Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363910 | XP_013450311.1 | 98.068 | 207 | 3 | 1 | 1 | 207 | 1 | 206 | 1.43e-146 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363910 | sp|O65731|RS5_CICAR | 93.333 | 195 | 13 | 0 | 13 | 207 | 3 | 197 | 2.98e-133 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363910 | I3SKT5 | 98.068 | 207 | 3 | 1 | 1 | 207 | 1 | 206 | 6.84e-147 | 416 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa1363910 | 0.813559 | 2.407702e-51 | -8.615850e-47 |
| Msa0003330 | Msa1363910 | 0.813406 | 2.600813e-51 | -8.615850e-47 |
| Msa0021290 | Msa1363910 | 0.807259 | 5.516122e-50 | -8.615850e-47 |
| Msa0027590 | Msa1363910 | 0.847812 | 9.123354e-60 | -8.615850e-47 |
| Msa0040220 | Msa1363910 | 0.829496 | 4.983270e-55 | -8.615850e-47 |
| Msa0075350 | Msa1363910 | 0.801997 | 6.913933e-49 | -8.615850e-47 |
| Msa0094210 | Msa1363910 | 0.987916 | 5.143954e-172 | -8.615850e-47 |
| Msa1351020 | Msa1363910 | 0.860359 | 2.182459e-63 | -8.615850e-47 |
| Msa1363910 | Msa1363930 | 0.847541 | 1.083111e-59 | -8.615850e-47 |
| Msa1363910 | Msa1387750 | 0.803313 | 3.699936e-49 | -8.615850e-47 |
| Msa1363910 | Msa1390760 | 0.866033 | 3.832264e-65 | -8.615850e-47 |
| Msa1363910 | Msa1413570 | 0.824975 | 6.032725e-54 | -8.615850e-47 |
| Msa1363910 | Msa1423050 | 0.800328 | 1.517343e-48 | -8.615850e-47 |
| Msa1363910 | Msa1424570 | 0.819437 | 1.162192e-52 | -8.615850e-47 |
| Msa1363910 | Msa1432310 | 0.845934 | 2.978294e-59 | -8.615850e-47 |
| Msa1363910 | Msa1449160 | 0.969221 | 8.333533e-130 | -8.615850e-47 |
| Msa1363910 | Msa1450560 | 0.839186 | 1.841769e-57 | -8.615850e-47 |
| Msa1363910 | Msa1465700 | 0.820137 | 8.040200e-53 | -8.615850e-47 |
| Msa0602900 | Msa1363910 | 0.826132 | 3.208228e-54 | -8.615850e-47 |
| Msa0605890 | Msa1363910 | 0.821938 | 3.093925e-53 | -8.615850e-47 |
| Msa0619230 | Msa1363910 | 0.868840 | 4.840406e-66 | -8.615850e-47 |
| Msa0621190 | Msa1363910 | 0.816128 | 6.486746e-52 | -8.615850e-47 |
| Msa0622230 | Msa1363910 | 0.807882 | 4.067181e-50 | -8.615850e-47 |
| Msa0643960 | Msa1363910 | 0.826841 | 2.173949e-54 | -8.615850e-47 |
| Msa0656450 | Msa1363910 | 0.819653 | 1.037176e-52 | -8.615850e-47 |
| Msa0704860 | Msa1363910 | 0.835622 | 1.507502e-56 | -8.615850e-47 |
| Msa0708630 | Msa1363910 | 0.836695 | 8.048212e-57 | -8.615850e-47 |
| Msa0738420 | Msa1363910 | 0.839446 | 1.577268e-57 | -8.615850e-47 |
| Msa0748350 | Msa1363910 | 0.818497 | 1.900564e-52 | -8.615850e-47 |
| Msa0759660 | Msa1363910 | 0.801865 | 7.360292e-49 | -8.615850e-47 |
| Msa0784830 | Msa1363910 | 0.805316 | 1.416057e-49 | -8.615850e-47 |
| Msa0788380 | Msa1363910 | 0.807297 | 5.415356e-50 | -8.615850e-47 |
| Msa0790450 | Msa1363910 | 0.832544 | 8.898682e-56 | -8.615850e-47 |
| Msa0834220 | Msa1363910 | 0.805984 | 1.024941e-49 | -8.615850e-47 |
| Msa0132460 | Msa1363910 | 0.835291 | 1.828084e-56 | -8.615850e-47 |
| Msa0134580 | Msa1363910 | 0.848921 | 4.504323e-60 | -8.615850e-47 |
| Msa0167860 | Msa1363910 | 0.803998 | 2.667022e-49 | -8.615850e-47 |
| Msa0168320 | Msa1363910 | 0.807904 | 4.024758e-50 | -8.615850e-47 |
| Msa0182050 | Msa1363910 | 0.839817 | 1.262635e-57 | -8.615850e-47 |
| Msa0182100 | Msa1363910 | 0.824517 | 7.731868e-54 | -8.615850e-47 |
| Msa0188740 | Msa1363910 | 0.824966 | 6.061704e-54 | -8.615850e-47 |
| Msa0191450 | Msa1363910 | 0.836014 | 1.199488e-56 | -8.615850e-47 |
| Msa0191550 | Msa1363910 | 0.832541 | 8.911488e-56 | -8.615850e-47 |
| Msa0192300 | Msa1363910 | 0.822895 | 1.854255e-53 | -8.615850e-47 |
| Msa0194940 | Msa1363910 | 0.806065 | 9.856942e-50 | -8.615850e-47 |
| Msa0195030 | Msa1363910 | 0.825482 | 4.576141e-54 | -8.615850e-47 |
| Msa0233550 | Msa1363910 | 0.825677 | 4.113737e-54 | -8.615850e-47 |
| Msa0237180 | Msa1363910 | 0.812317 | 4.505542e-51 | -8.615850e-47 |
| Msa1235950 | Msa1363910 | 0.801304 | 9.589939e-49 | -8.615850e-47 |
| Msa1235980 | Msa1363910 | 0.809230 | 2.096822e-50 | -8.615850e-47 |
| Msa1237040 | Msa1363910 | 0.825295 | 5.068222e-54 | -8.615850e-47 |
| Msa1245270 | Msa1363910 | 0.853194 | 2.807494e-61 | -8.615850e-47 |
| Msa1284800 | Msa1363910 | 0.830279 | 3.210963e-55 | -8.615850e-47 |
| Msa1317390 | Msa1363910 | 0.824415 | 8.171274e-54 | -8.615850e-47 |
| Msa0371490 | Msa1363910 | 0.856971 | 2.242171e-62 | -8.615850e-47 |
