Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738420 | XP_003616582.1 | 97.535 | 284 | 7 | 0 | 1 | 284 | 1 | 284 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738420 | sp|O04202|EIF3F_ARATH | 71.478 | 291 | 75 | 1 | 2 | 284 | 3 | 293 | 9.82e-149 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738420 | G7KBY4 | 97.535 | 284 | 7 | 0 | 1 | 284 | 1 | 284 | 0.0 | 572 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094210 | Msa0738420 | 0.832918 | 7.185622e-56 | -8.615850e-47 |
| Msa0621190 | Msa0738420 | 0.814044 | 1.882722e-51 | -8.615850e-47 |
| Msa0738420 | Msa0784830 | 0.837924 | 3.899718e-57 | -8.615850e-47 |
| Msa0738420 | Msa0930360 | 0.801594 | 8.364973e-49 | -8.615850e-47 |
| Msa0738420 | Msa1363910 | 0.839446 | 1.577268e-57 | -8.615850e-47 |
| Msa0738420 | Msa1387750 | 0.808297 | 3.319445e-50 | -8.615850e-47 |
| Msa0738420 | Msa1449160 | 0.802229 | 6.195317e-49 | -8.615850e-47 |
| Msa0188740 | Msa0738420 | 0.822403 | 2.413930e-53 | -8.615850e-47 |
| Msa0388520 | Msa0738420 | 0.830101 | 3.550571e-55 | -8.615850e-47 |
| Msa0582070 | Msa0738420 | 0.806520 | 7.905805e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738420 | MtrunA17_Chr5g0436671 | 97.535 | 284 | 7 | 0 | 1 | 284 | 1 | 284 | 0.0 | 572 |
| Msa0738420 | MtrunA17_Chr3g0113201 | 88.194 | 288 | 30 | 1 | 1 | 284 | 1 | 288 | 0.0 | 511 |
| Msa0738420 | MtrunA17_Chr3g0113191 | 31.206 | 282 | 177 | 6 | 10 | 278 | 8 | 285 | 2.23e-32 | 121 |
| Msa0738420 | MtrunA17_Chr5g0436641 | 30.996 | 271 | 170 | 6 | 21 | 278 | 19 | 285 | 1.29e-31 | 119 |
| Msa0738420 | MtrunA17_Chr5g0436681 | 70.000 | 40 | 12 | 0 | 178 | 217 | 16 | 55 | 1.79e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738420 | AT2G39990.1 | 71.478 | 291 | 75 | 1 | 2 | 284 | 3 | 293 | 9.99e-150 | 421 |
| Msa0738420 | AT3G11270.2 | 31.541 | 279 | 177 | 6 | 10 | 278 | 8 | 282 | 3.56e-34 | 126 |
| Msa0738420 | AT3G11270.1 | 31.206 | 282 | 177 | 6 | 10 | 278 | 8 | 285 | 9.85e-34 | 125 |
| Msa0738420 | AT5G05780.2 | 30.108 | 279 | 181 | 6 | 10 | 278 | 8 | 282 | 2.41e-31 | 119 |
| Msa0738420 | AT5G05780.1 | 29.787 | 282 | 181 | 6 | 10 | 278 | 8 | 285 | 8.40e-31 | 117 |
Find 95 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGCCGAGGAGGGCATTT+TGG | 0.194171 | 5_1:-56191144 | None:intergenic |
| GTTGACCCAGACAACAAAAT+TGG | 0.240414 | 5_1:+56191089 | Msa0738420:CDS |
| GGTGGGATAGTAACATATTA+TGG | 0.265911 | 5_1:-56188840 | None:intergenic |
| AAACCCTAGCATTCTTTCTT+TGG | 0.274031 | 5_1:+56187551 | Msa0738420:five_prime_UTR |
| TCTTCTTCCCAAACCTTATC+CGG | 0.325083 | 5_1:+56187660 | Msa0738420:CDS |
| CTTCTCGAGAATAAAATTCA+TGG | 0.333882 | 5_1:-56189035 | None:intergenic |
| AAAATCCCATCTGATTTAGA+AGG | 0.339006 | 5_1:+56190987 | Msa0738420:CDS |
| CCATCCAACTATAGCTTCCT+TGG | 0.350464 | 5_1:-56188875 | None:intergenic |
| GAACCTTCCCGGATAAGGTT+TGG | 0.364685 | 5_1:-56187668 | None:intergenic |
| AACCTTCCCGGATAAGGTTT+GGG | 0.379305 | 5_1:-56187667 | None:intergenic |
| GCTTGTGAATGACAGCTTGC+AGG | 0.379545 | 5_1:+56191172 | Msa0738420:CDS |
| TGCAGGTATTCAACTGGTCT+TGG | 0.400141 | 5_1:+56188988 | Msa0738420:intron |
| AACATCATTGACGTATTTGT+AGG | 0.400467 | 5_1:-56191054 | None:intergenic |
| CGCTTACTCGCCGCCATGAT+CGG | 0.404302 | 5_1:-56187621 | None:intergenic |
| GCACAATGAGTCCGTTGATC+AGG | 0.413254 | 5_1:+56187824 | Msa0738420:CDS |
| GTTTGAAACATATGCTTTCA+CGG | 0.413837 | 5_1:-56189112 | None:intergenic |
| TGTACCACAAGAGGTCTAAT+AGG | 0.418037 | 5_1:+56191698 | Msa0738420:three_prime_UTR |
| AACGAGAGGATGAACCTTCC+CGG | 0.421025 | 5_1:-56187679 | None:intergenic |
| GTGTCAACAGTCAAATGTAT+TGG | 0.427871 | 5_1:-56189066 | None:intergenic |
| GCGGAACAGCGTATGAATTA+CGG | 0.433298 | 5_1:-56187803 | None:intergenic |
| AGGATGAACCTTCCCGGATA+AGG | 0.434008 | 5_1:-56187673 | None:intergenic |
| AGCATCAATGACACATCTAT+TGG | 0.440036 | 5_1:+56191016 | Msa0738420:CDS |
| GTCATATCTTTGAAATAAAA+CGG | 0.444829 | 5_1:+56191656 | Msa0738420:three_prime_UTR |
| CATCCAACTATAGCTTCCTT+GGG | 0.444926 | 5_1:-56188874 | None:intergenic |
| ACAGTTTCAAGAAATTCCTT+TGG | 0.446019 | 5_1:+56189167 | Msa0738420:CDS |
| TCAACTGGTCTTGGAGTAAC+CGG | 0.447005 | 5_1:+56188997 | Msa0738420:CDS |
| TTCCGATGACGCGCTCCGCT+TGG | 0.452042 | 5_1:-56187740 | None:intergenic |
| TTGAAATAAAACGGAGAATG+AGG | 0.452781 | 5_1:+56191665 | Msa0738420:three_prime_UTR |
| ACTTCGTGCAGGTATTCAAC+TGG | 0.457179 | 5_1:+56188982 | Msa0738420:intron |
| AATGACACATCTATTGGCCT+TGG | 0.460926 | 5_1:+56191022 | Msa0738420:CDS |
| ATGACGCGCTCCGCTTGGTC+AGG | 0.463914 | 5_1:-56187735 | None:intergenic |
