Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277960 | XP_003594386.1 | 98.898 | 363 | 4 | 0 | 1 | 363 | 1 | 363 | 0.0 | 759 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277960 | sp|Q9Y7K5|YGI3_SCHPO | 25.676 | 296 | 188 | 12 | 66 | 355 | 66 | 335 | 8.29e-14 | 76.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024400 | Msa0277960 | 0.804319 | 2.286609e-49 | -8.615850e-47 |
| Msa0110220 | Msa0277960 | 0.805846 | 1.096036e-49 | -8.615850e-47 |
| Msa0117520 | Msa0277960 | 0.831257 | 1.849531e-55 | -8.615850e-47 |
| Msa0160960 | Msa0277960 | 0.806795 | 6.914513e-50 | -8.615850e-47 |
| Msa0163510 | Msa0277960 | 0.808287 | 3.335903e-50 | -8.615850e-47 |
| Msa0168310 | Msa0277960 | 0.802651 | 5.071373e-49 | -8.615850e-47 |
| Msa0189530 | Msa0277960 | 0.805331 | 1.405450e-49 | -8.615850e-47 |
| Msa0233370 | Msa0277960 | 0.804226 | 2.391111e-49 | -8.615850e-47 |
| Msa0277960 | Msa0316390 | 0.801979 | 6.971865e-49 | -8.615850e-47 |
| Msa0277960 | Msa0341480 | 0.804586 | 2.011558e-49 | -8.615850e-47 |
| Msa0277960 | Msa0439980 | 0.809463 | 1.868879e-50 | -8.615850e-47 |
| Msa0277960 | Msa0440510 | 0.805070 | 1.594031e-49 | -8.615850e-47 |
| Msa0277960 | Msa0470880 | 0.805085 | 1.582957e-49 | -8.615850e-47 |
| Msa0277960 | Msa0525770 | 0.957144 | 5.499015e-115 | -8.615850e-47 |
| Msa0277960 | Msa0528990 | 0.804933 | 1.702963e-49 | -8.615850e-47 |
| Msa0277960 | Msa0545050 | 0.806867 | 6.675796e-50 | -8.615850e-47 |
| Msa0277960 | Msa0600590 | 0.804312 | 2.294257e-49 | -8.615850e-47 |
| Msa0277960 | Msa0623990 | 0.800093 | 1.694337e-48 | -8.615850e-47 |
| Msa0277960 | Msa0624060 | 0.808288 | 3.333842e-50 | -8.615850e-47 |
| Msa0277960 | Msa0641130 | 0.806858 | 6.706766e-50 | -8.615850e-47 |
| Msa0277960 | Msa0645530 | 0.804748 | 1.861596e-49 | -8.615850e-47 |
| Msa0277960 | Msa0651560 | 0.811561 | 6.582082e-51 | -8.615850e-47 |
| Msa0277960 | Msa0673120 | 0.806586 | 7.653507e-50 | -8.615850e-47 |
| Msa0277960 | Msa0676130 | 0.805251 | 1.460613e-49 | -8.615850e-47 |
| Msa0277960 | Msa0676180 | 0.808916 | 2.447507e-50 | -8.615850e-47 |
| Msa0277960 | Msa0685090 | 0.807745 | 4.349874e-50 | -8.615850e-47 |
| Msa0277960 | Msa0756380 | 0.821166 | 4.665254e-53 | -8.615850e-47 |
| Msa0277960 | Msa0791390 | 0.943318 | 1.493282e-102 | -8.615850e-47 |
| Msa0277960 | Msa0795340 | 0.802474 | 5.514211e-49 | -8.615850e-47 |
| Msa0277960 | Msa0819490 | 0.803580 | 3.257297e-49 | -8.615850e-47 |
| Msa0277960 | Msa0878220 | 0.819449 | 1.154877e-52 | -8.615850e-47 |
| Msa0277960 | Msa0943970 | 0.854906 | 9.008968e-62 | -8.615850e-47 |
| Msa0277960 | Msa0944020 | 0.834116 | 3.610486e-56 | -8.615850e-47 |
| Msa0277960 | Msa0945630 | 0.801091 | 1.060141e-48 | -8.615850e-47 |
| Msa0277960 | Msa0985180 | 0.802384 | 5.756618e-49 | -8.615850e-47 |
| Msa0277960 | Msa1047760 | 0.845141 | 4.886664e-59 | -8.615850e-47 |
| Msa0277960 | Msa1101220 | 0.814624 | 1.401613e-51 | -8.615850e-47 |
| Msa0277960 | Msa1122150 | 0.817268 | 3.601497e-52 | -8.615850e-47 |
| Msa0277960 | Msa1140630 | 0.804843 | 1.777840e-49 | -8.615850e-47 |
| Msa0277960 | Msa1152780 | -0.812231 | 4.703714e-51 | -8.615850e-47 |
| Msa0277960 | Msa1158370 | 0.815681 | 8.160535e-52 | -8.615850e-47 |
| Msa0277960 | Msa1160560 | 0.800580 | 1.348236e-48 | -8.615850e-47 |
| Msa0277960 | Msa1175100 | 0.815831 | 7.558362e-52 | -8.615850e-47 |
| Msa0277960 | Msa1213890 | 0.820314 | 7.322561e-53 | -8.615850e-47 |
| Msa0277960 | Msa1218620 | 0.805444 | 1.330936e-49 | -8.615850e-47 |
| Msa0277960 | Msa1224170 | 0.809677 | 1.681096e-50 | -8.615850e-47 |
| Msa0277960 | Msa1234470 | 0.809270 | 2.056002e-50 | -8.615850e-47 |
| Msa0277960 | Msa1325410 | -0.801981 | 6.967711e-49 | -8.615850e-47 |
| Msa0277960 | Msa1342380 | 0.804806 | 1.810323e-49 | -8.615850e-47 |
| Msa0277960 | Msa1378410 | 0.812117 | 4.982448e-51 | -8.615850e-47 |
| Msa0277960 | Msa1387680 | 0.807260 | 5.512734e-50 | -8.615850e-47 |
| Msa0277960 | Msa1410800 | 0.813608 | 2.348532e-51 | -8.615850e-47 |
| Msa0277960 | Msa1411250 | 0.850675 | 1.456635e-60 | -8.615850e-47 |
| Msa0277960 | Msa1419840 | 0.832820 | 7.601065e-56 | -8.615850e-47 |
| Msa0277960 | Msa1452710 | 0.820633 | 6.186651e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277960 | MtrunA17_Chr2g0291111 | 98.898 | 363 | 4 | 0 | 1 | 363 | 1 | 363 | 0.0 | 759 |
| Msa0277960 | MtrunA17_Chr3g0079951 | 72.222 | 360 | 100 | 0 | 4 | 363 | 3 | 362 | 0.0 | 551 |
| Msa0277960 | MtrunA17_Chr3g0080001 | 64.110 | 365 | 120 | 4 | 1 | 363 | 1 | 356 | 4.01e-172 | 489 |
| Msa0277960 | MtrunA17_Chr7g0222331 | 68.125 | 320 | 101 | 1 | 44 | 363 | 37 | 355 | 9.22e-166 | 474 |
| Msa0277960 | MtrunA17_Chr3g0115611 | 57.325 | 314 | 132 | 2 | 51 | 363 | 61 | 373 | 6.03e-129 | 380 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277960 | AT3G13340.1 | 71.038 | 366 | 99 | 3 | 1 | 363 | 1 | 362 | 0.0 | 549 |
| Msa0277960 | AT3G13340.3 | 71.038 | 366 | 99 | 3 | 1 | 363 | 1 | 362 | 0.0 | 549 |
| Msa0277960 | AT3G13340.2 | 71.038 | 366 | 99 | 3 | 1 | 363 | 1 | 362 | 0.0 | 549 |
| Msa0277960 | AT1G55680.1 | 70.248 | 363 | 105 | 1 | 1 | 363 | 1 | 360 | 0.0 | 545 |
| Msa0277960 | AT5G56190.2 | 66.667 | 366 | 115 | 3 | 1 | 363 | 1 | 362 | 0.0 | 514 |
| Msa0277960 | AT5G56190.6 | 66.667 | 366 | 115 | 3 | 1 | 363 | 1 | 362 | 0.0 | 514 |
| Msa0277960 | AT5G56190.4 | 66.667 | 366 | 115 | 3 | 1 | 363 | 1 | 362 | 0.0 | 514 |
| Msa0277960 | AT5G56190.5 | 66.667 | 366 | 115 | 3 | 1 | 363 | 1 | 362 | 0.0 | 514 |
| Msa0277960 | AT5G56190.3 | 67.606 | 355 | 110 | 2 | 10 | 363 | 6 | 356 | 2.35e-179 | 509 |
| Msa0277960 | AT5G56190.1 | 67.606 | 355 | 110 | 2 | 10 | 363 | 6 | 356 | 2.35e-179 | 509 |
| Msa0277960 | AT5G56190.7 | 67.606 | 355 | 110 | 2 | 10 | 363 | 27 | 377 | 1.71e-178 | 507 |
| Msa0277960 | AT1G78070.1 | 52.877 | 365 | 169 | 2 | 1 | 363 | 1 | 364 | 1.73e-127 | 377 |
| Msa0277960 | AT1G36070.1 | 53.916 | 332 | 147 | 3 | 35 | 363 | 5 | 333 | 6.35e-126 | 372 |
| Msa0277960 | AT1G36070.2 | 54.268 | 328 | 146 | 3 | 40 | 363 | 5 | 332 | 1.34e-125 | 371 |
| Msa0277960 | AT1G36070.4 | 55.272 | 313 | 137 | 2 | 54 | 363 | 3 | 315 | 5.32e-124 | 366 |
| Msa0277960 | AT1G78070.2 | 53.414 | 249 | 115 | 1 | 115 | 363 | 7 | 254 | 3.39e-93 | 285 |
| Msa0277960 | AT1G78070.3 | 56.223 | 233 | 102 | 0 | 131 | 363 | 23 | 255 | 7.36e-92 | 282 |
| Msa0277960 | AT1G36070.3 | 52.830 | 212 | 100 | 0 | 152 | 363 | 3 | 214 | 3.09e-80 | 251 |
| Msa0277960 | AT1G36070.5 | 52.830 | 212 | 100 | 0 | 152 | 363 | 3 | 214 | 3.09e-80 | 251 |
Find 139 sgRNAs with CRISPR-Local
Find 391 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGATTGTATTACGATTTC+TGG | 0.130313 | 2_3:-10849236 | Msa0277960:CDS |
| TCTGAAGTTCTCAATGTATC+AGG | 0.276261 | 2_3:-10848772 | Msa0277960:CDS |
| GTAGAATGGCTTACATTTAC+TGG | 0.277210 | 2_3:+10847179 | None:intergenic |
| GAGTGCAAAGTAACACAAAA+AGG | 0.280473 | 2_3:-10849258 | Msa0277960:CDS |
| ATTACAAGTTGTTTCCCATT+AGG | 0.291190 | 2_3:+10845254 | None:intergenic |
