AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0744090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0744090 MtrunA17_Chr5g0446951 99.857 699 1 0 1 699 1 699 0.0 1419
Msa0744090 MtrunA17_Chr5g0446941 99.857 699 1 0 1 699 1 699 0.0 1419
Msa0744090 MtrunA17_Chr6g0469201 88.160 701 79 3 1 699 1 699 0.0 1186
Msa0744090 MtrunA17_Chr1g0202601 83.429 700 92 3 1 699 6 682 0.0 1110
Msa0744090 MtrunA17_Chr1g0156731 48.867 706 320 8 5 673 78 779 0.0 642
Msa0744090 MtrunA17_Chr5g0447581 45.562 676 345 10 5 667 90 755 0.0 577
Msa0744090 MtrunA17_Chr5g0420861 45.634 710 354 13 5 698 82 775 0.0 577
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0744090 AT5G56000.1 90.714 700 63 2 1 699 1 699 0.0 1205
Msa0744090 AT5G56030.1 92.286 700 52 2 1 699 1 699 0.0 1196
Msa0744090 AT5G56010.1 92.000 700 54 2 1 699 1 699 0.0 1194
Msa0744090 AT5G56030.2 88.615 729 52 3 1 699 1 728 0.0 1181
Msa0744090 AT5G52640.1 85.185 702 99 5 1 699 1 700 0.0 1148
Msa0744090 AT4G24190.1 50.356 703 310 8 5 672 77 775 0.0 643
Msa0744090 AT4G24190.2 50.356 703 310 8 5 672 77 775 0.0 642
Msa0744090 AT2G04030.1 47.485 676 329 11 5 668 77 738 0.0 597
Msa0744090 AT3G07770.1 45.495 677 346 10 5 668 95 761 0.0 590
Msa0744090 AT3G07770.3 45.495 677 346 10 5 668 95 761 0.0 590
Msa0744090 AT3G07770.2 45.495 677 346 10 5 668 95 761 0.0 590
Msa0744090 AT2G04030.2 47.033 674 332 11 5 668 77 735 0.0 588

Find 185 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGGGTCAGTTGGAGTTTA+AGG 0.170053 5_1:+64752994 Msa0744090:CDS
GAGACTGCTCTTCTTACTTC+TGG 0.243959 5_1:+64754003 Msa0744090:CDS
TTCTCAACCCAAAGAGAAAT+TGG 0.256773 5_1:-64752701 None:intergenic
TGAACAAGCAGAAGCCTATT+TGG 0.260701 5_1:+64752870 Msa0744090:CDS
TTAGCTATCCAATTTCTCTT+TGG 0.269210 5_1:+64752693 Msa0744090:CDS
CTTGATGAGCCCAACACTTT+TGG 0.271765 5_1:+64754033 Msa0744090:CDS
TAGCTATCCAATTTCTCTTT+GGG 0.282969 5_1:+64752694 Msa0744090:CDS
ACAAGAGACGTTCGCTTTCC+AGG 0.298645 5_1:+64751210 Msa0744090:CDS
ACTCAAGTTGATCCTCCTTT+AGG 0.313372 5_1:-64752619 None:intergenic
TTGTTCCGCCATTGCCGATC+TGG 0.322186 5_1:-64751191 None:intergenic
TGTTTACCTATCGTAAGTTT+TGG 0.322963 5_1:+64754324 Msa0744090:three_prime_UTR
AATTTGTATCAAAATATAAA+AGG 0.330039 5_1:-64754377 None:intergenic
TGAAGTAGTTACTATTGTTT+AGG 0.330583 5_1:+64754192 Msa0744090:three_prime_UTR
TCCTCCATGATGGGATTCTC+AGG 0.339757 5_1:-64753913 None:intergenic
CAATGATTGGGAAGAGCATT+TGG 0.340719 5_1:+64752952 Msa0744090:CDS
TGTTTAGTGACTGGTGAGTA+TGG 0.358330 5_1:+64753793 Msa0744090:CDS
GACATACAGCTTGATGTTGT+TGG 0.373069 5_1:-64753074 None:intergenic
AAACGTTAGCTTACCAGCTT+TGG 0.375649 5_1:-64752241 None:intergenic
GTCTGGTACCAAGGAATTCA+TGG 0.376590 5_1:+64752385 Msa0744090:CDS
GAGATCAAAAGGTGCTCTCT+TGG 0.380844 5_1:-64753032 None:intergenic
AATGACATTTACTACATTAC+CGG 0.381181 5_1:+64753466 Msa0744090:CDS
AGTTCTTCCTGATGACCTTA+AGG 0.384170 5_1:-64753225 None:intergenic
ACAAGAGTCTCACCAATGAT+TGG 0.384273 5_1:+64752939 Msa0744090:CDS
TGAGTATCTTAGCTTTGTTA+AGG 0.384871 5_1:+64753138 Msa0744090:CDS
TCTGGCTTCCTCATCCAAAT+AGG 0.390372 5_1:-64752884 None:intergenic
ACATACAGCTTGATGTTGTT+GGG 0.394439 5_1:-64753073 None:intergenic
AAAGTGTTGTTGGTCTTGTC+AGG 0.406501 5_1:-64752189 None:intergenic
AATGATAGTCAAAGTGTTGT+TGG 0.411318 5_1:-64752199 None:intergenic
TCATCCTTTGTAATCTCCTC+TGG 0.414109 5_1:-64752902 None:intergenic
CTTCTGTGCATAATTAACTA+AGG 0.416929 5_1:+64754409 Msa0744090:three_prime_UTR
GAAGAAGGAAGAGGAGGGTA+AGG 0.417477 5_1:+64752766 Msa0744090:CDS
ACTATCATTGATAGTGGCAT+TGG 0.423433 5_1:+64752213 Msa0744090:CDS
GTGAGTATGATTGGACAGTT+TGG 0.425748 5_1:+64752431 Msa0744090:CDS
CGAGGAAGAGAAGAAGGAAG+AGG 0.429375 5_1:+64752757 Msa0744090:CDS
GGTCATGTCATCACCACTCT+TGG 0.434025 5_1:-64753404 None:intergenic
GGAAGAGGAGGGTAAGGTTG+AGG 0.435286 5_1:+64752772 Msa0744090:CDS
CTTCTCTGTTGAGGGTCAGT+TGG 0.437261 5_1:+64752985 Msa0744090:CDS
ACAAGATCCTTAAGGTCATC+AGG 0.437555 5_1:+64753218 Msa0744090:CDS
GAGTATCTTAGCTTTGTTAA+GGG 0.438963 5_1:+64753139 Msa0744090:CDS
CATGAAGGCACAAGCTTTGA+GGG 0.445178 5_1:+64753840 Msa0744090:CDS
TTTGTGTCAAAGAGATCAAA+AGG 0.446679 5_1:-64753043 None:intergenic
GTTAAGCACTTCTCTGTTGA+GGG 0.447502 5_1:+64752977 Msa0744090:CDS
CTAGTGTCTGCAACTAAAGA+AGG 0.450314 5_1:+64753622 Msa0744090:CDS
ACTTTGACTATCATTGATAG+TGG 0.450944 5_1:+64752207 Msa0744090:CDS
CCTTGAGAAGCTTAGGAAGA+AGG 0.459680 5_1:+64753522 Msa0744090:CDS
CAAGAGTCTCACCAATGATT+GGG 0.462392 5_1:+64752940 Msa0744090:CDS