| Msa0382670 | Msa1363910 | 0.828391 | 9.225730e-55 | -8.615850e-47 |
| Msa0388520 | Msa1363910 | 0.863356 | 2.638461e-64 | -8.615850e-47 |
| Msa0426090 | Msa1363910 | 0.855348 | 6.703054e-62 | -8.615850e-47 |
| Msa0426250 | Msa1363910 | 0.830716 | 2.510285e-55 | -8.615850e-47 |
| Msa0472480 | Msa1363910 | 0.862103 | 6.420902e-64 | -8.615850e-47 |
| Msa0475810 | Msa1363910 | 0.815974 | 7.020048e-52 | -8.615850e-47 |
| Msa0481520 | Msa1363910 | 0.826320 | 2.894738e-54 | -8.615850e-47 |
| Msa1001620 | Msa1363910 | 0.800059 | 1.721498e-48 | -8.615850e-47 |
| Msa1025200 | Msa1363910 | 0.813566 | 2.398400e-51 | -8.615850e-47 |
| Msa1025220 | Msa1363910 | 0.815934 | 7.166775e-52 | -8.615850e-47 |
| Msa1041680 | Msa1363910 | 0.821168 | 4.659022e-53 | -8.615850e-47 |
| Msa0239420 | Msa1363910 | 0.818995 | 1.465330e-52 | -8.615850e-47 |
| Msa0243750 | Msa1363910 | 0.826970 | 2.025564e-54 | -8.615850e-47 |
| Msa0270160 | Msa1363910 | 0.810456 | 1.142663e-50 | -8.615850e-47 |
| Msa0274940 | Msa1363910 | 0.811637 | 6.337750e-51 | -8.615850e-47 |
| Msa0277600 | Msa1363910 | 0.826578 | 2.512361e-54 | -8.615850e-47 |
| Msa0281370 | Msa1363910 | 0.818908 | 1.533524e-52 | -8.615850e-47 |
| Msa0282290 | Msa1363910 | 0.824773 | 6.730610e-54 | -8.615850e-47 |
| Msa0301250 | Msa1363910 | 0.829252 | 5.712814e-55 | -8.615850e-47 |
| Msa0313060 | Msa1363910 | 0.825497 | 4.538578e-54 | -8.615850e-47 |
| Msa0315430 | Msa1363910 | 0.803413 | 3.528445e-49 | -8.615850e-47 |
| Msa0315660 | Msa1363910 | 0.820422 | 6.918744e-53 | -8.615850e-47 |
| Msa0340560 | Msa1363910 | 0.814773 | 1.299086e-51 | -8.615850e-47 |
| Msa1124980 | Msa1363910 | 0.803544 | 3.314607e-49 | -8.615850e-47 |
| Msa1144610 | Msa1363910 | 0.906915 | 8.903479e-81 | -8.615850e-47 |
| Msa1144630 | Msa1363910 | 0.846499 | 2.090772e-59 | -8.615850e-47 |
| Msa1164150 | Msa1363910 | 0.811273 | 7.603196e-51 | -8.615850e-47 |
| Msa1165640 | Msa1363910 | 0.807954 | 3.926659e-50 | -8.615850e-47 |
| Msa1166570 | Msa1363910 | 0.821748 | 3.423942e-53 | -8.615850e-47 |
| Msa1166670 | Msa1363910 | 0.893790 | 4.526623e-75 | -8.615850e-47 |
| Msa1167360 | Msa1363910 | 0.806972 | 6.344951e-50 | -8.615850e-47 |
| Msa1186030 | Msa1363910 | 0.805482 | 1.306877e-49 | -8.615850e-47 |
| Msa1206240 | Msa1363910 | 0.821070 | 4.908279e-53 | -8.615850e-47 |
| Msa0511760 | Msa1363910 | 0.809575 | 1.768121e-50 | -8.615850e-47 |
| Msa0547920 | Msa1363910 | 0.836204 | 1.073265e-56 | -8.615850e-47 |
| Msa0573550 | Msa1363910 | 0.864283 | 1.358842e-64 | -8.615850e-47 |
| Msa0578010 | Msa1363910 | 0.800809 | 1.210605e-48 | -8.615850e-47 |
| Msa0582070 | Msa1363910 | 0.972541 | 6.185774e-135 | -8.615850e-47 |
| Msa0597240 | Msa1363910 | 0.820447 | 6.827289e-53 | -8.615850e-47 |
| Msa0880050 | Msa1363910 | 0.800627 | 1.319058e-48 | -8.615850e-47 |
| Msa0929700 | Msa1363910 | 0.858486 | 7.970189e-63 | -8.615850e-47 |
| Msa0930360 | Msa1363910 | 0.829677 | 4.502051e-55 | -8.615850e-47 |
| Msa0930790 | Msa1363910 | 0.824573 | 7.503052e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363910 | MtrunA17_Chr7g0268431 | 98.068 | 207 | 3 | 1 | 1 | 207 | 1 | 206 | 1.32e-150 | 416 |
| Msa1363910 | MtrunA17_Chr1g0176261 | 94.737 | 209 | 7 | 3 | 1 | 207 | 33 | 239 | 7.11e-141 | 392 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363910 | AT2G37270.1 | 88.557 | 201 | 22 | 1 | 8 | 207 | 7 | 207 | 6.29e-132 | 369 |
| Msa1363910 | AT2G37270.2 | 88.557 | 201 | 22 | 1 | 8 | 207 | 7 | 207 | 6.29e-132 | 369 |
| Msa1363910 | AT3G11940.1 | 89.529 | 191 | 20 | 0 | 17 | 207 | 17 | 207 | 2.40e-130 | 365 |
| Msa1363910 | AT3G11940.2 | 89.529 | 191 | 20 | 0 | 17 | 207 | 17 | 207 | 2.40e-130 | 365 |
Find 72 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATATAAATACAAATCT+AGG | 0.236520 | tig0018101:+5395 | None:intergenic |
| CAGCTATGCGATCAAGAAAA+AGG | 0.316264 | tig0018101:+8997 | Msa1363910:intron |
| GCATCAACTATAACTTGAAT+TGG | 0.326315 | tig0018101:-6345 | None:intergenic |
| GAGCTTGACTTCGTTTAGAT+TGG | 0.348914 | tig0018101:-5629 | None:intergenic |
| TCCTCTTCGTCGTGTTAATC+AGG | 0.349057 | tig0018101:+8761 | Msa1363910:CDS |
| ACCAGTTGTTAGAAGATATA+TGG | 0.352278 | tig0018101:-8784 | None:intergenic |
| AGAGAAGATGCAACCAGAAT+TGG | 0.353281 | tig0018101:+8699 | Msa1363910:CDS |
| ATTACTCTAGCTTGGAAAAC+TGG | 0.358659 | tig0018101:-9310 | None:intergenic |
