY4	97.535	284	7	0	1	284	1	284	0.0	572

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0094210	Msa0738420	0.832918	7.185622e-56	-8.615850e-47
Msa0188740	Msa0738420	0.822403	2.413930e-53	-8.615850e-47
Msa0388520	Msa0738420	0.830101	3.550571e-55	-8.615850e-47
Msa0582070	Msa0738420	0.806520	7.905805e-50	-8.615850e-47
Msa0621190	Msa0738420	0.814044	1.882722e-51	-8.615850e-47
Msa0738420	Msa0784830	0.837924	3.899718e-57	-8.615850e-47
Msa0738420	Msa0930360	0.801594	8.364973e-49	-8.615850e-47
Msa0738420	Msa1363910	0.839446	1.577268e-57	-8.615850e-47
Msa0738420	Msa1387750	0.808297	3.319445e-50	-8.615850e-47
Msa0738420	Msa1449160	0.802229	6.195317e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0738420	MtrunA17_Chr5g0436671	97.535	284	7	0	1	284	1	284	0.0	572
Msa0738420	MtrunA17_Chr3g0113201	88.194	288	30	1	1	284	1	288	0.0	511
Msa0738420	MtrunA17_Chr3g0113191	31.206	282	177	6	10	278	8	285	2.23e-32	121
Msa0738420	MtrunA17_Chr5g0436641	30.996	271	170	6	21	278	19	285	1.29e-31	119
Msa0738420	MtrunA17_Chr5g0436681	70.000	40	12	0	178	217	16	55	1.79e-13	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0738420	AT2G39990.1	71.478	291	75	1	2	284	3	293	9.99e-150	421
Msa0738420	AT3G11270.2	31.541	279	177	6	10	278	8	282	3.56e-34	126
Msa0738420	AT3G11270.1	31.206	282	177	6	10	278	8	285	9.85e-34	125
Msa0738420	AT5G05780.2	30.108	279	181	6	10	278	8	282	2.41e-31	119
Msa0738420	AT5G05780.1	29.787	282	181	6	10	278	8	285	8.40e-31	117

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Find 95 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCCATCTGATTTAGA+AGG	0.339006	5_1:+56190987	Msa0738420:CDS
AAACCCTAGCATTCTTTCTT+TGG	0.274031	5_1:+56187551	Msa0738420:five_prime_UTR
AAACGGAGAATGAGGTTCCA+AGG	0.556103	5_1:+56191673	Msa0738420:three_prime_UTR
AAATCCCATCTGATTTAGAA+GGG	0.606690	5_1:+56190988	Msa0738420:CDS
AAATGCCGAGGAGGGCATTT+TGG	0.194171	5_1:-56191144	None:intergenic
AAATGTATATCAGATGTTGT+AGG	0.590500	5_1:+56191113	Msa0738420:CDS
AACAGTCAAATGTATTGGGT+TGG	0.517495	5_1:-56189061	None:intergenic
AACATCATTGACGTATTTGT+AGG	0.400467	5_1:-56191054	None:intergenic
AACCTTCCCGGATAAGGTTT+GGG	0.379305	5_1:-56187667	None:intergenic
AACGAGAGGATGAACCTTCC+CGG	0.421025	5_1:-56187679	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAATGCAATCTCAGAA+AGG	-	chr5_1:56187873-56187892	None:intergenic	30.0%
TATGAAGCAATGTTGTTGAA+TGG	+	chr5_1:56187978-56187997	Msa0738420:intron	30.0%
GGAACTGTACATATTTCTTA+AGG	+	chr5_1:56188120-56188139	Msa0738420:intron	30.0%
TACATCGTCAATGTTAAGTT+TGG	+	chr5_1:56188372-56188391	Msa0738420:intron	30.0%
ACATCGTCAATGTTAAGTTT+GGG	+	chr5_1:56188373-56188392	Msa0738420:intron	30.0%
GACGAGTTTAGAAAAATCAT+GGG	-	chr5_1:56188450-56188469	None:intergenic	30.0%
TGACGAGTTTAGAAAAATCA+TGG	-	chr5_1:56188451-56188470	None:intergenic	30.0%
CATTGTTGATATCTAGAAGA+AGG	+	chr5_1:56188598-56188617	Msa0738420:intron	30.0%
CTTCTCGAGAATAAAATTCA+TGG	-	chr5_1:56189038-56189057	None:intergenic	30.0%
TGTCAACAGTCAAATGTATT+GGG	-	chr5_1:56189068-56189087	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	56187499	56191733	56187499	ID=Msa0738420;Name=Msa0738420
chr5_1	mRNA	56187499	56191733	56187499	ID=Msa0738420-mRNA-1;Parent=Msa0738420;Name=Msa0738420-mRNA-1;_AED=0.05;_eAED=0.05;_QI=128\|1\|1\|1\|1\|1\|5\|260\|284
chr5_1	exon	56187499	56187845	56187499	ID=Msa0738420-mRNA-1:exon:15919;Parent=Msa0738420-mRNA-1
chr5_1	exon	56188817	56188896	56188817	ID=Msa0738420-mRNA-1:exon:15920;Parent=Msa0738420-mRNA-1
chr5_1	exon	56188993	56189222	56188993	ID=Msa0738420-mRNA-1:exon:15921;Parent=Msa0738420-mRNA-1
chr5_1	exon	56190958	56191193	56190958	ID=Msa0738420-mRNA-1:exon:15922;Parent=Msa0738420-mRNA-1
chr5_1	exon	56191384	56191733	56191384	ID=Msa0738420-mRNA-1:exon:15923;Parent=Msa0738420-mRNA-1
chr5_1	five_prime_UTR	56187499	56187626	56187499	ID=Msa0738420-mRNA-1:five_prime_utr;Parent=Msa0738420-mRNA-1
chr5_1	CDS	56187627	56187845	56187627	ID=Msa0738420-mRNA-1:cds;Parent=Msa0738420-mRNA-1
chr5_1	CDS	56188817	56188896	56188817	ID=Msa0738420-mRNA-1:cds;Parent=Msa0738420-mRNA-1
chr5_1	CDS	56188993	56189222	56188993	ID=Msa0738420-mRNA-1:cds;Parent=Msa0738420-mRNA-1
chr5_1	CDS	56190958	56191193	56190958	ID=Msa0738420-mRNA-1:cds;Parent=Msa0738420-mRNA-1
chr5_1	CDS	56191384	56191473	56191384	ID=Msa0738420-mRNA-1:cds;Parent=Msa0738420-mRNA-1
chr5_1	three_prime_UTR	56191474	56191733	56191474	ID=Msa0738420-mRNA-1:three_prime_utr;Parent=Msa0738420-mRNA-1

