AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0803300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0803300 MtrunA17_Chr5g0411231 95.833 120 5 0 1 120 1 120 2.09e-80 231
Msa0803300 MtrunA17_Chr5g0411241 85.000 120 18 0 1 120 1 120 1.57e-69 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 46 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTAATTTGTACTAAATT+TGG 0.168371 5_3:-18407366 Msa0803300:three_prime_UTR
TCACTTCTCTAGGGACAATT+TGG 0.245955 5_3:+18407427 None:intergenic
CTTGCTCTTGAGTGCAGCTT+TGG 0.250449 5_3:+18408472 None:intergenic
TCACTGCTACTCTCAATTTC+AGG 0.257468 5_3:+18407589 None:intergenic
CTCATATCATTGTGAGAATA+TGG 0.263715 5_3:-18408499 Msa0803300:exon
TGCCCTCTATCATGAATAAT+TGG 0.271303 5_3:+18408606 None:intergenic
ACATTTAACAACAACTTTCC+CGG 0.347253 5_3:+18408199 None:intergenic
TTGCTCTTGAGTGCAGCTTT+GGG 0.361214 5_3:+18408473 None:intergenic
TGTGTGGTCGGCTATGAATT+TGG 0.378336 5_3:-18407327 Msa0803300:three_prime_UTR
ACAACAACTTTCCCGGCATC+AGG 0.420737 5_3:+18408206 None:intergenic
GTTTGTAATTAGTATGTGTT+TGG 0.438400 5_3:-18407294 Msa0803300:three_prime_UTR
CCCTTGCCTGAGTCTGCATC+AGG 0.461443 5_3:+18407499 None:intergenic
GTAATGCAATAGTATGTGTT+TGG 0.464999 5_3:-18407256 Msa0803300:three_prime_UTR
GGTCCAATTATTCATGATAG+AGG 0.467428 5_3:-18408609 Msa0803300:five_prime_UTR
GGCAATGTGTTGTGCAAGAC+TGG 0.472681 5_3:-18408266 Msa0803300:CDS
AGGTTCAATTATTGAGAAAG+AGG 0.477911 5_3:-18408652 Msa0803300:five_prime_UTR
CCTTAGTGAATCACTTCTCT+AGG 0.478513 5_3:+18407417 None:intergenic
GGACTACTGGACCTGATGCC+GGG 0.478651 5_3:-18408217 Msa0803300:CDS
TTCAAGCTAATAAAATATCA+AGG 0.479076 5_3:-18407390 Msa0803300:three_prime_UTR
TACTAAATTTGGTTTATCAT+CGG 0.484979 5_3:-18407355 Msa0803300:three_prime_UTR
TGTGTTATAACTAGGACTAC+TGG 0.487878 5_3:-18408230 Msa0803300:CDS
AGGACTACTGGACCTGATGC+CGG 0.518978 5_3:-18408218 Msa0803300:CDS
CCTAGAGAAGTGATTCACTA+AGG 0.524929 5_3:-18407417 Msa0803300:three_prime_UTR
CAAAGCTGCACTCAAGAGCA+AGG 0.561178 5_3:-18408471 Msa0803300:CDS
AATGTACCAACTAGTGAATG+AGG 0.566165 5_3:+18408561 None:intergenic
TCCTGATGCAGACTCAGGCA+AGG 0.574927 5_3:-18407500 Msa0803300:CDS
GAAGGTCCTGATGCAGACTC+AGG 0.576340 5_3:-18407505 Msa0803300:CDS
CTAGAGAAGTGATTCACTAA+GGG 0.578373 5_3:-18407416 Msa0803300:three_prime_UTR
TTTATCATCGGTATTATGTG+TGG 0.580775 5_3:-18407343 Msa0803300:three_prime_UTR
GTTGGACATGTGTTATAACT+AGG 0.581816 5_3:-18408238 Msa0803300:CDS
GTCCAATTATTCATGATAGA+GGG 0.583961 5_3:-18408608 Msa0803300:five_prime_UTR
TCTGCAAGTGTGGTGAAGGA+TGG 0.591787 5_3:-18407549 Msa0803300:CDS
ACATTCTGCAAGTGTGGTGA+AGG 0.593456 5_3:-18407553 Msa0803300:CDS
TCATCGGTATTATGTGTGGT+CGG 0.598489 5_3:-18407339 Msa0803300:three_prime_UTR
