AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0825280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0825280 MtrunA17_Chr5g0446951 99.857 699 1 0 1 699 1 699 0.0 1419
Msa0825280 MtrunA17_Chr5g0446941 99.857 699 1 0 1 699 1 699 0.0 1419
Msa0825280 MtrunA17_Chr6g0469201 88.160 701 79 3 1 699 1 699 0.0 1186
Msa0825280 MtrunA17_Chr1g0202601 83.429 700 92 3 1 699 6 682 0.0 1110
Msa0825280 MtrunA17_Chr1g0156731 48.867 706 320 8 5 673 78 779 0.0 642
Msa0825280 MtrunA17_Chr5g0447581 45.562 676 345 10 5 667 90 755 0.0 577
Msa0825280 MtrunA17_Chr5g0420861 45.634 710 354 13 5 698 82 775 0.0 577
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0825280 AT5G56000.1 90.714 700 63 2 1 699 1 699 0.0 1205
Msa0825280 AT5G56030.1 92.286 700 52 2 1 699 1 699 0.0 1196
Msa0825280 AT5G56010.1 92.000 700 54 2 1 699 1 699 0.0 1194
Msa0825280 AT5G56030.2 88.615 729 52 3 1 699 1 728 0.0 1181
Msa0825280 AT5G52640.1 85.185 702 99 5 1 699 1 700 0.0 1148
Msa0825280 AT4G24190.1 50.356 703 310 8 5 672 77 775 0.0 643
Msa0825280 AT4G24190.2 50.356 703 310 8 5 672 77 775 0.0 642
Msa0825280 AT2G04030.1 47.485 676 329 11 5 668 77 738 0.0 597
Msa0825280 AT3G07770.1 45.495 677 346 10 5 668 95 761 0.0 590
Msa0825280 AT3G07770.3 45.495 677 346 10 5 668 95 761 0.0 590
Msa0825280 AT3G07770.2 45.495 677 346 10 5 668 95 761 0.0 590
Msa0825280 AT2G04030.2 47.033 674 332 11 5 668 77 735 0.0 588

Find 185 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGGGTCAGTTGGAGTTTA+AGG 0.170053 5_3:-65042190 Msa0825280:CDS
GAGACTGCTCTTCTTACTTC+TGG 0.243959 5_3:-65041181 Msa0825280:CDS
TTCTCAACCCAAAGAGAAAT+TGG 0.256773 5_3:+65042483 None:intergenic
TGAACAAGCAGAAGCCTATT+TGG 0.260701 5_3:-65042314 Msa0825280:CDS
TTAGCTATCCAATTTCTCTT+TGG 0.269210 5_3:-65042491 Msa0825280:CDS
CTTGATGAGCCCAACACTTT+TGG 0.271765 5_3:-65041151 Msa0825280:CDS
TAGCTATCCAATTTCTCTTT+GGG 0.282969 5_3:-65042490 Msa0825280:CDS
ACAAGAGACGTTCGCTTTCC+AGG 0.298645 5_3:-65043925 Msa0825280:CDS
ACTCAAGTTGATCCTCCTTT+AGG 0.313372 5_3:+65042565 None:intergenic
TTGTTCCGCCATTGCCGATC+TGG 0.322186 5_3:+65043944 None:intergenic
TGTTTACCTATCGTAAGTTT+TGG 0.322963 5_3:-65040860 Msa0825280:three_prime_UTR
AATTTGTATCAAAATATAAA+AGG 0.330039 5_3:+65040807 None:intergenic
TGAAGTAGTTACTATTGTTT+AGG 0.330583 5_3:-65040992 Msa0825280:three_prime_UTR
TCCTCCATGATGGGATTCTC+AGG 0.339757 5_3:+65041271 None:intergenic
CAATGATTGGGAAGAGCATT+TGG 0.340719 5_3:-65042232 Msa0825280:CDS
TGTTTAGTGACTGGTGAGTA+TGG 0.358330 5_3:-65041391 Msa0825280:CDS
GACATACAGCTTGATGTTGT+TGG 0.373069 5_3:+65042110 None:intergenic
AAACGTTAGCTTACCAGCTT+TGG 0.375649 5_3:+65042943 None:intergenic
GTCTGGTACCAAGGAATTCA+TGG 0.376590 5_3:-65042799 Msa0825280:CDS
GAGATCAAAAGGTGCTCTCT+TGG 0.380844 5_3:+65042152 None:intergenic
AATGACATTTACTACATTAC+CGG 0.381181 5_3:-65041718 Msa0825280:CDS
AGTTCTTCCTGATGACCTTA+AGG 0.384170 5_3:+65041959 None:intergenic
ACAAGAGTCTCACCAATGAT+TGG 0.384273 5_3:-65042245 Msa0825280:CDS
TGAGTATCTTAGCTTTGTTA+AGG 0.384871 5_3:-65042046 Msa0825280:CDS
TCTGGCTTCCTCATCCAAAT+AGG 0.390372 5_3:+65042300 None:intergenic
ACATACAGCTTGATGTTGTT+GGG 0.394439 5_3:+65042111 None:intergenic
AAAGTGTTGTTGGTCTTGTC+AGG 0.406501 5_3:+65042995 None:intergenic
AATGATAGTCAAAGTGTTGT+TGG 0.411318 5_3:+65042985 None:intergenic
TCATCCTTTGTAATCTCCTC+TGG 0.414109 5_3:+65042282 None:intergenic
CTTCTGTGCATAATTAACTA+AGG 0.416929 5_3:-65040775 Msa0825280:three_prime_UTR
GAAGAAGGAAGAGGAGGGTA+AGG 0.417477 5_3:-65042418 Msa0825280:CDS
ACTATCATTGATAGTGGCAT+TGG 0.423433 5_3:-65042971 Msa0825280:CDS
GTGAGTATGATTGGACAGTT+TGG 0.425748 5_3:-65042753 Msa0825280:CDS
CGAGGAAGAGAAGAAGGAAG+AGG 0.429375 5_3:-65042427 Msa0825280:CDS
GGTCATGTCATCACCACTCT+TGG 0.434025 5_3:+65041780 None:intergenic
GGAAGAGGAGGGTAAGGTTG+AGG 0.435286 5_3:-65042412 Msa0825280:CDS
CTTCTCTGTTGAGGGTCAGT+TGG 0.437261 5_3:-65042199 Msa0825280:CDS
ACAAGATCCTTAAGGTCATC+AGG 0.437555 5_3:-65041966 Msa0825280:CDS
GAGTATCTTAGCTTTGTTAA+GGG 0.438963 5_3:-65042045 Msa0825280:CDS
CATGAAGGCACAAGCTTTGA+GGG 0.445178 5_3:-65041344 Msa0825280:CDS
TTTGTGTCAAAGAGATCAAA+AGG 0.446679 5_3:+65042141 None:intergenic
GTTAAGCACTTCTCTGTTGA+GGG 0.447502 5_3:-65042207 Msa0825280:CDS
CTAGTGTCTGCAACTAAAGA+AGG 0.450314 5_3:-65041562 Msa0825280:CDS
ACTTTGACTATCATTGATAG+TGG 0.450944 5_3:-65042977 Msa0825280:CDS
CCTTGAGAAGCTTAGGAAGA+AGG 0.459680 5_3:-65041662 Msa0825280:CDS
CAAGAGTCTCACCAATGATT+GGG 0.462392 5_3:-65042244 Msa0825280:CDS