CAAATGCTCTTCCCAATCAT+TGG 0.463958 5_1:-64752951 None:intergenic
TATAGCTTCCATGAATTCCT+TGG 0.467031 5_1:-64752393 None:intergenic
TGGTCAGCTCAAGGAATTTG+AGG 0.468755 5_1:+64753591 Msa0744090:CDS
TGCTTACCTTGTTGCTGAGA+AGG 0.468853 5_1:+64752469 Msa0744090:CDS
AGTAAATGACCCACCAGCTT+GGG 0.469169 5_1:-64752540 None:intergenic
AGATCAAAAGGTGCTCTCTT+GGG 0.469930 5_1:-64753031 None:intergenic
TGTTAAGCACTTCTCTGTTG+AGG 0.472630 5_1:+64752976 Msa0744090:CDS
TTCCTCAGCTCCTCCATGAT+GGG 0.474148 5_1:-64753922 None:intergenic
AGTAGACGAGGAGAAAGAAA+AGG 0.477035 5_1:+64752796 Msa0744090:CDS
TTTCTCTAAGAACTTGAAGC+TGG 0.477075 5_1:+64753321 Msa0744090:CDS
GGTGCTGATGTGAGTATGAT+TGG 0.477447 5_1:+64752422 Msa0744090:CDS
TTGAGGGATAGCAGCATGGC+TGG 0.477457 5_1:+64753856 Msa0744090:CDS
TCATGAAGGCACAAGCTTTG+AGG 0.479345 5_1:+64753839 Msa0744090:CDS
AGAATCAAGCTTGCTCTTGT+CGG 0.482487 5_1:-64752139 None:intergenic
TAGCTTTGTTAAGGGTATTG+TGG 0.484688 5_1:+64753147 Msa0744090:CDS
CTTTGAAATTGCTGAGAACA+AGG 0.486596 5_1:+64753273 Msa0744090:CDS
GGAAGAGAAGAAGGAAGAGG+AGG 0.487208 5_1:+64752760 Msa0744090:CDS
CATGTCATCACCACTCTTGG+TGG 0.488480 5_1:-64753401 None:intergenic
ATTCTGTCCTTCCTTCATCC+TGG 0.488551 5_1:-64753446 None:intergenic
CTAAGCTTGCTGATTTGCTC+AGG 0.489387 5_1:+64753371 Msa0744090:CDS
TCAACAGAACAAGATCCTTA+AGG 0.489546 5_1:+64753210 Msa0744090:CDS
GGTGTCTAATGAATGGTCTT+TGG 0.492991 5_1:+64752847 Msa0744090:CDS
ATGATTGGACAGTTTGGTGT+TGG 0.493545 5_1:+64752437 Msa0744090:CDS
GGAACGCCGTCTGAAGGACT+TGG 0.493605 5_1:+64752649 Msa0744090:CDS
AACAGCTTTCTTGCTTTCAC+CGG 0.494202 5_1:-64753485 None:intergenic
TAAAATAACTCTCATCCTAA+AGG 0.494415 5_1:+64752604 Msa0744090:CDS
CTTCCTAAGCTTCTCAAGGA+AGG 0.495109 5_1:-64753518 None:intergenic
CAATCTTTGCAAGGTGATCA+AGG 0.496155 5_1:+64753708 Msa0744090:CDS
GTAGTTACTATTGTTTAGGA+AGG 0.496454 5_1:+64754196 Msa0744090:three_prime_UTR
GGCATTGGAATGACCAAAGC+TGG 0.498686 5_1:+64752228 Msa0744090:CDS
GGGTGACAAGGTTGAGAAAG+TGG 0.499707 5_1:+64753738 Msa0744090:CDS
ATCTCTCTTGAAATGTTAAG+TGG 0.500434 5_1:-64753184 None:intergenic
TTCGTCATCATTGTGCTTGG+TGG 0.500444 5_1:-64752501 None:intergenic
CTAGGTACCATTGCTAGGTC+TGG 0.502477 5_1:+64752368 Msa0744090:CDS
GAAGAGAAGAAGGAAGAGGA+GGG 0.502813 5_1:+64752761 Msa0744090:CDS
AGAGAGAGTTGCAGAGTGTG+AGG 0.503557 5_1:-64751116 None:intergenic
GTGGGTCATTTACTGTGACC+AGG 0.504199 5_1:+64752549 Msa0744090:CDS
GATACTACTGGTGAAGCTCT+TGG 0.506627 5_1:+64752572 Msa0744090:CDS
TCTCCTTGCTGTTTAGTGAC+TGG 0.506819 5_1:+64753784 Msa0744090:CDS
TTTCCTCAGCTCCTCCATGA+TGG 0.507054 5_1:-64753923 None:intergenic
CTTGAGAAGCTTAGGAAGAA+GGG 0.508184 5_1:+64753523 Msa0744090:CDS
CAAGGTGATCAAGGAGGTGT+TGG 0.509412 5_1:+64753717 Msa0744090:CDS
TTCCTAAGCTTCTCAAGGAA+GGG 0.510661 5_1:-64753517 None:intergenic
TCCTAAGCTTCTCAAGGAAG+GGG 0.515007 5_1:-64753516 None:intergenic
AGCTTCACCAGTAGTATCCC+TGG 0.516220 5_1:-64752567 None:intergenic
CTTCATGATCCTCTCCATGT+TGG 0.521693 5_1:-64753824 None:intergenic
TGAGGACGAGGAAGAGAAGA+AGG 0.523115 5_1:+64752751 Msa0744090:CDS
TGCTGACATGCCACCATTGG+AGG 0.530142 5_1:+64754119 Msa0744090:CDS
ATCCTGTTGCCAAAAGTGTT+GGG 0.532827 5_1:-64754042 None:intergenic
ATTCACAGGATGCTCAAGCT+TGG 0.534491 5_1:+64754063 Msa0744090:CDS
TCAGCATCAGCTTCCTCCAA+TGG 0.535356 5_1:-64754132 None:intergenic
CATTGCTAGGTCTGGTACCA+AGG 0.535688 5_1:+64752376 Msa0744090:CDS
TTAAGGAGGTGTCTAATGAA+TGG 0.538054 5_1:+64752840 Msa0744090:CDS
TACTGGTGAAGCTCTTGGTA+GGG 0.540570 5_1:+64752577 Msa0744090:CDS
TAGGTAAACAATAGCTACGC+TGG 0.543004 5_1:-64754311 None:intergenic
TTCATGGAAGCTATAGCTGC+TGG 0.543301 5_1:+64752401 Msa0744090:CDS
AATCCTGTTGCCAAAAGTGT+TGG 0.544511 5_1:-64754043 None:intergenic
TGATGCTGACATGCCACCAT+TGG 0.545200 5_1:+64754116 Msa0744090:CDS
TTCTCTAAGAACTTGAAGCT+GGG 0.547307 5_1:+64753322 Msa0744090:CDS
GGTCAGCTCAAGGAATTTGA+GGG 0.548038 5_1:+64753592 Msa0744090:CDS
GTGTGGGAGTCCCAAGCTGG+TGG 0.550695 5_1:+64752530 Msa0744090:CDS
CTGTTCGTCATCATTGTGCT+TGG 0.552015 5_1:-64752504 None:intergenic
TTAACAAAGCTAAGATACTC+AGG 0.554583 5_1:-64753136 None:intergenic
ATAATGTGAATGAACAGCTC+TGG 0.554976 5_1:-64752165 None:intergenic
TAAGGTCATCAGGAAGAACT+TGG 0.555403 5_1:+64753228 Msa0744090:CDS
CCTTCTTCCTAAGCTTCTCA+AGG 0.555668 5_1:-64753522 None:intergenic
CAGTAAATGACCCACCAGCT+TGG 0.561388 5_1:-64752541 None:intergenic
CTACTGGTGAAGCTCTTGGT+AGG 0.561530 5_1:+64752576 Msa0744090:CDS
GGAAACGTGCTGATGCTGAC+AGG 0.562915 5_1:+64753941 Msa0744090:CDS
TAGTGACTGGTGAGTATGGT+TGG 0.563826 5_1:+64753797 Msa0744090:CDS