| ACCTCTTGTGGTACAAACCT+TGG | 0.473843 | 5_1:-56191690 | None:intergenic |
| GTTTCAAACAATTTATCACT+TGG | 0.476789 | 5_1:+56189126 | Msa0738420:CDS |
| TTGACCCAGACAACAAAATT+GGG | 0.481778 | 5_1:+56191090 | Msa0738420:CDS |
| CCCATCTGATTTAGAAGGGA+TGG | 0.482272 | 5_1:+56190992 | Msa0738420:CDS |
| CGGATATCGACGGTTCCGTC+GGG | 0.482652 | 5_1:-56187783 | None:intergenic |
| CTGAATCGAAGCACCGATCA+TGG | 0.495976 | 5_1:+56187608 | Msa0738420:exon |
| CACAAGGACACAGCTCAGCC+TGG | 0.504225 | 5_1:+56191416 | Msa0738420:CDS |
| AATCCCAAGGAAGCTATAGT+TGG | 0.505204 | 5_1:+56188871 | Msa0738420:CDS |
| GAGGAAGACAGCACGAGAAT+CGG | 0.509440 | 5_1:-56187579 | None:intergenic |
| AATTCCTTTGGATCTTCGTA+TGG | 0.511279 | 5_1:+56189179 | Msa0738420:CDS |
| TGTCAACAGTCAAATGTATT+GGG | 0.515694 | 5_1:-56189065 | None:intergenic |
| GACCAAGCGGAGCGCGTCAT+CGG | 0.516314 | 5_1:+56187738 | Msa0738420:CDS |
| GACGGTTCCGTCGGGGAGAA+CGG | 0.516476 | 5_1:-56187775 | None:intergenic |
| AACAGTCAAATGTATTGGGT+TGG | 0.517495 | 5_1:-56189061 | None:intergenic |
| TCCATCCCTTCTAAATCAGA+TGG | 0.517752 | 5_1:-56190993 | None:intergenic |
| TGAGGTCTCTTTGTAGTGAG+TGG | 0.520410 | 5_1:+56191610 | Msa0738420:three_prime_UTR |
| CTTCTTCCCAAACCTTATCC+GGG | 0.521911 | 5_1:+56187661 | Msa0738420:CDS |
| ACGGATATCGACGGTTCCGT+CGG | 0.524689 | 5_1:-56187784 | None:intergenic |
| ATGGATTAATGCACTGCCAC+CGG | 0.529881 | 5_1:-56189016 | None:intergenic |
| TTCCCAAACCTTATCCGGGA+AGG | 0.531499 | 5_1:+56187665 | Msa0738420:CDS |
| CGCGTCATCGGAACACTCCT+CGG | 0.535274 | 5_1:+56187750 | Msa0738420:CDS |
| CTCGGCTCCGTTCTCCCCGA+CGG | 0.546112 | 5_1:+56187768 | Msa0738420:CDS |
| TATTGAGAAATATCACAAAA+CGG | 0.546724 | 5_1:-56191513 | None:intergenic |
| CAAATACGTCAATGATGTTG+TGG | 0.553283 | 5_1:+56191058 | Msa0738420:CDS |
| AAACGGAGAATGAGGTTCCA+AGG | 0.556103 | 5_1:+56191673 | Msa0738420:three_prime_UTR |
| AGCTTATCAAATGCCGAGGA+GGG | 0.561871 | 5_1:-56191152 | None:intergenic |
| TACGTCAATGATGTTGTGGA+AGG | 0.564423 | 5_1:+56191062 | Msa0738420:CDS |
| CCATCCCTTCTAAATCAGAT+GGG | 0.565146 | 5_1:-56190992 | None:intergenic |
| GGTGCCAAAGAAAGAATGCT+AGG | 0.565978 | 5_1:-56187555 | None:intergenic |
| AGCACCTATTAGACCTCTTG+TGG | 0.577301 | 5_1:-56191702 | None:intergenic |
| TCCAAGGTTTGTACCACAAG+AGG | 0.577495 | 5_1:+56191689 | Msa0738420:three_prime_UTR |
| TGATCGGTGCTTCGATTCAG+AGG | 0.580372 | 5_1:-56187605 | None:intergenic |
| CACAGGATTTGCAGATGGAG+AGG | 0.582511 | 5_1:+56189086 | Msa0738420:CDS |
| CCAAGGAAGCTATAGTTGGA+TGG | 0.584918 | 5_1:+56188875 | Msa0738420:CDS |
| AAATGTATATCAGATGTTGT+AGG | 0.590500 | 5_1:+56191113 | Msa0738420:CDS |
| CCTTCCCAAAATGCCCTCCT+CGG | 0.591186 | 5_1:+56191139 | Msa0738420:CDS |
| GTTGACACAGGATTTGCAGA+TGG | 0.595147 | 5_1:+56189081 | Msa0738420:CDS |
| ATTATGTGATCAAGTGAACA+AGG | 0.597955 | 5_1:+56187492 | None:intergenic |
| ATGGTTGAAGCTGAGCGCAT+TGG | 0.598696 | 5_1:+56189198 | Msa0738420:CDS |
| AAATCCCATCTGATTTAGAA+GGG | 0.606690 | 5_1:+56190988 | Msa0738420:CDS |
| AAGCTTATCAAATGCCGAGG+AGG | 0.617375 | 5_1:-56191153 | None:intergenic |
| ACAGGATTTGCAGATGGAGA+GGG | 0.622352 | 5_1:+56189087 | Msa0738420:CDS |
| GAAGACAGCACGAGAATCGG+TGG | 0.628790 | 5_1:-56187576 | None:intergenic |
| TATGTGATCAAGTGAACAAG+GGG | 0.629436 | 5_1:+56187494 | None:intergenic |
| TGTCCGTCGTCCTGACCAAG+CGG | 0.631366 | 5_1:+56187725 | Msa0738420:CDS |
| CACAAGCTTATCAAATGCCG+AGG | 0.633546 | 5_1:-56191156 | None:intergenic |
| CGTCGGGGAGAACGGAGCCG+AGG | 0.634190 | 5_1:-56187767 | None:intergenic |
| ACGTCAATGATGTTGTGGAA+GGG | 0.634514 | 5_1:+56191063 | Msa0738420:CDS |
| ATACATTTGACTGTTGACAC+AGG | 0.640476 | 5_1:+56189069 | Msa0738420:CDS |
| TCAACCATACGAAGATCCAA+AGG | 0.640847 | 5_1:-56189183 | None:intergenic |
| GTGCCAAAGAAAGAATGCTA+GGG | 0.655222 | 5_1:-56187554 | None:intergenic |
| GCTCCGCTTGGTCAGGACGA+CGG | 0.661779 | 5_1:-56187728 | None:intergenic |
| TTTGTAGGTGTCATCAACCA+AGG | 0.664422 | 5_1:-56191039 | None:intergenic |
| TGATCAACGGACTCATTGTG+CGG | 0.684945 | 5_1:-56187822 | None:intergenic |
| GGGATAGTAACATATTATGG+TGG | 0.686225 | 5_1:-56188837 | None:intergenic |
| CAGATGTTGAAGATAACGAG+AGG | 0.689403 | 5_1:-56187693 | None:intergenic |
| ACTGGTCTTGGAGTAACCGG+TGG | 0.692326 | 5_1:+56189000 | Msa0738420:CDS |
| GTATGAATTACGGATATCGA+CGG | 0.694472 | 5_1:-56187793 | None:intergenic |
| TGCTTCGATTCAGAGGTGTG+AGG | 0.706009 | 5_1:-56187598 | None:intergenic |
| TTATGTGATCAAGTGAACAA+GGG | 0.707666 | 5_1:+56187493 | None:intergenic |