CAAATGCTCTTCCCAATCAT+TGG 0.463958 5_3:+65042233 None:intergenic
TATAGCTTCCATGAATTCCT+TGG 0.467031 5_3:+65042791 None:intergenic
TGGTCAGCTCAAGGAATTTG+AGG 0.468755 5_3:-65041593 Msa0825280:CDS
TGCTTACCTTGTTGCTGAGA+AGG 0.468853 5_3:-65042715 Msa0825280:CDS
AGTAAATGACCCACCAGCTT+GGG 0.469169 5_3:+65042644 None:intergenic
AGATCAAAAGGTGCTCTCTT+GGG 0.469930 5_3:+65042153 None:intergenic
TGTTAAGCACTTCTCTGTTG+AGG 0.472630 5_3:-65042208 Msa0825280:CDS
TTCCTCAGCTCCTCCATGAT+GGG 0.474148 5_3:+65041262 None:intergenic
AGTAGACGAGGAGAAAGAAA+AGG 0.477035 5_3:-65042388 Msa0825280:CDS
TTTCTCTAAGAACTTGAAGC+TGG 0.477075 5_3:-65041863 Msa0825280:CDS
GGTGCTGATGTGAGTATGAT+TGG 0.477447 5_3:-65042762 Msa0825280:CDS
TTGAGGGATAGCAGCATGGC+TGG 0.477457 5_3:-65041328 Msa0825280:CDS
TCATGAAGGCACAAGCTTTG+AGG 0.479345 5_3:-65041345 Msa0825280:CDS
TGAGGACGAGGAAGAGAAGA+AGG 0.480741 5_3:-65042433 Msa0825280:CDS
AGAATCAAGCTTGCTCTTGT+CGG 0.482487 5_3:+65043045 None:intergenic
TAGCTTTGTTAAGGGTATTG+TGG 0.484688 5_3:-65042037 Msa0825280:CDS
CTTTGAAATTGCTGAGAACA+AGG 0.486596 5_3:-65041911 Msa0825280:CDS
GGAAGAGAAGAAGGAAGAGG+AGG 0.487208 5_3:-65042424 Msa0825280:CDS
CATGTCATCACCACTCTTGG+TGG 0.488480 5_3:+65041783 None:intergenic
ATTCTGTCCTTCCTTCATCC+TGG 0.488551 5_3:+65041738 None:intergenic
CTAAGCTTGCTGATTTGCTC+AGG 0.489387 5_3:-65041813 Msa0825280:CDS
TCAACAGAACAAGATCCTTA+AGG 0.489546 5_3:-65041974 Msa0825280:CDS
GGTGTCTAATGAATGGTCTT+TGG 0.492991 5_3:-65042337 Msa0825280:CDS
ATGATTGGACAGTTTGGTGT+TGG 0.493545 5_3:-65042747 Msa0825280:CDS
GGAACGCCGTCTGAAGGACT+TGG 0.493605 5_3:-65042535 Msa0825280:CDS
AACAGCTTTCTTGCTTTCAC+CGG 0.494202 5_3:+65041699 None:intergenic
TAAAATAACTCTCATCCTAA+AGG 0.494415 5_3:-65042580 Msa0825280:CDS
CTTCCTAAGCTTCTCAAGGA+AGG 0.495109 5_3:+65041666 None:intergenic
CAATCTTTGCAAGGTGATCA+AGG 0.496155 5_3:-65041476 Msa0825280:CDS
GTAGTTACTATTGTTTAGGA+AGG 0.496454 5_3:-65040988 Msa0825280:three_prime_UTR
GGCATTGGAATGACCAAAGC+TGG 0.498686 5_3:-65042956 Msa0825280:intron
GGGTGACAAGGTTGAGAAAG+TGG 0.499707 5_3:-65041446 Msa0825280:CDS
ATCTCTCTTGAAATGTTAAG+TGG 0.500434 5_3:+65042000 None:intergenic
TTCGTCATCATTGTGCTTGG+TGG 0.500444 5_3:+65042683 None:intergenic
CTAGGTACCATTGCTAGGTC+TGG 0.502477 5_3:-65042816 Msa0825280:CDS
GAAGAGAAGAAGGAAGAGGA+GGG 0.502813 5_3:-65042423 Msa0825280:CDS
AGAGAGAGTTGCAGAGTGTG+AGG 0.503557 5_3:+65044019 None:intergenic
GTGGGTCATTTACTGTGACC+AGG 0.504199 5_3:-65042635 Msa0825280:CDS
GATACTACTGGTGAAGCTCT+TGG 0.506627 5_3:-65042612 Msa0825280:CDS
TCTCCTTGCTGTTTAGTGAC+TGG 0.506819 5_3:-65041400 Msa0825280:CDS
TTTCCTCAGCTCCTCCATGA+TGG 0.507054 5_3:+65041261 None:intergenic
CTTGAGAAGCTTAGGAAGAA+GGG 0.508184 5_3:-65041661 Msa0825280:CDS
CAAGGTGATCAAGGAGGTGT+TGG 0.509412 5_3:-65041467 Msa0825280:CDS
TTCCTAAGCTTCTCAAGGAA+GGG 0.510661 5_3:+65041667 None:intergenic
TCCTAAGCTTCTCAAGGAAG+GGG 0.515007 5_3:+65041668 None:intergenic
AGCTTCACCAGTAGTATCCC+TGG 0.516220 5_3:+65042617 None:intergenic
CTTCATGATCCTCTCCATGT+TGG 0.521693 5_3:+65041360 None:intergenic
TGCTGACATGCCACCATTGG+AGG 0.530142 5_3:-65041065 Msa0825280:CDS
ATCCTGTTGCCAAAAGTGTT+GGG 0.532827 5_3:+65041142 None:intergenic
ATTCACAGGATGCTCAAGCT+TGG 0.534491 5_3:-65041121 Msa0825280:CDS
TCAGCATCAGCTTCCTCCAA+TGG 0.535356 5_3:+65041052 None:intergenic
CATTGCTAGGTCTGGTACCA+AGG 0.535688 5_3:-65042808 Msa0825280:CDS
TTAAGGAGGTGTCTAATGAA+TGG 0.538054 5_3:-65042344 Msa0825280:CDS
TACTGGTGAAGCTCTTGGTA+GGG 0.540570 5_3:-65042607 Msa0825280:CDS
TAGGTAAACAATAGCTACGC+TGG 0.543004 5_3:+65040873 None:intergenic
TTCATGGAAGCTATAGCTGC+TGG 0.543301 5_3:-65042783 Msa0825280:CDS
AATCCTGTTGCCAAAAGTGT+TGG 0.544511 5_3:+65041141 None:intergenic
TGATGCTGACATGCCACCAT+TGG 0.545200 5_3:-65041068 Msa0825280:CDS
TTCTCTAAGAACTTGAAGCT+GGG 0.547307 5_3:-65041862 Msa0825280:CDS
GGTCAGCTCAAGGAATTTGA+GGG 0.548038 5_3:-65041592 Msa0825280:CDS
GTGTGGGAGTCCCAAGCTGG+TGG 0.550695 5_3:-65042654 Msa0825280:CDS
CTGTTCGTCATCATTGTGCT+TGG 0.552015 5_3:+65042680 None:intergenic
TTAACAAAGCTAAGATACTC+AGG 0.554583 5_3:+65042048 None:intergenic
ATAATGTGAATGAACAGCTC+TGG 0.554976 5_3:+65043019 None:intergenic
TAAGGTCATCAGGAAGAACT+TGG 0.555403 5_3:-65041956 Msa0825280:CDS
CCTTCTTCCTAAGCTTCTCA+AGG 0.555668 5_3:+65041662 None:intergenic
CAGTAAATGACCCACCAGCT+TGG 0.561388 5_3:+65042643 None:intergenic
CTACTGGTGAAGCTCTTGGT+AGG 0.561530 5_3:-65042608 Msa0825280:CDS
GGAAACGTGCTGATGCTGAC+AGG 0.562915 5_3:-65041243 Msa0825280:CDS