| AAGATAAAACATGCCGCATT+TGG | 0.295126 | 2_3:-10844988 | Msa0277960:CDS |
| CACATCTGATGGGCGGTATA+TGG | 0.306053 | 2_3:-10844895 | Msa0277960:CDS |
| CAGTGGAGCTGTACATTTCA+TGG | 0.316630 | 2_3:-10847279 | Msa0277960:CDS |
| CTGCAGTGGTATCTGTTATT+CGG | 0.324070 | 2_3:+10849526 | None:intergenic |
| CAAACAATGATGGTGGAATC+AGG | 0.329381 | 2_3:-10847253 | Msa0277960:CDS |
| TAGGGTTTGTTCTGGATCTC+AGG | 0.330252 | 2_3:+10850503 | None:intergenic |
| CGTGATAACTTGTTGATTGC+TGG | 0.331239 | 2_3:-10848592 | Msa0277960:CDS |
| AGGTGCAGCGCCTTGAGGTT+AGG | 0.334060 | 2_3:+10850484 | None:intergenic |
| CATACTTCATTAAGCCCTAA+TGG | 0.339680 | 2_3:-10845269 | Msa0277960:CDS |
| TATGAAAATATACCACAATC+TGG | 0.344776 | 2_3:-10849402 | Msa0277960:CDS |
| AGACAACCCAGATGGTTTAC+TGG | 0.344951 | 2_3:-10845225 | Msa0277960:CDS |
| TTACAAGTTGTTTCCCATTA+GGG | 0.345847 | 2_3:+10845255 | None:intergenic |
| CTTGAGGTTAGGGTTTGTTC+TGG | 0.360436 | 2_3:+10850495 | None:intergenic |
| CGACGATGAATATGATCCTT+TGG | 0.365677 | 2_3:-10849860 | Msa0277960:intron |
| AAAGTCTGTTGCTGTTCTTA+AGG | 0.371400 | 2_3:-10844948 | Msa0277960:CDS |
| AAGTCTGTTGCTGTTCTTAA+GGG | 0.372378 | 2_3:-10844947 | Msa0277960:CDS |
| CGAAGCATTCATGCTTTCCT+TGG | 0.373023 | 2_3:-10847202 | Msa0277960:CDS |
| GGTGCAGCGCCTTGAGGTTA+GGG | 0.380631 | 2_3:+10850485 | None:intergenic |
| TGCTGTTCTTAAGGGGAACT+TGG | 0.385064 | 2_3:-10844939 | Msa0277960:CDS |
| GGGAAACAACTTGTAATTGT+TGG | 0.386167 | 2_3:-10845248 | Msa0277960:CDS |
| CCAATCCCCAACACAGAATC+AGG | 0.390571 | 2_3:-10850458 | Msa0277960:intron |
| AAACCCTCCAAGAGGCTTCC+CGG | 0.396154 | 2_3:+10848646 | None:intergenic |
| CCTGATTCTGTGTTGGGGAT+TGG | 0.410269 | 2_3:+10850458 | None:intergenic |
| CACATTACTCAATTGTTCAC+TGG | 0.413639 | 2_3:-10848816 | Msa0277960:CDS |
| TGGAATCAGGGACTTTGATA+TGG | 0.416103 | 2_3:-10847240 | Msa0277960:CDS |
| GAATTGCGATGAAGCAGATT+TGG | 0.418964 | 2_3:+10850556 | None:intergenic |
| GGCAGCTGAGAAACTTAGTT+TGG | 0.422864 | 2_3:-10848870 | Msa0277960:intron |
| TTTCTTCTTTCTACTTCCCT+TGG | 0.428627 | 2_3:+10844581 | None:intergenic |
| TTGTTCTCGAACTACGTATG+AGG | 0.432983 | 2_3:-10847477 | Msa0277960:CDS |
| AGATAAAACATGCCGCATTT+GGG | 0.435179 | 2_3:-10844987 | Msa0277960:CDS |
| TGGTGACCTGATTCTGTGTT+GGG | 0.435677 | 2_3:+10850452 | None:intergenic |
| CATGCCGCATTTGGGATGTT+CGG | 0.441423 | 2_3:-10844979 | Msa0277960:CDS |
| AAACATGGCTTGAGGATGTT+GGG | 0.443968 | 2_3:-10844527 | Msa0277960:three_prime_UTR |
| GTTAAATAATAATTAAAGAA+AGG | 0.445489 | 2_3:-10844486 | Msa0277960:three_prime_UTR |
| TGTTCTGGATCTCAGGGATA+AGG | 0.445855 | 2_3:+10850510 | None:intergenic |
| TCAATACCATGGGGATGAAA+TGG | 0.455707 | 2_3:-10849980 | Msa0277960:CDS |
| ATACTTCATTAAGCCCTAAT+GGG | 0.456324 | 2_3:-10845268 | Msa0277960:CDS |
| TTACTGGTGGATGCTCAAAC+TGG | 0.459274 | 2_3:-10845209 | Msa0277960:CDS |
| GAAACATCCGGGAAGCCTCT+TGG | 0.460435 | 2_3:-10848653 | Msa0277960:CDS |
| TTAAATAATAATTAAAGAAA+GGG | 0.461364 | 2_3:-10844485 | Msa0277960:three_prime_UTR |
| ATGAAAATATACCACAATCT+GGG | 0.463494 | 2_3:-10849401 | Msa0277960:CDS |
| GTGATAACTTGTTGATTGCT+GGG | 0.466192 | 2_3:-10848591 | Msa0277960:CDS |
| TGCACCTCTATGCGGACACT+TGG | 0.466389 | 2_3:-10845068 | Msa0277960:CDS |
| TCAATACGCTTCACATCTGA+TGG | 0.477657 | 2_3:-10844906 | Msa0277960:CDS |
| GCATCCACCAGTAAACCATC+TGG | 0.480791 | 2_3:+10845218 | None:intergenic |
| TTTCGTGGCGGGAGAGCGCT+TGG | 0.483027 | 2_3:-10849907 | Msa0277960:CDS |
| AATCAAGATAGGTATAGTTT+CGG | 0.485908 | 2_3:+10844694 | None:intergenic |
| AATTTACAAGTAATCAAGAT+AGG | 0.487243 | 2_3:+10844683 | None:intergenic |
| ATGAAGTATTGTTGACTTCA+CGG | 0.491114 | 2_3:+10849200 | None:intergenic |
| AGGGTTTGTTCTGGATCTCA+GGG | 0.497049 | 2_3:+10850504 | None:intergenic |
| CACTGCAGCTGAAGCTAGGA+GGG | 0.506637 | 2_3:-10849511 | Msa0277960:CDS |
| TTCATGGCTTCAAACAATGA+TGG | 0.511644 | 2_3:-10847263 | Msa0277960:CDS |
| TCTGACAGTTCCCCAGATTG+TGG | 0.511760 | 2_3:+10849390 | None:intergenic |
| AGGATATTCAAGGTATACCT+TGG | 0.520079 | 2_3:-10849485 | Msa0277960:CDS |
| TTGAGATTTATGAGCATCCC+AGG | 0.524294 | 2_3:-10847433 | Msa0277960:intron |
| TGCAGTACTTAGACCGACCC+GGG | 0.525488 | 2_3:-10847508 | Msa0277960:intron |
| CCTCCTAGCTTCAGCTGCAG+TGG | 0.526982 | 2_3:+10849512 | None:intergenic |
| ATAATTAAAGAAAGGGAAGG+AGG | 0.528850 | 2_3:-10844478 | Msa0277960:three_prime_UTR |
| GGTGTATGGGATCGTACCTA+TGG | 0.529375 | 2_3:-10844741 | Msa0277960:CDS |
| ATACCACTGCAGCTGAAGCT+AGG | 0.532089 | 2_3:-10849515 | Msa0277960:CDS |
| GGATATTCAAGGTATACCTT+GGG | 0.533298 | 2_3:-10849484 | Msa0277960:CDS |
| TGCAAAGCAAGGATTTGAAA+AGG | 0.535038 | 2_3:-10844835 | Msa0277960:CDS |
| CTTGGATTATTCATTTGCAT+CGG | 0.538168 | 2_3:-10845050 | Msa0277960:CDS |
| TCTTTAATTATTATTTAACA+TGG | 0.541092 | 2_3:+10844490 | None:intergenic |
| TCTGTGTTGGGGATTGGTGA+AGG | 0.541497 | 2_3:+10850464 | None:intergenic |
| TCAAGGAGAGCTTATTTGCA+AGG | 0.543023 | 2_3:-10848563 | Msa0277960:intron |
| GTGTTGCTAACAGAAACATC+CGG | 0.547014 | 2_3:-10848665 | Msa0277960:intron |
| ATGGTGACCTGATTCTGTGT+TGG | 0.550430 | 2_3:+10850451 | None:intergenic |
| CAGAACATGGCTCAATACCA+TGG | 0.553820 | 2_3:-10849991 | Msa0277960:exon |
| GCATCGGCATGGCATCCTGA+TGG | 0.554082 | 2_3:-10845034 | Msa0277960:CDS |
| AAACAATGATGGTGGAATCA+GGG | 0.554650 | 2_3:-10847252 | Msa0277960:CDS |
| TGGCTTACATTTACTGGCCA+AGG | 0.556085 | 2_3:+10847185 | None:intergenic |
| AAAACATGGCTTGAGGATGT+TGG | 0.557034 | 2_3:-10844528 | Msa0277960:three_prime_UTR |
| ACATCCGGGAAGCCTCTTGG+AGG | 0.557479 | 2_3:-10848650 | Msa0277960:CDS |
| AGGAGGGGAAAGGATATTCA+AGG | 0.561263 | 2_3:-10849495 | Msa0277960:CDS |
| AAGGGAAGTAGAAAGAAGAA+AGG | 0.562761 | 2_3:-10844579 | Msa0277960:three_prime_UTR |
| TAATTAAAGAAAGGGAAGGA+GGG | 0.565551 | 2_3:-10844477 | Msa0277960:three_prime_UTR |
| GACAGTATTTATATTACCAA+GGG | 0.566044 | 2_3:-10844597 | Msa0277960:three_prime_UTR |
| TGAAATTCACAGATATCAAG+TGG | 0.570848 | 2_3:-10850026 | Msa0277960:intron |
| ATTATTCATTTGCATCGGCA+TGG | 0.572987 | 2_3:-10845045 | Msa0277960:CDS |
| TAGACATGCACAAAGTCAGC+TGG | 0.575901 | 2_3:+10844861 | None:intergenic |
| TGACAGTATTTATATTACCA+AGG | 0.578605 | 2_3:-10844598 | Msa0277960:three_prime_UTR |
| AGAAGAAAGGTGAACTGACA+TGG | 0.580682 | 2_3:-10844566 | Msa0277960:three_prime_UTR |
| AGAACATGGCTCAATACCAT+GGG | 0.581287 | 2_3:-10849990 | Msa0277960:exon |
| ATGGCTTCAAACAATGATGG+TGG | 0.583087 | 2_3:-10847260 | Msa0277960:CDS |
| CATCCGGGAAGCCTCTTGGA+GGG | 0.591045 | 2_3:-10848649 | Msa0277960:CDS |
| AGTCTGTTGCTGTTCTTAAG+GGG | 0.593366 | 2_3:-10844946 | Msa0277960:CDS |
| CTGAAGTTCTCAATGTATCA+GGG | 0.594254 | 2_3:-10848771 | Msa0277960:CDS |
| TGAAAATATACCACAATCTG+GGG | 0.594686 | 2_3:-10849400 | Msa0277960:CDS |
| CCACTGCAGCTGAAGCTAGG+AGG | 0.595739 | 2_3:-10849512 | Msa0277960:CDS |
| AGCTGAAGCTAGGAGGGGAA+AGG | 0.598359 | 2_3:-10849505 | Msa0277960:CDS |
| GGTGAAGGTGCAGCGCCTTG+AGG | 0.600594 | 2_3:+10850479 | None:intergenic |