| CAATCACAGAATCTGAGCAG+CGG | 0.707909 | 5_1:-56191454 | None:intergenic |
| GGATATCGACGGTTCCGTCG+GGG | 0.709050 | 5_1:-56187782 | None:intergenic |
| TATATTTATCTAGCATCACA+AGG | 0.712944 | 5_1:+56191400 | Msa0738420:CDS |
| AATCGAAGCACCGATCATGG+CGG | 0.745697 | 5_1:+56187611 | Msa0738420:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTAATTTAAAATGAAAATT+TGG | + | chr5_1:56188326-56188345 | Msa0738420:intron | 10.0% |
| !!! | TTTCATTTACTTTTATTAAT+AGG | + | chr5_1:56188795-56188814 | Msa0738420:intron | 10.0% |
| !! | ATAAATTTAATAAATTGTAG+GGG | + | chr5_1:56191235-56191254 | Msa0738420:intron | 10.0% |
| !! | TAGATTGATATACATATATT+TGG | + | chr5_1:56188550-56188569 | Msa0738420:intron | 15.0% |
| !! | AAATAAAACTGTATATTTGA+TGG | + | chr5_1:56188621-56188640 | Msa0738420:intron | 15.0% |
| !! | TTGATTATCTTAAATACAAA+AGG | + | chr5_1:56188751-56188770 | Msa0738420:intron | 15.0% |
| !!! | CTTGTTTTGTAAATTTTTTT+TGG | + | chr5_1:56188917-56188936 | Msa0738420:intron | 15.0% |
| !!! | ATCATCTTTAAAATAAAACA+AGG | - | chr5_1:56190465-56190484 | None:intergenic | 15.0% |
| !! | AAATGGCTTATAAATTATAA+TGG | + | chr5_1:56190869-56190888 | Msa0738420:intron | 15.0% |
| !!! | AATTATGATAATAGTTCTTT+TGG | + | chr5_1:56191275-56191294 | Msa0738420:intron | 15.0% |
| !!! | TTAAGGAAAATGTTAAGTTT+TGG | + | chr5_1:56188137-56188156 | Msa0738420:intron | 20.0% |
| !!! | TAAGGAAAATGTTAAGTTTT+GGG | + | chr5_1:56188138-56188157 | Msa0738420:intron | 20.0% |
| !!! | TTAAAATGAAAATTTGGTGT+TGG | + | chr5_1:56188332-56188351 | Msa0738420:intron | 20.0% |
| !!! | AACTTGATGCATTTTTTAAT+TGG | - | chr5_1:56188474-56188493 | None:intergenic | 20.0% |
| !! | AAACCAACATTAAAAAAGTA+AGG | - | chr5_1:56188687-56188706 | None:intergenic | 20.0% |
| !!! | CTGTTTTATGTTTTTATCAA+AGG | + | chr5_1:56189258-56189277 | Msa0738420:intron | 20.0% |
| !!! | TTCACTTAGTGATTTTTTTA+TGG | + | chr5_1:56189554-56189573 | Msa0738420:intron | 20.0% |
| !! | AGAAATATCCTAAAATATGT+GGG | - | chr5_1:56190312-56190331 | None:intergenic | 20.0% |
| !! | AAGAAATATCCTAAAATATG+TGG | - | chr5_1:56190313-56190332 | None:intergenic | 20.0% |
| !!! | AGTTGCTTTAGAATAAAATT+AGG | + | chr5_1:56190341-56190360 | Msa0738420:intron | 20.0% |
| !! | TTAGAATAAAATTAGGTGTT+TGG | + | chr5_1:56190348-56190367 | Msa0738420:intron | 20.0% |
| !! | CTCAAATTTCTCTTATAAAT+AGG | - | chr5_1:56190641-56190660 | None:intergenic | 20.0% |
| !! | TCAACAAAAATTGATGTATT+TGG | - | chr5_1:56190700-56190719 | None:intergenic | 20.0% |
| !! | ATTTATGTATCACTTTATCA+TGG | + | chr5_1:56190801-56190820 | Msa0738420:intron | 20.0% |
| !!! | TATAATTTGTAGCTTTGAAA+TGG | + | chr5_1:56190852-56190871 | Msa0738420:intron | 20.0% |
| !!! | TTGCAGGTAATTTTAATTTT+GGG | + | chr5_1:56191188-56191207 | Msa0738420:intron | 20.0% |
| !!! | AATAAATGCAATTTTGCTTA+GGG | + | chr5_1:56191484-56191503 | Msa0738420:three_prime_UTR | 20.0% |
| !! | TATTGAGAAATATCACAAAA+CGG | - | chr5_1:56191516-56191535 | None:intergenic | 20.0% |
| !!! | TTTTGTGATATTTCTCAATA+TGG | + | chr5_1:56191516-56191535 | Msa0738420:three_prime_UTR | 20.0% |
| !!! | AGGTAATTTCATATTTTCTT+TGG | + | chr5_1:56191585-56191604 | Msa0738420:three_prime_UTR | 20.0% |
| !!! | GTCATATCTTTGAAATAAAA+CGG | + | chr5_1:56191656-56191675 | Msa0738420:three_prime_UTR | 20.0% |
| ! | TTCAAATTTCGCTATGTTAT+AGG | - | chr5_1:56188015-56188034 | None:intergenic | 25.0% |
| !! | AAGGAAAATGTTAAGTTTTG+GGG | + | chr5_1:56188139-56188158 | Msa0738420:intron | 25.0% |
| !! | AAATGCATCAAGTTTAAGTT+TGG | + | chr5_1:56188480-56188499 | Msa0738420:intron | 25.0% |
| !! | AAAACTGTATATTTGATGGT+TGG | + | chr5_1:56188625-56188644 | Msa0738420:intron | 25.0% |
| ! | AAAACTCACAAATATAGAGT+TGG | - | chr5_1:56188660-56188679 | None:intergenic | 25.0% |
| !! | CTTTTATTAATAGGTTGCTT+TGG | + | chr5_1:56188804-56188823 | Msa0738420:intron | 25.0% |
| ! | GTTTCAAACAATTTATCACT+TGG | + | chr5_1:56189126-56189145 | Msa0738420:CDS | 25.0% |
| ! | ATCACACATTGATCTATTAA+AGG | - | chr5_1:56189378-56189397 | None:intergenic | 25.0% |
| ! | CTGGATTTAAGTATAGTATA+TGG | - | chr5_1:56189501-56189520 | None:intergenic | 25.0% |
| ! | CATATACTATACTTAAATCC+AGG | + | chr5_1:56189499-56189518 | Msa0738420:intron | 25.0% |
| !!! | TTTTTTGTGAGAAATGATAC+TGG | + | chr5_1:56189604-56189623 | Msa0738420:intron | 25.0% |
| ! | TATCCATATACTTTGCTTAA+AGG | + | chr5_1:56189716-56189735 | Msa0738420:intron | 25.0% |
| ! | ATCCATATACTTTGCTTAAA+GGG | + | chr5_1:56189717-56189736 | Msa0738420:intron | 25.0% |
| !! | TCTTTTTGTATTTCTTCACT+TGG | + | chr5_1:56189770-56189789 | Msa0738420:intron | 25.0% |