TAGTGACTGGTGAGTATGGT+TGG 0.563826 5_3:-65041387 Msa0825280:CDS
GGACTATGTTACCAGGATGA+AGG 0.567325 5_3:-65041749 Msa0825280:CDS
GAAAGAGATTTCTGATGATG+AGG 0.568419 5_3:-65042451 Msa0825280:CDS
TCTTGAGGAACGCCGTCTGA+AGG 0.568654 5_3:-65042541 Msa0825280:CDS
CAAAAGTGTTGGGCTCATCA+AGG 0.569013 5_3:+65041152 None:intergenic
AGAGGGAAGCAAGATGGAAG+AGG 0.571151 5_3:-65041026 Msa0825280:CDS
CAAGGAGGTGTTGGGTGACA+AGG 0.575150 5_3:-65041458 Msa0825280:CDS
GGTAACATAGTCCTTGAGGC+TGG 0.577318 5_3:+65041759 None:intergenic
GGGATATGAAGTGATTTACA+TGG 0.578493 5_3:-65041641 Msa0825280:CDS
CCTCCATGATGGGATTCTCA+GGG 0.578771 5_3:+65041272 None:intergenic
AGCAAGGAGAATCGACAACT+CGG 0.578868 5_3:+65041413 None:intergenic
ACAACCTAGGTACCATTGCT+AGG 0.579010 5_3:-65042821 Msa0825280:CDS
TGTCGGTCAAGCCCTCAAAA+CGG 0.582332 5_3:+65043062 None:intergenic
GCAGATTTGGTGAACAACCT+AGG 0.583680 5_3:-65042834 Msa0825280:intron
AGCAGAAGCCTATTTGGATG+AGG 0.584932 5_3:-65042308 Msa0825280:CDS
ACTGGTGAAGCTCTTGGTAG+GGG 0.586981 5_3:-65042606 Msa0825280:CDS
GAAGTTGATTGATCTCAGCC+TGG 0.587212 5_3:+65043907 None:intergenic
CAGACCTAGCAATGGTACCT+AGG 0.590700 5_3:+65042817 None:intergenic
CATCACCACTCTTGGTGGAG+TGG 0.592725 5_3:+65041788 None:intergenic
TAAGGTTGAGGAAGTAGACG+AGG 0.592744 5_3:-65042400 Msa0825280:CDS
TGGGTCATTTACTGTGACCA+GGG 0.596558 5_3:-65042634 Msa0825280:CDS
CAACCCTGAGAATCCCATCA+TGG 0.597286 5_3:-65041275 Msa0825280:CDS
ATCCCATCATGGAGGAGCTG+AGG 0.597622 5_3:-65041264 Msa0825280:CDS
GTATGCTGTTGGTCAGCTCA+AGG 0.599835 5_3:-65041602 Msa0825280:CDS
GAAGTTCGACAATCTTTGCA+AGG 0.601872 5_3:-65041485 Msa0825280:CDS
GAAGCTGATGCTGATGCAGA+GGG 0.602230 5_3:-65041043 Msa0825280:CDS
TGATGCAGAGGGAAGCAAGA+TGG 0.604134 5_3:-65041032 Msa0825280:CDS
CAGGAATGACAAATCTGTGA+AGG 0.605359 5_3:-65041224 Msa0825280:CDS
GATTTCTGATGATGAGGACG+AGG 0.608743 5_3:-65042445 Msa0825280:CDS
TCCTGGTAACATAGTCCTTG+AGG 0.608835 5_3:+65041755 None:intergenic
TAGTGTCTGCAACTAAAGAA+GGG 0.609080 5_3:-65041561 Msa0825280:CDS
GCCTCAAGGACTATGTTACC+AGG 0.610223 5_3:-65041756 Msa0825280:CDS
CATGTCAAGCAAGAAGACAA+TGG 0.611061 5_3:-65041302 Msa0825280:CDS
CAATAACCTTCTCAGCAACA+AGG 0.612540 5_3:+65042709 None:intergenic
TATGTGTGGGAGTCCCAAGC+TGG 0.615041 5_3:-65042657 Msa0825280:CDS
AGCTTTGAGGGATAGCAGCA+TGG 0.615872 5_3:-65041332 Msa0825280:CDS
AATAACTCTCATCCTAAAGG+AGG 0.618093 5_3:-65042577 Msa0825280:CDS
AGGTAAACAATAGCTACGCT+GGG 0.618284 5_3:+65040874 None:intergenic
GCTTGGTCTTAGCATTGATG+AGG 0.619021 5_3:-65041104 Msa0825280:CDS
CAACATGGAGAGGATCATGA+AGG 0.620851 5_3:-65041359 Msa0825280:CDS
GTTGAAACTTGACGAGAGTG+AGG 0.621123 5_3:-65041539 Msa0825280:CDS
CTATTGTTTAGGAAGGTGTG+AGG 0.624521 5_3:-65040981 Msa0825280:three_prime_UTR
ACTGTGACCAGGGATACTAC+TGG 0.626949 5_3:-65042624 Msa0825280:CDS
GGATCAACTTGAGTATCTTG+AGG 0.629396 5_3:-65042556 Msa0825280:CDS
TAAGGGTATTGTGGACTCTG+AGG 0.633755 5_3:-65042028 Msa0825280:CDS
AGGTACCACTCCACCAAGAG+TGG 0.636721 5_3:-65041793 Msa0825280:CDS
GCAATTGATGAGTATGCTGT+TGG 0.641021 5_3:-65041613 Msa0825280:CDS
GTATGGTTGGACTGCCAACA+TGG 0.641083 5_3:-65041374 Msa0825280:CDS
TCTTAACCAAGTCCTTCAGA+CGG 0.644789 5_3:+65042529 None:intergenic
TGTGGGAGTCCCAAGCTGGT+GGG 0.646830 5_3:-65042653 Msa0825280:CDS
GACACACCAAAACTTACGAT+AGG 0.650905 5_3:+65040854 None:intergenic
GCATCAGCTTCCTCCAATGG+TGG 0.651686 5_3:+65041055 None:intergenic
AAGGTGATCAAGGAGGTGTT+GGG 0.654251 5_3:-65041466 Msa0825280:CDS
TGATGACATGACCAGCCTCA+AGG 0.657377 5_3:-65041770 Msa0825280:CDS
CCTAAGCTTCTCAAGGAAGG+GGG 0.664638 5_3:+65041669 None:intergenic
GTTGGACTGCCAACATGGAG+AGG 0.668192 5_3:-65041369 Msa0825280:CDS
TATGTTACCAGGATGAAGGA+AGG 0.670222 5_3:-65041745 Msa0825280:CDS
GGAAGCTGATGCTGATGCAG+AGG 0.671926 5_3:-65041044 Msa0825280:CDS
AGTTGTCCATGATGAAAACA+CGG 0.681053 5_3:+65042085 None:intergenic
TCACCAGTCACTAAACAGCA+AGG 0.682332 5_3:+65041397 None:intergenic
GAAGCCAGAGGAGATTACAA+AGG 0.683556 5_3:-65042286 Msa0825280:CDS
CTTGAAGCTGGGTATCCATG+AGG 0.697436 5_3:-65041851 Msa0825280:CDS
ATGATGACGAACAGTATGTG+TGG 0.698166 5_3:-65042671 Msa0825280:CDS
CTTGGTACCAGACCTAGCAA+TGG 0.700707 5_3:+65042809 None:intergenic
TTTCATCATGGACAACTGTG+AGG 0.702798 5_3:-65042079 Msa0825280:CDS
CCCTGAGAATCCCATCATGG+AGG 0.716906 5_3:-65041272 Msa0825280:CDS
TATTTGGATGAGGAAGCCAG+AGG 0.740409 5_3:-65042298 Msa0825280:CDS
TGATGACGAACAGTATGTGT+GGG 0.740423 5_3:-65042670 Msa0825280:CDS
TCTTTGCAAGGTGATCAAGG+AGG 0.803604 5_3:-65041473 Msa0825280:CDS