| CGAGAACAAAAGCTAACCCC+GGG | 0.608346 | 2_3:+10847491 | None:intergenic |
| ATAATAATTAAAGAAAGGGA+AGG | 0.609438 | 2_3:-10844481 | Msa0277960:three_prime_UTR |
| TTCAAGGTATACCTTGGGAT+AGG | 0.609582 | 2_3:-10849479 | Msa0277960:CDS |
| ATCTGGGGAACTGTCAGAGA+AGG | 0.611294 | 2_3:-10849385 | Msa0277960:intron |
| GAACTGAAGAAGACTTCCAT+AGG | 0.612333 | 2_3:+10844725 | None:intergenic |
| TTGCAGTACTTAGACCGACC+CGG | 0.612988 | 2_3:-10847509 | Msa0277960:intron |
| GCACAAATTATTACCTCACA+TGG | 0.613998 | 2_3:+10848739 | None:intergenic |
| CATCCACCAGTAAACCATCT+GGG | 0.614282 | 2_3:+10845219 | None:intergenic |
| TGATAACTTGTTGATTGCTG+GGG | 0.614938 | 2_3:-10848590 | Msa0277960:CDS |
| TGTTGCTAACAGAAACATCC+GGG | 0.615478 | 2_3:-10848664 | Msa0277960:intron |
| GGTGGATGCTCAAACTGGAA+AGG | 0.616996 | 2_3:-10845204 | Msa0277960:intron |
| CATACTCCATTTCATCCCCA+TGG | 0.617585 | 2_3:+10849974 | None:intergenic |
| TGATGGGCGGTATATGGCAA+TGG | 0.618608 | 2_3:-10844889 | Msa0277960:CDS |
| AGATGATAATGAGATGGCTG+AGG | 0.621081 | 2_3:-10849947 | Msa0277960:CDS |
| ATTGTTGGAGACAACCCAGA+TGG | 0.621293 | 2_3:-10845233 | Msa0277960:CDS |
| GTGAACTCTACCGCAGAACA+TGG | 0.621753 | 2_3:-10850004 | Msa0277960:exon |
| TAATCCAAGTGTCCGCATAG+AGG | 0.626398 | 2_3:+10845064 | None:intergenic |
| CAGAACAAACCCTAACCTCA+AGG | 0.626634 | 2_3:-10850494 | Msa0277960:five_prime_UTR |
| TCGAGAACAAAAGCTAACCC+CGG | 0.626956 | 2_3:+10847490 | None:intergenic |
| CAATACGCTTCACATCTGAT+GGG | 0.630378 | 2_3:-10844905 | Msa0277960:CDS |
| AACATGGCTTGAGGATGTTG+GGG | 0.633707 | 2_3:-10844526 | Msa0277960:three_prime_UTR |
| TCAGACACAAATTAGTACAC+TGG | 0.635185 | 2_3:-10848620 | Msa0277960:CDS |
| CAACCCAGATGGTTTACTGG+TGG | 0.637863 | 2_3:-10845222 | Msa0277960:CDS |
| AAATACTAGACAAAAGTACA+TGG | 0.641672 | 2_3:+10844637 | None:intergenic |
| GGTGACCTGATTCTGTGTTG+GGG | 0.643916 | 2_3:+10850453 | None:intergenic |
| TCATCATATAGTGTAAAACA+TGG | 0.649993 | 2_3:-10844542 | Msa0277960:three_prime_UTR |
| GATTCCGAACATCCCAAATG+CGG | 0.650878 | 2_3:+10844975 | None:intergenic |
| TGGTATTGAGCCATGTTCTG+CGG | 0.651543 | 2_3:+10849994 | None:intergenic |
| TGGTGAATCTGATACTGATG+AGG | 0.652098 | 2_3:-10849887 | Msa0277960:CDS |
| AACAAAAGCTAACCCCGGGT+CGG | 0.654067 | 2_3:+10847495 | None:intergenic |
| GATAACTTGTTGATTGCTGG+GGG | 0.661769 | 2_3:-10848589 | Msa0277960:CDS |
| AGGGCATGTTGCTCCATGTG+AGG | 0.663284 | 2_3:-10848752 | Msa0277960:intron |
| TACGCTTCACATCTGATGGG+CGG | 0.669620 | 2_3:-10844902 | Msa0277960:CDS |
| ACTGCAGCTGAAGCTAGGAG+GGG | 0.672337 | 2_3:-10849510 | Msa0277960:CDS |
| TGTTCAAGATGATAATGAGA+TGG | 0.677180 | 2_3:-10849953 | Msa0277960:CDS |
| CATGTCTATGATGCAAAGCA+AGG | 0.680192 | 2_3:-10844846 | Msa0277960:CDS |
| TCTGAGTAAAACCCTCCAAG+AGG | 0.686637 | 2_3:+10848638 | None:intergenic |
| GTAATGCTCAGCCTATCCCA+AGG | 0.694656 | 2_3:+10849468 | None:intergenic |
| TAGACTATTGCACCTCTATG+CGG | 0.699150 | 2_3:-10845076 | Msa0277960:CDS |
| ATAGTGTAAAACATGGCTTG+AGG | 0.708015 | 2_3:-10844535 | Msa0277960:three_prime_UTR |
| GCAGTACTTAGACCGACCCG+GGG | 0.732422 | 2_3:-10847507 | Msa0277960:intron |
| GAACATGGCTCAATACCATG+GGG | 0.755547 | 2_3:-10849989 | Msa0277960:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATATTAATTAAATTAT+CGG | + | chr2_3:10846048-10846067 | None:intergenic | 0.0% |
| !!! | CTTTTTTTTTTTTTTTTTTG+TGG | - | chr2_3:10845182-10845201 | Msa0277960:intron | 10.0% |
| !! | GGTAAAAAAAAAAATATAAA+AGG | + | chr2_3:10846671-10846690 | None:intergenic | 10.0% |
| !! | AAAATATAAGAAAAAAAGAA+GGG | + | chr2_3:10847576-10847595 | None:intergenic | 10.0% |
| !! | TAAAATATAAGAAAAAAAGA+AGG | + | chr2_3:10847577-10847596 | None:intergenic | 10.0% |
| !!! | TTCTTTTTTTCTTATATTTT+AGG | - | chr2_3:10847576-10847595 | Msa0277960:intron | 10.0% |
| !!! | TCTTTTTTTCTTATATTTTA+GGG | - | chr2_3:10847577-10847596 | Msa0277960:intron | 10.0% |
| !! | TAAAAAATAAAATAAAAGAG+GGG | + | chr2_3:10848135-10848154 | None:intergenic | 10.0% |
| !!! | AAGAGTATAAAATATATTTA+CGG | + | chr2_3:10848630-10848649 | None:intergenic | 10.0% |
| !! | AATTAATAGCTAAAAATAAA+TGG | + | chr2_3:10848846-10848865 | None:intergenic | 10.0% |
| !!! | CTATTTTTAAATATTTGTAT+AGG | + | chr2_3:10849058-10849077 | None:intergenic | 10.0% |
| !! | CTATACAAATATTTAAAAAT+AGG | - | chr2_3:10849056-10849075 | Msa0277960:intron | 10.0% |
| !! | TCTTTAATTATTATTTAACA+TGG | + | chr2_3:10850473-10850492 | None:intergenic | 10.0% |
| !! | GTTAAATAATAATTAAAGAA+AGG | - | chr2_3:10850474-10850493 | Msa0277960:five_prime_UTR | 10.0% |
| !! | AATTAAATTGAATTGAATTG+AGG | + | chr2_3:10844607-10844626 | None:intergenic | 15.0% |
| !!! | CTGAATTTTATAAACTAATT+TGG | - | chr2_3:10844899-10844918 | Msa0277960:CDS | 15.0% |
| !!! | AAAAGAAAAAAAAAGGTATA+GGG | + | chr2_3:10845667-10845686 | None:intergenic | 15.0% |
| !! | TAAAATCAGAAAGTTATAAA+AGG | + | chr2_3:10846757-10846776 | None:intergenic | 15.0% |
| !! | TACTATAACTAAAATCATAT+GGG | + | chr2_3:10846782-10846801 | None:intergenic | 15.0% |
| !! | TTACTATAACTAAAATCATA+TGG | + | chr2_3:10846783-10846802 | None:intergenic | 15.0% |
| !! | AAATATAAGAAAAAAAGAAG+GGG | + | chr2_3:10847575-10847594 | None:intergenic | 15.0% |
| !! | AAAAAATAAAATAAAAGAGG+GGG | + | chr2_3:10848134-10848153 | None:intergenic | 15.0% |
| !!! | GTATAGTTTTATTTAAATCA+TGG | + | chr2_3:10848354-10848373 | None:intergenic | 15.0% |
| !! | ATGTAAAAGAAAACATTAAT+TGG | - | chr2_3:10849372-10849391 | Msa0277960:intron | 15.0% |
| !!! | AATTTTCATATACTAGAATT+GGG | + | chr2_3:10849641-10849660 | None:intergenic | 15.0% |
| !!! | AAATTTTCATATACTAGAAT+TGG | + | chr2_3:10849642-10849661 | None:intergenic | 15.0% |
| !!! | TATTTTACGCAAATTTTGTT+CGG | - | chr2_3:10844674-10844693 | Msa0277960:CDS | 20.0% |
| !! | ATATCTGTGAATTTCATAAA+TGG | + | chr2_3:10844930-10844949 | None:intergenic | 20.0% |
| !! | TTGAATGACATTTGTATTAT+TGG | - | chr2_3:10845264-10845283 | Msa0277960:CDS | 20.0% |
| !!! | GAAAAGAAAAAAAAAGGTAT+AGG | + | chr2_3:10845668-10845687 | None:intergenic | 20.0% |
| !! | TAATTAAGAATTAACGTACT+TGG | + | chr2_3:10845788-10845807 | None:intergenic | 20.0% |
| !! | CTTCAAATGATTAAACTAAA+AGG | + | chr2_3:10845815-10845834 | None:intergenic | 20.0% |
| !! | ATGTATTAACTAGATTTAGA+TGG | + | chr2_3:10846020-10846039 | None:intergenic | 20.0% |
| !!! | TGTAACTTTTAATTTTTCAC+CGG | - | chr2_3:10846069-10846088 | Msa0277960:intron | 20.0% |
| !! | GAAGAAAATTACAAGTAAAT+AGG | + | chr2_3:10846427-10846446 | None:intergenic | 20.0% |
| !! | ACATACACAATTATACATAT+GGG | + | chr2_3:10846729-10846748 | None:intergenic | 20.0% |
| !! | TACATACACAATTATACATA+TGG | + | chr2_3:10846730-10846749 | None:intergenic | 20.0% |
| !! | ATAAAAAGTTCATGTGATAA+GGG | + | chr2_3:10846819-10846838 | None:intergenic | 20.0% |
| !!! | TTCTAAACAGTAAAGTATTA+GGG | + | chr2_3:10846865-10846884 | None:intergenic | 20.0% |
| !!! | TTTCTAAACAGTAAAGTATT+AGG | + | chr2_3:10846866-10846885 | None:intergenic | 20.0% |