| GTGCCCGTGAAGCTGCATTT+AGG | 0.361118 | tig0018101:+8805 | Msa1363910:CDS |
| TTGGATCTGCTGGAGTTGTT+AGG | 0.369348 | tig0018101:+8718 | Msa1363910:CDS |
| AGGAACATATGTTGCATGTT+TGG | 0.372138 | tig0018101:-6151 | None:intergenic |
| GCCAATCGTTAAGCATCATT+TGG | 0.372423 | tig0018101:+9043 | Msa1363910:exon |
| GAGGAAAATAAACCAGTAAA+AGG | 0.394902 | tig0018101:-9152 | None:intergenic |
| ATGGAGCTTTGACGACGTTC+AGG | 0.402177 | tig0018101:+5660 | Msa1363910:CDS |
| GCCATATATCTTCTAACAAC+TGG | 0.404354 | tig0018101:+8783 | Msa1363910:CDS |
| CGCGGCCGTCAGCTTCTCAC+TGG | 0.409187 | tig0018101:-5458 | None:intergenic |
| GGTACTCAAAGAAGCGCTTC+AGG | 0.411900 | tig0018101:+6187 | Msa1363910:CDS |
| AGCTTGACTTCGTTTAGATT+GGG | 0.412691 | tig0018101:-5628 | None:intergenic |
| CTTAGTCCATGACTGTTTCA+AGG | 0.413064 | tig0018101:+9211 | Msa1363910:three_prime_UTR |
| GAAAGAAACTCATGGCTGTT+AGG | 0.417495 | tig0018101:+6274 | Msa1363910:CDS |
| CAGATTACCGATCTGTCTCT+TGG | 0.434208 | tig0018101:+6105 | Msa1363910:intron |
| AGATTACCGATCTGTCTCTT+GGG | 0.440013 | tig0018101:+6106 | Msa1363910:intron |
| GCAACCAGAATTGGATCTGC+TGG | 0.442717 | tig0018101:+8708 | Msa1363910:CDS |
| CTAGCTTGGAAAACTGGTAT+TGG | 0.447833 | tig0018101:-9304 | None:intergenic |
| GAAGGCAAAGCAAGAGTGAC+AGG | 0.449142 | tig0018101:-5424 | None:intergenic |
| TAGTTGATGCTGTCGTCAAC+AGG | 0.451278 | tig0018101:+6358 | Msa1363910:CDS |
| TGCTGGAGTTGTTAGGAGGC+AGG | 0.469034 | tig0018101:+8725 | Msa1363910:CDS |
| TGATGCTTAACGATTGGCCT+TGG | 0.471931 | tig0018101:-9038 | None:intergenic |
| AGATTGGGATCAACTTCGAC+TGG | 0.475242 | tig0018101:-5613 | None:intergenic |
| CTGCCAAGGGTTCATCCAAC+AGG | 0.475684 | tig0018101:+8874 | Msa1363910:CDS |
| ATTCTGGTTGCATCTTCTCT+AGG | 0.476377 | tig0018101:-8696 | None:intergenic |
| TCAATATAAATACAAATCTA+GGG | 0.483881 | tig0018101:+5396 | None:intergenic |
| TGTTCCTAAATGCAGCTTCA+CGG | 0.488373 | tig0018101:-8809 | None:intergenic |
| CTGTCTCTTGGGGATTACAT+TGG | 0.493111 | tig0018101:+6117 | Msa1363910:CDS |
| AACTCCAGCAGATCCAATTC+TGG | 0.495047 | tig0018101:-8712 | None:intergenic |
| TCCAAATGATGCTTAACGAT+TGG | 0.503018 | tig0018101:-9044 | None:intergenic |
| TAAGACAATTGCTGAATGCT+TGG | 0.507627 | tig0018101:+8833 | Msa1363910:CDS |
| GTTCCTAAATGCAGCTTCAC+GGG | 0.512374 | tig0018101:-8808 | None:intergenic |
| AGTTGTTAGGAGGCAGGCTG+TGG | 0.516790 | tig0018101:+8731 | Msa1363910:CDS |
| ACATATGTTCCTCACACTGC+TGG | 0.521105 | tig0018101:+6162 | Msa1363910:CDS |
| GGGGATTACATTGGAGCAAG+AGG | 0.537561 | tig0018101:+6126 | Msa1363910:CDS |
| TTAGTGAGCCTCTCAACAAT+GGG | 0.543323 | tig0018101:-6222 | None:intergenic |
| TGAGATTGAGAGAGTTGCCA+AGG | 0.553654 | tig0018101:+9021 | Msa1363910:CDS |
| GAACGTCGTCAAAGCTCCAT+TGG | 0.555775 | tig0018101:-5657 | None:intergenic |
| ATACCTGTTGGATGAACCCT+TGG | 0.559348 | tig0018101:-8877 | None:intergenic |
| GATCTGCTGGAGTTGTTAGG+AGG | 0.561323 | tig0018101:+8721 | Msa1363910:CDS |
| TGAACTCATTAACGCTGCCA+AGG | 0.562075 | tig0018101:+8860 | Msa1363910:CDS |
| GTTAGTGAGCCTCTCAACAA+TGG | 0.562680 | tig0018101:-6223 | None:intergenic |
| AAGTCAAGCTCTTCAACCAA+TGG | 0.580728 | tig0018101:+5641 | Msa1363910:CDS |
| CGATGGTTGAAATGATATGC+TGG | 0.590544 | tig0018101:+9391 | Msa1363910:three_prime_UTR |
| CTCAGTGTCCCATTGTTGAG+AGG | 0.591866 | tig0018101:+6214 | Msa1363910:CDS |
| AATGATCCTTGAAACAGTCA+TGG | 0.599615 | tig0018101:-9217 | None:intergenic |
| ACAAGTCAATTCAACGTGAG+AGG | 0.604212 | tig0018101:-9171 | None:intergenic |
| TTAAATAAAGATGTAATACA+AGG | 0.605416 | tig0018101:-9102 | None:intergenic |
| GATTGGGATCAACTTCGACT+GGG | 0.607523 | tig0018101:-5612 | None:intergenic |
| GCCGCGCCGCACTATCTACA+AGG | 0.608102 | tig0018101:+5475 | Msa1363910:five_prime_UTR |
| GATTACCGATCTGTCTCTTG+GGG | 0.611070 | tig0018101:+6107 | Msa1363910:intron |
| GTAATCCCCAAGAGACAGAT+CGG | 0.613626 | tig0018101:-6112 | None:intergenic |
| GAACTCATTAACGCTGCCAA+GGG | 0.615553 | tig0018101:+8861 | Msa1363910:CDS |
| ATGATGCACGGCAGAAACAA+CGG | 0.618587 | tig0018101:+6252 | Msa1363910:CDS |
| TAGGATCATTAAGCATGCCA+TGG | 0.620948 | tig0018101:+6293 | Msa1363910:CDS |
| AGCGACGGTTTCATCAGCCA+TGG | 0.634868 | tig0018101:-5587 | None:intergenic |
| TAGCAAGTGAATGATCTCCA+TGG | 0.641966 | tig0018101:-6310 | None:intergenic |
| AAACAACGGAAAGAAACTCA+TGG | 0.646751 | tig0018101:+6266 | Msa1363910:CDS |