TGTCCATGATGAAAACACGG+CGG 0.827708 5_3:+65042088 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATTCAATTTCAATTT+AGG + chr5_3:65041339-65041358 None:intergenic 10.0%
!!! TTGTTTTTAATTTTGAATTT+TGG - chr5_3:65043840-65043859 Msa0825280:CDS 10.0%
!! AATTTGTATCAAAATATAAA+AGG + chr5_3:65043968-65043987 None:intergenic 10.0%
!!! TGGATTATTTTTTCAATTTT+AGG - chr5_3:65041071-65041090 Msa0825280:CDS 15.0%
!!! GGATTATTTTTTCAATTTTA+GGG - chr5_3:65041072-65041091 Msa0825280:CDS 15.0%
!! TTAATTGATTATATACTCTT+AGG - chr5_3:65041101-65041120 Msa0825280:CDS 15.0%
!! TAATTGATTATATACTCTTA+GGG - chr5_3:65041102-65041121 Msa0825280:CDS 15.0%
!!! AAATTGAATTTTAATTAGTC+CGG - chr5_3:65041345-65041364 Msa0825280:CDS 15.0%
!! ACTTTCATTCATATAATTAA+AGG + chr5_3:65041474-65041493 None:intergenic 15.0%
!!! TCTAATACTTTGAAATATTA+GGG - chr5_3:65041581-65041600 Msa0825280:CDS 15.0%
!!! TCTTTTGTTATCGTTTTTAT+TGG - chr5_3:65041051-65041070 Msa0825280:CDS 20.0%
!!! ATGATTTTTTAGTCATGTTT+AGG - chr5_3:65041189-65041208 Msa0825280:CDS 20.0%
!! AAAAAATTGATCACGTAATA+AGG + chr5_3:65041388-65041407 None:intergenic 20.0%
!!! GTCTAATACTTTGAAATATT+AGG - chr5_3:65041580-65041599 Msa0825280:CDS 20.0%
!!! TTTTATTAGATGCAATTTTC+TGG - chr5_3:65043874-65043893 Msa0825280:CDS 20.0%
!!! CAATACTTTTTACAGTAACA+AGG - chr5_3:65040901-65040920 Msa0825280:three_prime_UTR 25.0%
!! ATTATATACTCTTAGGGTTT+TGG - chr5_3:65041108-65041127 Msa0825280:CDS 25.0%
! ACATGACTAAAAAATCATCA+CGG + chr5_3:65041187-65041206 None:intergenic 25.0%
! ATTGTGATGAATGTTCTATA+CGG - chr5_3:65041238-65041257 Msa0825280:CDS 25.0%
!!! ATACTTTGAAATATTAGGGT+TGG - chr5_3:65041585-65041604 Msa0825280:CDS 25.0%
!!! TACTTTGAAATATTAGGGTT+GGG - chr5_3:65041586-65041605 Msa0825280:CDS 25.0%
!!! TGTTTTTATGAGTCAGAAAT+TGG - chr5_3:65041851-65041870 Msa0825280:CDS 25.0%
! TAAAATAACTCTCATCCTAA+AGG - chr5_3:65042192-65042211 Msa0825280:CDS 25.0%
! GAAGAAAAAGAAGAAGATTA+AGG - chr5_3:65042411-65042430 Msa0825280:CDS 25.0%
! AATGACATTTACTACATTAC+CGG - chr5_3:65043054-65043073 Msa0825280:CDS 25.0%
! TGAAGTAGTTACTATTGTTT+AGG - chr5_3:65043780-65043799 Msa0825280:intron 25.0%
!!! GAAAGTGTTTTGTTTTGTTG+TGG + chr5_3:65040791-65040810 None:intergenic 30.0%
! ACGTTGTCACTTGATATAAT+CGG - chr5_3:65041416-65041435 Msa0825280:CDS 30.0%
!! ATCGGCACTTTAATTTTTGA+AGG - chr5_3:65041434-65041453 Msa0825280:CDS 30.0%
! AAATATTAGGGTTGGGTTTT+AGG - chr5_3:65041593-65041612 Msa0825280:CDS 30.0%
! GCATGATGATTTTATTGTTG+TGG - chr5_3:65041628-65041647 Msa0825280:CDS 30.0%
TATTGTTCTGATTCTTGTGT+TGG - chr5_3:65041658-65041677 Msa0825280:CDS 30.0%
!! AATGATAGTCAAAGTGTTGT+TGG + chr5_3:65041790-65041809 None:intergenic 30.0%
ACTTTGACTATCATTGATAG+TGG - chr5_3:65041795-65041814 Msa0825280:CDS 30.0%
! TCTGTTTTATGTTGCAGATT+TGG - chr5_3:65041925-65041944 Msa0825280:CDS 30.0%
TTAGCTATCCAATTTCTCTT+TGG - chr5_3:65042281-65042300 Msa0825280:CDS 30.0%
TAGCTATCCAATTTCTCTTT+GGG - chr5_3:65042282-65042301 Msa0825280:CDS 30.0%
GAAAAAGAAGAAGATTAAGG+AGG - chr5_3:65042414-65042433 Msa0825280:CDS 30.0%
TTTGTGTCAAAGAGATCAAA+AGG + chr5_3:65042634-65042653 None:intergenic 30.0%
TTAACAAAGCTAAGATACTC+AGG + chr5_3:65042727-65042746 None:intergenic 30.0%
!! TGAGTATCTTAGCTTTGTTA+AGG - chr5_3:65042726-65042745 Msa0825280:CDS 30.0%
!! GAGTATCTTAGCTTTGTTAA+GGG - chr5_3:65042727-65042746 Msa0825280:CDS 30.0%
ATCTCTCTTGAAATGTTAAG+TGG + chr5_3:65042775-65042794 None:intergenic 30.0%
!! AGACTACAACAAGTTTTATG+AGG - chr5_3:65042885-65042904 Msa0825280:intron 30.0%
TGAGGATGAAAAGAAAAAGA+TGG - chr5_3:65043251-65043270 Msa0825280:intron 30.0%
GTAGTTACTATTGTTTAGGA+AGG - chr5_3:65043784-65043803 Msa0825280:intron 30.0%
! TGTTTACCTATCGTAAGTTT+TGG - chr5_3:65043912-65043931 Msa0825280:CDS 30.0%
CTTCTGTGCATAATTAACTA+AGG - chr5_3:65043997-65044016 Msa0825280:five_prime_UTR 30.0%
GAAGAAGAAGAAGCTTACAT+CGG + chr5_3:65040960-65040979 None:intergenic 35.0%
!! TATACTCTTAGGGTTTTGGT+TGG - chr5_3:65041112-65041131 Msa0825280:CDS 35.0%
GGATTGATATCAATACAAGC+CGG + chr5_3:65041367-65041386 None:intergenic 35.0%
! TTTGGATAAGATCCGTTTTG+AGG - chr5_3:65041698-65041717 Msa0825280:CDS 35.0%
! TTGGATAAGATCCGTTTTGA+GGG - chr5_3:65041699-65041718 Msa0825280:CDS 35.0%
ATAATGTGAATGAACAGCTC+TGG + chr5_3:65041756-65041775 None:intergenic 35.0%
!! ACTATCATTGATAGTGGCAT+TGG - chr5_3:65041801-65041820 Msa0825280:CDS 35.0%
TATAGCTTCCATGAATTCCT+TGG + chr5_3:65041984-65042003 None:intergenic 35.0%
AATAACTCTCATCCTAAAGG+AGG - chr5_3:65042195-65042214 Msa0825280:CDS 35.0%