Gene Sequence

>Msa0738420

ATGGCGGCGAGTAAGCGCACTGTGTTGCAATTCTCTTCTTCCCAAACCTTATCCGGGAAGGTTCATCCTCTCGTTATCTTCAACATCTGTGATTGCTATGTCCGTCGTCCTGACCAAGCGGAGCGCGTCATCGGAACACTCCTCGGCTCCGTTCTCCCCGACGGAACCGTCGATATCCGTAATTCATACGCTGTTCCGCACAATGAGTCCGTTGATCAGGTTGCTTTGGATATTGAGTACCACCATAATATGTTACTATCCCACCAAAAAGTGAATCCCAAGGAAGCTATAGTTGGATGGTATTCAACTGGTCTTGGAGTAACCGGTGGCAGTGCATTAATCCATGAATTTTATTCTCGAGAAGTATCCAACCCAATACATTTGACTGTTGACACAGGATTTGCAGATGGAGAGGGCACCGTGAAAGCATATGTTTCAAACAATTTATCACTTGGAGATCAGCAAATTGCTGCACAGTTTCAAGAAATTCCTTTGGATCTTCGTATGGTTGAAGCTGAGCGCATTGGATTTGATAATCTGAAGTCAACTTCTGTTGACAAAATCCCATCTGATTTAGAAGGGATGGAAGCATCAATGACACATCTATTGGCCTTGGTTGATGACACCTACAAATACGTCAATGATGTTGTGGAAGGGCGTGTTGACCCAGACAACAAAATTGGGAAATGTATATCAGATGTTGTAGGTTCCCTTCCCAAAATGCCCTCCTCGGCATTTGATAAGCTTGTGAATGACAGCTTGCAGGATCATTTGCTCATGGTATATTTATCTAGCATCACAAGGACACAGCTCAGCCTGGCTGAAAAATTGAACACCGCTGCTCAGATTCTGTGA

Protein sequence

>Msa0738420

MAASKRTVLQFSSSQTLSGKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHNESVDQVALDIEYHHNMLLSHQKVNPKEAIVGWYSTGLGVTGGSALIHEFYSREVSNPIHLTVDTGFADGEGTVKAYVSNNLSLGDQQIAAQFQEIPLDLRMVEAERIGFDNLKSTSVDKIPSDLEGMEASMTHLLALVDDTYKYVNDVVEGRVDPDNKIGKCISDVVGSLPKMPSSAFDKLVNDSLQDHLLMVYLSSITRTQLSLAEKLNTAAQIL*