| ATGTTCCTCACACTGCTGGT+AGG | 0.649707 | tig0018101:+6166 | Msa1363910:CDS |
| ACTAACTCTCTCATGATGCA+CGG | 0.651624 | tig0018101:+6240 | Msa1363910:CDS |
| GCCTGATTAACACGACGAAG+AGG | 0.651878 | tig0018101:-8762 | None:intergenic |
| AAGCTACCTTGTAGATAGTG+CGG | 0.671061 | tig0018101:-5481 | None:intergenic |
| AACTTCGACTGGGATAGCGA+CGG | 0.675722 | tig0018101:-5602 | None:intergenic |
| AAGGCAAAGCAAGAGTGACA+GGG | 0.684074 | tig0018101:-5423 | None:intergenic |
| GAGTACCTACCAGCAGTGTG+AGG | 0.691601 | tig0018101:-6171 | None:intergenic |
| ACCTTGTAGATAGTGCGGCG+CGG | 0.782232 | tig0018101:-5476 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTTGAATTATTATTAAT+TGG | + | tig0018101:7052-7071 | Msa1363910:intron | 10.0% |
| !!! | TTTCAATAAATATTTTATCT+TGG | + | tig0018101:7557-7576 | Msa1363910:intron | 10.0% |
| !!! | AATACTTTTTTGAATATTTA+AGG | + | tig0018101:8310-8329 | Msa1363910:intron | 10.0% |
| !!! | ATACTTTTTTGAATATTTAA+GGG | + | tig0018101:8311-8330 | Msa1363910:intron | 10.0% |
| !!! | AATTATATTATTTTATGTAG+TGG | + | tig0018101:8672-8691 | Msa1363910:intron | 10.0% |
| !!! | GCTATTTTCATAATTTATAT+TGG | + | tig0018101:5889-5908 | Msa1363910:intron | 15.0% |
| !!! | ATAAATCAACTTGAATTTTT+TGG | + | tig0018101:6691-6710 | Msa1363910:intron | 15.0% |
| !!! | GTTTTTAAATTGTTAAAACT+TGG | + | tig0018101:7087-7106 | Msa1363910:intron | 15.0% |
| !! | AATTTATCTGTTTACATATA+GGG | - | tig0018101:7741-7760 | None:intergenic | 15.0% |
| !! | TAATTTATCTGTTTACATAT+AGG | - | tig0018101:7742-7761 | None:intergenic | 15.0% |
| !!! | AAACTTTAAAGATTGAATAA+TGG | - | tig0018101:8907-8926 | None:intergenic | 15.0% |
| !!! | TGATGAGAAATATTTTATTT+TGG | + | tig0018101:9078-9097 | Msa1363910:three_prime_UTR | 15.0% |
| !! | TTAAATAAAGATGTAATACA+AGG | - | tig0018101:9105-9124 | None:intergenic | 15.0% |
| !! | GTCAATATATATCAATCATA+GGG | - | tig0018101:6414-6433 | None:intergenic | 20.0% |
| !! | AGTCAATATATATCAATCAT+AGG | - | tig0018101:6415-6434 | None:intergenic | 20.0% |
| !! | AATAATATGAAACAGATCAA+TGG | - | tig0018101:6492-6511 | None:intergenic | 20.0% |
| !!! | TTGAAATTGAATTTTTGATG+CGG | + | tig0018101:6511-6530 | Msa1363910:intron | 20.0% |
| !!! | ATGATTATTTGTTTTCCTAT+TGG | + | tig0018101:6571-6590 | Msa1363910:intron | 20.0% |
| !!! | ATTTTAATAAAACAAAGTCC+AGG | - | tig0018101:6917-6936 | None:intergenic | 20.0% |
| !! | TCACTTATACATAACAAATA+AGG | - | tig0018101:7219-7238 | None:intergenic | 20.0% |
| !! | GTATAAGTGATCAAATATAT+AGG | + | tig0018101:7229-7248 | Msa1363910:intron | 20.0% |
| !! | TTTATAGCATTATAACTACA+TGG | - | tig0018101:7277-7296 | None:intergenic | 20.0% |
| !!! | ATGCTATAAATATTTTGTGA+TGG | + | tig0018101:7287-7306 | Msa1363910:intron | 20.0% |
| !! | GATTACAATATGACAAAATA+AGG | - | tig0018101:7521-7540 | None:intergenic | 20.0% |
| !! | TGTCATATTGTAATCAAATT+TGG | + | tig0018101:7526-7545 | Msa1363910:intron | 20.0% |
| !! | GTCATATTGTAATCAAATTT+GGG | + | tig0018101:7527-7546 | Msa1363910:intron | 20.0% |
| !! | TCATATTGTAATCAAATTTG+GGG | + | tig0018101:7528-7547 | Msa1363910:intron | 20.0% |
| !! | GATTACAATATGACAAAATA+AGG | - | tig0018101:7521-7540 | None:intergenic | 20.0% |
| !! | ATGATTTATTATTTCCCTAT+TGG | + | tig0018101:7724-7743 | Msa1363910:intron | 20.0% |
| !! | TATTAACAATTAACTGTGTA+TGG | + | tig0018101:8507-8526 | Msa1363910:intron | 20.0% |
| !!! | AACATTGTTGTTTTTAAACA+TGG | + | tig0018101:9123-9142 | Msa1363910:three_prime_UTR | 20.0% |
| !!! | TTTTTACATTTCTGCTATTT+AGG | + | tig0018101:9267-9286 | Msa1363910:three_prime_UTR | 20.0% |
| ! | TAATTCAATGATTAGGGTTA+GGG | - | tig0018101:5558-5577 | None:intergenic | 25.0% |
| ! | ATAATTCAATGATTAGGGTT+AGG | - | tig0018101:5559-5578 | None:intergenic | 25.0% |
| ! | CGTGAATAATTCAATGATTA+GGG | - | tig0018101:5564-5583 | None:intergenic | 25.0% |
| ! | CAAATTATGACATGTTTGTT+GGG | - | tig0018101:5944-5963 | None:intergenic | 25.0% |
| ! | ACAAATTATGACATGTTTGT+TGG | - | tig0018101:5945-5964 | None:intergenic | 25.0% |
| !!! | TATTTTCAAGTAACTCATGT+CGG | + | tig0018101:5967-5986 | Msa1363910:intron | 25.0% |
| ! | TCAAATAAGCCAATCTAAAT+AGG | + | tig0018101:5999-6018 | Msa1363910:intron | 25.0% |
| ! | GAAAAAAGTGACAAATGATA+AGG | - | tig0018101:6649-6668 | None:intergenic | 25.0% |
| !!! | TTAAGAATTTTGACAATGCA+TGG | + | tig0018101:6730-6749 | Msa1363910:intron | 25.0% |