GGACTATGTTACCAGGATGA+AGG 0.567325 5_1:+64753435 Msa0744090:CDS
GATTTCTGACGATGAGGACG+AGG 0.568643 5_1:+64752739 Msa0744090:CDS
TCTTGAGGAACGCCGTCTGA+AGG 0.568654 5_1:+64752643 Msa0744090:CDS
CAAAAGTGTTGGGCTCATCA+AGG 0.569013 5_1:-64754032 None:intergenic
AGAGGGAAGCAAGATGGAAG+AGG 0.571151 5_1:+64754158 Msa0744090:CDS
CAAGGAGGTGTTGGGTGACA+AGG 0.575150 5_1:+64753726 Msa0744090:CDS
GGTAACATAGTCCTTGAGGC+TGG 0.577318 5_1:-64753425 None:intergenic
GGGATATGAAGTGATTTACA+TGG 0.578493 5_1:+64753543 Msa0744090:CDS
CCTCCATGATGGGATTCTCA+GGG 0.578771 5_1:-64753912 None:intergenic
AGCAAGGAGAATCGACAACT+CGG 0.578868 5_1:-64753771 None:intergenic
ACAACCTAGGTACCATTGCT+AGG 0.579010 5_1:+64752363 Msa0744090:CDS
TGTCGGTCAAGCCCTCAAAA+CGG 0.582332 5_1:-64752122 None:intergenic
GCAGATTTGGTGAACAACCT+AGG 0.583680 5_1:+64752350 Msa0744090:intron
AGCAGAAGCCTATTTGGATG+AGG 0.584932 5_1:+64752876 Msa0744090:CDS
ACTGGTGAAGCTCTTGGTAG+GGG 0.586981 5_1:+64752578 Msa0744090:CDS
GAAGTTGATTGATCTCAGCC+TGG 0.587212 5_1:-64751228 None:intergenic
CAGACCTAGCAATGGTACCT+AGG 0.590700 5_1:-64752367 None:intergenic
CATCACCACTCTTGGTGGAG+TGG 0.592725 5_1:-64753396 None:intergenic
TAAGGTTGAGGAAGTAGACG+AGG 0.592744 5_1:+64752784 Msa0744090:CDS
TGGGTCATTTACTGTGACCA+GGG 0.596558 5_1:+64752550 Msa0744090:CDS
CAACCCTGAGAATCCCATCA+TGG 0.597286 5_1:+64753909 Msa0744090:CDS
ATCCCATCATGGAGGAGCTG+AGG 0.597622 5_1:+64753920 Msa0744090:CDS
GTATGCTGTTGGTCAGCTCA+AGG 0.599835 5_1:+64753582 Msa0744090:CDS
GAAGTTCGACAATCTTTGCA+AGG 0.601872 5_1:+64753699 Msa0744090:CDS
GAAGCTGATGCTGATGCAGA+GGG 0.602230 5_1:+64754141 Msa0744090:CDS
TGATGCAGAGGGAAGCAAGA+TGG 0.604134 5_1:+64754152 Msa0744090:CDS
CAGGAATGACAAATCTGTGA+AGG 0.605359 5_1:+64753960 Msa0744090:CDS
TCCTGGTAACATAGTCCTTG+AGG 0.608835 5_1:-64753429 None:intergenic
TAGTGTCTGCAACTAAAGAA+GGG 0.609080 5_1:+64753623 Msa0744090:CDS
GCCTCAAGGACTATGTTACC+AGG 0.610223 5_1:+64753428 Msa0744090:CDS
CATGTCAAGCAAGAAGACAA+TGG 0.611061 5_1:+64753882 Msa0744090:CDS
CAATAACCTTCTCAGCAACA+AGG 0.612540 5_1:-64752475 None:intergenic
TATGTGTGGGAGTCCCAAGC+TGG 0.615041 5_1:+64752527 Msa0744090:CDS
AGCTTTGAGGGATAGCAGCA+TGG 0.615872 5_1:+64753852 Msa0744090:CDS
AATAACTCTCATCCTAAAGG+AGG 0.618093 5_1:+64752607 Msa0744090:CDS
AGGTAAACAATAGCTACGCT+GGG 0.618284 5_1:-64754310 None:intergenic
GCTTGGTCTTAGCATTGATG+AGG 0.619021 5_1:+64754080 Msa0744090:CDS
CAACATGGAGAGGATCATGA+AGG 0.620851 5_1:+64753825 Msa0744090:CDS
GTTGAAACTTGACGAGAGTG+AGG 0.621123 5_1:+64753645 Msa0744090:CDS
CTATTGTTTAGGAAGGTGTG+AGG 0.624521 5_1:+64754203 Msa0744090:three_prime_UTR
ACTGTGACCAGGGATACTAC+TGG 0.626949 5_1:+64752560 Msa0744090:CDS
GGATCAACTTGAGTATCTTG+AGG 0.629396 5_1:+64752628 Msa0744090:CDS
TAAGGGTATTGTGGACTCTG+AGG 0.633755 5_1:+64753156 Msa0744090:CDS
AGGTACCACTCCACCAAGAG+TGG 0.636721 5_1:+64753391 Msa0744090:CDS
GCAATTGATGAGTATGCTGT+TGG 0.641021 5_1:+64753571 Msa0744090:CDS
GTATGGTTGGACTGCCAACA+TGG 0.641083 5_1:+64753810 Msa0744090:CDS
GAAAGAGATTTCTGACGATG+AGG 0.644456 5_1:+64752733 Msa0744090:CDS
TCTTAACCAAGTCCTTCAGA+CGG 0.644789 5_1:-64752655 None:intergenic
TGTGGGAGTCCCAAGCTGGT+GGG 0.646830 5_1:+64752531 Msa0744090:CDS
GACACACCAAAACTTACGAT+AGG 0.650905 5_1:-64754330 None:intergenic
GCATCAGCTTCCTCCAATGG+TGG 0.651686 5_1:-64754129 None:intergenic
AAGGTGATCAAGGAGGTGTT+GGG 0.654251 5_1:+64753718 Msa0744090:CDS
TGATGACATGACCAGCCTCA+AGG 0.657377 5_1:+64753414 Msa0744090:CDS
CCTAAGCTTCTCAAGGAAGG+GGG 0.664638 5_1:-64753515 None:intergenic
GTTGGACTGCCAACATGGAG+AGG 0.668192 5_1:+64753815 Msa0744090:CDS
TATGTTACCAGGATGAAGGA+AGG 0.670222 5_1:+64753439 Msa0744090:CDS
GGAAGCTGATGCTGATGCAG+AGG 0.671926 5_1:+64754140 Msa0744090:CDS
AGTTGTCCATGATGAAAACA+CGG 0.681053 5_1:-64753099 None:intergenic
TCACCAGTCACTAAACAGCA+AGG 0.682332 5_1:-64753787 None:intergenic
GAAGCCAGAGGAGATTACAA+AGG 0.683556 5_1:+64752898 Msa0744090:CDS
CTTGAAGCTGGGTATCCATG+AGG 0.697436 5_1:+64753333 Msa0744090:CDS
ATGATGACGAACAGTATGTG+TGG 0.698166 5_1:+64752513 Msa0744090:CDS
CTTGGTACCAGACCTAGCAA+TGG 0.700707 5_1:-64752375 None:intergenic
TTTCATCATGGACAACTGTG+AGG 0.702798 5_1:+64753105 Msa0744090:CDS
CCCTGAGAATCCCATCATGG+AGG 0.716906 5_1:+64753912 Msa0744090:CDS
TATTTGGATGAGGAAGCCAG+AGG 0.740409 5_1:+64752886 Msa0744090:CDS
TGATGACGAACAGTATGTGT+GGG 0.740423 5_1:+64752514 Msa0744090:CDS
TCTTTGCAAGGTGATCAAGG+AGG 0.803604 5_1:+64753711 Msa0744090:CDS