CTTAGTGAATCACTTCTCTA+GGG 0.599847 5_3:+18407418 None:intergenic
ATTGAGAGTAGCAGTGACAA+TGG 0.620823 5_3:-18407583 Msa0803300:CDS
GGGAAAGTTGTTGTTAAATG+TGG 0.623206 5_3:-18408197 Msa0803300:CDS
GTGTTGTGCAAGACTGGTAA+AGG 0.626364 5_3:-18408260 Msa0803300:CDS
TATAAGAACAGTCTGAAGCA+TGG 0.629013 5_3:-18407139 Msa0803300:three_prime_UTR
CCTGATGCAGACTCAGGCAA+GGG 0.633802 5_3:-18407499 Msa0803300:CDS
TTATATGCATGCAGTGATGG+TGG 0.638654 5_3:-18407622 Msa0803300:intron
AAAGCTGCACTCAAGAGCAA+GGG 0.647133 5_3:-18408470 Msa0803300:intron
ACAACACATTGCCCAAACCC+AGG 0.649057 5_3:+18408276 None:intergenic
TGTGCAAGACTGGTAAAGGT+TGG 0.662647 5_3:-18408256 Msa0803300:CDS
AGTGAAACATTCTGCAAGTG+TGG 0.671634 5_3:-18407559 Msa0803300:CDS
GCTGTTTATGACTTTAAACG+TGG 0.704190 5_3:-18408630 Msa0803300:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCATTTTTTATATTGAAT+TGG - chr5_3:18407766-18407785 Msa0803300:intron 10.0%
!!! TTCATTTTTTATATTGAATT+GGG - chr5_3:18407767-18407786 Msa0803300:intron 10.0%
!!! TAATTAATTTGTACTAAATT+TGG - chr5_3:18408370-18408389 Msa0803300:intron 10.0%
!!! TTTCATTTTTTATATTGAAT+TGG - chr5_3:18407766-18407785 Msa0803300:intron 10.0%
!!! TTCATTTTTTATATTGAATT+GGG - chr5_3:18407767-18407786 Msa0803300:intron 10.0%
!!! TAATTAATTTGTACTAAATT+TGG - chr5_3:18408370-18408389 Msa0803300:intron 10.0%
!! AAAACTATATTGATGAAATA+AGG + chr5_3:18407319-18407338 None:intergenic 15.0%
!! AAAAAAAACTAATACTAACA+AGG + chr5_3:18408565-18408584 None:intergenic 15.0%
!! AAAACTATATTGATGAAATA+AGG + chr5_3:18407319-18407338 None:intergenic 15.0%
!! AAAAAAAACTAATACTAACA+AGG + chr5_3:18408565-18408584 None:intergenic 15.0%
!! GATTTATTTATGCATGAAAA+TGG + chr5_3:18407383-18407402 None:intergenic 20.0%
!! GTAAAATTAAAATAGGCAAA+AGG + chr5_3:18407603-18407622 None:intergenic 20.0%
!! GATGCTAGTAAAATTAAAAT+AGG + chr5_3:18407610-18407629 None:intergenic 20.0%
!!! TTTTTCAAAATCGAATGAAT+TGG - chr5_3:18407677-18407696 Msa0803300:intron 20.0%
!! ATTAACTCTTGAGATAAAAT+CGG - chr5_3:18407996-18408015 Msa0803300:intron 20.0%
!!! AATCAATTTTTTCTATCTCA+TGG - chr5_3:18408048-18408067 Msa0803300:intron 20.0%
!! TTCAAGCTAATAAAATATCA+AGG - chr5_3:18408346-18408365 Msa0803300:intron 20.0%
!!! TACTAAATTTGGTTTATCAT+CGG - chr5_3:18408381-18408400 Msa0803300:intron 20.0%
!! GATTTATTTATGCATGAAAA+TGG + chr5_3:18407383-18407402 None:intergenic 20.0%
!! GTAAAATTAAAATAGGCAAA+AGG + chr5_3:18407603-18407622 None:intergenic 20.0%
!! GATGCTAGTAAAATTAAAAT+AGG + chr5_3:18407610-18407629 None:intergenic 20.0%
!!! TTTTTCAAAATCGAATGAAT+TGG - chr5_3:18407677-18407696 Msa0803300:intron 20.0%
!! ATTAACTCTTGAGATAAAAT+CGG - chr5_3:18407996-18408015 Msa0803300:intron 20.0%
!!! AATCAATTTTTTCTATCTCA+TGG - chr5_3:18408048-18408067 Msa0803300:intron 20.0%