| ! | TTGTTTATTCTCACTTTGTT+TGG | + | tig0018101:7008-7027 | Msa1363910:intron | 25.0% |
| ! | GATGATTTATTGTTTCCTAT+TGG | + | tig0018101:7142-7161 | Msa1363910:intron | 25.0% |
| ! | TGATTAATACTTGATAGAGA+AGG | + | tig0018101:7332-7351 | Msa1363910:intron | 25.0% |
| !!! | ACTATTTTAGCTGTTAAGAT+TGG | + | tig0018101:7388-7407 | Msa1363910:intron | 25.0% |
| !!! | CTATTTTAGCTGTTAAGATT+GGG | + | tig0018101:7389-7408 | Msa1363910:intron | 25.0% |
| !!! | TATTTTAGCTGTTAAGATTG+GGG | + | tig0018101:7390-7409 | Msa1363910:intron | 25.0% |
| !!! | GATGATTTTTTGTTTCCTAT+TGG | + | tig0018101:7444-7463 | Msa1363910:intron | 25.0% |
| ! | AGTAATCAATTAATCATGCA+TGG | + | tig0018101:7581-7600 | Msa1363910:intron | 25.0% |
| !! | GTAATTTTTACTTGTACGAA+AGG | + | tig0018101:7626-7645 | Msa1363910:intron | 25.0% |
| ! | TAAATCATCATTTCATTCTC+CGG | - | tig0018101:7131-7150 | None:intergenic | 25.0% |
| !!! | AATTGTTTGTTTTTTTCCTC+CGG | + | tig0018101:8107-8126 | Msa1363910:intron | 25.0% |
| !!! | AAGTTTGAAATCTTTTCTTG+TGG | + | tig0018101:8146-8165 | Msa1363910:intron | 25.0% |
| ! | ATTGAAAGGAGAAAATGAAA+TGG | - | tig0018101:8462-8481 | None:intergenic | 25.0% |
| ! | CGAGAAACAAATTGTAAATA+AGG | + | tig0018101:8553-8572 | Msa1363910:intron | 25.0% |
| ! | TTAATTCAAAGCAAAAACTG+AGG | + | tig0018101:8593-8612 | Msa1363910:intron | 25.0% |
| ! | ACATATCCTAAAACTAAAAC+TGG | - | tig0018101:8638-8657 | None:intergenic | 25.0% |
| !! | CTTTAAAGATTGAATAATGG+TGG | - | tig0018101:8904-8923 | None:intergenic | 25.0% |
| ! | AGAAAACAAATTCAGTACAT+TGG | - | tig0018101:8930-8949 | None:intergenic | 25.0% |
| GCGTGAATAATTCAATGATT+AGG | - | tig0018101:5565-5584 | None:intergenic | 30.0% | |
| CATTAAGGACCTATTTAGAT+TGG | - | tig0018101:6011-6030 | None:intergenic | 30.0% | |
| CAATCTAAATAGGTCCTTAA+TGG | + | tig0018101:6009-6028 | Msa1363910:intron | 30.0% | |
| ACTTACTAACACAACCATTA+AGG | - | tig0018101:6026-6045 | None:intergenic | 30.0% | |
| GCATCAACTATAACTTGAAT+TGG | - | tig0018101:6348-6367 | None:intergenic | 30.0% | |
| GGGAAAATAACAAAATGCAA+AGG | - | tig0018101:6394-6413 | None:intergenic | 30.0% | |
| CTGCTTAATATGTCTTGATT+TGG | + | tig0018101:6537-6556 | Msa1363910:intron | 30.0% | |
| !! | ATATGTCTTGATTTGGAGAA+TGG | + | tig0018101:6544-6563 | Msa1363910:intron | 30.0% |
| ATTCAGGTATTCAAACCAAT+AGG | - | tig0018101:6589-6608 | None:intergenic | 30.0% | |
| TACAAAAAATGCCATCATTC+AGG | - | tig0018101:6605-6624 | None:intergenic | 30.0% | |
| TTGATTTACTGTTTCCCTAT+TGG | + | tig0018101:6840-6859 | Msa1363910:intron | 30.0% | |
| ACATGCATTATTACTGTTGA+GGG | - | tig0018101:6944-6963 | None:intergenic | 30.0% | |
| AATACTTGATAGAGAAGGAT+AGG | + | tig0018101:7337-7356 | Msa1363910:intron | 30.0% | |
| !!! | ATTTTAGCTGTTAAGATTGG+GGG | + | tig0018101:7391-7410 | Msa1363910:intron | 30.0% |
| !! | TTGTTTCCTATTGGTTTGAT+TGG | + | tig0018101:7151-7170 | Msa1363910:intron | 30.0% |
| ATTAAAGCAGTAAAGTGTGA+AGG | + | tig0018101:7775-7794 | Msa1363910:intron | 30.0% | |
| ACAGCCATAGTTATCAATAT+TGG | + | tig0018101:7951-7970 | Msa1363910:intron | 30.0% | |
| CAGCCATAGTTATCAATATT+GGG | + | tig0018101:7952-7971 | Msa1363910:intron | 30.0% | |
| ! | CAACCCAATATTGATAACTA+TGG | - | tig0018101:7958-7977 | None:intergenic | 30.0% |
| TCAGATAGAGCTAATACAAA+AGG | - | tig0018101:6619-6638 | None:intergenic | 30.0% | |
| ATCTTGCATCATTACTACAA+GGG | - | tig0018101:8081-8100 | None:intergenic | 30.0% | |
| AATCTTGCATCATTACTACA+AGG | - | tig0018101:8082-8101 | None:intergenic | 30.0% | |
| CTTTAAGCAATAAACATCAC+CGG | - | tig0018101:8129-8148 | None:intergenic | 30.0% | |
| TCCTAAAACTAAAACTGGTT+GGG | - | tig0018101:8633-8652 | None:intergenic | 30.0% | |
| ATCCTAAAACTAAAACTGGT+TGG | - | tig0018101:8634-8653 | None:intergenic | 30.0% | |
| ACCAGTTGTTAGAAGATATA+TGG | - | tig0018101:8787-8806 | None:intergenic | 30.0% | |
| !! | GTACTGAATTTGTTTTCTCA+TGG | + | tig0018101:8932-8951 | Msa1363910:intron | 30.0% |
| GAGGAAAATAAACCAGTAAA+AGG | - | tig0018101:9155-9174 | None:intergenic | 30.0% | |
| GAAATGTAAAAAATCACAGG+TGG | - | tig0018101:9259-9278 | None:intergenic | 30.0% | |
| GCAGAAATGTAAAAAATCAC+AGG | - | tig0018101:9262-9281 | None:intergenic | 30.0% | |
| !!! | TTGTTGATTTTCATAGTCGA+TGG | + | tig0018101:9374-9393 | Msa1363910:three_prime_UTR | 30.0% |
| !!! | TCACTGGTTTTTAGTTCTGA+AGG | - | tig0018101:5445-5464 | None:intergenic | 35.0% |