| ! | CATGAAAAGTAAAACTTTGA+TGG | + | chr5_1:56190130-56190149 | Msa0738420:intron | 25.0% |
| ! | AAGGAAGAAAATTATCAACA+CGG | - | chr5_1:56190520-56190539 | None:intergenic | 25.0% |
| ! | CTTTATAGAAGAAATGTCTT+GGG | + | chr5_1:56190537-56190556 | Msa0738420:intron | 25.0% |
| ! | ATTTCTCTTATAAATAGGAC+CGG | - | chr5_1:56190636-56190655 | None:intergenic | 25.0% |
| ! | CACAACTTTCTCTTATAAAT+AGG | + | chr5_1:56190720-56190739 | Msa0738420:intron | 25.0% |
| ! | TTATACTGATACAACACTAA+TGG | - | chr5_1:56190837-56190856 | None:intergenic | 25.0% |
| ! | CTTCAGATTATCAACTATAA+AGG | - | chr5_1:56190952-56190971 | None:intergenic | 25.0% |
| ! | AAATGTATATCAGATGTTGT+AGG | + | chr5_1:56191113-56191132 | Msa0738420:CDS | 25.0% |
| !!! | CTTGCAGGTAATTTTAATTT+TGG | + | chr5_1:56191187-56191206 | Msa0738420:intron | 25.0% |
| !!! | TGCAGGTAATTTTAATTTTG+GGG | + | chr5_1:56191189-56191208 | Msa0738420:intron | 25.0% |
| ! | TATATTTATCTAGCATCACA+AGG | + | chr5_1:56191400-56191419 | Msa0738420:CDS | 25.0% |
| !! | GAATAAATGCAATTTTGCTT+AGG | + | chr5_1:56191483-56191502 | Msa0738420:three_prime_UTR | 25.0% |
| !! | TTCATATTTTCTTTGGTATG+AGG | + | chr5_1:56191592-56191611 | Msa0738420:three_prime_UTR | 25.0% |
| AAACAAATGCAATCTCAGAA+AGG | - | chr5_1:56187873-56187892 | None:intergenic | 30.0% | |
| TATGAAGCAATGTTGTTGAA+TGG | + | chr5_1:56187978-56187997 | Msa0738420:intron | 30.0% | |
| GGAACTGTACATATTTCTTA+AGG | + | chr5_1:56188120-56188139 | Msa0738420:intron | 30.0% | |
| ! | TCTGTAGATTAATGCGATTT+TGG | + | chr5_1:56188166-56188185 | Msa0738420:intron | 30.0% |
| !! | TGGAGTTCAAAATGCTATTT+TGG | + | chr5_1:56188203-56188222 | Msa0738420:intron | 30.0% |
| TACATCGTCAATGTTAAGTT+TGG | + | chr5_1:56188372-56188391 | Msa0738420:intron | 30.0% | |
| ACATCGTCAATGTTAAGTTT+GGG | + | chr5_1:56188373-56188392 | Msa0738420:intron | 30.0% | |
| !!! | TGGCAGATTACTACTTTTTT+TGG | + | chr5_1:56188403-56188422 | Msa0738420:intron | 30.0% |
| GACGAGTTTAGAAAAATCAT+GGG | - | chr5_1:56188450-56188469 | None:intergenic | 30.0% | |
| TGACGAGTTTAGAAAAATCA+TGG | - | chr5_1:56188451-56188470 | None:intergenic | 30.0% | |
| CATTGTTGATATCTAGAAGA+AGG | + | chr5_1:56188598-56188617 | Msa0738420:intron | 30.0% | |
| !!! | CAGCCTTACTTTTTTAATGT+TGG | + | chr5_1:56188681-56188700 | Msa0738420:intron | 30.0% |
| CTTCTCGAGAATAAAATTCA+TGG | - | chr5_1:56189038-56189057 | None:intergenic | 30.0% | |
| TGTCAACAGTCAAATGTATT+GGG | - | chr5_1:56189068-56189087 | None:intergenic | 30.0% | |
| ! | GTTTGAAACATATGCTTTCA+CGG | - | chr5_1:56189115-56189134 | None:intergenic | 30.0% |
| ACAGTTTCAAGAAATTCCTT+TGG | + | chr5_1:56189167-56189186 | Msa0738420:CDS | 30.0% | |
| TCAATGTGTGATATTGTACT+AGG | + | chr5_1:56189386-56189405 | Msa0738420:intron | 30.0% | |
| CCTAATACTTCAATTCAATC+AGG | - | chr5_1:56189434-56189453 | None:intergenic | 30.0% | |
| ! | CCTGATTGAATTGAAGTATT+AGG | + | chr5_1:56189431-56189450 | Msa0738420:intron | 30.0% |
| ! | TAGCTAGTGTCATTGTTATT+AGG | + | chr5_1:56189652-56189671 | Msa0738420:intron | 30.0% |
| ! | TTTTGTATTTCTTCACTTGG+TGG | + | chr5_1:56189773-56189792 | Msa0738420:intron | 30.0% |
| AAGACAAAAACAATGACACT+TGG | - | chr5_1:56189909-56189928 | None:intergenic | 30.0% | |
| ! | ATTTTCCTTTCCTTGTGAAA+TGG | + | chr5_1:56190006-56190025 | Msa0738420:intron | 30.0% |
| ! | TTTTCCTTTCCTTGTGAAAT+GGG | + | chr5_1:56190007-56190026 | Msa0738420:intron | 30.0% |
| ATGAATCTGAGTAACATGTT+TGG | + | chr5_1:56190164-56190183 | Msa0738420:intron | 30.0% | |
| TGAATCTGAGTAACATGTTT+GGG | + | chr5_1:56190165-56190184 | Msa0738420:intron | 30.0% | |
| ATGATTCGTTTATTTGCCTT+TGG | + | chr5_1:56190217-56190236 | Msa0738420:intron | 30.0% | |
| CATATCGTGATAAAAATGTG+GGG | - | chr5_1:56190248-56190267 | None:intergenic | 30.0% | |
| GCATATCGTGATAAAAATGT+GGG | - | chr5_1:56190249-56190268 | None:intergenic | 30.0% | |
| TGCATATCGTGATAAAAATG+TGG | - | chr5_1:56190250-56190269 | None:intergenic | 30.0% | |
| TTATCACGATATGCAATGTT+TGG | + | chr5_1:56190255-56190274 | Msa0738420:intron | 30.0% | |
| ATGCAATGTTTGGTACAATT+TGG | + | chr5_1:56190265-56190284 | Msa0738420:intron | 30.0% | |
| ! | GTATAAGTCCCACATATTTT+AGG | + | chr5_1:56190301-56190320 | Msa0738420:intron | 30.0% |
| !!! | TTACTTTTAAAACCATCTGG+AGG | - | chr5_1:56190374-56190393 | None:intergenic | 30.0% |
| !!! | GTCTTACTTTTAAAACCATC+TGG | - | chr5_1:56190377-56190396 | None:intergenic | 30.0% |
| CCAAGACATTTCTTCTATAA+AGG | - | chr5_1:56190539-56190558 | None:intergenic | 30.0% | |
| CCTTTATAGAAGAAATGTCT+TGG | + | chr5_1:56190536-56190555 | Msa0738420:intron | 30.0% | |