| !! | ACTTATCTACTTATTTGATA+TGG | - | chr2_3:10847096-10847115 | Msa0277960:intron | 20.0% |
| !!! | AACAATTTGTTTTTGAGATA+CGG | - | chr2_3:10847329-10847348 | Msa0277960:intron | 20.0% |
| !!! | AGAACTACTTAATTATGTTT+TGG | - | chr2_3:10848055-10848074 | Msa0277960:intron | 20.0% |
| !! | AAGAAATTCAATTCAATTCA+AGG | + | chr2_3:10848441-10848460 | None:intergenic | 20.0% |
| !!! | TTTGATAATATACTCCTTTA+AGG | - | chr2_3:10848531-10848550 | Msa0277960:intron | 20.0% |
| !! | TGACTATCATTTCAATTAAT+TGG | - | chr2_3:10848663-10848682 | Msa0277960:intron | 20.0% |
| !! | AACGTAGTAATATTCAAAAT+TGG | + | chr2_3:10848987-10849006 | None:intergenic | 20.0% |
| !! | AGGAAATAAGTAAAAATAAG+AGG | - | chr2_3:10849076-10849095 | Msa0277960:intron | 20.0% |
| !! | AAATAAGTAAAAATAAGAGG+TGG | - | chr2_3:10849079-10849098 | Msa0277960:intron | 20.0% |
| !! | AAATGAAGGTTATAAATCAA+GGG | + | chr2_3:10849125-10849144 | None:intergenic | 20.0% |
| !! | AAAATGAAGGTTATAAATCA+AGG | + | chr2_3:10849126-10849145 | None:intergenic | 20.0% |
| !! | TAAAAGAAAACATTAATTGG+AGG | - | chr2_3:10849375-10849394 | Msa0277960:intron | 20.0% |
| !! | AATTTACAAGTAATCAAGAT+AGG | + | chr2_3:10850280-10850299 | None:intergenic | 20.0% |
| !! | ATAATAATTAAAGAAAGGGA+AGG | - | chr2_3:10850479-10850498 | Msa0277960:five_prime_UTR | 20.0% |
| !! | AAGCAGATTTGGAAATTTTA+CGG | + | chr2_3:10844396-10844415 | None:intergenic | 25.0% |
| ! | AAGCAATTGAAATTGATTGA+AGG | + | chr2_3:10844568-10844587 | None:intergenic | 25.0% |
| ! | ATTGAATTGAGGAAATTAAG+AGG | + | chr2_3:10844596-10844615 | None:intergenic | 25.0% |
| ! | CATAATCATTAAGCGAATTA+AGG | + | chr2_3:10844636-10844655 | None:intergenic | 25.0% |
| !! | TTAAAATTAGTTTAGCACGA+AGG | + | chr2_3:10844735-10844754 | None:intergenic | 25.0% |
| !! | AAACTAATTTTAAGCGGTTT+AGG | - | chr2_3:10844742-10844761 | Msa0277960:CDS | 25.0% |
| ! | AAAGACTAAAAACAAACCAA+AGG | + | chr2_3:10845119-10845138 | None:intergenic | 25.0% |
| ! | GATTAATATTTACTACCATG+TGG | - | chr2_3:10845339-10845358 | Msa0277960:intron | 25.0% |
| ! | AGAAGGAAAAATTATGTCAA+TGG | + | chr2_3:10845365-10845384 | None:intergenic | 25.0% |
| ! | TATGAAAATATACCACAATC+TGG | - | chr2_3:10845558-10845577 | Msa0277960:intron | 25.0% |
| ! | ATGAAAATATACCACAATCT+GGG | - | chr2_3:10845559-10845578 | Msa0277960:intron | 25.0% |
| ! | CAGAGAGAAAAGAAAAAAAA+AGG | + | chr2_3:10845674-10845693 | None:intergenic | 25.0% |
| ! | AGACAATATAACATGGAATT+TGG | + | chr2_3:10845859-10845878 | None:intergenic | 25.0% |
| !!! | TGATAAGTGTTTTGTTATGT+GGG | - | chr2_3:10845969-10845988 | Msa0277960:intron | 25.0% |
| !!! | CTCATCAGTTTTTAAAACAT+TGG | + | chr2_3:10846500-10846519 | None:intergenic | 25.0% |
| ! | CATAAAAAGTTCATGTGATA+AGG | + | chr2_3:10846820-10846839 | None:intergenic | 25.0% |
| !! | CTTATCACATGAACTTTTTA+TGG | - | chr2_3:10846818-10846837 | Msa0277960:intron | 25.0% |
| ! | TTAAAAGTGACATTAATCTG+AGG | - | chr2_3:10847393-10847412 | Msa0277960:intron | 25.0% |
| !!! | ATTTTAGGGTCTTAAATTGT+TGG | - | chr2_3:10847591-10847610 | Msa0277960:intron | 25.0% |
| ! | ATTATTACTAGAAATGATCC+AGG | - | chr2_3:10847872-10847891 | Msa0277960:intron | 25.0% |
| !!! | CTTTAGGATTACAAATACAA+TGG | - | chr2_3:10848006-10848025 | Msa0277960:intron | 25.0% |
| !!! | AAATACAATGGATTGTGAAT+AGG | - | chr2_3:10848018-10848037 | Msa0277960:intron | 25.0% |
| !!! | AATACAATGGATTGTGAATA+GGG | - | chr2_3:10848019-10848038 | Msa0277960:intron | 25.0% |
| ! | GCAAGCAAAATTATCAATAT+TGG | + | chr2_3:10848393-10848412 | None:intergenic | 25.0% |
| ! | AAATTCAATTCAATTCAAGG+AGG | + | chr2_3:10848438-10848457 | None:intergenic | 25.0% |
| ! | TGAAAATAGAACACTAAACA+AGG | + | chr2_3:10848490-10848509 | None:intergenic | 25.0% |
| ! | TGAAATGATAGTCAACATTT+AGG | + | chr2_3:10848657-10848676 | None:intergenic | 25.0% |
| ! | ATCATTTCAATTAATTGGAG+AGG | - | chr2_3:10848668-10848687 | Msa0277960:intron | 25.0% |
| ! | GCTAAAAATAAATGGATCTA+AGG | + | chr2_3:10848838-10848857 | None:intergenic | 25.0% |
| ! | ATTTCGTCATGTAGAAATAA+GGG | + | chr2_3:10848880-10848899 | None:intergenic | 25.0% |
| ! | AATTTCGTCATGTAGAAATA+AGG | + | chr2_3:10848881-10848900 | None:intergenic | 25.0% |
| ! | TGGAAATCAAGTAGAAATAA+GGG | + | chr2_3:10848967-10848986 | None:intergenic | 25.0% |
| ! | TTGGAAATCAAGTAGAAATA+AGG | + | chr2_3:10848968-10848987 | None:intergenic | 25.0% |
| !!! | TGGTATTTTTGTGACTAAAT+AGG | - | chr2_3:10849099-10849118 | Msa0277960:intron | 25.0% |
| !!! | TTTTTTTCAAATGCAAACAG+TGG | - | chr2_3:10849172-10849191 | Msa0277960:intron | 25.0% |
| ! | GGTTATTAATGAGTTTAATG+AGG | - | chr2_3:10849202-10849221 | Msa0277960:CDS | 25.0% |
| !! | ACAAATTTAGGAGTATGTTA+CGG | - | chr2_3:10849399-10849418 | Msa0277960:CDS | 25.0% |
| ! | AATAGTTATGAGATAGTTGT+AGG | + | chr2_3:10849467-10849486 | None:intergenic | 25.0% |
| ! | GATAAATTTGTCCTTTGTAT+AGG | - | chr2_3:10849511-10849530 | Msa0277960:CDS | 25.0% |
| ! | AATCAAGATAGGTATAGTTT+CGG | + | chr2_3:10850269-10850288 | None:intergenic | 25.0% |
| !! | AAATACTAGACAAAAGTACA+TGG | + | chr2_3:10850326-10850345 | None:intergenic | 25.0% |
| !! | TGTACTTTTGTCTAGTATTT+AGG | - | chr2_3:10850326-10850345 | Msa0277960:intron | 25.0% |
| ! | TGACAGTATTTATATTACCA+AGG | - | chr2_3:10850362-10850381 | Msa0277960:intron | 25.0% |
| ! | GACAGTATTTATATTACCAA+GGG | - | chr2_3:10850363-10850382 | Msa0277960:intron | 25.0% |
| ! | TCATCATATAGTGTAAAACA+TGG | - | chr2_3:10850418-10850437 | Msa0277960:intron | 25.0% |
| !! | ATCTTGCTTATACATGTTTT+TGG | - | chr2_3:10850516-10850535 | Msa0277960:five_prime_UTR | 25.0% |
| ! | AGATTGATGAGTTGAGAAAA+TGG | + | chr2_3:10844531-10844550 | None:intergenic | 30.0% |
| !!! | GATTTAGGTTTTTAGTTTCG+AGG | - | chr2_3:10844696-10844715 | Msa0277960:CDS | 30.0% |
| ! | CGTGCTAAACTAATTTTAAG+CGG | - | chr2_3:10844736-10844755 | Msa0277960:CDS | 30.0% |
| TATTATTAGTATGCTGAGAG+TGG | - | chr2_3:10844847-10844866 | Msa0277960:CDS | 30.0% | |
| TGAAATTCACAGATATCAAG+TGG | - | chr2_3:10844934-10844953 | Msa0277960:CDS | 30.0% | |
| ! | TGTTCAAGATGATAATGAGA+TGG | - | chr2_3:10845007-10845026 | Msa0277960:CDS | 30.0% |
| ! | GATGATGATATGTATTTTCG+TGG | - | chr2_3:10845038-10845057 | Msa0277960:CDS | 30.0% |
| TCGAATTCAAACTGTAACAA+AGG | + | chr2_3:10845156-10845175 | None:intergenic | 30.0% | |
| ! | TCCGTTTGAAAAACTTTTGA+GGG | - | chr2_3:10845219-10845238 | Msa0277960:CDS | 30.0% |
| !! | ACCCTCAAAAGTTTTTCAAA+CGG | + | chr2_3:10845223-10845242 | None:intergenic | 30.0% |
| ! | TATTCGGTTTTCCTGTAATA+AGG | + | chr2_3:10845421-10845440 | None:intergenic | 30.0% |
| TGAAAATATACCACAATCTG+GGG | - | chr2_3:10845560-10845579 | Msa0277960:intron | 30.0% | |
| AGTGCAAAGTAACACAAAAA+GGG | - | chr2_3:10845703-10845722 | Msa0277960:intron | 30.0% | |
| !! | ATGAAGTATTGTTGACTTCA+CGG | + | chr2_3:10845763-10845782 | None:intergenic | 30.0% |
| CATCTTCAGACAATATAACA+TGG | + | chr2_3:10845866-10845885 | None:intergenic | 30.0% | |