| AGCTTGACTTCGTTTAGATT+GGG | - | tig0018101:5631-5650 | None:intergenic | 35.0% | |
| !! | CAAACAGGGCTTATTTCTAT+AGG | - | tig0018101:5788-5807 | None:intergenic | 35.0% |
| CTATAGAAATAAGCCCTGTT+TGG | + | tig0018101:5786-5805 | Msa1363910:intron | 35.0% | |
| ACAAGTTGTTCATCCAAACA+GGG | - | tig0018101:5802-5821 | None:intergenic | 35.0% | |
| AACAAGTTGTTCATCCAAAC+AGG | - | tig0018101:5803-5822 | None:intergenic | 35.0% | |
| AGGAACATATGTTGCATGTT+TGG | - | tig0018101:6154-6173 | None:intergenic | 35.0% | |
| AAACAACGGAAAGAAACTCA+TGG | + | tig0018101:6266-6285 | Msa1363910:CDS | 35.0% | |
| TGGTTTGAATACCTGAATGA+TGG | + | tig0018101:6591-6610 | Msa1363910:intron | 35.0% | |
| GTGACAAATGATAAGGAGAA+TGG | - | tig0018101:6642-6661 | None:intergenic | 35.0% | |
| ATACAAAAATGCCATCATGC+AGG | - | tig0018101:6874-6893 | None:intergenic | 35.0% | |
| CACATGCATTATTACTGTTG+AGG | - | tig0018101:6945-6964 | None:intergenic | 35.0% | |
| ATCTAGGCAATCAAACCAAT+AGG | - | tig0018101:7160-7179 | None:intergenic | 35.0% | |
| ATACAAAAACGCCATCATCT+AGG | - | tig0018101:7176-7195 | None:intergenic | 35.0% | |
| !! | TAGGTGGGTTGGTTATTAAT+TGG | + | tig0018101:7356-7375 | Msa1363910:intron | 35.0% |
| ATCTAGCCAATCAAACCAAT+AGG | - | tig0018101:7462-7481 | None:intergenic | 35.0% | |
| !!! | TACAACTAGCTTTTGATTGC+TGG | + | tig0018101:7684-7703 | Msa1363910:intron | 35.0% |
| AATTGTCACAGCTTAAGCTT+TGG | + | tig0018101:7921-7940 | Msa1363910:intron | 35.0% | |
| TCTTGCATCATTACTACAAG+GGG | - | tig0018101:8080-8099 | None:intergenic | 35.0% | |
| ! | GAAATCTTTTCTTGTGGTAG+AGG | + | tig0018101:8152-8171 | Msa1363910:intron | 35.0% |
| AATACAAAATGCCATCATCC+AGG | - | tig0018101:8261-8280 | None:intergenic | 35.0% | |
| AATCCTACCCAAATTACACA+CGG | - | tig0018101:8371-8390 | None:intergenic | 35.0% | |
| TCTCAGCACATAACATTGAA+AGG | - | tig0018101:8476-8495 | None:intergenic | 35.0% | |
| !!! | TCCCAACCAGTTTTAGTTTT+AGG | + | tig0018101:8629-8648 | Msa1363910:intron | 35.0% |
| GCCATATATCTTCTAACAAC+TGG | + | tig0018101:8783-8802 | Msa1363910:CDS | 35.0% | |
| TAAGACAATTGCTGAATGCT+TGG | + | tig0018101:8833-8852 | Msa1363910:CDS | 35.0% | |
| AATAATGGTGGTATACCTGT+TGG | - | tig0018101:8892-8911 | None:intergenic | 35.0% | |
| ! | CTCATGGATTTTTCCTTGTT+TGG | + | tig0018101:8948-8967 | Msa1363910:intron | 35.0% |
| TGTTAGCAAAGAACCAAACA+AGG | - | tig0018101:8964-8983 | None:intergenic | 35.0% | |
| TCCAAATGATGCTTAACGAT+TGG | - | tig0018101:9047-9066 | None:intergenic | 35.0% | |
| ! | ACATGGTGTAAACCTTTTAC+TGG | + | tig0018101:9140-9159 | Msa1363910:three_prime_UTR | 35.0% |
| AATGATCCTTGAAACAGTCA+TGG | - | tig0018101:9220-9239 | None:intergenic | 35.0% | |
| ! | ATTACTCTAGCTTGGAAAAC+TGG | - | tig0018101:9313-9332 | None:intergenic | 35.0% |
| ! | GTATTGGTATTACTCTAGCT+TGG | - | tig0018101:9321-9340 | None:intergenic | 35.0% |
| AAAAACCAGTGAGAAGCTGA+CGG | + | tig0018101:5453-5472 | Msa1363910:five_prime_UTR | 40.0% | |
| AAGCTACCTTGTAGATAGTG+CGG | - | tig0018101:5484-5503 | None:intergenic | 40.0% | |
| GTTAACGAGAGAGATGAAGA+AGG | - | tig0018101:5532-5551 | None:intergenic | 40.0% | |
| TTGAATTATTCACGCAGCCA+TGG | + | tig0018101:5570-5589 | Msa1363910:intron | 40.0% | |
| GAGCTTGACTTCGTTTAGAT+TGG | - | tig0018101:5632-5651 | None:intergenic | 40.0% | |
| AAGTCAAGCTCTTCAACCAA+TGG | + | tig0018101:5641-5660 | Msa1363910:CDS | 40.0% | |
| AGATTACCGATCTGTCTCTT+GGG | + | tig0018101:6106-6125 | Msa1363910:intron | 40.0% | |
| TTAGTGAGCCTCTCAACAAT+GGG | - | tig0018101:6225-6244 | None:intergenic | 40.0% | |
| ACTAACTCTCTCATGATGCA+CGG | + | tig0018101:6240-6259 | Msa1363910:CDS | 40.0% | |
| GAAAGAAACTCATGGCTGTT+AGG | + | tig0018101:6274-6293 | Msa1363910:CDS | 40.0% | |
| TAGGATCATTAAGCATGCCA+TGG | + | tig0018101:6293-6312 | Msa1363910:CDS | 40.0% | |
| TAGCAAGTGAATGATCTCCA+TGG | - | tig0018101:6313-6332 | None:intergenic | 40.0% | |
| ACCTACTTACTCATCCGAAT+CGG | + | tig0018101:6805-6824 | Msa1363910:intron | 40.0% | |
| ! | AACTTTTCATCCTCCCGATT+CGG | - | tig0018101:6822-6841 | None:intergenic | 40.0% |
| TGCAGGCAATCAAACCAATA+GGG | - | tig0018101:6857-6876 | None:intergenic | 40.0% | |
| ATGCAGGCAATCAAACCAAT+AGG | - | tig0018101:6858-6877 | None:intergenic | 40.0% | |
| ! | GAGCTGTTGATTGTTTGAAC+TGG | + | tig0018101:7109-7128 | Msa1363910:intron | 40.0% |