| ATGTATCTATTAGTTGAGAG+TGG | + | chr5_1:56190571-56190590 | Msa0738420:intron | 30.0% | |
| CTTTCTCTTATAAATAGGAC+CGG | + | chr5_1:56190725-56190744 | Msa0738420:intron | 30.0% | |
| AAAATCCCATCTGATTTAGA+AGG | + | chr5_1:56190987-56191006 | Msa0738420:CDS | 30.0% | |
| AAATCCCATCTGATTTAGAA+GGG | + | chr5_1:56190988-56191007 | Msa0738420:CDS | 30.0% | |
| AACATCATTGACGTATTTGT+AGG | - | chr5_1:56191057-56191076 | None:intergenic | 30.0% | |
| !! | ATTTCCCAATTTTGTTGTCT+GGG | - | chr5_1:56191097-56191116 | None:intergenic | 30.0% |
| !!! | ATTTTGGGGTTATATTGTAG+TGG | + | chr5_1:56191203-56191222 | Msa0738420:intron | 30.0% |
| ! | TTTGAGAACACATTTTCTCA+GGG | + | chr5_1:56191326-56191345 | Msa0738420:intron | 30.0% |
| TTGAAATAAAACGGAGAATG+AGG | + | chr5_1:56191665-56191684 | Msa0738420:three_prime_UTR | 30.0% | |
| AAACCCTAGCATTCTTTCTT+TGG | + | chr5_1:56187551-56187570 | Msa0738420:five_prime_UTR | 35.0% | |
| GTATGAATTACGGATATCGA+CGG | - | chr5_1:56187796-56187815 | None:intergenic | 35.0% | |
| GAGAGTAAAAACCTGATCAA+CGG | - | chr5_1:56187838-56187857 | None:intergenic | 35.0% | |
| GTTAGATTAACCACAGATTG+TGG | - | chr5_1:56188093-56188112 | None:intergenic | 35.0% | |
| TCTGTGGTTAATCTAACAGA+TGG | + | chr5_1:56188096-56188115 | Msa0738420:intron | 35.0% | |
| ATTTGAATTAGCAGCGAGTA+TGG | - | chr5_1:56188281-56188300 | None:intergenic | 35.0% | |
| !! | TGAAAATTTGGTGTTGGATG+TGG | + | chr5_1:56188338-56188357 | Msa0738420:intron | 35.0% |
| CATCGTCAATGTTAAGTTTG+GGG | + | chr5_1:56188374-56188393 | Msa0738420:intron | 35.0% | |
| ATCGTCAATGTTAAGTTTGG+GGG | + | chr5_1:56188375-56188394 | Msa0738420:intron | 35.0% | |
| TGTTAAGTTTGGGGGAATTA+TGG | + | chr5_1:56188383-56188402 | Msa0738420:intron | 35.0% | |
| !! | CATATATTTGGTGTAGCATG+TGG | + | chr5_1:56188562-56188581 | Msa0738420:intron | 35.0% |
| GGGATAGTAACATATTATGG+TGG | - | chr5_1:56188840-56188859 | None:intergenic | 35.0% | |
| GGTGGGATAGTAACATATTA+TGG | - | chr5_1:56188843-56188862 | None:intergenic | 35.0% | |
| CAAAACAAGCTTCAAAGAAC+TGG | - | chr5_1:56188906-56188925 | None:intergenic | 35.0% | |
| ! | AATGAGTTTTTACTTCGTGC+AGG | + | chr5_1:56188971-56188990 | Msa0738420:intron | 35.0% |
| AACAGTCAAATGTATTGGGT+TGG | - | chr5_1:56189064-56189083 | None:intergenic | 35.0% | |
| GTGTCAACAGTCAAATGTAT+TGG | - | chr5_1:56189069-56189088 | None:intergenic | 35.0% | |
| ATACATTTGACTGTTGACAC+AGG | + | chr5_1:56189069-56189088 | Msa0738420:CDS | 35.0% | |
| AATTCCTTTGGATCTTCGTA+TGG | + | chr5_1:56189179-56189198 | Msa0738420:CDS | 35.0% | |
| ! | CATTGGATGTACGTATTGAT+TGG | + | chr5_1:56189215-56189234 | Msa0738420:intron | 35.0% |
| TGCTTGCTTTCATCAATACA+TGG | + | chr5_1:56189320-56189339 | Msa0738420:intron | 35.0% | |
| GTGTGATATTGTACTAGGTT+AGG | + | chr5_1:56189391-56189410 | Msa0738420:intron | 35.0% | |
| GTTATTAGGACATAGTGACT+TGG | + | chr5_1:56189666-56189685 | Msa0738420:intron | 35.0% | |
| GACCCTTTAAGCAAAGTATA+TGG | - | chr5_1:56189722-56189741 | None:intergenic | 35.0% | |
| TGCTTAAAGGGTCTAAATCT+AGG | + | chr5_1:56189729-56189748 | Msa0738420:intron | 35.0% | |
| !!! | CTTCACTTGGTGGTTTTTTA+TGG | + | chr5_1:56189783-56189802 | Msa0738420:intron | 35.0% |
| TACAGAAAGAATGATACCTG+AGG | + | chr5_1:56189863-56189882 | Msa0738420:intron | 35.0% | |
| !!! | TCAGTTTTTGGTCATGATCA+AGG | - | chr5_1:56189949-56189968 | None:intergenic | 35.0% |
| ATCTGTGTCTCGTTTGTATT+TGG | + | chr5_1:56189968-56189987 | Msa0738420:intron | 35.0% | |
| TCTGTGTCTCGTTTGTATTT+GGG | + | chr5_1:56189969-56189988 | Msa0738420:intron | 35.0% | |
| TCGTTTGTATTTGGGAAAAC+TGG | + | chr5_1:56189977-56189996 | Msa0738420:intron | 35.0% | |
| CACAAAGTGTATTTGCAATC+AGG | + | chr5_1:56190070-56190089 | Msa0738420:intron | 35.0% | |
| TTCGTTTATTTGCCTTTGGA+AGG | + | chr5_1:56190221-56190240 | Msa0738420:intron | 35.0% | |
| !! | TTTGGTACAATTTGGTGCAT+TGG | + | chr5_1:56190273-56190292 | Msa0738420:intron | 35.0% |
| !! | TTGGTACAATTTGGTGCATT+GGG | + | chr5_1:56190274-56190293 | Msa0738420:intron | 35.0% |
| !! | TCTCTTTTAAAGGGGTTTTG+AGG | + | chr5_1:56190403-56190422 | Msa0738420:intron | 35.0% |
| !! | CTCTTTTAAAGGGGTTTTGA+GGG | + | chr5_1:56190404-56190423 | Msa0738420:intron | 35.0% |
| ATGCATATAAATACTCCCTC+CGG | + | chr5_1:56190614-56190633 | Msa0738420:intron | 35.0% | |
| TATAGATATGATACTCCCTC+CGG | - | chr5_1:56190747-56190766 | None:intergenic | 35.0% | |
| ATTGACTGTGTGTTAACTTC+TGG | + | chr5_1:56190926-56190945 | Msa0738420:intron | 35.0% | |