TTCTCAACCCAAAGAGAAAT+TGG + chr5_3:65042292-65042311 None:intergenic 35.0%
! GAAAGAGATTTCTGATGATG+AGG - chr5_3:65042321-65042340 Msa0825280:CDS 35.0%
!! TTAAGGAGGTGTCTAATGAA+TGG - chr5_3:65042428-65042447 Msa0825280:CDS 35.0%
ACATACAGCTTGATGTTGTT+GGG + chr5_3:65042664-65042683 None:intergenic 35.0%
AGTTGTCCATGATGAAAACA+CGG + chr5_3:65042690-65042709 None:intergenic 35.0%
!! TAGCTTTGTTAAGGGTATTG+TGG - chr5_3:65042735-65042754 Msa0825280:CDS 35.0%
TCAACAGAACAAGATCCTTA+AGG - chr5_3:65042798-65042817 Msa0825280:CDS 35.0%
!! CTTTGAAATTGCTGAGAACA+AGG - chr5_3:65042861-65042880 Msa0825280:intron 35.0%
! TTTCTCTAAGAACTTGAAGC+TGG - chr5_3:65042909-65042928 Msa0825280:intron 35.0%
! TTCTCTAAGAACTTGAAGCT+GGG - chr5_3:65042910-65042929 Msa0825280:intron 35.0%
!!! TCTTGTTTTGAGAATCCTCA+TGG + chr5_3:65042939-65042958 None:intergenic 35.0%
GGGATATGAAGTGATTTACA+TGG - chr5_3:65043131-65043150 Msa0825280:intron 35.0%
TAGTGTCTGCAACTAAAGAA+GGG - chr5_3:65043211-65043230 Msa0825280:intron 35.0%
GAAAAAGATGGAAGAACAGA+AGG - chr5_3:65043263-65043282 Msa0825280:intron 35.0%
CTCTGCGAAAAAAACCAGAT+CGG - chr5_3:65040814-65040833 Msa0825280:three_prime_UTR 40.0%
GAAAAAAACCAGATCGGCAA+TGG - chr5_3:65040820-65040839 Msa0825280:three_prime_UTR 40.0%
CGGTGTTCAAACAACAACAA+CGG + chr5_3:65041167-65041186 None:intergenic 40.0%
GTGTTGGAATGTTGTGTTGT+AGG - chr5_3:65041674-65041693 Msa0825280:CDS 40.0%
GAATGTTGTGTTGTAGGCTT+TGG - chr5_3:65041680-65041699 Msa0825280:CDS 40.0%
! AGAATCAAGCTTGCTCTTGT+CGG + chr5_3:65041730-65041749 None:intergenic 40.0%
!! AAAGTGTTGTTGGTCTTGTC+AGG + chr5_3:65041780-65041799 None:intergenic 40.0%
! AAACGTTAGCTTACCAGCTT+TGG + chr5_3:65041832-65041851 None:intergenic 40.0%
GTGAGTATGATTGGACAGTT+TGG - chr5_3:65042019-65042038 Msa0825280:CDS 40.0%
!! ATGATTGGACAGTTTGGTGT+TGG - chr5_3:65042025-65042044 Msa0825280:CDS 40.0%
CAATAACCTTCTCAGCAACA+AGG + chr5_3:65042066-65042085 None:intergenic 40.0%
! ATGATGACGAACAGTATGTG+TGG - chr5_3:65042101-65042120 Msa0825280:CDS 40.0%
! TGATGACGAACAGTATGTGT+GGG - chr5_3:65042102-65042121 Msa0825280:CDS 40.0%
!! ACTCAAGTTGATCCTCCTTT+AGG + chr5_3:65042210-65042229 None:intergenic 40.0%
GGATCAACTTGAGTATCTTG+AGG - chr5_3:65042216-65042235 Msa0825280:CDS 40.0%
TCTTAACCAAGTCCTTCAGA+CGG + chr5_3:65042246-65042265 None:intergenic 40.0%
AGTAGACGAGGAGAAAGAAA+AGG - chr5_3:65042384-65042403 Msa0825280:CDS 40.0%
GGTGTCTAATGAATGGTCTT+TGG - chr5_3:65042435-65042454 Msa0825280:CDS 40.0%
TGAACAAGCAGAAGCCTATT+TGG - chr5_3:65042458-65042477 Msa0825280:CDS 40.0%
TCATCCTTTGTAATCTCCTC+TGG + chr5_3:65042493-65042512 None:intergenic 40.0%
ACAAGAGTCTCACCAATGAT+TGG - chr5_3:65042527-65042546 Msa0825280:CDS 40.0%
CAAGAGTCTCACCAATGATT+GGG - chr5_3:65042528-65042547 Msa0825280:CDS 40.0%
CAAATGCTCTTCCCAATCAT+TGG + chr5_3:65042542-65042561 None:intergenic 40.0%
!! CAATGATTGGGAAGAGCATT+TGG - chr5_3:65042540-65042559 Msa0825280:CDS 40.0%
TGTTAAGCACTTCTCTGTTG+AGG - chr5_3:65042564-65042583 Msa0825280:CDS 40.0%
GTTAAGCACTTCTCTGTTGA+GGG - chr5_3:65042565-65042584 Msa0825280:CDS 40.0%
!! AGATCAAAAGGTGCTCTCTT+GGG + chr5_3:65042622-65042641 None:intergenic 40.0%
GACATACAGCTTGATGTTGT+TGG + chr5_3:65042665-65042684 None:intergenic 40.0%
TTTCATCATGGACAACTGTG+AGG - chr5_3:65042693-65042712 Msa0825280:CDS 40.0%
ACAAGATCCTTAAGGTCATC+AGG - chr5_3:65042806-65042825 Msa0825280:CDS 40.0%
AGTTCTTCCTGATGACCTTA+AGG + chr5_3:65042816-65042835 None:intergenic 40.0%
TAAGGTCATCAGGAAGAACT+TGG - chr5_3:65042816-65042835 Msa0825280:CDS 40.0%
TATGTTACCAGGATGAAGGA+AGG - chr5_3:65043027-65043046 Msa0825280:CDS 40.0%
AACAGCTTTCTTGCTTTCAC+CGG + chr5_3:65043076-65043095 None:intergenic 40.0%
TTCCTAAGCTTCTCAAGGAA+GGG + chr5_3:65043108-65043127 None:intergenic 40.0%
CTTGAGAAGCTTAGGAAGAA+GGG - chr5_3:65043111-65043130 Msa0825280:intron 40.0%
GCAATTGATGAGTATGCTGT+TGG - chr5_3:65043159-65043178 Msa0825280:intron 40.0%
CTAGTGTCTGCAACTAAAGA+AGG - chr5_3:65043210-65043229 Msa0825280:intron 40.0%
GAAGTTCGACAATCTTTGCA+AGG - chr5_3:65043287-65043306 Msa0825280:intron 40.0%
CAATCTTTGCAAGGTGATCA+AGG - chr5_3:65043296-65043315 Msa0825280:intron 40.0%
TGTTTAGTGACTGGTGAGTA+TGG - chr5_3:65043381-65043400 Msa0825280:intron 40.0%
CATGTCAAGCAAGAAGACAA+TGG - chr5_3:65043470-65043489 Msa0825280:intron 40.0%
CAGGAATGACAAATCTGTGA+AGG - chr5_3:65043548-65043567 Msa0825280:intron 40.0%
!! ATCCTGTTGCCAAAAGTGTT+GGG + chr5_3:65043633-65043652 None:intergenic 40.0%