| TGGTTTGATTGCCTAGATGA+TGG | + | tig0018101:7162-7181 | Msa1363910:intron | 40.0% | |
| ACTTGATAGAGAAGGATAGG+TGG | + | tig0018101:7340-7359 | Msa1363910:intron | 40.0% | |
| CTTGATAGAGAAGGATAGGT+GGG | + | tig0018101:7341-7360 | Msa1363910:intron | 40.0% | |
| ! | TGGTTTGATTGGCTAGATGA+TGG | + | tig0018101:7464-7483 | Msa1363910:intron | 40.0% |
| !! | TAGCTTTTGATTGCTGGAAC+CGG | + | tig0018101:7690-7709 | Msa1363910:intron | 40.0% |
| !! | TCAATATTGGGTTGATAGCC+AGG | + | tig0018101:7964-7983 | Msa1363910:intron | 40.0% |
| AATACAAAAGGCCATCATCC+TGG | - | tig0018101:7985-8004 | None:intergenic | 40.0% | |
| TAAGCAATAAACATCACCGG+AGG | - | tig0018101:8126-8145 | None:intergenic | 40.0% | |
| TCCAGGCAATCAAACCAATA+GGG | - | tig0018101:8244-8263 | None:intergenic | 40.0% | |
| ATCCAGGCAATCAAACCAAT+AGG | - | tig0018101:8245-8264 | None:intergenic | 40.0% | |
| ATTACACACGGCATCATCTA+GGG | - | tig0018101:8359-8378 | None:intergenic | 40.0% | |
| AATTACACACGGCATCATCT+AGG | - | tig0018101:8360-8379 | None:intergenic | 40.0% | |
| AGATGATGCCGTGTGTAATT+TGG | + | tig0018101:8360-8379 | Msa1363910:intron | 40.0% | |
| GATGATGCCGTGTGTAATTT+GGG | + | tig0018101:8361-8380 | Msa1363910:intron | 40.0% | |
| TCAAAGCAAAAACTGAGGCT+TGG | + | tig0018101:8598-8617 | Msa1363910:intron | 40.0% | |
| ! | ATTCTGGTTGCATCTTCTCT+AGG | - | tig0018101:8699-8718 | None:intergenic | 40.0% |
| AGAGAAGATGCAACCAGAAT+TGG | + | tig0018101:8699-8718 | Msa1363910:CDS | 40.0% | |
| TGTTCCTAAATGCAGCTTCA+CGG | - | tig0018101:8812-8831 | None:intergenic | 40.0% | |
| CAGCTATGCGATCAAGAAAA+AGG | + | tig0018101:8997-9016 | Msa1363910:intron | 40.0% | |
| GCCAATCGTTAAGCATCATT+TGG | + | tig0018101:9043-9062 | Msa1363910:exon | 40.0% | |
| ACAAGTCAATTCAACGTGAG+AGG | - | tig0018101:9174-9193 | None:intergenic | 40.0% | |
| CTTAGTCCATGACTGTTTCA+AGG | + | tig0018101:9211-9230 | Msa1363910:three_prime_UTR | 40.0% | |
| CTAGCTTGGAAAACTGGTAT+TGG | - | tig0018101:9307-9326 | None:intergenic | 40.0% | |
| TCAGCTTGGAAAACTGGTAT+TGG | - | tig0018101:9337-9356 | None:intergenic | 40.0% | |
| AATACTTCAACACGTCAGCT+TGG | - | tig0018101:9351-9370 | None:intergenic | 40.0% | |
| AAGGCAAAGCAAGAGTGACA+GGG | - | tig0018101:5426-5445 | None:intergenic | 45.0% | |
| GATTGGGATCAACTTCGACT+GGG | - | tig0018101:5615-5634 | None:intergenic | 45.0% | |
| AGATTGGGATCAACTTCGAC+TGG | - | tig0018101:5616-5635 | None:intergenic | 45.0% | |
| CAAGAGACAGATCGGTAATC+TGG | - | tig0018101:6107-6126 | None:intergenic | 45.0% | |
| CAGATTACCGATCTGTCTCT+TGG | + | tig0018101:6105-6124 | Msa1363910:intron | 45.0% | |
| GATTACCGATCTGTCTCTTG+GGG | + | tig0018101:6107-6126 | Msa1363910:intron | 45.0% | |
| GTAATCCCCAAGAGACAGAT+CGG | - | tig0018101:6115-6134 | None:intergenic | 45.0% | |
| CTGTCTCTTGGGGATTACAT+TGG | + | tig0018101:6117-6136 | Msa1363910:CDS | 45.0% | |
| ACATATGTTCCTCACACTGC+TGG | + | tig0018101:6162-6181 | Msa1363910:CDS | 45.0% | |
| GTTAGTGAGCCTCTCAACAA+TGG | - | tig0018101:6226-6245 | None:intergenic | 45.0% | |
| ATGATGCACGGCAGAAACAA+CGG | + | tig0018101:6252-6271 | Msa1363910:CDS | 45.0% | |
| ! | TAGTTGATGCTGTCGTCAAC+AGG | + | tig0018101:6358-6377 | Msa1363910:CDS | 45.0% |
| CCTACTTACTCATCCGAATC+GGG | + | tig0018101:6806-6825 | Msa1363910:intron | 45.0% | |
| TGGTTTGATTGCCTGCATGA+TGG | + | tig0018101:6860-6879 | Msa1363910:intron | 45.0% | |
| GCTCTATCTGATCATTCTCC+TGG | + | tig0018101:6896-6915 | Msa1363910:intron | 45.0% | |
| ATAGAGAAGGATAGGTGGGT+TGG | + | tig0018101:7345-7364 | Msa1363910:intron | 45.0% | |
| TAAGATTGGGGGCTGTTGAT+TGG | + | tig0018101:7402-7421 | Msa1363910:intron | 45.0% | |
| TGTACGAAAGGAAAGCAACC+TGG | + | tig0018101:7638-7657 | Msa1363910:intron | 45.0% | |
| !! | TCCCTATTGGTTTGATTGCC+TGG | + | tig0018101:6853-6872 | Msa1363910:intron | 45.0% |
| TGGTTTGATTGCCTGGATGA+TGG | + | tig0018101:8247-8266 | Msa1363910:intron | 45.0% | |
| ATGCCGTGTGTAATTTGGGT+AGG | + | tig0018101:8365-8384 | Msa1363910:intron | 45.0% | |
| AACTCCAGCAGATCCAATTC+TGG | - | tig0018101:8715-8734 | None:intergenic | 45.0% | |
| TTGGATCTGCTGGAGTTGTT+AGG | + | tig0018101:8718-8737 | Msa1363910:CDS | 45.0% | |
| TCCTCTTCGTCGTGTTAATC+AGG | + | tig0018101:8761-8780 | Msa1363910:CDS | 45.0% | |
| GTTCCTAAATGCAGCTTCAC+GGG | - | tig0018101:8811-8830 | None:intergenic | 45.0% | |
| TGAACTCATTAACGCTGCCA+AGG | + | tig0018101:8860-8879 | Msa1363910:CDS | 45.0% | |