!! TTCAAGCTAATAAAATATCA+AGG - chr5_3:18408346-18408365 Msa0803300:intron 20.0%
!!! TACTAAATTTGGTTTATCAT+CGG - chr5_3:18408381-18408400 Msa0803300:intron 20.0%
! AATGAAACTGCAAAGTAATA+AGG + chr5_3:18407753-18407772 None:intergenic 25.0%
! AAATGAACTCTGAATCAAAT+CGG + chr5_3:18407907-18407926 None:intergenic 25.0%
! GTTTGTAATTAGTATGTGTT+TGG - chr5_3:18408442-18408461 Msa0803300:intron 25.0%
! AATGAAACTGCAAAGTAATA+AGG + chr5_3:18407753-18407772 None:intergenic 25.0%
! AAATGAACTCTGAATCAAAT+CGG + chr5_3:18407907-18407926 None:intergenic 25.0%
! GTTTGTAATTAGTATGTGTT+TGG - chr5_3:18408442-18408461 Msa0803300:intron 25.0%
!! AGCAGCAGTATTTTTCAATT+AGG - chr5_3:18407064-18407083 Msa0803300:three_prime_UTR 30.0%
AGGTTCAATTATTGAGAAAG+AGG - chr5_3:18407084-18407103 Msa0803300:three_prime_UTR 30.0%
GTCCAATTATTCATGATAGA+GGG - chr5_3:18407128-18407147 Msa0803300:three_prime_UTR 30.0%
CTCATATCATTGTGAGAATA+TGG - chr5_3:18407237-18407256 Msa0803300:three_prime_UTR 30.0%
! AAATGGAACATGAAGAGTAT+TGG + chr5_3:18407366-18407385 None:intergenic 30.0%
ATAGTTCAAGACAAAAACTC+AGG - chr5_3:18407437-18407456 Msa0803300:exon 30.0%
ACATTTAACAACAACTTTCC+CGG + chr5_3:18407540-18407559 None:intergenic 30.0%
TCAAAATCGAATGAATTGGT+TGG - chr5_3:18407681-18407700 Msa0803300:intron 30.0%
AATAAGGATCAAATCGATTG+AGG + chr5_3:18407737-18407756 None:intergenic 30.0%
ATCCGATTCAACTATTGTTA+CGG - chr5_3:18407870-18407889 Msa0803300:intron 30.0%
TACCGTAACAATAGTTGAAT+CGG + chr5_3:18407875-18407894 None:intergenic 30.0%
ACTTTGAATCAGTTTCATGT+CGG - chr5_3:18407972-18407991 Msa0803300:intron 30.0%
TTGATTGTATAAGCCTTGAA+TGG + chr5_3:18408034-18408053 None:intergenic 30.0%
ATCTAGCAGTGCAATATATA+TGG + chr5_3:18408084-18408103 None:intergenic 30.0%
TTTATCATCGGTATTATGTG+TGG - chr5_3:18408393-18408412 Msa0803300:intron 30.0%
GTAATGCAATAGTATGTGTT+TGG - chr5_3:18408480-18408499 Msa0803300:CDS 30.0%
!! GAAATTTTAAGAGACAACAG+AGG + chr5_3:18408532-18408551 None:intergenic 30.0%
!! AGCAGCAGTATTTTTCAATT+AGG - chr5_3:18407064-18407083 Msa0803300:three_prime_UTR 30.0%
AGGTTCAATTATTGAGAAAG+AGG - chr5_3:18407084-18407103 Msa0803300:three_prime_UTR 30.0%
GTCCAATTATTCATGATAGA+GGG - chr5_3:18407128-18407147 Msa0803300:three_prime_UTR 30.0%
CTCATATCATTGTGAGAATA+TGG - chr5_3:18407237-18407256 Msa0803300:three_prime_UTR 30.0%
! AAATGGAACATGAAGAGTAT+TGG + chr5_3:18407366-18407385 None:intergenic 30.0%
ATAGTTCAAGACAAAAACTC+AGG - chr5_3:18407437-18407456 Msa0803300:exon 30.0%
ACATTTAACAACAACTTTCC+CGG + chr5_3:18407540-18407559 None:intergenic 30.0%
TCAAAATCGAATGAATTGGT+TGG - chr5_3:18407681-18407700 Msa0803300:intron 30.0%
AATAAGGATCAAATCGATTG+AGG + chr5_3:18407737-18407756 None:intergenic 30.0%
ATCCGATTCAACTATTGTTA+CGG - chr5_3:18407870-18407889 Msa0803300:intron 30.0%