! AATCCTGTTGCCAAAAGTGT+TGG + chr5_3:65043634-65043653 None:intergenic 40.0%
! CTATTGTTTAGGAAGGTGTG+AGG - chr5_3:65043791-65043810 Msa0825280:intron 40.0%
AGGTAAACAATAGCTACGCT+GGG + chr5_3:65043901-65043920 None:intergenic 40.0%
TAGGTAAACAATAGCTACGC+TGG + chr5_3:65043902-65043921 None:intergenic 40.0%
GACACACCAAAACTTACGAT+AGG + chr5_3:65043921-65043940 None:intergenic 40.0%
AAAAACCAGATCGGCAATGG+CGG - chr5_3:65040823-65040842 Msa0825280:three_prime_UTR 45.0%
! GAAGTTGATTGATCTCAGCC+TGG + chr5_3:65040868-65040887 None:intergenic 45.0%
!!! ACTCTTAGGGTTTTGGTTGG+TGG - chr5_3:65041115-65041134 Msa0825280:CDS 45.0%
!! TTTGGTTGGTGGCGTTGTTT+AGG - chr5_3:65041126-65041145 Msa0825280:CDS 45.0%
!! GCAGATTTGGTGAACAACCT+AGG - chr5_3:65041938-65041957 Msa0825280:CDS 45.0%
ACAACCTAGGTACCATTGCT+AGG - chr5_3:65041951-65041970 Msa0825280:CDS 45.0%
GTCTGGTACCAAGGAATTCA+TGG - chr5_3:65041973-65041992 Msa0825280:CDS 45.0%
TTCATGGAAGCTATAGCTGC+TGG - chr5_3:65041989-65042008 Msa0825280:CDS 45.0%
!! GGTGCTGATGTGAGTATGAT+TGG - chr5_3:65042010-65042029 Msa0825280:CDS 45.0%
TGCTTACCTTGTTGCTGAGA+AGG - chr5_3:65042057-65042076 Msa0825280:CDS 45.0%
TTCGTCATCATTGTGCTTGG+TGG + chr5_3:65042092-65042111 None:intergenic 45.0%
CTGTTCGTCATCATTGTGCT+TGG + chr5_3:65042095-65042114 None:intergenic 45.0%
AGTAAATGACCCACCAGCTT+GGG + chr5_3:65042131-65042150 None:intergenic 45.0%
TGGGTCATTTACTGTGACCA+GGG - chr5_3:65042138-65042157 Msa0825280:CDS 45.0%
GATACTACTGGTGAAGCTCT+TGG - chr5_3:65042160-65042179 Msa0825280:CDS 45.0%
TACTGGTGAAGCTCTTGGTA+GGG - chr5_3:65042165-65042184 Msa0825280:CDS 45.0%
! GATTTCTGATGATGAGGACG+AGG - chr5_3:65042327-65042346 Msa0825280:CDS 45.0%
GAAGAGAAGAAGGAAGAGGA+GGG - chr5_3:65042349-65042368 Msa0825280:CDS 45.0%
TAAGGTTGAGGAAGTAGACG+AGG - chr5_3:65042372-65042391 Msa0825280:CDS 45.0%
AGCAGAAGCCTATTTGGATG+AGG - chr5_3:65042464-65042483 Msa0825280:CDS 45.0%
! TCTGGCTTCCTCATCCAAAT+AGG + chr5_3:65042475-65042494 None:intergenic 45.0%
TATTTGGATGAGGAAGCCAG+AGG - chr5_3:65042474-65042493 Msa0825280:CDS 45.0%
GAAGCCAGAGGAGATTACAA+AGG - chr5_3:65042486-65042505 Msa0825280:CDS 45.0%
TGAGGGTCAGTTGGAGTTTA+AGG - chr5_3:65042582-65042601 Msa0825280:CDS 45.0%
!! GAGATCAAAAGGTGCTCTCT+TGG + chr5_3:65042623-65042642 None:intergenic 45.0%
TGTCCATGATGAAAACACGG+CGG + chr5_3:65042687-65042706 None:intergenic 45.0%
!! TAAGGGTATTGTGGACTCTG+AGG - chr5_3:65042744-65042763 Msa0825280:CDS 45.0%
!! CTAAGCTTGCTGATTTGCTC+AGG - chr5_3:65042959-65042978 Msa0825280:CDS 45.0%
TCCTGGTAACATAGTCCTTG+AGG + chr5_3:65043020-65043039 None:intergenic 45.0%
GGACTATGTTACCAGGATGA+AGG - chr5_3:65043023-65043042 Msa0825280:CDS 45.0%
ATTCTGTCCTTCCTTCATCC+TGG + chr5_3:65043037-65043056 None:intergenic 45.0%
TCCTAAGCTTCTCAAGGAAG+GGG + chr5_3:65043107-65043126 None:intergenic 45.0%
CTTCCTAAGCTTCTCAAGGA+AGG + chr5_3:65043109-65043128 None:intergenic 45.0%
CCTTCTTCCTAAGCTTCTCA+AGG + chr5_3:65043113-65043132 None:intergenic 45.0%
CCTTGAGAAGCTTAGGAAGA+AGG - chr5_3:65043110-65043129 Msa0825280:intron 45.0%
TGGTCAGCTCAAGGAATTTG+AGG - chr5_3:65043179-65043198 Msa0825280:intron 45.0%
GGTCAGCTCAAGGAATTTGA+GGG - chr5_3:65043180-65043199 Msa0825280:intron 45.0%
GTTGAAACTTGACGAGAGTG+AGG - chr5_3:65043233-65043252 Msa0825280:intron 45.0%
TCTTTGCAAGGTGATCAAGG+AGG - chr5_3:65043299-65043318 Msa0825280:intron 45.0%
!! AAGGTGATCAAGGAGGTGTT+GGG - chr5_3:65043306-65043325 Msa0825280:intron 45.0%
AGCAAGGAGAATCGACAACT+CGG + chr5_3:65043362-65043381 None:intergenic 45.0%
!! TCTCCTTGCTGTTTAGTGAC+TGG - chr5_3:65043372-65043391 Msa0825280:intron 45.0%
TCACCAGTCACTAAACAGCA+AGG + chr5_3:65043378-65043397 None:intergenic 45.0%
TAGTGACTGGTGAGTATGGT+TGG - chr5_3:65043385-65043404 Msa0825280:intron 45.0%
CTTCATGATCCTCTCCATGT+TGG + chr5_3:65043415-65043434 None:intergenic 45.0%
CAACATGGAGAGGATCATGA+AGG - chr5_3:65043413-65043432 Msa0825280:intron 45.0%
! TCATGAAGGCACAAGCTTTG+AGG - chr5_3:65043427-65043446 Msa0825280:intron 45.0%
! CATGAAGGCACAAGCTTTGA+GGG - chr5_3:65043428-65043447 Msa0825280:intron 45.0%
GAGACTGCTCTTCTTACTTC+TGG - chr5_3:65043591-65043610 Msa0825280:intron 45.0%
!! CAAAAGTGTTGGGCTCATCA+AGG + chr5_3:65043623-65043642 None:intergenic 45.0%
! CTTGATGAGCCCAACACTTT+TGG - chr5_3:65043621-65043640 Msa0825280:intron 45.0%
! CTTTTGGCAACAGGATTCAC+AGG - chr5_3:65043637-65043656 Msa0825280:intron 45.0%
ATTCACAGGATGCTCAAGCT+TGG - chr5_3:65043651-65043670 Msa0825280:intron 45.0%