TGTCCATGATGAAAACACGG+CGG 0.827708 5_1:-64753096 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATTCAATTTCAATTT+AGG - chr5_1:64751728-64751747 None:intergenic 10.0%
!!! TTGTTTTTAATTTTGAATTT+TGG + chr5_1:64754252-64754271 Msa0744090:three_prime_UTR 10.0%
!! AATTTGTATCAAAATATAAA+AGG - chr5_1:64754380-64754399 None:intergenic 10.0%
!!! TGGATTATTTTTTCAATTTT+AGG + chr5_1:64751448-64751467 Msa0744090:intron 15.0%
!!! GGATTATTTTTTCAATTTTA+GGG + chr5_1:64751449-64751468 Msa0744090:intron 15.0%
!! TTAATTGATTATATACTCTT+AGG + chr5_1:64751478-64751497 Msa0744090:intron 15.0%
!! TAATTGATTATATACTCTTA+GGG + chr5_1:64751479-64751498 Msa0744090:intron 15.0%
!!! AAATTGAATTTTAATTAGTC+CGG + chr5_1:64751734-64751753 Msa0744090:intron 15.0%
!! ATGAATGATATTGATATAAT+CGG + chr5_1:64751828-64751847 Msa0744090:intron 15.0%
!! ACTTTCATTCATATAATTAA+AGG - chr5_1:64751886-64751905 None:intergenic 15.0%
!!! TCTAATACTTTGAAATATTA+GGG + chr5_1:64751993-64752012 Msa0744090:intron 15.0%
!!! TCTTTTGTTATCGTTTTTAT+TGG + chr5_1:64751428-64751447 Msa0744090:intron 20.0%
!!! ATGATTTTTTAGTCATGTTT+AGG + chr5_1:64751578-64751597 Msa0744090:intron 20.0%
!! AAAAAATTGATCACGTAATA+AGG - chr5_1:64751777-64751796 None:intergenic 20.0%
!!! GTCTAATACTTTGAAATATT+AGG + chr5_1:64751992-64752011 Msa0744090:intron 20.0%
!!! TTTTATTAGATGCAATTTTC+TGG + chr5_1:64754286-64754305 Msa0744090:three_prime_UTR 20.0%
!!! CAATACTTTTTACAGTAACA+AGG + chr5_1:64751264-64751283 Msa0744090:CDS 25.0%
! TTTATTAGGGTTCGATTATT+AGG + chr5_1:64751361-64751380 Msa0744090:intron 25.0%
! TTATTAGGGTTCGATTATTA+GGG + chr5_1:64751362-64751381 Msa0744090:intron 25.0%
!! ATTATATACTCTTAGGGTTT+TGG + chr5_1:64751485-64751504 Msa0744090:intron 25.0%
! ACATGACTAAAAAATCATCA+CGG - chr5_1:64751576-64751595 None:intergenic 25.0%
! ATTGTGATGAATGTTCTATA+CGG + chr5_1:64751627-64751646 Msa0744090:intron 25.0%
!!! ATACTTTGAAATATTAGGGT+TGG + chr5_1:64751997-64752016 Msa0744090:intron 25.0%
!!! TACTTTGAAATATTAGGGTT+GGG + chr5_1:64751998-64752017 Msa0744090:intron 25.0%
! TAAAATAACTCTCATCCTAA+AGG + chr5_1:64752604-64752623 Msa0744090:CDS 25.0%
! GAAGAAAAAGAAGAAGATTA+AGG + chr5_1:64752823-64752842 Msa0744090:CDS 25.0%
! AATGACATTTACTACATTAC+CGG + chr5_1:64753466-64753485 Msa0744090:CDS 25.0%
! TGAAGTAGTTACTATTGTTT+AGG + chr5_1:64754192-64754211 Msa0744090:three_prime_UTR 25.0%
!!! GAAAGTGTTTTGTTTTGTTG+TGG - chr5_1:64751154-64751173 None:intergenic 30.0%
AACAACAACAACAACAACAA+CGG - chr5_1:64751544-64751563 None:intergenic 30.0%
!! ATCGGCACTTTAATTTTTGA+AGG + chr5_1:64751846-64751865 Msa0744090:intron 30.0%
! AAATATTAGGGTTGGGTTTT+AGG + chr5_1:64752005-64752024 Msa0744090:intron 30.0%
! GCATGATGATTTTATTGTTG+TGG + chr5_1:64752040-64752059 Msa0744090:intron 30.0%
TATTGTTCTGATTCTTGTGT+TGG + chr5_1:64752070-64752089 Msa0744090:intron 30.0%
!! AATGATAGTCAAAGTGTTGT+TGG - chr5_1:64752202-64752221 None:intergenic 30.0%
ACTTTGACTATCATTGATAG+TGG + chr5_1:64752207-64752226 Msa0744090:CDS 30.0%
!! TGTTTTTATGAGCCAGAAAT+TGG + chr5_1:64752263-64752282 Msa0744090:intron 30.0%
! TCTGTTTTATGTTGCAGATT+TGG + chr5_1:64752337-64752356 Msa0744090:intron 30.0%
TTAGCTATCCAATTTCTCTT+TGG + chr5_1:64752693-64752712 Msa0744090:CDS 30.0%
TAGCTATCCAATTTCTCTTT+GGG + chr5_1:64752694-64752713 Msa0744090:CDS 30.0%
GAAAAAGAAGAAGATTAAGG+AGG + chr5_1:64752826-64752845 Msa0744090:CDS 30.0%
TTTGTGTCAAAGAGATCAAA+AGG - chr5_1:64753046-64753065 None:intergenic 30.0%
TTAACAAAGCTAAGATACTC+AGG - chr5_1:64753139-64753158 None:intergenic 30.0%
!! TGAGTATCTTAGCTTTGTTA+AGG + chr5_1:64753138-64753157 Msa0744090:CDS 30.0%
!! GAGTATCTTAGCTTTGTTAA+GGG + chr5_1:64753139-64753158 Msa0744090:CDS 30.0%
ATCTCTCTTGAAATGTTAAG+TGG - chr5_1:64753187-64753206 None:intergenic 30.0%
!! AGACTACAACAAGTTTTATG+AGG + chr5_1:64753297-64753316 Msa0744090:CDS 30.0%
TGAGGATGAAAAGAAAAAGA+TGG + chr5_1:64753663-64753682 Msa0744090:CDS 30.0%
GTAGTTACTATTGTTTAGGA+AGG + chr5_1:64754196-64754215 Msa0744090:three_prime_UTR 30.0%
! TGTTTACCTATCGTAAGTTT+TGG + chr5_1:64754324-64754343 Msa0744090:three_prime_UTR 30.0%
CTTCTGTGCATAATTAACTA+AGG + chr5_1:64754409-64754428 Msa0744090:three_prime_UTR 30.0%
GAAGAAGAAGAAGCTTACAT+CGG - chr5_1:64751323-64751342 None:intergenic 35.0%
!! TATACTCTTAGGGTTTTGGT+TGG + chr5_1:64751489-64751508 Msa0744090:intron 35.0%
GGATTGATATCAATACAAGC+CGG - chr5_1:64751756-64751775 None:intergenic 35.0%
! TTTGGATAAGATCCGTTTTG+AGG + chr5_1:64752110-64752129 Msa0744090:CDS 35.0%
! TTGGATAAGATCCGTTTTGA+GGG + chr5_1:64752111-64752130 Msa0744090:CDS 35.0%