TACCGTAACAATAGTTGAAT+CGG + chr5_3:18407875-18407894 None:intergenic 30.0%
ACTTTGAATCAGTTTCATGT+CGG - chr5_3:18407972-18407991 Msa0803300:intron 30.0%
TTGATTGTATAAGCCTTGAA+TGG + chr5_3:18408034-18408053 None:intergenic 30.0%
ATCTAGCAGTGCAATATATA+TGG + chr5_3:18408084-18408103 None:intergenic 30.0%
TTTATCATCGGTATTATGTG+TGG - chr5_3:18408393-18408412 Msa0803300:intron 30.0%
GTAATGCAATAGTATGTGTT+TGG - chr5_3:18408480-18408499 Msa0803300:CDS 30.0%
!! GAAATTTTAAGAGACAACAG+AGG + chr5_3:18408532-18408551 None:intergenic 30.0%
GCTGTTTATGACTTTAAACG+TGG - chr5_3:18407106-18407125 Msa0803300:three_prime_UTR 35.0%
GGTCCAATTATTCATGATAG+AGG - chr5_3:18407127-18407146 Msa0803300:three_prime_UTR 35.0%
TGCCCTCTATCATGAATAAT+TGG + chr5_3:18407133-18407152 None:intergenic 35.0%
AATGTACCAACTAGTGAATG+AGG + chr5_3:18407178-18407197 None:intergenic 35.0%
! TAAACCAATAAGCTTTGTGC+AGG - chr5_3:18407408-18407427 Msa0803300:three_prime_UTR 35.0%
GTTGGACATGTGTTATAACT+AGG - chr5_3:18407498-18407517 Msa0803300:CDS 35.0%
TGTGTTATAACTAGGACTAC+TGG - chr5_3:18407506-18407525 Msa0803300:CDS 35.0%
! GGGAAAGTTGTTGTTAAATG+TGG - chr5_3:18407539-18407558 Msa0803300:CDS 35.0%
! AATGAATTGGTTGGTTCAAC+TGG - chr5_3:18407690-18407709 Msa0803300:intron 35.0%
ATCACTGCATGCATATAAGT+TGG + chr5_3:18408112-18408131 None:intergenic 35.0%
AACTTATATGCATGCAGTGA+TGG - chr5_3:18408111-18408130 Msa0803300:intron 35.0%
!! GATGGAGTTGTTCCATTTTT+AGG - chr5_3:18408205-18408224 Msa0803300:CDS 35.0%
!!! TGTTCCATTTTTAGGACTGA+AGG - chr5_3:18408213-18408232 Msa0803300:CDS 35.0%
CTTAGTGAATCACTTCTCTA+GGG + chr5_3:18408321-18408340 None:intergenic 35.0%
CTAGAGAAGTGATTCACTAA+GGG - chr5_3:18408320-18408339 Msa0803300:intron 35.0%
! TATAAGAACAGTCTGAAGCA+TGG - chr5_3:18408597-18408616 Msa0803300:five_prime_UTR 35.0%
GCTGTTTATGACTTTAAACG+TGG - chr5_3:18407106-18407125 Msa0803300:three_prime_UTR 35.0%
GGTCCAATTATTCATGATAG+AGG - chr5_3:18407127-18407146 Msa0803300:three_prime_UTR 35.0%
TGCCCTCTATCATGAATAAT+TGG + chr5_3:18407133-18407152 None:intergenic 35.0%
AATGTACCAACTAGTGAATG+AGG + chr5_3:18407178-18407197 None:intergenic 35.0%
! TAAACCAATAAGCTTTGTGC+AGG - chr5_3:18407408-18407427 Msa0803300:three_prime_UTR 35.0%
GTTGGACATGTGTTATAACT+AGG - chr5_3:18407498-18407517 Msa0803300:CDS 35.0%
TGTGTTATAACTAGGACTAC+TGG - chr5_3:18407506-18407525 Msa0803300:CDS 35.0%
! GGGAAAGTTGTTGTTAAATG+TGG - chr5_3:18407539-18407558 Msa0803300:CDS 35.0%
! AATGAATTGGTTGGTTCAAC+TGG - chr5_3:18407690-18407709 Msa0803300:intron 35.0%
ATCACTGCATGCATATAAGT+TGG + chr5_3:18408112-18408131 None:intergenic 35.0%
AACTTATATGCATGCAGTGA+TGG - chr5_3:18408111-18408130 Msa0803300:intron 35.0%
!! GATGGAGTTGTTCCATTTTT+AGG - chr5_3:18408205-18408224 Msa0803300:CDS 35.0%