!! GCTTGGTCTTAGCATTGATG+AGG - chr5_3:65043668-65043687 Msa0825280:intron 45.0%
!!! TTTTTATTTTTTTGTTTATT+AGG - chr5_3:65040984-65041003 Msa0825280:three_prime_UTR 5.0%
!!! TTTTATTTTTTTGTTTATTA+GGG - chr5_3:65040985-65041004 Msa0825280:three_prime_UTR 5.0%
AGAGAGAGTTGCAGAGTGTG+AGG + chr5_3:65040756-65040775 None:intergenic 50.0%
ACAAGAGACGTTCGCTTTCC+AGG - chr5_3:65040847-65040866 Msa0825280:three_prime_UTR 50.0%
TGTCGGTCAAGCCCTCAAAA+CGG + chr5_3:65041713-65041732 None:intergenic 50.0%
! GGCATTGGAATGACCAAAGC+TGG - chr5_3:65041816-65041835 Msa0825280:CDS 50.0%
CAGACCTAGCAATGGTACCT+AGG + chr5_3:65041958-65041977 None:intergenic 50.0%
CTAGGTACCATTGCTAGGTC+TGG - chr5_3:65041956-65041975 Msa0825280:CDS 50.0%
CTTGGTACCAGACCTAGCAA+TGG + chr5_3:65041966-65041985 None:intergenic 50.0%
CATTGCTAGGTCTGGTACCA+AGG - chr5_3:65041964-65041983 Msa0825280:CDS 50.0%
CAGTAAATGACCCACCAGCT+TGG + chr5_3:65042132-65042151 None:intergenic 50.0%
GTGGGTCATTTACTGTGACC+AGG - chr5_3:65042137-65042156 Msa0825280:CDS 50.0%
ACTGTGACCAGGGATACTAC+TGG - chr5_3:65042148-65042167 Msa0825280:CDS 50.0%
AGCTTCACCAGTAGTATCCC+TGG + chr5_3:65042158-65042177 None:intergenic 50.0%
CTACTGGTGAAGCTCTTGGT+AGG - chr5_3:65042164-65042183 Msa0825280:CDS 50.0%
ACTGGTGAAGCTCTTGGTAG+GGG - chr5_3:65042166-65042185 Msa0825280:CDS 50.0%
TGAGGACGAGGAAGAGAAGA+AGG - chr5_3:65042339-65042358 Msa0825280:CDS 50.0%
CGAGGAAGAGAAGAAGGAAG+AGG - chr5_3:65042345-65042364 Msa0825280:CDS 50.0%
GGAAGAGAAGAAGGAAGAGG+AGG - chr5_3:65042348-65042367 Msa0825280:CDS 50.0%
GAAGAAGGAAGAGGAGGGTA+AGG - chr5_3:65042354-65042373 Msa0825280:CDS 50.0%
CTTCTCTGTTGAGGGTCAGT+TGG - chr5_3:65042573-65042592 Msa0825280:CDS 50.0%
! TGTCCGCCGTGTTTTCATCA+TGG - chr5_3:65042681-65042700 Msa0825280:CDS 50.0%
CTTGAAGCTGGGTATCCATG+AGG - chr5_3:65042921-65042940 Msa0825280:intron 50.0%
CATGTCATCACCACTCTTGG+TGG + chr5_3:65042992-65043011 None:intergenic 50.0%
GGTCATGTCATCACCACTCT+TGG + chr5_3:65042995-65043014 None:intergenic 50.0%
TGATGACATGACCAGCCTCA+AGG - chr5_3:65043002-65043021 Msa0825280:CDS 50.0%
GGTAACATAGTCCTTGAGGC+TGG + chr5_3:65043016-65043035 None:intergenic 50.0%
GCCTCAAGGACTATGTTACC+AGG - chr5_3:65043016-65043035 Msa0825280:CDS 50.0%
CCTAAGCTTCTCAAGGAAGG+GGG + chr5_3:65043106-65043125 None:intergenic 50.0%
GTATGCTGTTGGTCAGCTCA+AGG - chr5_3:65043170-65043189 Msa0825280:intron 50.0%
! CAAGGTGATCAAGGAGGTGT+TGG - chr5_3:65043305-65043324 Msa0825280:intron 50.0%
GGGTGACAAGGTTGAGAAAG+TGG - chr5_3:65043326-65043345 Msa0825280:intron 50.0%
GTATGGTTGGACTGCCAACA+TGG - chr5_3:65043398-65043417 Msa0825280:intron 50.0%
!! AGCTTTGAGGGATAGCAGCA+TGG - chr5_3:65043440-65043459 Msa0825280:intron 50.0%
CAACCCTGAGAATCCCATCA+TGG - chr5_3:65043497-65043516 Msa0825280:intron 50.0%
! CCTCCATGATGGGATTCTCA+GGG + chr5_3:65043503-65043522 None:intergenic 50.0%
! TCCTCCATGATGGGATTCTC+AGG + chr5_3:65043504-65043523 None:intergenic 50.0%
TTCCTCAGCTCCTCCATGAT+GGG + chr5_3:65043513-65043532 None:intergenic 50.0%
TTTCCTCAGCTCCTCCATGA+TGG + chr5_3:65043514-65043533 None:intergenic 50.0%
! AGCCCAACACTTTTGGCAAC+AGG - chr5_3:65043628-65043647 Msa0825280:intron 50.0%
TGATGCTGACATGCCACCAT+TGG - chr5_3:65043704-65043723 Msa0825280:intron 50.0%
TCAGCATCAGCTTCCTCCAA+TGG + chr5_3:65043723-65043742 None:intergenic 50.0%
GAAGCTGATGCTGATGCAGA+GGG - chr5_3:65043729-65043748 Msa0825280:intron 50.0%
TGATGCAGAGGGAAGCAAGA+TGG - chr5_3:65043740-65043759 Msa0825280:intron 50.0%
AGAGGGAAGCAAGATGGAAG+AGG - chr5_3:65043746-65043765 Msa0825280:intron 50.0%
TTGTTCCGCCATTGCCGATC+TGG + chr5_3:65040831-65040850 None:intergenic 55.0%
TATGTGTGGGAGTCCCAAGC+TGG - chr5_3:65042115-65042134 Msa0825280:CDS 55.0%
TCTTGAGGAACGCCGTCTGA+AGG - chr5_3:65042231-65042250 Msa0825280:CDS 55.0%
GGAAGAGGAGGGTAAGGTTG+AGG - chr5_3:65042360-65042379 Msa0825280:CDS 55.0%
AGGTACCACTCCACCAAGAG+TGG - chr5_3:65042979-65042998 Msa0825280:CDS 55.0%
CATCACCACTCTTGGTGGAG+TGG + chr5_3:65042987-65043006 None:intergenic 55.0%
CCCCCTTCCTTGAGAAGCTT+AGG - chr5_3:65043103-65043122 Msa0825280:intron 55.0%
!! CAAGGAGGTGTTGGGTGACA+AGG - chr5_3:65043314-65043333 Msa0825280:intron 55.0%
GTTGGACTGCCAACATGGAG+AGG - chr5_3:65043403-65043422 Msa0825280:intron 55.0%
TTGAGGGATAGCAGCATGGC+TGG - chr5_3:65043444-65043463 Msa0825280:intron 55.0%
CCCTGAGAATCCCATCATGG+AGG - chr5_3:65043500-65043519 Msa0825280:intron 55.0%
ATCCCATCATGGAGGAGCTG+AGG - chr5_3:65043508-65043527 Msa0825280:intron 55.0%
! GGAAACGTGCTGATGCTGAC+AGG - chr5_3:65043529-65043548 Msa0825280:intron 55.0%