| AGCATCAATGACACATCTAT+TGG | + | chr5_1:56191016-56191035 | Msa0738420:CDS | 35.0% | |
| CAAATACGTCAATGATGTTG+TGG | + | chr5_1:56191058-56191077 | Msa0738420:CDS | 35.0% | |
| TTGACCCAGACAACAAAATT+GGG | + | chr5_1:56191090-56191109 | Msa0738420:CDS | 35.0% | |
| !! | CATTTCCCAATTTTGTTGTC+TGG | - | chr5_1:56191098-56191117 | None:intergenic | 35.0% |
| AACATAGCAAGCTGTTCTTA+CGG | - | chr5_1:56191301-56191320 | None:intergenic | 35.0% | |
| ! | GTTTGAGAACACATTTTCTC+AGG | + | chr5_1:56191325-56191344 | Msa0738420:intron | 35.0% |
| ! | AACACATTTTCTCAGGGTTT+TGG | + | chr5_1:56191332-56191351 | Msa0738420:intron | 35.0% |
| ! | ACACATTTTCTCAGGGTTTT+GGG | + | chr5_1:56191333-56191352 | Msa0738420:intron | 35.0% |
| !!! | AAGAGTGTTTCATGGTTTTC+AGG | + | chr5_1:56191362-56191381 | Msa0738420:intron | 35.0% |
| !! | TTTTCAGGATCATTTGCTCA+TGG | + | chr5_1:56191377-56191396 | Msa0738420:intron | 35.0% |
| !! | CAATGCACTTTTTATTGCGT+AGG | + | chr5_1:56191565-56191584 | Msa0738420:three_prime_UTR | 35.0% |
| GTGCCAAAGAAAGAATGCTA+GGG | - | chr5_1:56187557-56187576 | None:intergenic | 40.0% | |
| TCTTCTTCCCAAACCTTATC+CGG | + | chr5_1:56187660-56187679 | Msa0738420:CDS | 40.0% | |
| CAGATGTTGAAGATAACGAG+AGG | - | chr5_1:56187696-56187715 | None:intergenic | 40.0% | |
| ATCTCAGAAAGGAATGCATG+TGG | - | chr5_1:56187862-56187881 | None:intergenic | 40.0% | |
| GAAGCAATGTTGTTGAATGG+CGG | + | chr5_1:56187981-56188000 | Msa0738420:intron | 40.0% | |
| AAATTCCGCTAGCTATGTCA+CGG | - | chr5_1:56188053-56188072 | None:intergenic | 40.0% | |
| !!! | CTGCTATTTTCCACAATCTG+TGG | + | chr5_1:56188080-56188099 | Msa0738420:intron | 40.0% |
| GTGGTTAATCTAACAGATGG+CGG | + | chr5_1:56188099-56188118 | Msa0738420:intron | 40.0% | |
| ! | TTTTGGCAAAAGCCACACTA+TGG | + | chr5_1:56188183-56188202 | Msa0738420:intron | 40.0% |
| ! | GCATTTTGAACTCCATAGTG+TGG | - | chr5_1:56188198-56188217 | None:intergenic | 40.0% |
| !!! | CTTGGGATTCACTTTTTGGT+GGG | - | chr5_1:56188860-56188879 | None:intergenic | 40.0% |
| !! | CTTCCTTGGGATTCACTTTT+TGG | - | chr5_1:56188864-56188883 | None:intergenic | 40.0% |
| AATCCCAAGGAAGCTATAGT+TGG | + | chr5_1:56188871-56188890 | Msa0738420:CDS | 40.0% | |
| CATCCAACTATAGCTTCCTT+GGG | - | chr5_1:56188877-56188896 | None:intergenic | 40.0% | |
| TCAACCATACGAAGATCCAA+AGG | - | chr5_1:56189186-56189205 | None:intergenic | 40.0% | |
| TGTGAGAAATGATACTGGAC+TGG | + | chr5_1:56189609-56189628 | Msa0738420:intron | 40.0% | |
| ATTGTGAATGACATTGCCTC+AGG | - | chr5_1:56189882-56189901 | None:intergenic | 40.0% | |
| ! | ACGAGACACAGATCAGTTTT+TGG | - | chr5_1:56189961-56189980 | None:intergenic | 40.0% |
| AAGTCCCATTTCACAAGGAA+AGG | - | chr5_1:56190014-56190033 | None:intergenic | 40.0% | |
| TTTCCTTGTGAAATGGGACT+TGG | + | chr5_1:56190013-56190032 | Msa0738420:intron | 40.0% | |
| !! | CAGCTGCAGGTTGAATATTT+TGG | + | chr5_1:56190044-56190063 | Msa0738420:intron | 40.0% |
| ! | AACATGTTTGGGTTTGTCTC+AGG | + | chr5_1:56190176-56190195 | Msa0738420:intron | 40.0% |
| !!! | GGTTTTAAAAGTAAGACGCG+CGG | + | chr5_1:56190380-56190399 | Msa0738420:intron | 40.0% |
| !!! | TTAAAGGGGTTTTGAGGGAT+TGG | + | chr5_1:56190409-56190428 | Msa0738420:intron | 40.0% |
| GAAGAGAATACAGAGAGGAA+AGG | - | chr5_1:56190498-56190517 | None:intergenic | 40.0% | |
| AAGAAATGTCTTGGGTCTAC+TGG | + | chr5_1:56190545-56190564 | Msa0738420:intron | 40.0% | |
| AGAAATGTCTTGGGTCTACT+GGG | + | chr5_1:56190546-56190565 | Msa0738420:intron | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | - | chr5_1:56190729-56190748 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | - | chr5_1:56190728-56190747 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | + | chr5_1:56190728-56190747 | Msa0738420:intron | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | + | chr5_1:56190729-56190748 | Msa0738420:intron | 40.0% | |
| CCATCCCTTCTAAATCAGAT+GGG | - | chr5_1:56190995-56191014 | None:intergenic | 40.0% | |
| TCCATCCCTTCTAAATCAGA+TGG | - | chr5_1:56190996-56191015 | None:intergenic | 40.0% | |
| ! | AATGACACATCTATTGGCCT+TGG | + | chr5_1:56191022-56191041 | Msa0738420:CDS | 40.0% |
| ! | TTTGTAGGTGTCATCAACCA+AGG | - | chr5_1:56191042-56191061 | None:intergenic | 40.0% |
| TACGTCAATGATGTTGTGGA+AGG | + | chr5_1:56191062-56191081 | Msa0738420:CDS | 40.0% | |
| ACGTCAATGATGTTGTGGAA+GGG | + | chr5_1:56191063-56191082 | Msa0738420:CDS | 40.0% | |
| GTTGACCCAGACAACAAAAT+TGG | + | chr5_1:56191089-56191108 | Msa0738420:CDS | 40.0% | |
| AACCATGAAACACTCTTGTC+AGG | - | chr5_1:56191359-56191378 | None:intergenic | 40.0% | |