| TCACAAGAGACAATATAACA+TGG | + | chr2_3:10845914-10845933 | None:intergenic | 30.0% | |
| !! | CTGATAAGTGTTTTGTTATG+TGG | - | chr2_3:10845968-10845987 | Msa0277960:intron | 30.0% |
| ! | TTGTTGTTAGAGTATCACTT+AGG | - | chr2_3:10846250-10846269 | Msa0277960:intron | 30.0% |
| ! | ATCTTGTTTGAAACTTAACC+TGG | + | chr2_3:10846527-10846546 | None:intergenic | 30.0% |
| !! | AAAGTATTAGGGTTTGTTAC+AGG | + | chr2_3:10846854-10846873 | None:intergenic | 30.0% |
| CAATTTGTGCAACAAAAGTA+GGG | + | chr2_3:10847158-10847177 | None:intergenic | 30.0% | |
| !!! | TTCACCTTTGTTTTTGAGAT+AGG | - | chr2_3:10847246-10847265 | Msa0277960:CDS | 30.0% |
| !!! | TCACCTTTGTTTTTGAGATA+GGG | - | chr2_3:10847247-10847266 | Msa0277960:CDS | 30.0% |
| AGGAAATAAAAGAAAGACCT+GGG | + | chr2_3:10847547-10847566 | None:intergenic | 30.0% | |
| AAGGAAATAAAAGAAAGACC+TGG | + | chr2_3:10847548-10847567 | None:intergenic | 30.0% | |
| GAAAAAAAGAAGGGGAAAAA+AGG | + | chr2_3:10847567-10847586 | None:intergenic | 30.0% | |
| ! | TAGAAATGATCCAGGATTTT+TGG | - | chr2_3:10847880-10847899 | Msa0277960:intron | 30.0% |
| TTTGAATTTGCCAAAAATCC+TGG | + | chr2_3:10847893-10847912 | None:intergenic | 30.0% | |
| !! | CTTTAGGATTACAGATACAA+TGG | - | chr2_3:10847940-10847959 | Msa0277960:intron | 30.0% |
| ATTGTGAATAGGGAAATGAA+AGG | - | chr2_3:10848029-10848048 | Msa0277960:intron | 30.0% | |
| TTGTGAATAGGGAAATGAAA+GGG | - | chr2_3:10848030-10848049 | Msa0277960:intron | 30.0% | |
| AGAAAAGAAACTGAAGAGAA+AGG | - | chr2_3:10848263-10848282 | Msa0277960:intron | 30.0% | |
| ! | TCTGATGAATTTTCAGATGT+TGG | - | chr2_3:10848462-10848481 | Msa0277960:intron | 30.0% |
| ATTTCAATTAATTGGAGAGG+AGG | - | chr2_3:10848671-10848690 | Msa0277960:intron | 30.0% | |
| TTTCAATTAATTGGAGAGGA+GGG | - | chr2_3:10848672-10848691 | Msa0277960:intron | 30.0% | |
| ! | AACTTAGAAGTACAGAGTTA+TGG | - | chr2_3:10848730-10848749 | Msa0277960:intron | 30.0% |
| TTTCTACATGACGAAATTCT+TGG | - | chr2_3:10848883-10848902 | Msa0277960:intron | 30.0% | |
| TTCTACATGACGAAATTCTT+GGG | - | chr2_3:10848884-10848903 | Msa0277960:intron | 30.0% | |
| GGAAATCAAGTAGAAATAAG+GGG | + | chr2_3:10848966-10848985 | None:intergenic | 30.0% | |
| TTTAATGAGGAATGACTGAA+AGG | - | chr2_3:10849215-10849234 | Msa0277960:CDS | 30.0% | |
| TTCGAGTAATGTTATGAGTA+AGG | - | chr2_3:10849275-10849294 | Msa0277960:intron | 30.0% | |
| TATGAGTAAGGAAGAAATGA+TGG | - | chr2_3:10849287-10849306 | Msa0277960:intron | 30.0% | |
| ATGAGTAAGGAAGAAATGAT+GGG | - | chr2_3:10849288-10849307 | Msa0277960:intron | 30.0% | |
| ! | TTAATTGGAGGCACAAATTT+AGG | - | chr2_3:10849387-10849406 | Msa0277960:CDS | 30.0% |
| ATACTTCATTAAGCCCTAAT+GGG | - | chr2_3:10849692-10849711 | Msa0277960:intron | 30.0% | |
| ! | TTACAAGTTGTTTCCCATTA+GGG | + | chr2_3:10849708-10849727 | None:intergenic | 30.0% |
| ! | ATTACAAGTTGTTTCCCATT+AGG | + | chr2_3:10849709-10849728 | None:intergenic | 30.0% |
| CTTGGATTATTCATTTGCAT+CGG | - | chr2_3:10849910-10849929 | Msa0277960:CDS | 30.0% | |
| ATAATTAAAGAAAGGGAAGG+AGG | - | chr2_3:10850482-10850501 | Msa0277960:five_prime_UTR | 30.0% | |
| TAATTAAAGAAAGGGAAGGA+GGG | - | chr2_3:10850483-10850502 | Msa0277960:five_prime_UTR | 30.0% | |
| !!! | TGCTTATACATGTTTTTGGT+TGG | - | chr2_3:10850520-10850539 | Msa0277960:five_prime_UTR | 30.0% |
| ! | CGCAAATTTTGTTCGGATTT+AGG | - | chr2_3:10844681-10844700 | Msa0277960:CDS | 35.0% |
| !!! | TTAGGTTTTTAGTTTCGAGG+AGG | - | chr2_3:10844699-10844718 | Msa0277960:CDS | 35.0% |
| ! | GATGATATGTATTTTCGTGG+CGG | - | chr2_3:10845041-10845060 | Msa0277960:CDS | 35.0% |
| ! | ATGATATGTATTTTCGTGGC+GGG | - | chr2_3:10845042-10845061 | Msa0277960:CDS | 35.0% |
| ! | CTCCGTTTGAAAAACTTTTG+AGG | - | chr2_3:10845218-10845237 | Msa0277960:CDS | 35.0% |
| AAATTATGTCAATGGCCACA+TGG | + | chr2_3:10845357-10845376 | None:intergenic | 35.0% | |
| AGGATATTCAAGGTATACCT+TGG | - | chr2_3:10845475-10845494 | Msa0277960:intron | 35.0% | |
| GGATATTCAAGGTATACCTT+GGG | - | chr2_3:10845476-10845495 | Msa0277960:intron | 35.0% | |
| GAGTGCAAAGTAACACAAAA+AGG | - | chr2_3:10845702-10845721 | Msa0277960:intron | 35.0% | |
| GTGCAAAGTAACACAAAAAG+GGG | - | chr2_3:10845704-10845723 | Msa0277960:intron | 35.0% | |
| TGCAAAGTAACACAAAAAGG+GGG | - | chr2_3:10845705-10845724 | Msa0277960:intron | 35.0% | |
| CACATTACTCAATTGTTCAC+TGG | - | chr2_3:10846144-10846163 | Msa0277960:intron | 35.0% | |
| ! | TCTGAAGTTCTCAATGTATC+AGG | - | chr2_3:10846188-10846207 | Msa0277960:intron | 35.0% |
| CTGAAGTTCTCAATGTATCA+GGG | - | chr2_3:10846189-10846208 | Msa0277960:intron | 35.0% | |
| GCACAAATTATTACCTCACA+TGG | + | chr2_3:10846224-10846243 | None:intergenic | 35.0% | |
| TCAGACACAAATTAGTACAC+TGG | - | chr2_3:10846340-10846359 | Msa0277960:intron | 35.0% | |
| !! | GTGATAACTTGTTGATTGCT+GGG | - | chr2_3:10846369-10846388 | Msa0277960:intron | 35.0% |
| !! | TGATAACTTGTTGATTGCTG+GGG | - | chr2_3:10846370-10846389 | Msa0277960:intron | 35.0% |
| !!! | CTGAAAGTACTGTTACGTTT+TGG | - | chr2_3:10846448-10846467 | Msa0277960:intron | 35.0% |
| ! | TTGTTTGAAACTTAACCTGG+AGG | + | chr2_3:10846524-10846543 | None:intergenic | 35.0% |
| ! | CACATGAACTTTTTATGGAC+CGG | - | chr2_3:10846823-10846842 | Msa0277960:intron | 35.0% |
| ! | ACATGAACTTTTTATGGACC+GGG | - | chr2_3:10846824-10846843 | Msa0277960:intron | 35.0% |
| !! | TATTAGGGTTTGTTACAGGT+GGG | + | chr2_3:10846850-10846869 | None:intergenic | 35.0% |
| GCAAAAAGAAAGATGCAATG+AGG | + | chr2_3:10846934-10846953 | None:intergenic | 35.0% | |
| TTAGTCGTTTGTGATTGTGT+TGG | + | chr2_3:10846968-10846987 | None:intergenic | 35.0% | |
| CCAATTTGTGCAACAAAAGT+AGG | + | chr2_3:10847159-10847178 | None:intergenic | 35.0% | |
| !! | CCTACTTTTGTTGCACAAAT+TGG | - | chr2_3:10847156-10847175 | Msa0277960:intron | 35.0% |
| CAACCCTATCTCAAAAACAA+AGG | + | chr2_3:10847253-10847272 | None:intergenic | 35.0% | |
| ACAATCAATTCATCTGTCAG+TGG | - | chr2_3:10847664-10847683 | Msa0277960:intron | 35.0% | |
| TTCATGGCTTCAAACAATGA+TGG | - | chr2_3:10847697-10847716 | Msa0277960:intron | 35.0% | |
| !! | AAACAATGATGGTGGAATCA+GGG | - | chr2_3:10847708-10847727 | Msa0277960:intron | 35.0% |
| GTAGAATGGCTTACATTTAC+TGG | + | chr2_3:10847784-10847803 | None:intergenic | 35.0% | |
| GAAATGTAAGCCATTCTACT+TGG | - | chr2_3:10847820-10847839 | Msa0277960:intron | 35.0% | |
| !! | AGATACAATGGATTGAGAAG+AGG | - | chr2_3:10847952-10847971 | Msa0277960:intron | 35.0% |
| !! | GATACAATGGATTGAGAAGA+GGG | - | chr2_3:10847953-10847972 | Msa0277960:intron | 35.0% |
| TTGAGAAGAGGGAAAGTAAA+TGG | - | chr2_3:10847964-10847983 | Msa0277960:intron | 35.0% | |
| ! | AGAGGGAAAGTAAATGGATT+TGG | - | chr2_3:10847970-10847989 | Msa0277960:intron | 35.0% |
| ! | CAATATTCTGTCTAGCGTTT+TGG | - | chr2_3:10848163-10848182 | Msa0277960:intron | 35.0% |
| GTGGGATAAAAGATTTGAGA+TGG | - | chr2_3:10849332-10849351 | Msa0277960:intron | 35.0% | |
| TAAGAAGCTCTCCTATACAA+AGG | + | chr2_3:10849525-10849544 | None:intergenic | 35.0% | |