ATAATGTGAATGAACAGCTC+TGG - chr5_1:64752168-64752187 None:intergenic 35.0%
!! ACTATCATTGATAGTGGCAT+TGG + chr5_1:64752213-64752232 Msa0744090:CDS 35.0%
CTACTGCATAAACCAATTTC+TGG - chr5_1:64752278-64752297 None:intergenic 35.0%
TATAGCTTCCATGAATTCCT+TGG - chr5_1:64752396-64752415 None:intergenic 35.0%
AATAACTCTCATCCTAAAGG+AGG + chr5_1:64752607-64752626 Msa0744090:CDS 35.0%
TTCTCAACCCAAAGAGAAAT+TGG - chr5_1:64752704-64752723 None:intergenic 35.0%
!! TTAAGGAGGTGTCTAATGAA+TGG + chr5_1:64752840-64752859 Msa0744090:CDS 35.0%
ACATACAGCTTGATGTTGTT+GGG - chr5_1:64753076-64753095 None:intergenic 35.0%
AGTTGTCCATGATGAAAACA+CGG - chr5_1:64753102-64753121 None:intergenic 35.0%
!! TAGCTTTGTTAAGGGTATTG+TGG + chr5_1:64753147-64753166 Msa0744090:CDS 35.0%
TCAACAGAACAAGATCCTTA+AGG + chr5_1:64753210-64753229 Msa0744090:CDS 35.0%
!! CTTTGAAATTGCTGAGAACA+AGG + chr5_1:64753273-64753292 Msa0744090:CDS 35.0%
! TTTCTCTAAGAACTTGAAGC+TGG + chr5_1:64753321-64753340 Msa0744090:CDS 35.0%
! TTCTCTAAGAACTTGAAGCT+GGG + chr5_1:64753322-64753341 Msa0744090:CDS 35.0%
!!! TCTTGTTTTGAGAATCCTCA+TGG - chr5_1:64753351-64753370 None:intergenic 35.0%
GGGATATGAAGTGATTTACA+TGG + chr5_1:64753543-64753562 Msa0744090:CDS 35.0%
TAGTGTCTGCAACTAAAGAA+GGG + chr5_1:64753623-64753642 Msa0744090:CDS 35.0%
GAAAAAGATGGAAGAACAGA+AGG + chr5_1:64753675-64753694 Msa0744090:CDS 35.0%
CTCTGCGAAAAAAACCAGAT+CGG + chr5_1:64751177-64751196 Msa0744090:five_prime_UTR 40.0%
GAAAAAAACCAGATCGGCAA+TGG + chr5_1:64751183-64751202 Msa0744090:exon 40.0%
GTGTTGGAATGTTGTGTTGT+AGG + chr5_1:64752086-64752105 Msa0744090:intron 40.0%
GAATGTTGTGTTGTAGGCTT+TGG + chr5_1:64752092-64752111 Msa0744090:intron 40.0%
! AGAATCAAGCTTGCTCTTGT+CGG - chr5_1:64752142-64752161 None:intergenic 40.0%
!! AAAGTGTTGTTGGTCTTGTC+AGG - chr5_1:64752192-64752211 None:intergenic 40.0%
! AAACGTTAGCTTACCAGCTT+TGG - chr5_1:64752244-64752263 None:intergenic 40.0%
GTGAGTATGATTGGACAGTT+TGG + chr5_1:64752431-64752450 Msa0744090:CDS 40.0%
!! ATGATTGGACAGTTTGGTGT+TGG + chr5_1:64752437-64752456 Msa0744090:CDS 40.0%
CAATAACCTTCTCAGCAACA+AGG - chr5_1:64752478-64752497 None:intergenic 40.0%
! ATGATGACGAACAGTATGTG+TGG + chr5_1:64752513-64752532 Msa0744090:CDS 40.0%
! TGATGACGAACAGTATGTGT+GGG + chr5_1:64752514-64752533 Msa0744090:CDS 40.0%
!! ACTCAAGTTGATCCTCCTTT+AGG - chr5_1:64752622-64752641 None:intergenic 40.0%
GGATCAACTTGAGTATCTTG+AGG + chr5_1:64752628-64752647 Msa0744090:CDS 40.0%
TCTTAACCAAGTCCTTCAGA+CGG - chr5_1:64752658-64752677 None:intergenic 40.0%
GAAAGAGATTTCTGACGATG+AGG + chr5_1:64752733-64752752 Msa0744090:CDS 40.0%
AGTAGACGAGGAGAAAGAAA+AGG + chr5_1:64752796-64752815 Msa0744090:CDS 40.0%
GGTGTCTAATGAATGGTCTT+TGG + chr5_1:64752847-64752866 Msa0744090:CDS 40.0%
TGAACAAGCAGAAGCCTATT+TGG + chr5_1:64752870-64752889 Msa0744090:CDS 40.0%
TCATCCTTTGTAATCTCCTC+TGG - chr5_1:64752905-64752924 None:intergenic 40.0%
ACAAGAGTCTCACCAATGAT+TGG + chr5_1:64752939-64752958 Msa0744090:CDS 40.0%
CAAGAGTCTCACCAATGATT+GGG + chr5_1:64752940-64752959 Msa0744090:CDS 40.0%
CAAATGCTCTTCCCAATCAT+TGG - chr5_1:64752954-64752973 None:intergenic 40.0%
!! CAATGATTGGGAAGAGCATT+TGG + chr5_1:64752952-64752971 Msa0744090:CDS 40.0%
TGTTAAGCACTTCTCTGTTG+AGG + chr5_1:64752976-64752995 Msa0744090:CDS 40.0%
GTTAAGCACTTCTCTGTTGA+GGG + chr5_1:64752977-64752996 Msa0744090:CDS 40.0%
!! AGATCAAAAGGTGCTCTCTT+GGG - chr5_1:64753034-64753053 None:intergenic 40.0%
GACATACAGCTTGATGTTGT+TGG - chr5_1:64753077-64753096 None:intergenic 40.0%
TTTCATCATGGACAACTGTG+AGG + chr5_1:64753105-64753124 Msa0744090:CDS 40.0%
ACAAGATCCTTAAGGTCATC+AGG + chr5_1:64753218-64753237 Msa0744090:CDS 40.0%
AGTTCTTCCTGATGACCTTA+AGG - chr5_1:64753228-64753247 None:intergenic 40.0%
TAAGGTCATCAGGAAGAACT+TGG + chr5_1:64753228-64753247 Msa0744090:CDS 40.0%
TATGTTACCAGGATGAAGGA+AGG + chr5_1:64753439-64753458 Msa0744090:CDS 40.0%
AACAGCTTTCTTGCTTTCAC+CGG - chr5_1:64753488-64753507 None:intergenic 40.0%
TTCCTAAGCTTCTCAAGGAA+GGG - chr5_1:64753520-64753539 None:intergenic 40.0%
CTTGAGAAGCTTAGGAAGAA+GGG + chr5_1:64753523-64753542 Msa0744090:CDS 40.0%
GCAATTGATGAGTATGCTGT+TGG + chr5_1:64753571-64753590 Msa0744090:CDS 40.0%
CTAGTGTCTGCAACTAAAGA+AGG + chr5_1:64753622-64753641 Msa0744090:CDS 40.0%
GAAGTTCGACAATCTTTGCA+AGG + chr5_1:64753699-64753718 Msa0744090:CDS 40.0%
CAATCTTTGCAAGGTGATCA+AGG + chr5_1:64753708-64753727 Msa0744090:CDS 40.0%
TGTTTAGTGACTGGTGAGTA+TGG + chr5_1:64753793-64753812 Msa0744090:CDS 40.0%
CATGTCAAGCAAGAAGACAA+TGG + chr5_1:64753882-64753901 Msa0744090:CDS 40.0%