| TGTACCACAAGAGGTCTAAT+AGG | + | chr5_1:56191698-56191717 | Msa0738420:three_prime_UTR | 40.0% | |
| GGTGCCAAAGAAAGAATGCT+AGG | - | chr5_1:56187558-56187577 | None:intergenic | 45.0% | |
| CTTCTTCCCAAACCTTATCC+GGG | + | chr5_1:56187661-56187680 | Msa0738420:CDS | 45.0% | |
| AACCTTCCCGGATAAGGTTT+GGG | - | chr5_1:56187670-56187689 | None:intergenic | 45.0% | |
| GCGGAACAGCGTATGAATTA+CGG | - | chr5_1:56187806-56187825 | None:intergenic | 45.0% | |
| ! | TGATCAACGGACTCATTGTG+CGG | - | chr5_1:56187825-56187844 | None:intergenic | 45.0% |
| TTGTTCCGTGACATAGCTAG+CGG | + | chr5_1:56188045-56188064 | Msa0738420:intron | 45.0% | |
| ! | TTTTGGCAAAAGCCACACTC+TGG | + | chr5_1:56188220-56188239 | Msa0738420:intron | 45.0% |
| TTTGTTGAAGCTCCAGAGTG+TGG | - | chr5_1:56188235-56188254 | None:intergenic | 45.0% | |
| CTGGAGCTTCAACAAACTTG+CGG | + | chr5_1:56188239-56188258 | Msa0738420:intron | 45.0% | |
| !!! | CCTTGGGATTCACTTTTTGG+TGG | - | chr5_1:56188861-56188880 | None:intergenic | 45.0% |
| CCACCAAAAAGTGAATCCCA+AGG | + | chr5_1:56188858-56188877 | Msa0738420:CDS | 45.0% | |
| CCATCCAACTATAGCTTCCT+TGG | - | chr5_1:56188878-56188897 | None:intergenic | 45.0% | |
| CCAAGGAAGCTATAGTTGGA+TGG | + | chr5_1:56188875-56188894 | Msa0738420:CDS | 45.0% | |
| ACTTCGTGCAGGTATTCAAC+TGG | + | chr5_1:56188982-56189001 | Msa0738420:intron | 45.0% | |
| ! | TGCAGGTATTCAACTGGTCT+TGG | + | chr5_1:56188988-56189007 | Msa0738420:intron | 45.0% |
| !! | TCAACTGGTCTTGGAGTAAC+CGG | + | chr5_1:56188997-56189016 | Msa0738420:CDS | 45.0% |
| ! | ATGGATTAATGCACTGCCAC+CGG | - | chr5_1:56189019-56189038 | None:intergenic | 45.0% |
| GTTGACACAGGATTTGCAGA+TGG | + | chr5_1:56189081-56189100 | Msa0738420:CDS | 45.0% | |
| ACAGGATTTGCAGATGGAGA+GGG | + | chr5_1:56189087-56189106 | Msa0738420:CDS | 45.0% | |
| TGATGTTGCAAAAGAGAGCC+TGG | - | chr5_1:56189520-56189539 | None:intergenic | 45.0% | |
| ! | GAGAAATGATACTGGACTGG+AGG | + | chr5_1:56189612-56189631 | Msa0738420:intron | 45.0% |
| GATCCAAGTCCCATTTCACA+AGG | - | chr5_1:56190019-56190038 | None:intergenic | 45.0% | |
| AATATTCAACCTGCAGCTGC+AGG | - | chr5_1:56190043-56190062 | None:intergenic | 45.0% | |
| AAAATGTGGGGACCTTCCAA+AGG | - | chr5_1:56190236-56190255 | None:intergenic | 45.0% | |
| !! | GTACAATTTGGTGCATTGGG+TGG | + | chr5_1:56190277-56190296 | Msa0738420:intron | 45.0% |
| ACACGGAAGAGAATACAGAG+AGG | - | chr5_1:56190503-56190522 | None:intergenic | 45.0% | |
| GAAATGTCTTGGGTCTACTG+GGG | + | chr5_1:56190547-56190566 | Msa0738420:intron | 45.0% | |
| CCCATCTGATTTAGAAGGGA+TGG | + | chr5_1:56190992-56191011 | Msa0738420:CDS | 45.0% | |
| AGCTTATCAAATGCCGAGGA+GGG | - | chr5_1:56191155-56191174 | None:intergenic | 45.0% | |
| AAGCTTATCAAATGCCGAGG+AGG | - | chr5_1:56191156-56191175 | None:intergenic | 45.0% | |
| CACAAGCTTATCAAATGCCG+AGG | - | chr5_1:56191159-56191178 | None:intergenic | 45.0% | |
| !! | CGGTGTTCAATTTTTCAGCC+AGG | - | chr5_1:56191437-56191456 | None:intergenic | 45.0% |
| CAATCACAGAATCTGAGCAG+CGG | - | chr5_1:56191457-56191476 | None:intergenic | 45.0% | |
| TGAGGTCTCTTTGTAGTGAG+TGG | + | chr5_1:56191610-56191629 | Msa0738420:three_prime_UTR | 45.0% | |
| AAACGGAGAATGAGGTTCCA+AGG | + | chr5_1:56191673-56191692 | Msa0738420:three_prime_UTR | 45.0% | |
| TCCAAGGTTTGTACCACAAG+AGG | + | chr5_1:56191689-56191708 | Msa0738420:three_prime_UTR | 45.0% | |
| ACCTCTTGTGGTACAAACCT+TGG | - | chr5_1:56191693-56191712 | None:intergenic | 45.0% | |
| AGCACCTATTAGACCTCTTG+TGG | - | chr5_1:56191705-56191724 | None:intergenic | 45.0% | |
| !!! | ACTTTTAAATAAAAAAAATT+TGG | + | chr5_1:56188518-56188537 | Msa0738420:intron | 5.0% |
| !! | TAATAAATTTAATAAATTGT+AGG | + | chr5_1:56191233-56191252 | Msa0738420:intron | 5.0% |
| !! | AATAAATTTAATAAATTGTA+GGG | + | chr5_1:56191234-56191253 | Msa0738420:intron | 5.0% |
| GAGGAAGACAGCACGAGAAT+CGG | - | chr5_1:56187582-56187601 | None:intergenic | 50.0% | |
| ! | TGCTTCGATTCAGAGGTGTG+AGG | - | chr5_1:56187601-56187620 | None:intergenic | 50.0% |
| ! | TGATCGGTGCTTCGATTCAG+AGG | - | chr5_1:56187608-56187627 | None:intergenic | 50.0% |
| !! | CTGAATCGAAGCACCGATCA+TGG | + | chr5_1:56187608-56187627 | Msa0738420:exon | 50.0% |
| !! | AATCGAAGCACCGATCATGG+CGG | + | chr5_1:56187611-56187630 | Msa0738420:exon | 50.0% |
| TTCCCAAACCTTATCCGGGA+AGG | + | chr5_1:56187665-56187684 | Msa0738420:CDS | 50.0% | |
| GAACCTTCCCGGATAAGGTT+TGG | - | chr5_1:56187671-56187690 | None:intergenic | 50.0% | |
| AGGATGAACCTTCCCGGATA+AGG | - | chr5_1:56187676-56187695 | None:intergenic | 50.0% | |