| CATACTTCATTAAGCCCTAA+TGG | - | chr2_3:10849691-10849710 | Msa0277960:intron | 35.0% | |
| GGGAAACAACTTGTAATTGT+TGG | - | chr2_3:10849712-10849731 | Msa0277960:intron | 35.0% | |
| ATTAGAATGAGTCAAGTGTG+TGG | - | chr2_3:10849815-10849834 | Msa0277960:intron | 35.0% | |
| TTAGAATGAGTCAAGTGTGT+GGG | - | chr2_3:10849816-10849835 | Msa0277960:intron | 35.0% | |
| ! | ATTATTCATTTGCATCGGCA+TGG | - | chr2_3:10849915-10849934 | Msa0277960:CDS | 35.0% |
| !! | ATGGTTTCATTTTTGCCACT+GGG | - | chr2_3:10849945-10849964 | Msa0277960:CDS | 35.0% |
| ! | AAATGCGGCATGTTTTATCT+TGG | + | chr2_3:10849973-10849992 | None:intergenic | 35.0% |
| AAGATAAAACATGCCGCATT+TGG | - | chr2_3:10849972-10849991 | Msa0277960:CDS | 35.0% | |
| AGATAAAACATGCCGCATTT+GGG | - | chr2_3:10849973-10849992 | Msa0277960:CDS | 35.0% | |
| ! | AAAGTCTGTTGCTGTTCTTA+AGG | - | chr2_3:10850012-10850031 | Msa0277960:five_prime_UTR | 35.0% |
| ! | AAGTCTGTTGCTGTTCTTAA+GGG | - | chr2_3:10850013-10850032 | Msa0277960:five_prime_UTR | 35.0% |
| TGCAAAGCAAGGATTTGAAA+AGG | - | chr2_3:10850125-10850144 | Msa0277960:intron | 35.0% | |
| !!! | GAGCAAGAGATCGATTTTTT+TGG | - | chr2_3:10850147-10850166 | Msa0277960:intron | 35.0% |
| !!! | AGAGATCGATTTTTTTGGAG+AGG | - | chr2_3:10850152-10850171 | Msa0277960:intron | 35.0% |
| !!! | AGTCGCTTTTTATTGGTGTA+TGG | - | chr2_3:10850205-10850224 | Msa0277960:intron | 35.0% |
| !!! | GTCGCTTTTTATTGGTGTAT+GGG | - | chr2_3:10850206-10850225 | Msa0277960:intron | 35.0% |
| TTTCTTCTTTCTACTTCCCT+TGG | + | chr2_3:10850382-10850401 | None:intergenic | 35.0% | |
| AAGGGAAGTAGAAAGAAGAA+AGG | - | chr2_3:10850381-10850400 | Msa0277960:intron | 35.0% | |
| ATAGTGTAAAACATGGCTTG+AGG | - | chr2_3:10850425-10850444 | Msa0277960:intron | 35.0% | |
| GAATTGCGATGAAGCAGATT+TGG | + | chr2_3:10844407-10844426 | None:intergenic | 40.0% | |
| AGAACATGGCTCAATACCAT+GGG | - | chr2_3:10844970-10844989 | Msa0277960:CDS | 40.0% | |
| TCAATACCATGGGGATGAAA+TGG | - | chr2_3:10844980-10844999 | Msa0277960:CDS | 40.0% | |
| ! | AGATGATAATGAGATGGCTG+AGG | - | chr2_3:10845013-10845032 | Msa0277960:CDS | 40.0% |
| TGGTGAATCTGATACTGATG+AGG | - | chr2_3:10845073-10845092 | Msa0277960:CDS | 40.0% | |
| CGACGATGAATATGATCCTT+TGG | - | chr2_3:10845100-10845119 | Msa0277960:intron | 40.0% | |
| !!! | TCCTTCTGCTTGCACTTTTT+TGG | - | chr2_3:10845378-10845397 | Msa0277960:intron | 40.0% |
| !!! | CCTTCTGCTTGCACTTTTTT+GGG | - | chr2_3:10845379-10845398 | Msa0277960:intron | 40.0% |
| !!! | CTTCTGCTTGCACTTTTTTG+GGG | - | chr2_3:10845380-10845399 | Msa0277960:intron | 40.0% |
| GGCTATGGATTCCTTATTAC+AGG | - | chr2_3:10845407-10845426 | Msa0277960:intron | 40.0% | |
| CTGCAGTGGTATCTGTTATT+CGG | + | chr2_3:10845437-10845456 | None:intergenic | 40.0% | |
| TTCAAGGTATACCTTGGGAT+AGG | - | chr2_3:10845481-10845500 | Msa0277960:intron | 40.0% | |
| ! | TTCTTTTCTCTCTGATCCAC+AGG | - | chr2_3:10845680-10845699 | Msa0277960:intron | 40.0% |
| GGGGATTGTATTACGATTTC+TGG | - | chr2_3:10845724-10845743 | Msa0277960:intron | 40.0% | |
| AAGATGCGACAAGAGTTGTT+TGG | - | chr2_3:10845832-10845851 | Msa0277960:intron | 40.0% | |
| AAGATGCGACAAGAGTTGTT+TGG | - | chr2_3:10845832-10845851 | Msa0277960:intron | 40.0% | |
| AAACTAAGTTTCTCAGCTGC+CGG | + | chr2_3:10846091-10846110 | None:intergenic | 40.0% | |
| ! | GTGTTGCTAACAGAAACATC+CGG | - | chr2_3:10846295-10846314 | Msa0277960:intron | 40.0% |
| TGTTGCTAACAGAAACATCC+GGG | - | chr2_3:10846296-10846315 | Msa0277960:intron | 40.0% | |
| !! | CGTGATAACTTGTTGATTGC+TGG | - | chr2_3:10846368-10846387 | Msa0277960:intron | 40.0% |
| !! | GATAACTTGTTGATTGCTGG+GGG | - | chr2_3:10846371-10846390 | Msa0277960:intron | 40.0% |
| TCAAGGAGAGCTTATTTGCA+AGG | - | chr2_3:10846397-10846416 | Msa0277960:intron | 40.0% | |
| TAAAAACTGATGAGACCTCC+AGG | - | chr2_3:10846506-10846525 | Msa0277960:intron | 40.0% | |
| GCGATTGAAGACTTACGAAT+TGG | + | chr2_3:10846692-10846711 | None:intergenic | 40.0% | |
| !! | GTATTAGGGTTTGTTACAGG+TGG | + | chr2_3:10846851-10846870 | None:intergenic | 40.0% |
| GATTGTGTTGGATGAAGAAG+CGG | + | chr2_3:10846956-10846975 | None:intergenic | 40.0% | |
| TTGTTCTCGAACTACGTATG+AGG | - | chr2_3:10847483-10847502 | Msa0277960:CDS | 40.0% | |
| TTGAGATTTATGAGCATCCC+AGG | - | chr2_3:10847527-10847546 | Msa0277960:intron | 40.0% | |
| AGGGTCTTAAATTGTTGGCA+TGG | - | chr2_3:10847596-10847615 | Msa0277960:intron | 40.0% | |
| TAGTATGCAGTCATCCTTGA+GGG | + | chr2_3:10847644-10847663 | None:intergenic | 40.0% | |
| TTAGTATGCAGTCATCCTTG+AGG | + | chr2_3:10847645-10847664 | None:intergenic | 40.0% | |
| ATGGCTTCAAACAATGATGG+TGG | - | chr2_3:10847700-10847719 | Msa0277960:intron | 40.0% | |
| !! | CAAACAATGATGGTGGAATC+AGG | - | chr2_3:10847707-10847726 | Msa0277960:intron | 40.0% |
| TGGAATCAGGGACTTTGATA+TGG | - | chr2_3:10847720-10847739 | Msa0277960:intron | 40.0% | |
| CCACAGAAAGTCAAGTAGAA+TGG | + | chr2_3:10847798-10847817 | None:intergenic | 40.0% | |
| CCATTCTACTTGACTTTCTG+TGG | - | chr2_3:10847795-10847814 | Msa0277960:intron | 40.0% | |
| TAGCTAGTTCACAGTGCTTT+AGG | - | chr2_3:10847924-10847943 | Msa0277960:intron | 40.0% | |
| ! | TGGCTAGTTCACAATGCTTT+AGG | - | chr2_3:10847990-10848009 | Msa0277960:intron | 40.0% |
| !! | TACTCCTTTAAGGCACTAAC+TGG | - | chr2_3:10848541-10848560 | Msa0277960:intron | 40.0% |
| AACAGATTCCAGCTACAAAC+TGG | + | chr2_3:10848606-10848625 | None:intergenic | 40.0% | |
| ! | GTCAGTACGTGATTTTTACG+TGG | + | chr2_3:10848765-10848784 | None:intergenic | 40.0% |
| ACGAAATTCTTGGGCAAGTT+TGG | - | chr2_3:10848893-10848912 | Msa0277960:intron | 40.0% | |
| GACGCAAACGTGAAAAATGA+AGG | + | chr2_3:10849139-10849158 | None:intergenic | 40.0% | |
| AAATGCAAACAGTGGCATCA+TGG | - | chr2_3:10849180-10849199 | Msa0277960:intron | 40.0% | |
| AATGCAAACAGTGGCATCAT+GGG | - | chr2_3:10849181-10849200 | Msa0277960:intron | 40.0% | |
| GGTCATACACATGAATGGTT+TGG | + | chr2_3:10849247-10849266 | None:intergenic | 40.0% | |
| TCTCTGGTCATACACATGAA+TGG | + | chr2_3:10849252-10849271 | None:intergenic | 40.0% | |
| AACATTACTCGAAAGCTCTC+TGG | + | chr2_3:10849268-10849287 | None:intergenic | 40.0% | |
| ! | AGTAAGGAAGAAATGATGGG+AGG | - | chr2_3:10849291-10849310 | Msa0277960:intron | 40.0% |
| ! | GTAAGGAAGAAATGATGGGA+GGG | - | chr2_3:10849292-10849311 | Msa0277960:intron | 40.0% |
| AATTTGCATACACAAGCCTC+TGG | + | chr2_3:10849434-10849453 | None:intergenic | 40.0% | |
| TAGACTATTGCACCTCTATG+CGG | - | chr2_3:10849884-10849903 | Msa0277960:CDS | 40.0% | |
| GTGGCAAAAATGAAACCATC+AGG | + | chr2_3:10849944-10849963 | None:intergenic | 40.0% | |
| !! | GATGGTTTCATTTTTGCCAC+TGG | - | chr2_3:10849944-10849963 | Msa0277960:CDS | 40.0% |
| ! | TGTTTTATCTTGGTTCCCAG+TGG | + | chr2_3:10849963-10849982 | None:intergenic | 40.0% |
| ! | AGTCTGTTGCTGTTCTTAAG+GGG | - | chr2_3:10850014-10850033 | Msa0277960:five_prime_UTR | 40.0% |
| TCAATACGCTTCACATCTGA+TGG | - | chr2_3:10850054-10850073 | Msa0277960:intron | 40.0% | |
| CAATACGCTTCACATCTGAT+GGG | - | chr2_3:10850055-10850074 | Msa0277960:intron | 40.0% | |