CAGGAATGACAAATCTGTGA+AGG + chr5_1:64753960-64753979 Msa0744090:CDS 40.0%
!! ATCCTGTTGCCAAAAGTGTT+GGG - chr5_1:64754045-64754064 None:intergenic 40.0%
! AATCCTGTTGCCAAAAGTGT+TGG - chr5_1:64754046-64754065 None:intergenic 40.0%
! CTATTGTTTAGGAAGGTGTG+AGG + chr5_1:64754203-64754222 Msa0744090:three_prime_UTR 40.0%
AGGTAAACAATAGCTACGCT+GGG - chr5_1:64754313-64754332 None:intergenic 40.0%
TAGGTAAACAATAGCTACGC+TGG - chr5_1:64754314-64754333 None:intergenic 40.0%
GACACACCAAAACTTACGAT+AGG - chr5_1:64754333-64754352 None:intergenic 40.0%
AAAAACCAGATCGGCAATGG+CGG + chr5_1:64751186-64751205 Msa0744090:exon 45.0%
! GAAGTTGATTGATCTCAGCC+TGG - chr5_1:64751231-64751250 None:intergenic 45.0%
!!! ACTCTTAGGGTTTTGGTTGG+TGG + chr5_1:64751492-64751511 Msa0744090:intron 45.0%
!! TTTGGTTGGTGGCGTTGTTT+AGG + chr5_1:64751503-64751522 Msa0744090:intron 45.0%
!! GCAGATTTGGTGAACAACCT+AGG + chr5_1:64752350-64752369 Msa0744090:intron 45.0%
ACAACCTAGGTACCATTGCT+AGG + chr5_1:64752363-64752382 Msa0744090:CDS 45.0%
GTCTGGTACCAAGGAATTCA+TGG + chr5_1:64752385-64752404 Msa0744090:CDS 45.0%
TTCATGGAAGCTATAGCTGC+TGG + chr5_1:64752401-64752420 Msa0744090:CDS 45.0%
!! GGTGCTGATGTGAGTATGAT+TGG + chr5_1:64752422-64752441 Msa0744090:CDS 45.0%
TGCTTACCTTGTTGCTGAGA+AGG + chr5_1:64752469-64752488 Msa0744090:CDS 45.0%
TTCGTCATCATTGTGCTTGG+TGG - chr5_1:64752504-64752523 None:intergenic 45.0%
CTGTTCGTCATCATTGTGCT+TGG - chr5_1:64752507-64752526 None:intergenic 45.0%
AGTAAATGACCCACCAGCTT+GGG - chr5_1:64752543-64752562 None:intergenic 45.0%
TGGGTCATTTACTGTGACCA+GGG + chr5_1:64752550-64752569 Msa0744090:CDS 45.0%
GATACTACTGGTGAAGCTCT+TGG + chr5_1:64752572-64752591 Msa0744090:CDS 45.0%
TACTGGTGAAGCTCTTGGTA+GGG + chr5_1:64752577-64752596 Msa0744090:CDS 45.0%
GAAGAGAAGAAGGAAGAGGA+GGG + chr5_1:64752761-64752780 Msa0744090:CDS 45.0%
TAAGGTTGAGGAAGTAGACG+AGG + chr5_1:64752784-64752803 Msa0744090:CDS 45.0%
AGCAGAAGCCTATTTGGATG+AGG + chr5_1:64752876-64752895 Msa0744090:CDS 45.0%
! TCTGGCTTCCTCATCCAAAT+AGG - chr5_1:64752887-64752906 None:intergenic 45.0%
TATTTGGATGAGGAAGCCAG+AGG + chr5_1:64752886-64752905 Msa0744090:CDS 45.0%
GAAGCCAGAGGAGATTACAA+AGG + chr5_1:64752898-64752917 Msa0744090:CDS 45.0%
TGAGGGTCAGTTGGAGTTTA+AGG + chr5_1:64752994-64753013 Msa0744090:CDS 45.0%
!! GAGATCAAAAGGTGCTCTCT+TGG - chr5_1:64753035-64753054 None:intergenic 45.0%
TGTCCATGATGAAAACACGG+CGG - chr5_1:64753099-64753118 None:intergenic 45.0%
!! TAAGGGTATTGTGGACTCTG+AGG + chr5_1:64753156-64753175 Msa0744090:CDS 45.0%
!! CTAAGCTTGCTGATTTGCTC+AGG + chr5_1:64753371-64753390 Msa0744090:CDS 45.0%
TCCTGGTAACATAGTCCTTG+AGG - chr5_1:64753432-64753451 None:intergenic 45.0%
GGACTATGTTACCAGGATGA+AGG + chr5_1:64753435-64753454 Msa0744090:CDS 45.0%
ATTCTGTCCTTCCTTCATCC+TGG - chr5_1:64753449-64753468 None:intergenic 45.0%
TCCTAAGCTTCTCAAGGAAG+GGG - chr5_1:64753519-64753538 None:intergenic 45.0%
CTTCCTAAGCTTCTCAAGGA+AGG - chr5_1:64753521-64753540 None:intergenic 45.0%
CCTTCTTCCTAAGCTTCTCA+AGG - chr5_1:64753525-64753544 None:intergenic 45.0%
CCTTGAGAAGCTTAGGAAGA+AGG + chr5_1:64753522-64753541 Msa0744090:CDS 45.0%
TGGTCAGCTCAAGGAATTTG+AGG + chr5_1:64753591-64753610 Msa0744090:CDS 45.0%
GGTCAGCTCAAGGAATTTGA+GGG + chr5_1:64753592-64753611 Msa0744090:CDS 45.0%
GTTGAAACTTGACGAGAGTG+AGG + chr5_1:64753645-64753664 Msa0744090:CDS 45.0%
TCTTTGCAAGGTGATCAAGG+AGG + chr5_1:64753711-64753730 Msa0744090:CDS 45.0%
!! AAGGTGATCAAGGAGGTGTT+GGG + chr5_1:64753718-64753737 Msa0744090:CDS 45.0%
AGCAAGGAGAATCGACAACT+CGG - chr5_1:64753774-64753793 None:intergenic 45.0%
!! TCTCCTTGCTGTTTAGTGAC+TGG + chr5_1:64753784-64753803 Msa0744090:CDS 45.0%
TCACCAGTCACTAAACAGCA+AGG - chr5_1:64753790-64753809 None:intergenic 45.0%
TAGTGACTGGTGAGTATGGT+TGG + chr5_1:64753797-64753816 Msa0744090:CDS 45.0%
CTTCATGATCCTCTCCATGT+TGG - chr5_1:64753827-64753846 None:intergenic 45.0%
CAACATGGAGAGGATCATGA+AGG + chr5_1:64753825-64753844 Msa0744090:CDS 45.0%
! TCATGAAGGCACAAGCTTTG+AGG + chr5_1:64753839-64753858 Msa0744090:CDS 45.0%
! CATGAAGGCACAAGCTTTGA+GGG + chr5_1:64753840-64753859 Msa0744090:CDS 45.0%
GAGACTGCTCTTCTTACTTC+TGG + chr5_1:64754003-64754022 Msa0744090:CDS 45.0%
!! CAAAAGTGTTGGGCTCATCA+AGG - chr5_1:64754035-64754054 None:intergenic 45.0%
! CTTGATGAGCCCAACACTTT+TGG + chr5_1:64754033-64754052 Msa0744090:CDS 45.0%
! CTTTTGGCAACAGGATTCAC+AGG + chr5_1:64754049-64754068 Msa0744090:CDS 45.0%
ATTCACAGGATGCTCAAGCT+TGG + chr5_1:64754063-64754082 Msa0744090:CDS 45.0%