| AACGAGAGGATGAACCTTCC+CGG | - | chr5_1:56187682-56187701 | None:intergenic | 50.0% | |
| GCACAATGAGTCCGTTGATC+AGG | + | chr5_1:56187824-56187843 | Msa0738420:CDS | 50.0% | |
| CACAGGATTTGCAGATGGAG+AGG | + | chr5_1:56189086-56189105 | Msa0738420:CDS | 50.0% | |
| ATGGTTGAAGCTGAGCGCAT+TGG | + | chr5_1:56189198-56189217 | Msa0738420:CDS | 50.0% | |
| TTAGGTGTTTGGCCTCCAGA+TGG | + | chr5_1:56190359-56190378 | Msa0738420:intron | 50.0% | |
| ! | AGACGCGCGGTCTCTTTTAA+AGG | + | chr5_1:56190393-56190412 | Msa0738420:intron | 50.0% |
| ! | GACGCGCGGTCTCTTTTAAA+GGG | + | chr5_1:56190394-56190413 | Msa0738420:intron | 50.0% |
| !! | ACGCGCGGTCTCTTTTAAAG+GGG | + | chr5_1:56190395-56190414 | Msa0738420:intron | 50.0% |
| !!! | AATGCCGAGGAGGGCATTTT+GGG | - | chr5_1:56191146-56191165 | None:intergenic | 50.0% |
| !!! | AAATGCCGAGGAGGGCATTT+TGG | - | chr5_1:56191147-56191166 | None:intergenic | 50.0% |
| GCTTGTGAATGACAGCTTGC+AGG | + | chr5_1:56191172-56191191 | Msa0738420:CDS | 50.0% | |
| !! | GGCCTGACAAGAGTGTTTCA+TGG | + | chr5_1:56191354-56191373 | Msa0738420:intron | 50.0% |
| GAAGACAGCACGAGAATCGG+TGG | - | chr5_1:56187579-56187598 | None:intergenic | 55.0% | |
| ACGGATATCGACGGTTCCGT+CGG | - | chr5_1:56187787-56187806 | None:intergenic | 55.0% | |
| !! | ACTGGTCTTGGAGTAACCGG+TGG | + | chr5_1:56189000-56189019 | Msa0738420:CDS | 55.0% |
| ! | TGATACTGGACTGGAGGCAG+TGG | + | chr5_1:56189618-56189637 | Msa0738420:intron | 55.0% |
| !!! | CGAGGAGGGCATTTTGGGAA+GGG | - | chr5_1:56191141-56191160 | None:intergenic | 55.0% |
| CCTTCCCAAAATGCCCTCCT+CGG | + | chr5_1:56191139-56191158 | Msa0738420:CDS | 55.0% | |
| CGCTTACTCGCCGCCATGAT+CGG | - | chr5_1:56187624-56187643 | None:intergenic | 60.0% | |
| TGTCCGTCGTCCTGACCAAG+CGG | + | chr5_1:56187725-56187744 | Msa0738420:CDS | 60.0% | |
| CGCGTCATCGGAACACTCCT+CGG | + | chr5_1:56187750-56187769 | Msa0738420:CDS | 60.0% | |
| GGATATCGACGGTTCCGTCG+GGG | - | chr5_1:56187785-56187804 | None:intergenic | 60.0% | |
| CGGATATCGACGGTTCCGTC+GGG | - | chr5_1:56187786-56187805 | None:intergenic | 60.0% | |
| CTTGGATCACCTGCAGCTGC+AGG | + | chr5_1:56190031-56190050 | Msa0738420:intron | 60.0% | |
| !!! | CCGAGGAGGGCATTTTGGGA+AGG | - | chr5_1:56191142-56191161 | None:intergenic | 60.0% |
| CACAAGGACACAGCTCAGCC+TGG | + | chr5_1:56191416-56191435 | Msa0738420:CDS | 60.0% | |
| GCTCCGCTTGGTCAGGACGA+CGG | - | chr5_1:56187731-56187750 | None:intergenic | 65.0% | |
| ATGACGCGCTCCGCTTGGTC+AGG | - | chr5_1:56187738-56187757 | None:intergenic | 65.0% | |
| GACCAAGCGGAGCGCGTCAT+CGG | + | chr5_1:56187738-56187757 | Msa0738420:CDS | 65.0% | |
| TTCCGATGACGCGCTCCGCT+TGG | - | chr5_1:56187743-56187762 | None:intergenic | 65.0% | |
| GACGGTTCCGTCGGGGAGAA+CGG | - | chr5_1:56187778-56187797 | None:intergenic | 65.0% | |
| CTCGGCTCCGTTCTCCCCGA+CGG | + | chr5_1:56187768-56187787 | Msa0738420:CDS | 70.0% | |
| CGTCGGGGAGAACGGAGCCG+AGG | - | chr5_1:56187770-56187789 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 56187499 | 56191733 | 56187499 | ID=Msa0738420;Name=Msa0738420 |
| chr5_1 | mRNA | 56187499 | 56191733 | 56187499 | ID=Msa0738420-mRNA-1;Parent=Msa0738420;Name=Msa0738420-mRNA-1;_AED=0.05;_eAED=0.05;_QI=128|1|1|1|1|1|5|260|284 |
| chr5_1 | exon | 56187499 | 56187845 | 56187499 | ID=Msa0738420-mRNA-1:exon:15919;Parent=Msa0738420-mRNA-1 |
| chr5_1 | exon | 56188817 | 56188896 | 56188817 | ID=Msa0738420-mRNA-1:exon:15920;Parent=Msa0738420-mRNA-1 |
| chr5_1 | exon | 56188993 | 56189222 | 56188993 | ID=Msa0738420-mRNA-1:exon:15921;Parent=Msa0738420-mRNA-1 |
| chr5_1 | exon | 56190958 | 56191193 | 56190958 | ID=Msa0738420-mRNA-1:exon:15922;Parent=Msa0738420-mRNA-1 |
| chr5_1 | exon | 56191384 | 56191733 | 56191384 | ID=Msa0738420-mRNA-1:exon:15923;Parent=Msa0738420-mRNA-1 |
| chr5_1 | five_prime_UTR | 56187499 | 56187626 | 56187499 | ID=Msa0738420-mRNA-1:five_prime_utr;Parent=Msa0738420-mRNA-1 |
| chr5_1 | CDS | 56187627 | 56187845 | 56187627 | ID=Msa0738420-mRNA-1:cds;Parent=Msa0738420-mRNA-1 |
| chr5_1 | CDS | 56188817 | 56188896 | 56188817 | ID=Msa0738420-mRNA-1:cds;Parent=Msa0738420-mRNA-1 |
| chr5_1 | CDS | 56188993 | 56189222 | 56188993 | ID=Msa0738420-mRNA-1:cds;Parent=Msa0738420-mRNA-1 |
| chr5_1 | CDS | 56190958 | 56191193 | 56190958 | ID=Msa0738420-mRNA-1:cds;Parent=Msa0738420-mRNA-1 |
| chr5_1 | CDS | 56191384 | 56191473 | 56191384 | ID=Msa0738420-mRNA-1:cds;Parent=Msa0738420-mRNA-1 |
| chr5_1 | three_prime_UTR | 56191474 | 56191733 | 56191474 | ID=Msa0738420-mRNA-1:three_prime_utr;Parent=Msa0738420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