| CATGTCTATGATGCAAAGCA+AGG | - | chr2_3:10850114-10850133 | Msa0277960:intron | 40.0% | |
| !!! | GATTTTTTTGGAGAGGTCTC+AGG | - | chr2_3:10850159-10850178 | Msa0277960:intron | 40.0% |
| TAAAAAGCGACTCTGTGTCA+GGG | + | chr2_3:10850197-10850216 | None:intergenic | 40.0% | |
| ATAAAAAGCGACTCTGTGTC+AGG | + | chr2_3:10850198-10850217 | None:intergenic | 40.0% | |
| !!! | GACACAGAGTCGCTTTTTAT+TGG | - | chr2_3:10850198-10850217 | Msa0277960:intron | 40.0% |
| GAACTGAAGAAGACTTCCAT+AGG | + | chr2_3:10850238-10850257 | None:intergenic | 40.0% | |
| AGAAGAAAGGTGAACTGACA+TGG | - | chr2_3:10850394-10850413 | Msa0277960:intron | 40.0% | |
| AAAACATGGCTTGAGGATGT+TGG | - | chr2_3:10850432-10850451 | Msa0277960:intron | 40.0% | |
| AAACATGGCTTGAGGATGTT+GGG | - | chr2_3:10850433-10850452 | Msa0277960:intron | 40.0% | |
| ! | TGTTCTGGATCTCAGGGATA+AGG | + | chr2_3:10844453-10844472 | None:intergenic | 45.0% |
| ! | AGGGTTTGTTCTGGATCTCA+GGG | + | chr2_3:10844459-10844478 | None:intergenic | 45.0% |
| ! | TAGGGTTTGTTCTGGATCTC+AGG | + | chr2_3:10844460-10844479 | None:intergenic | 45.0% |
| ! | CTTGAGGTTAGGGTTTGTTC+TGG | + | chr2_3:10844468-10844487 | None:intergenic | 45.0% |
| CAGAACAAACCCTAACCTCA+AGG | - | chr2_3:10844466-10844485 | Msa0277960:three_prime_UTR | 45.0% | |
| TGGTGACCTGATTCTGTGTT+GGG | + | chr2_3:10844511-10844530 | None:intergenic | 45.0% | |
| ATGGTGACCTGATTCTGTGT+TGG | + | chr2_3:10844512-10844531 | None:intergenic | 45.0% | |
| !!! | GGTTTTTAGTTTCGAGGAGG+TGG | - | chr2_3:10844702-10844721 | Msa0277960:CDS | 45.0% |
| ! | TGGTATTGAGCCATGTTCTG+CGG | + | chr2_3:10844969-10844988 | None:intergenic | 45.0% |
| CAGAACATGGCTCAATACCA+TGG | - | chr2_3:10844969-10844988 | Msa0277960:CDS | 45.0% | |
| GAACATGGCTCAATACCATG+GGG | - | chr2_3:10844971-10844990 | Msa0277960:CDS | 45.0% | |
| CATACTCCATTTCATCCCCA+TGG | + | chr2_3:10844989-10845008 | None:intergenic | 45.0% | |
| ! | CCCAAAAAAGTGCAAGCAGA+AGG | + | chr2_3:10845382-10845401 | None:intergenic | 45.0% |
| !!! | TGCTTGCACTTTTTTGGGGT+GGG | - | chr2_3:10845384-10845403 | Msa0277960:intron | 45.0% |
| AGGAGGGGAAAGGATATTCA+AGG | - | chr2_3:10845465-10845484 | Msa0277960:intron | 45.0% | |
| ATCTCGTCTTGCTTAGTGCT+TGG | - | chr2_3:10845605-10845624 | Msa0277960:intron | 45.0% | |
| ! | GCTTGGAGGCATATGAGTAA+TGG | - | chr2_3:10845622-10845641 | Msa0277960:intron | 45.0% |
| !! | TGTGTTACTTTGCACTCCTG+TGG | + | chr2_3:10845699-10845718 | None:intergenic | 45.0% |
| GGCAGCTGAGAAACTTAGTT+TGG | - | chr2_3:10846090-10846109 | Msa0277960:intron | 45.0% | |
| TCTGAGTAAAACCCTCCAAG+AGG | + | chr2_3:10846325-10846344 | None:intergenic | 45.0% | |
| ! | TTGATTGCTGGGGGTTTTCA+AGG | - | chr2_3:10846380-10846399 | Msa0277960:intron | 45.0% |
| AATGAGGAACATTTGCTCGC+TGG | + | chr2_3:10846918-10846937 | None:intergenic | 45.0% | |
| AACGACTAAGTGAAGATCCG+CGG | - | chr2_3:10846979-10846998 | Msa0277960:intron | 45.0% | |
| TCAGTCAATCTTCGCTACAC+CGG | + | chr2_3:10847014-10847033 | None:intergenic | 45.0% | |
| TCGAGAACAAAAGCTAACCC+CGG | + | chr2_3:10847473-10847492 | None:intergenic | 45.0% | |
| ATCACTAGTCACAACCCTCA+AGG | - | chr2_3:10847627-10847646 | Msa0277960:intron | 45.0% | |
| CAGTGGAGCTGTACATTTCA+TGG | - | chr2_3:10847681-10847700 | Msa0277960:intron | 45.0% | |
| ! | CGAAGCATTCATGCTTTCCT+TGG | - | chr2_3:10847758-10847777 | Msa0277960:intron | 45.0% |
| TGGCTTACATTTACTGGCCA+AGG | + | chr2_3:10847778-10847797 | None:intergenic | 45.0% | |
| CCACAGAAAGCCAAGTAGAA+TGG | + | chr2_3:10847833-10847852 | None:intergenic | 45.0% | |
| ! | CCATTCTACTTGGCTTTCTG+TGG | - | chr2_3:10847830-10847849 | Msa0277960:intron | 45.0% |
| !!! | GCGTTTTGGCTGTTGCATTA+TGG | - | chr2_3:10848177-10848196 | Msa0277960:intron | 45.0% |
| GTAGCCAGTTAGTGCCTTAA+AGG | + | chr2_3:10848548-10848567 | None:intergenic | 45.0% | |
| ACGAAAAGTTATCCCCTGAC+AGG | + | chr2_3:10848570-10848589 | None:intergenic | 45.0% | |
| CCAGCTACAAACTGGTGAAA+AGG | + | chr2_3:10848598-10848617 | None:intergenic | 45.0% | |
| ! | CCTTTTCACCAGTTTGTAGC+TGG | - | chr2_3:10848595-10848614 | Msa0277960:CDS | 45.0% |
| AATTGGAGAGGAGGGAAAAG+TGG | - | chr2_3:10848680-10848699 | Msa0277960:intron | 45.0% | |
| ATTGGAGAGGAGGGAAAAGT+GGG | - | chr2_3:10848681-10848700 | Msa0277960:intron | 45.0% | |
| GAAATTGAGAATCCCTCAGC+TGG | - | chr2_3:10848788-10848807 | Msa0277960:CDS | 45.0% | |
| TGAAAAACGACACCAGCTGA+GGG | + | chr2_3:10848803-10848822 | None:intergenic | 45.0% | |
| ATGAAAAACGACACCAGCTG+AGG | + | chr2_3:10848804-10848823 | None:intergenic | 45.0% | |
| GTGCAGTAGAATGTACAGGT+GGG | - | chr2_3:10849314-10849333 | Msa0277960:intron | 45.0% | |
| ATTGTTGGAGACAACCCAGA+TGG | - | chr2_3:10849727-10849746 | Msa0277960:intron | 45.0% | |
| AGACAACCCAGATGGTTTAC+TGG | - | chr2_3:10849735-10849754 | Msa0277960:intron | 45.0% | |
| CATCCACCAGTAAACCATCT+GGG | + | chr2_3:10849744-10849763 | None:intergenic | 45.0% | |
| ! | TTACTGGTGGATGCTCAAAC+TGG | - | chr2_3:10849751-10849770 | Msa0277960:intron | 45.0% |
| TAATCCAAGTGTCCGCATAG+AGG | + | chr2_3:10849899-10849918 | None:intergenic | 45.0% | |
| GATTCCGAACATCCCAAATG+CGG | + | chr2_3:10849988-10850007 | None:intergenic | 45.0% | |
| TGCTGTTCTTAAGGGGAACT+TGG | - | chr2_3:10850021-10850040 | Msa0277960:intron | 45.0% | |
| TAGACATGCACAAAGTCAGC+TGG | + | chr2_3:10850102-10850121 | None:intergenic | 45.0% | |
| AACATGGCTTGAGGATGTTG+GGG | - | chr2_3:10850434-10850453 | Msa0277960:intron | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTTGT+GGG | - | chr2_3:10845183-10845202 | Msa0277960:intron | 5.0% |
| !! | ATAAAAAATAAAATAAAAGA+GGG | + | chr2_3:10848136-10848155 | None:intergenic | 5.0% |
| !! | AATAAAAAATAAAATAAAAG+AGG | + | chr2_3:10848137-10848156 | None:intergenic | 5.0% |
| !! | TTAAATAATAATTAAAGAAA+GGG | - | chr2_3:10850475-10850494 | Msa0277960:five_prime_UTR | 5.0% |
| ! | TCTGTGTTGGGGATTGGTGA+AGG | + | chr2_3:10844499-10844518 | None:intergenic | 50.0% |
| CCTGATTCTGTGTTGGGGAT+TGG | + | chr2_3:10844505-10844524 | None:intergenic | 50.0% | |
| CCAATCCCCAACACAGAATC+AGG | - | chr2_3:10844502-10844521 | Msa0277960:three_prime_UTR | 50.0% | |
| GGTGACCTGATTCTGTGTTG+GGG | + | chr2_3:10844510-10844529 | None:intergenic | 50.0% | |
| GTGAACTCTACCGCAGAACA+TGG | - | chr2_3:10844956-10844975 | Msa0277960:CDS | 50.0% | |
| !!! | CTGCTTGCACTTTTTTGGGG+TGG | - | chr2_3:10845383-10845402 | Msa0277960:intron | 50.0% |
| !!! | GCTTGCACTTTTTTGGGGTG+GGG | - | chr2_3:10845385-10845404 | Msa0277960:intron | 50.0% |
| !!! | CTTGCACTTTTTTGGGGTGG+GGG | - | chr2_3:10845386-10845405 | Msa0277960:intron | 50.0% |
| ATACCACTGCAGCTGAAGCT+AGG | - | chr2_3:10845445-10845464 | Msa0277960:intron | 50.0% | |
| GTAATGCTCAGCCTATCCCA+AGG | + | chr2_3:10845495-10845514 | None:intergenic | 50.0% | |
| TCTGACAGTTCCCCAGATTG+TGG | + | chr2_3:10845573-10845592 | None:intergenic | 50.0% | |
| ATCTGGGGAACTGTCAGAGA+AGG | - | chr2_3:10845575-10845594 | Msa0277960:intron | 50.0% | |