!! GCTTGGTCTTAGCATTGATG+AGG + chr5_1:64754080-64754099 Msa0744090:CDS 45.0%
!!! TTTTTATTTTTTTGTTTATT+AGG + chr5_1:64751347-64751366 Msa0744090:intron 5.0%
!!! TTTTATTTTTTTGTTTATTA+GGG + chr5_1:64751348-64751367 Msa0744090:intron 5.0%
AGAGAGAGTTGCAGAGTGTG+AGG - chr5_1:64751119-64751138 None:intergenic 50.0%
ACAAGAGACGTTCGCTTTCC+AGG + chr5_1:64751210-64751229 Msa0744090:CDS 50.0%
TGTCGGTCAAGCCCTCAAAA+CGG - chr5_1:64752125-64752144 None:intergenic 50.0%
! GGCATTGGAATGACCAAAGC+TGG + chr5_1:64752228-64752247 Msa0744090:CDS 50.0%
CAGACCTAGCAATGGTACCT+AGG - chr5_1:64752370-64752389 None:intergenic 50.0%
CTAGGTACCATTGCTAGGTC+TGG + chr5_1:64752368-64752387 Msa0744090:CDS 50.0%
CTTGGTACCAGACCTAGCAA+TGG - chr5_1:64752378-64752397 None:intergenic 50.0%
CATTGCTAGGTCTGGTACCA+AGG + chr5_1:64752376-64752395 Msa0744090:CDS 50.0%
CAGTAAATGACCCACCAGCT+TGG - chr5_1:64752544-64752563 None:intergenic 50.0%
GTGGGTCATTTACTGTGACC+AGG + chr5_1:64752549-64752568 Msa0744090:CDS 50.0%
ACTGTGACCAGGGATACTAC+TGG + chr5_1:64752560-64752579 Msa0744090:CDS 50.0%
AGCTTCACCAGTAGTATCCC+TGG - chr5_1:64752570-64752589 None:intergenic 50.0%
CTACTGGTGAAGCTCTTGGT+AGG + chr5_1:64752576-64752595 Msa0744090:CDS 50.0%
ACTGGTGAAGCTCTTGGTAG+GGG + chr5_1:64752578-64752597 Msa0744090:CDS 50.0%
GATTTCTGACGATGAGGACG+AGG + chr5_1:64752739-64752758 Msa0744090:CDS 50.0%
TGAGGACGAGGAAGAGAAGA+AGG + chr5_1:64752751-64752770 Msa0744090:CDS 50.0%
CGAGGAAGAGAAGAAGGAAG+AGG + chr5_1:64752757-64752776 Msa0744090:CDS 50.0%
GGAAGAGAAGAAGGAAGAGG+AGG + chr5_1:64752760-64752779 Msa0744090:CDS 50.0%
GAAGAAGGAAGAGGAGGGTA+AGG + chr5_1:64752766-64752785 Msa0744090:CDS 50.0%
CTTCTCTGTTGAGGGTCAGT+TGG + chr5_1:64752985-64753004 Msa0744090:CDS 50.0%
! TGTCCGCCGTGTTTTCATCA+TGG + chr5_1:64753093-64753112 Msa0744090:CDS 50.0%
CTTGAAGCTGGGTATCCATG+AGG + chr5_1:64753333-64753352 Msa0744090:CDS 50.0%
CATGTCATCACCACTCTTGG+TGG - chr5_1:64753404-64753423 None:intergenic 50.0%
GGTCATGTCATCACCACTCT+TGG - chr5_1:64753407-64753426 None:intergenic 50.0%
TGATGACATGACCAGCCTCA+AGG + chr5_1:64753414-64753433 Msa0744090:CDS 50.0%
GGTAACATAGTCCTTGAGGC+TGG - chr5_1:64753428-64753447 None:intergenic 50.0%
GCCTCAAGGACTATGTTACC+AGG + chr5_1:64753428-64753447 Msa0744090:CDS 50.0%
CCTAAGCTTCTCAAGGAAGG+GGG - chr5_1:64753518-64753537 None:intergenic 50.0%
GTATGCTGTTGGTCAGCTCA+AGG + chr5_1:64753582-64753601 Msa0744090:CDS 50.0%
! CAAGGTGATCAAGGAGGTGT+TGG + chr5_1:64753717-64753736 Msa0744090:CDS 50.0%
GGGTGACAAGGTTGAGAAAG+TGG + chr5_1:64753738-64753757 Msa0744090:CDS 50.0%
GTATGGTTGGACTGCCAACA+TGG + chr5_1:64753810-64753829 Msa0744090:CDS 50.0%
!! AGCTTTGAGGGATAGCAGCA+TGG + chr5_1:64753852-64753871 Msa0744090:CDS 50.0%
CAACCCTGAGAATCCCATCA+TGG + chr5_1:64753909-64753928 Msa0744090:CDS 50.0%
! CCTCCATGATGGGATTCTCA+GGG - chr5_1:64753915-64753934 None:intergenic 50.0%
! TCCTCCATGATGGGATTCTC+AGG - chr5_1:64753916-64753935 None:intergenic 50.0%
TTCCTCAGCTCCTCCATGAT+GGG - chr5_1:64753925-64753944 None:intergenic 50.0%
TTTCCTCAGCTCCTCCATGA+TGG - chr5_1:64753926-64753945 None:intergenic 50.0%
! AGCCCAACACTTTTGGCAAC+AGG + chr5_1:64754040-64754059 Msa0744090:CDS 50.0%
TGATGCTGACATGCCACCAT+TGG + chr5_1:64754116-64754135 Msa0744090:CDS 50.0%
TCAGCATCAGCTTCCTCCAA+TGG - chr5_1:64754135-64754154 None:intergenic 50.0%
GAAGCTGATGCTGATGCAGA+GGG + chr5_1:64754141-64754160 Msa0744090:CDS 50.0%
TGATGCAGAGGGAAGCAAGA+TGG + chr5_1:64754152-64754171 Msa0744090:CDS 50.0%
AGAGGGAAGCAAGATGGAAG+AGG + chr5_1:64754158-64754177 Msa0744090:CDS 50.0%
TTGTTCCGCCATTGCCGATC+TGG - chr5_1:64751194-64751213 None:intergenic 55.0%
TATGTGTGGGAGTCCCAAGC+TGG + chr5_1:64752527-64752546 Msa0744090:CDS 55.0%
TCTTGAGGAACGCCGTCTGA+AGG + chr5_1:64752643-64752662 Msa0744090:CDS 55.0%
GGAAGAGGAGGGTAAGGTTG+AGG + chr5_1:64752772-64752791 Msa0744090:CDS 55.0%
AGGTACCACTCCACCAAGAG+TGG + chr5_1:64753391-64753410 Msa0744090:CDS 55.0%
CATCACCACTCTTGGTGGAG+TGG - chr5_1:64753399-64753418 None:intergenic 55.0%
CCCCCTTCCTTGAGAAGCTT+AGG + chr5_1:64753515-64753534 Msa0744090:CDS 55.0%
!! CAAGGAGGTGTTGGGTGACA+AGG + chr5_1:64753726-64753745 Msa0744090:CDS 55.0%
GTTGGACTGCCAACATGGAG+AGG + chr5_1:64753815-64753834 Msa0744090:CDS 55.0%
TTGAGGGATAGCAGCATGGC+TGG + chr5_1:64753856-64753875 Msa0744090:CDS 55.0%
CCCTGAGAATCCCATCATGG+AGG + chr5_1:64753912-64753931 Msa0744090:CDS 55.0%
ATCCCATCATGGAGGAGCTG+AGG + chr5_1:64753920-64753939 Msa0744090:CDS 55.0%
! GGAAACGTGCTGATGCTGAC+AGG + chr5_1:64753941-64753960 Msa0744090:CDS 55.0%