| GAACTCATTAACGCTGCCAA+GGG | + | tig0018101:8861-8880 | Msa1363910:CDS | 45.0% | |
| ATACCTGTTGGATGAACCCT+TGG | - | tig0018101:8880-8899 | None:intergenic | 45.0% | |
| TGAGATTGAGAGAGTTGCCA+AGG | + | tig0018101:9021-9040 | Msa1363910:CDS | 45.0% | |
| !! | TGATGCTTAACGATTGGCCT+TGG | - | tig0018101:9041-9060 | None:intergenic | 45.0% |
| AACACGTCAGCTTGGAAAAC+TGG | - | tig0018101:9343-9362 | None:intergenic | 45.0% | |
| GAAGGCAAAGCAAGAGTGAC+AGG | - | tig0018101:5427-5446 | None:intergenic | 50.0% | |
| AACTTCGACTGGGATAGCGA+CGG | - | tig0018101:5605-5624 | None:intergenic | 50.0% | |
| GAACGTCGTCAAAGCTCCAT+TGG | - | tig0018101:5660-5679 | None:intergenic | 50.0% | |
| ! | ATGGAGCTTTGACGACGTTC+AGG | + | tig0018101:5660-5679 | Msa1363910:CDS | 50.0% |
| GGGGATTACATTGGAGCAAG+AGG | + | tig0018101:6126-6145 | Msa1363910:CDS | 50.0% | |
| ATGTTCCTCACACTGCTGGT+AGG | + | tig0018101:6166-6185 | Msa1363910:CDS | 50.0% | |
| !! | GGTACTCAAAGAAGCGCTTC+AGG | + | tig0018101:6187-6206 | Msa1363910:CDS | 50.0% |
| CTCAGTGTCCCATTGTTGAG+AGG | + | tig0018101:6214-6233 | Msa1363910:CDS | 50.0% | |
| !! | CCCGATTCGGATGAGTAAGT+AGG | - | tig0018101:6809-6828 | None:intergenic | 50.0% |
| ACTTACTCATCCGAATCGGG+AGG | + | tig0018101:6809-6828 | Msa1363910:intron | 50.0% | |
| ! | ATTGGGGGCTGTTGATTGGT+TGG | + | tig0018101:7406-7425 | Msa1363910:intron | 50.0% |
| !! | TGGGTTGATAGCCAGGATGA+TGG | + | tig0018101:7971-7990 | Msa1363910:intron | 50.0% |
| GCAACCAGAATTGGATCTGC+TGG | + | tig0018101:8708-8727 | Msa1363910:CDS | 50.0% | |
| GATCTGCTGGAGTTGTTAGG+AGG | + | tig0018101:8721-8740 | Msa1363910:CDS | 50.0% | |
| GCCTGATTAACACGACGAAG+AGG | - | tig0018101:8765-8784 | None:intergenic | 50.0% | |
| ACCTTGTAGATAGTGCGGCG+CGG | - | tig0018101:5479-5498 | None:intergenic | 55.0% | |
| AGCGACGGTTTCATCAGCCA+TGG | - | tig0018101:5590-5609 | None:intergenic | 55.0% | |
| GAGTACCTACCAGCAGTGTG+AGG | - | tig0018101:6174-6193 | None:intergenic | 55.0% | |
| ACAACTTGCAGCGTGCATCC+AGG | - | tig0018101:7659-7678 | None:intergenic | 55.0% | |
| TGCTGGAGTTGTTAGGAGGC+AGG | + | tig0018101:8725-8744 | Msa1363910:CDS | 55.0% | |
| AGTTGTTAGGAGGCAGGCTG+TGG | + | tig0018101:8731-8750 | Msa1363910:CDS | 55.0% | |
| GTGCCCGTGAAGCTGCATTT+AGG | + | tig0018101:8805-8824 | Msa1363910:CDS | 55.0% | |
| CTGCCAAGGGTTCATCCAAC+AGG | + | tig0018101:8874-8893 | Msa1363910:CDS | 55.0% | |
| GCCGCGCCGCACTATCTACA+AGG | + | tig0018101:5475-5494 | Msa1363910:five_prime_UTR | 65.0% | |
| CGCGGCCGTCAGCTTCTCAC+TGG | - | tig0018101:5461-5480 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018101 | gene | 5408 | 9413 | 5408 | ID=Msa1363910;Name=Msa1363910 |
| tig0018101 | mRNA | 5408 | 9413 | 5408 | ID=Msa1363910-mRNA-1;Parent=Msa1363910;Name=Msa1363910-mRNA-1;_AED=0.06;_eAED=0.06;_QI=91|1|1|1|0.6|0.33|6|329|207 |
| tig0018101 | exon | 5408 | 5496 | 5408 | ID=Msa1363910-mRNA-1:exon:13740;Parent=Msa1363910-mRNA-1 |
| tig0018101 | exon | 5587 | 5681 | 5587 | ID=Msa1363910-mRNA-1:exon:13741;Parent=Msa1363910-mRNA-1 |
| tig0018101 | exon | 6108 | 6379 | 6108 | ID=Msa1363910-mRNA-1:exon:13742;Parent=Msa1363910-mRNA-1 |
| tig0018101 | exon | 8692 | 8895 | 8692 | ID=Msa1363910-mRNA-1:exon:13743;Parent=Msa1363910-mRNA-1 |
| tig0018101 | exon | 9000 | 9322 | 9000 | ID=Msa1363910-mRNA-1:exon:13744;Parent=Msa1363910-mRNA-1 |
| tig0018101 | exon | 9353 | 9413 | 9353 | ID=Msa1363910-mRNA-1:exon:13745;Parent=Msa1363910-mRNA-1 |
| tig0018101 | five_prime_UTR | 5408 | 5496 | 5408 | ID=Msa1363910-mRNA-1:five_prime_utr;Parent=Msa1363910-mRNA-1 |
| tig0018101 | five_prime_UTR | 5587 | 5588 | 5587 | ID=Msa1363910-mRNA-1:five_prime_utr;Parent=Msa1363910-mRNA-1 |
| tig0018101 | CDS | 5589 | 5681 | 5589 | ID=Msa1363910-mRNA-1:cds;Parent=Msa1363910-mRNA-1 |
| tig0018101 | CDS | 6108 | 6379 | 6108 | ID=Msa1363910-mRNA-1:cds;Parent=Msa1363910-mRNA-1 |
| tig0018101 | CDS | 8692 | 8895 | 8692 | ID=Msa1363910-mRNA-1:cds;Parent=Msa1363910-mRNA-1 |
| tig0018101 | CDS | 9000 | 9054 | 9000 | ID=Msa1363910-mRNA-1:cds;Parent=Msa1363910-mRNA-1 |
| tig0018101 | three_prime_UTR | 9055 | 9322 | 9055 | ID=Msa1363910-mRNA-1:three_prime_utr;Parent=Msa1363910-mRNA-1 |
| tig0018101 | three_prime_UTR | 9353 | 9413 | 9353 | ID=Msa1363910-mRNA-1:three_prime_utr;Parent=Msa1363910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