TGCTGACATGCCACCATTGG+AGG - chr5_3:65043707-65043726 Msa0825280:intron 55.0%
GCATCAGCTTCCTCCAATGG+TGG + chr5_3:65043720-65043739 None:intergenic 55.0%
GGAAGCTGATGCTGATGCAG+AGG - chr5_3:65043728-65043747 Msa0825280:intron 55.0%
TGTGGGAGTCCCAAGCTGGT+GGG - chr5_3:65042119-65042138 Msa0825280:CDS 60.0%
GGAACGCCGTCTGAAGGACT+TGG - chr5_3:65042237-65042256 Msa0825280:CDS 60.0%
GTGTGGGAGTCCCAAGCTGG+TGG - chr5_3:65042118-65042137 Msa0825280:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 65040750 65044044 65040750 ID=Msa0825280;Name=Msa0825280
chr5_3 mRNA 65040750 65044044 65040750 ID=Msa0825280-mRNA-1;Parent=Msa0825280;Name=Msa0825280-mRNA-1;_AED=0.00;_eAED=0.00;_QI=89|1|1|1|1|1|3|268|699
chr5_3 exon 65040750 65042852 65040750 ID=Msa0825280-mRNA-1:exon:20354;Parent=Msa0825280-mRNA-1
chr5_3 exon 65042957 65043098 65042957 ID=Msa0825280-mRNA-1:exon:20353;Parent=Msa0825280-mRNA-1
chr5_3 exon 65043833 65044044 65043833 ID=Msa0825280-mRNA-1:exon:20352;Parent=Msa0825280-mRNA-1
chr5_3 five_prime_UTR 65043956 65044044 65043956 ID=Msa0825280-mRNA-1:five_prime_utr;Parent=Msa0825280-mRNA-1
chr5_3 CDS 65043833 65043955 65043833 ID=Msa0825280-mRNA-1:cds;Parent=Msa0825280-mRNA-1
chr5_3 CDS 65042957 65043098 65042957 ID=Msa0825280-mRNA-1:cds;Parent=Msa0825280-mRNA-1
chr5_3 CDS 65041018 65042852 65041018 ID=Msa0825280-mRNA-1:cds;Parent=Msa0825280-mRNA-1
chr5_3 three_prime_UTR 65040750 65041017 65040750 ID=Msa0825280-mRNA-1:three_prime_utr;Parent=Msa0825280-mRNA-1
Gene Sequence

>Msa0825280

ATGGCGGAACAAGAGACGTTCGCTTTCCAGGCTGAGATCAATCAACTTCTCAGTCTCATCATCAATACTTTTTACAGTAACAAGGAGATTTTTCTTCGTGAACTCATCAGTAACGCTTCCGATGCTTTGGATAAGATCCGTTTTGAGGGCTTGACCGACAAGAGCAAGCTTGATTCTCAGCCAGAGCTGTTCATTCACATTATTCCTGACAAGACCAACAACACTTTGACTATCATTGATAGTGGCATTGGAATGACCAAAGCTGATTTGGTGAACAACCTAGGTACCATTGCTAGGTCTGGTACCAAGGAATTCATGGAAGCTATAGCTGCTGGTGCTGATGTGAGTATGATTGGACAGTTTGGTGTTGGTTTCTACTCTGCTTACCTTGTTGCTGAGAAGGTTATTGTTACCACCAAGCACAATGATGACGAACAGTATGTGTGGGAGTCCCAAGCTGGTGGGTCATTTACTGTGACCAGGGATACTACTGGTGAAGCTCTTGGTAGGGGAACTAAAATAACTCTCATCCTAAAGGAGGATCAACTTGAGTATCTTGAGGAACGCCGTCTGAAGGACTTGGTTAAGAAGCATTCTGAATTTATTAGCTATCCAATTTCTCTTTGGGTTGAGAAGACTATTGAGAAAGAGATTTCTGATGATGAGGACGAGGAAGAGAAGAAGGAAGAGGAGGGTAAGGTTGAGGAAGTAGACGAGGAGAAAGAAAAGGAAGAGAAGAAAAAGAAGAAGATTAAGGAGGTGTCTAATGAATGGTCTTTGGTGAACAAGCAGAAGCCTATTTGGATGAGGAAGCCAGAGGAGATTACAAAGGATGAGTATGCTGCTTTTTACAAGAGTCTCACCAATGATTGGGAAGAGCATTTGGCTGTTAAGCACTTCTCTGTTGAGGGTCAGTTGGAGTTTAAGGCTGTTCTCTTTGTGCCCAAGAGAGCACCTTTTGATCTCTTTGACACAAAGAAGAAGCCCAACAACATCAAGCTGTATGTCCGCCGTGTTTTCATCATGGACAACTGTGAGGAGTTGATGCCTGAGTATCTTAGCTTTGTTAAGGGTATTGTGGACTCTGAGGATCTTCCACTTAACATTTCAAGAGAGATGCTTCAACAGAACAAGATCCTTAAGGTCATCAGGAAGAACTTGGTGAAGAAGTGTCTTGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAAGACTACAACAAGTTTTATGAGGCTTTCTCTAAGAACTTGAAGCTGGGTATCCATGAGGATTCTCAAAACAAGACTAAGCTTGCTGATTTGCTCAGGTACCACTCCACCAAGAGTGGTGATGACATGACCAGCCTCAAGGACTATGTTACCAGGATGAAGGAAGGACAGAATGACATTTACTACATTACCGGTGAAAGCAAGAAAGCTGTTGAGAATTCCCCCTTCCTTGAGAAGCTTAGGAAGAAGGGATATGAAGTGATTTACATGGTTGACGCAATTGATGAGTATGCTGTTGGTCAGCTCAAGGAATTTGAGGGTAAGAAGCTAGTGTCTGCAACTAAAGAAGGGTTGAAACTTGACGAGAGTGAGGATGAAAAGAAAAAGATGGAAGAACAGAAGGAGAAGTTCGACAATCTTTGCAAGGTGATCAAGGAGGTGTTGGGTGACAAGGTTGAGAAAGTGGTTGTTTCTGACCGAGTTGTCGATTCTCCTTGCTGTTTAGTGACTGGTGAGTATGGTTGGACTGCCAACATGGAGAGGATCATGAAGGCACAAGCTTTGAGGGATAGCAGCATGGCTGGTTACATGTCAAGCAAGAAGACAATGGAAATCAACCCTGAGAATCCCATCATGGAGGAGCTGAGGAAACGTGCTGATGCTGACAGGAATGACAAATCTGTGAAGGATCTTGTGCTCTTGCTGTTTGAGACTGCTCTTCTTACTTCTGGATTCAGCCTTGATGAGCCCAACACTTTTGGCAACAGGATTCACAGGATGCTCAAGCTTGGTCTTAGCATTGATGAGGATGCAGCAGAAGCTGATGCTGACATGCCACCATTGGAGGAAGCTGATGCTGATGCAGAGGGAAGCAAGATGGAAGAGGTCGATTAA

Protein sequence

>Msa0825280

MAEQETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFEGLTDKSKLDSQPELFIHIIPDKTNNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEAIAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDTTGEALGRGTKITLILKEDQLEYLEERRLKDLVKKHSEFISYPISLWVEKTIEKEISDDEDEEEKKEEEGKVEEVDEEKEKEEKKKKKIKEVSNEWSLVNKQKPIWMRKPEEITKDEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCEELMPEYLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNKTKLADLLRYHSTKSGDDMTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLRKKGYEVIYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKKMEEQKEKFDNLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENPIMEELRKRADADRNDKSVKDLVLLLFETALLTSGFSLDEPNTFGNRIHRMLKLGLSIDEDAAEADADMPPLEEADADAEGSKMEEVD*