TGCTGACATGCCACCATTGG+AGG + chr5_1:64754119-64754138 Msa0744090:CDS 55.0%
GCATCAGCTTCCTCCAATGG+TGG - chr5_1:64754132-64754151 None:intergenic 55.0%
GGAAGCTGATGCTGATGCAG+AGG + chr5_1:64754140-64754159 Msa0744090:CDS 55.0%
TGTGGGAGTCCCAAGCTGGT+GGG + chr5_1:64752531-64752550 Msa0744090:CDS 60.0%
GGAACGCCGTCTGAAGGACT+TGG + chr5_1:64752649-64752668 Msa0744090:CDS 60.0%
GTGTGGGAGTCCCAAGCTGG+TGG + chr5_1:64752530-64752549 Msa0744090:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 64751113 64754456 64751113 ID=Msa0744090;Name=Msa0744090
chr5_1 mRNA 64751113 64754456 64751113 ID=Msa0744090-mRNA-1;Parent=Msa0744090;Name=Msa0744090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=89|1|1|1|1|1|3|268|699
chr5_1 exon 64751113 64751324 64751113 ID=Msa0744090-mRNA-1:exon:19146;Parent=Msa0744090-mRNA-1
chr5_1 exon 64752108 64752249 64752108 ID=Msa0744090-mRNA-1:exon:19147;Parent=Msa0744090-mRNA-1
chr5_1 exon 64752354 64754456 64752354 ID=Msa0744090-mRNA-1:exon:19148;Parent=Msa0744090-mRNA-1
chr5_1 five_prime_UTR 64751113 64751201 64751113 ID=Msa0744090-mRNA-1:five_prime_utr;Parent=Msa0744090-mRNA-1
chr5_1 CDS 64751202 64751324 64751202 ID=Msa0744090-mRNA-1:cds;Parent=Msa0744090-mRNA-1
chr5_1 CDS 64752108 64752249 64752108 ID=Msa0744090-mRNA-1:cds;Parent=Msa0744090-mRNA-1
chr5_1 CDS 64752354 64754188 64752354 ID=Msa0744090-mRNA-1:cds;Parent=Msa0744090-mRNA-1
chr5_1 three_prime_UTR 64754189 64754456 64754189 ID=Msa0744090-mRNA-1:three_prime_utr;Parent=Msa0744090-mRNA-1
Gene Sequence

>Msa0744090

ATGGCGGAACAAGAGACGTTCGCTTTCCAGGCTGAGATCAATCAACTTCTCAGTCTCATCATCAATACTTTTTACAGTAACAAGGAGATTTTTCTTCGTGAACTCATCAGTAACGCTTCCGATGCTTTGGATAAGATCCGTTTTGAGGGCTTGACCGACAAGAGCAAGCTTGATTCTCAGCCAGAGCTGTTCATTCACATTATTCCTGACAAGACCAACAACACTTTGACTATCATTGATAGTGGCATTGGAATGACCAAAGCTGATTTGGTGAACAACCTAGGTACCATTGCTAGGTCTGGTACCAAGGAATTCATGGAAGCTATAGCTGCTGGTGCTGATGTGAGTATGATTGGACAGTTTGGTGTTGGTTTCTACTCTGCTTACCTTGTTGCTGAGAAGGTTATTGTTACCACCAAGCACAATGATGACGAACAGTATGTGTGGGAGTCCCAAGCTGGTGGGTCATTTACTGTGACCAGGGATACTACTGGTGAAGCTCTTGGTAGGGGAACTAAAATAACTCTCATCCTAAAGGAGGATCAACTTGAGTATCTTGAGGAACGCCGTCTGAAGGACTTGGTTAAGAAGCATTCTGAATTTATTAGCTATCCAATTTCTCTTTGGGTTGAGAAGACTATTGAGAAAGAGATTTCTGACGATGAGGACGAGGAAGAGAAGAAGGAAGAGGAGGGTAAGGTTGAGGAAGTAGACGAGGAGAAAGAAAAGGAAGAGAAGAAAAAGAAGAAGATTAAGGAGGTGTCTAATGAATGGTCTTTGGTGAACAAGCAGAAGCCTATTTGGATGAGGAAGCCAGAGGAGATTACAAAGGATGAGTATGCTGCTTTTTACAAGAGTCTCACCAATGATTGGGAAGAGCATTTGGCTGTTAAGCACTTCTCTGTTGAGGGTCAGTTGGAGTTTAAGGCTGTTCTCTTTGTGCCCAAGAGAGCACCTTTTGATCTCTTTGACACAAAGAAGAAGCCCAACAACATCAAGCTGTATGTCCGCCGTGTTTTCATCATGGACAACTGTGAGGAGTTGATGCCTGAGTATCTTAGCTTTGTTAAGGGTATTGTGGACTCTGAGGATCTTCCACTTAACATTTCAAGAGAGATGCTTCAACAGAACAAGATCCTTAAGGTCATCAGGAAGAACTTGGTGAAGAAGTGTCTTGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAAGACTACAACAAGTTTTATGAGGCTTTCTCTAAGAACTTGAAGCTGGGTATCCATGAGGATTCTCAAAACAAGACTAAGCTTGCTGATTTGCTCAGGTACCACTCCACCAAGAGTGGTGATGACATGACCAGCCTCAAGGACTATGTTACCAGGATGAAGGAAGGACAGAATGACATTTACTACATTACCGGTGAAAGCAAGAAAGCTGTTGAGAATTCCCCCTTCCTTGAGAAGCTTAGGAAGAAGGGATATGAAGTGATTTACATGGTTGACGCAATTGATGAGTATGCTGTTGGTCAGCTCAAGGAATTTGAGGGTAAGAAGCTAGTGTCTGCAACTAAAGAAGGGTTGAAACTTGACGAGAGTGAGGATGAAAAGAAAAAGATGGAAGAACAGAAGGAGAAGTTCGACAATCTTTGCAAGGTGATCAAGGAGGTGTTGGGTGACAAGGTTGAGAAAGTGGTTGTTTCTGACCGAGTTGTCGATTCTCCTTGCTGTTTAGTGACTGGTGAGTATGGTTGGACTGCCAACATGGAGAGGATCATGAAGGCACAAGCTTTGAGGGATAGCAGCATGGCTGGTTACATGTCAAGCAAGAAGACAATGGAAATCAACCCTGAGAATCCCATCATGGAGGAGCTGAGGAAACGTGCTGATGCTGACAGGAATGACAAATCTGTGAAGGATCTTGTGCTCTTGCTGTTTGAGACTGCTCTTCTTACTTCTGGATTCAGCCTTGATGAGCCCAACACTTTTGGCAACAGGATTCACAGGATGCTCAAGCTTGGTCTTAGCATTGATGAGGATGCAGCAGAAGCTGATGCTGACATGCCACCATTGGAGGAAGCTGATGCTGATGCAGAGGGAAGCAAGATGGAAGAGGTCGATTAA

Protein sequence

>Msa0744090

MAEQETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFEGLTDKSKLDSQPELFIHIIPDKTNNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEAIAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDTTGEALGRGTKITLILKEDQLEYLEERRLKDLVKKHSEFISYPISLWVEKTIEKEISDDEDEEEKKEEEGKVEEVDEEKEKEEKKKKKIKEVSNEWSLVNKQKPIWMRKPEEITKDEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCEELMPEYLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNKTKLADLLRYHSTKSGDDMTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLRKKGYEVIYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKKMEEQKEKFDNLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENPIMEELRKRADADRNDKSVKDLVLLLFETALLTSGFSLDEPNTFGNRIHRMLKLGLSIDEDAAEADADMPPLEEADADAEGSKMEEVD*