| TCGTCTTGCTTAGTGCTTGG+AGG | - | chr2_3:10845608-10845627 | Msa0277960:intron | 50.0% | |
| TTGCAGTACTTAGACCGACC+CGG | - | chr2_3:10847451-10847470 | Msa0277960:CDS | 50.0% | |
| AACAAAAGCTAACCCCGGGT+CGG | + | chr2_3:10847468-10847487 | None:intergenic | 50.0% | |
| CGAGAACAAAAGCTAACCCC+GGG | + | chr2_3:10847472-10847491 | None:intergenic | 50.0% | |
| CACTAACTGGCTACCTGTCA+GGG | - | chr2_3:10848554-10848573 | Msa0277960:intron | 50.0% | |
| ACTAACTGGCTACCTGTCAG+GGG | - | chr2_3:10848555-10848574 | Msa0277960:intron | 50.0% | |
| ! | GAGGGTGCAGTAGAATGTAC+AGG | - | chr2_3:10849310-10849329 | Msa0277960:intron | 50.0% |
| GGTGCAGTAGAATGTACAGG+TGG | - | chr2_3:10849313-10849332 | Msa0277960:intron | 50.0% | |
| GTTACGGTAGCATAGACCAG+AGG | - | chr2_3:10849415-10849434 | Msa0277960:CDS | 50.0% | |
| CAACCCAGATGGTTTACTGG+TGG | - | chr2_3:10849738-10849757 | Msa0277960:intron | 50.0% | |
| GCATCCACCAGTAAACCATC+TGG | + | chr2_3:10849745-10849764 | None:intergenic | 50.0% | |
| GGTGGATGCTCAAACTGGAA+AGG | - | chr2_3:10849756-10849775 | Msa0277960:intron | 50.0% | |
| ! | CATGCCGCATTTGGGATGTT+CGG | - | chr2_3:10849981-10850000 | Msa0277960:CDS | 50.0% |
| TACGCTTCACATCTGATGGG+CGG | - | chr2_3:10850058-10850077 | Msa0277960:intron | 50.0% | |
| ! | CACATCTGATGGGCGGTATA+TGG | - | chr2_3:10850065-10850084 | Msa0277960:intron | 50.0% |
| ! | TGATGGGCGGTATATGGCAA+TGG | - | chr2_3:10850071-10850090 | Msa0277960:intron | 50.0% |
| GGTGTATGGGATCGTACCTA+TGG | - | chr2_3:10850219-10850238 | Msa0277960:intron | 50.0% | |
| TGTTGAACGCGCGTGATGCA+CGG | - | chr2_3:10845293-10845312 | Msa0277960:intron | 55.0% | |
| !!! | CTTTTTTGGGGTGGGGGCTA+TGG | - | chr2_3:10845392-10845411 | Msa0277960:intron | 55.0% |
| CACTGCAGCTGAAGCTAGGA+GGG | - | chr2_3:10845449-10845468 | Msa0277960:intron | 55.0% | |
| ACTGCAGCTGAAGCTAGGAG+GGG | - | chr2_3:10845450-10845469 | Msa0277960:intron | 55.0% | |
| AGCTGAAGCTAGGAGGGGAA+AGG | - | chr2_3:10845455-10845474 | Msa0277960:intron | 55.0% | |
| CATCGCACACGTGTACATGC+AGG | + | chr2_3:10845947-10845966 | None:intergenic | 55.0% | |
| AGGGCATGTTGCTCCATGTG+AGG | - | chr2_3:10846208-10846227 | Msa0277960:intron | 55.0% | |
| GAAACATCCGGGAAGCCTCT+TGG | - | chr2_3:10846307-10846326 | Msa0277960:intron | 55.0% | |
| AAACCCTCCAAGAGGCTTCC+CGG | + | chr2_3:10846317-10846336 | None:intergenic | 55.0% | |
| GAGGAACATTTGCTCGCTGG+CGG | + | chr2_3:10846915-10846934 | None:intergenic | 55.0% | |
| TGCAGTACTTAGACCGACCC+GGG | - | chr2_3:10847452-10847471 | Msa0277960:CDS | 55.0% | |
| GCACTAACTGGCTACCTGTC+AGG | - | chr2_3:10848553-10848572 | Msa0277960:intron | 55.0% | |
| TGCACCTCTATGCGGACACT+TGG | - | chr2_3:10849892-10849911 | Msa0277960:CDS | 55.0% | |
| GGTGCAGCGCCTTGAGGTTA+GGG | + | chr2_3:10844478-10844497 | None:intergenic | 60.0% | |
| AGGTGCAGCGCCTTGAGGTT+AGG | + | chr2_3:10844479-10844498 | None:intergenic | 60.0% | |
| GTTGAACGCGCGTGATGCAC+GGG | - | chr2_3:10845294-10845313 | Msa0277960:intron | 60.0% | |
| CCTCCTAGCTTCAGCTGCAG+TGG | + | chr2_3:10845451-10845470 | None:intergenic | 60.0% | |
| CCACTGCAGCTGAAGCTAGG+AGG | - | chr2_3:10845448-10845467 | Msa0277960:intron | 60.0% | |
| ACATCCGGGAAGCCTCTTGG+AGG | - | chr2_3:10846310-10846329 | Msa0277960:intron | 60.0% | |
| CATCCGGGAAGCCTCTTGGA+GGG | - | chr2_3:10846311-10846330 | Msa0277960:intron | 60.0% | |
| !! | GGGTTTGTTACAGGTGGGCC+CGG | + | chr2_3:10846845-10846864 | None:intergenic | 60.0% |
| GAACATTTGCTCGCTGGCGG+TGG | + | chr2_3:10846912-10846931 | None:intergenic | 60.0% | |
| CTAAGTGAAGATCCGCGGCG+TGG | - | chr2_3:10846984-10847003 | Msa0277960:intron | 60.0% | |
| GCAGTACTTAGACCGACCCG+GGG | - | chr2_3:10847453-10847472 | Msa0277960:CDS | 60.0% | |
| ! | GCATCGGCATGGCATCCTGA+TGG | - | chr2_3:10849926-10849945 | Msa0277960:CDS | 60.0% |
| ! | GGTGAAGGTGCAGCGCCTTG+AGG | + | chr2_3:10844484-10844503 | None:intergenic | 65.0% |
| !! | TTTCGTGGCGGGAGAGCGCT+TGG | - | chr2_3:10845053-10845072 | Msa0277960:CDS | 65.0% |
| TCGCTGGCGGTGGCATGACT+TGG | + | chr2_3:10846902-10846921 | None:intergenic | 65.0% | |
| AGATCCGCGGCGTGGCTATC+CGG | - | chr2_3:10846992-10847011 | Msa0277960:intron | 65.0% | |
| TACACCGGATAGCCACGCCG+CGG | + | chr2_3:10846999-10847018 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 10844390 | 10850592 | 10844390 | ID=Msa0277960;Name=Msa0277960 |
| chr2_3 | mRNA | 10844390 | 10850592 | 10844390 | ID=Msa0277960-mRNA-1;Parent=Msa0277960;Name=Msa0277960-mRNA-1;_AED=0.24;_eAED=0.24;_QI=163|1|1|1|0.88|0.8|10|280|452 |
| chr2_3 | exon | 10844390 | 10845095 | 10844390 | ID=Msa0277960-mRNA-1:exon:4812;Parent=Msa0277960-mRNA-1 |
| chr2_3 | exon | 10845205 | 10845291 | 10845205 | ID=Msa0277960-mRNA-1:exon:4811;Parent=Msa0277960-mRNA-1 |
| chr2_3 | exon | 10847193 | 10847298 | 10847193 | ID=Msa0277960-mRNA-1:exon:4810;Parent=Msa0277960-mRNA-1 |
| chr2_3 | exon | 10847434 | 10847525 | 10847434 | ID=Msa0277960-mRNA-1:exon:4809;Parent=Msa0277960-mRNA-1 |
| chr2_3 | exon | 10848564 | 10848674 | 10848564 | ID=Msa0277960-mRNA-1:exon:4808;Parent=Msa0277960-mRNA-1 |
| chr2_3 | exon | 10848753 | 10848887 | 10848753 | ID=Msa0277960-mRNA-1:exon:4807;Parent=Msa0277960-mRNA-1 |
| chr2_3 | exon | 10849194 | 10849280 | 10849194 | ID=Msa0277960-mRNA-1:exon:4806;Parent=Msa0277960-mRNA-1 |
| chr2_3 | exon | 10849386 | 10849553 | 10849386 | ID=Msa0277960-mRNA-1:exon:4805;Parent=Msa0277960-mRNA-1 |
| chr2_3 | exon | 10849861 | 10850036 | 10849861 | ID=Msa0277960-mRNA-1:exon:4804;Parent=Msa0277960-mRNA-1 |
| chr2_3 | exon | 10850459 | 10850592 | 10850459 | ID=Msa0277960-mRNA-1:exon:4803;Parent=Msa0277960-mRNA-1 |
| chr2_3 | five_prime_UTR | 10850459 | 10850592 | 10850459 | ID=Msa0277960-mRNA-1:five_prime_utr;Parent=Msa0277960-mRNA-1 |
| chr2_3 | five_prime_UTR | 10850008 | 10850036 | 10850008 | ID=Msa0277960-mRNA-1:five_prime_utr;Parent=Msa0277960-mRNA-1 |
| chr2_3 | CDS | 10849861 | 10850007 | 10849861 | ID=Msa0277960-mRNA-1:cds;Parent=Msa0277960-mRNA-1 |
| chr2_3 | CDS | 10849386 | 10849553 | 10849386 | ID=Msa0277960-mRNA-1:cds;Parent=Msa0277960-mRNA-1 |
| chr2_3 | CDS | 10849194 | 10849280 | 10849194 | ID=Msa0277960-mRNA-1:cds;Parent=Msa0277960-mRNA-1 |
| chr2_3 | CDS | 10848753 | 10848887 | 10848753 | ID=Msa0277960-mRNA-1:cds;Parent=Msa0277960-mRNA-1 |
| chr2_3 | CDS | 10848564 | 10848674 | 10848564 | ID=Msa0277960-mRNA-1:cds;Parent=Msa0277960-mRNA-1 |
| chr2_3 | CDS | 10847434 | 10847525 | 10847434 | ID=Msa0277960-mRNA-1:cds;Parent=Msa0277960-mRNA-1 |
| chr2_3 | CDS | 10847193 | 10847298 | 10847193 | ID=Msa0277960-mRNA-1:cds;Parent=Msa0277960-mRNA-1 |
| chr2_3 | CDS | 10845205 | 10845291 | 10845205 | ID=Msa0277960-mRNA-1:cds;Parent=Msa0277960-mRNA-1 |
| chr2_3 | CDS | 10844670 | 10845095 | 10844670 | ID=Msa0277960-mRNA-1:cds;Parent=Msa0277960-mRNA-1 |
| chr2_3 | three_prime_UTR | 10844390 | 10844669 | 10844390 | ID=Msa0277960-mRNA-1:three_prime_utr;Parent=Msa0277960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