!!! TGTTCCATTTTTAGGACTGA+AGG - chr5_3:18408213-18408232 Msa0803300:CDS 35.0%
CTTAGTGAATCACTTCTCTA+GGG + chr5_3:18408321-18408340 None:intergenic 35.0%
CTAGAGAAGTGATTCACTAA+GGG - chr5_3:18408320-18408339 Msa0803300:intron 35.0%
! TATAAGAACAGTCTGAAGCA+TGG - chr5_3:18408597-18408616 Msa0803300:five_prime_UTR 35.0%
CTTTCCTGCACAAAGCTTAT+TGG + chr5_3:18407415-18407434 None:intergenic 40.0%
! GTTCGATTTGAGACCATTCA+AGG - chr5_3:18408018-18408037 Msa0803300:intron 40.0%
TTATATGCATGCAGTGATGG+TGG - chr5_3:18408114-18408133 Msa0803300:intron 40.0%
TCACTGCTACTCTCAATTTC+AGG + chr5_3:18408150-18408169 None:intergenic 40.0%
ATTGAGAGTAGCAGTGACAA+TGG - chr5_3:18408153-18408172 Msa0803300:intron 40.0%
AGTGAAACATTCTGCAAGTG+TGG - chr5_3:18408177-18408196 Msa0803300:CDS 40.0%
AGGACCTTCAGTCCTAAAAA+TGG + chr5_3:18408220-18408239 None:intergenic 40.0%
! TCACTTCTCTAGGGACAATT+TGG + chr5_3:18408312-18408331 None:intergenic 40.0%
CCTTAGTGAATCACTTCTCT+AGG + chr5_3:18408322-18408341 None:intergenic 40.0%
CCTAGAGAAGTGATTCACTA+AGG - chr5_3:18408319-18408338 Msa0803300:intron 40.0%
TCATCGGTATTATGTGTGGT+CGG - chr5_3:18408397-18408416 Msa0803300:intron 40.0%
CTTTCCTGCACAAAGCTTAT+TGG + chr5_3:18407415-18407434 None:intergenic 40.0%
! GTTCGATTTGAGACCATTCA+AGG - chr5_3:18408018-18408037 Msa0803300:intron 40.0%
TTATATGCATGCAGTGATGG+TGG - chr5_3:18408114-18408133 Msa0803300:intron 40.0%
TCACTGCTACTCTCAATTTC+AGG + chr5_3:18408150-18408169 None:intergenic 40.0%
ATTGAGAGTAGCAGTGACAA+TGG - chr5_3:18408153-18408172 Msa0803300:intron 40.0%
AGTGAAACATTCTGCAAGTG+TGG - chr5_3:18408177-18408196 Msa0803300:CDS 40.0%
AGGACCTTCAGTCCTAAAAA+TGG + chr5_3:18408220-18408239 None:intergenic 40.0%
! TCACTTCTCTAGGGACAATT+TGG + chr5_3:18408312-18408331 None:intergenic 40.0%
CCTTAGTGAATCACTTCTCT+AGG + chr5_3:18408322-18408341 None:intergenic 40.0%
CCTAGAGAAGTGATTCACTA+AGG - chr5_3:18408319-18408338 Msa0803300:intron 40.0%
TCATCGGTATTATGTGTGGT+CGG - chr5_3:18408397-18408416 Msa0803300:intron 40.0%
!! AGGGCAGTTCTGACTTTTCA+AGG - chr5_3:18407147-18407166 Msa0803300:three_prime_UTR 45.0%
GCTCTACCTCATTCACTAGT+TGG - chr5_3:18407169-18407188 Msa0803300:three_prime_UTR 45.0%
TTGCTCTTGAGTGCAGCTTT+GGG + chr5_3:18407266-18407285 None:intergenic 45.0%
AAAGCTGCACTCAAGAGCAA+GGG - chr5_3:18407266-18407285 Msa0803300:three_prime_UTR 45.0%
TCAAGACAAAAACTCAGGCC+TGG - chr5_3:18407442-18407461 Msa0803300:exon 45.0%
CAAGACAAAAACTCAGGCCT+GGG - chr5_3:18407443-18407462 Msa0803300:exon 45.0%
AAAAACTCAGGCCTGGGTTT+GGG - chr5_3:18407449-18407468 Msa0803300:exon 45.0%
GTGTTGTGCAAGACTGGTAA+AGG - chr5_3:18407476-18407495 Msa0803300:CDS 45.0%
TGTGCAAGACTGGTAAAGGT+TGG - chr5_3:18407480-18407499 Msa0803300:CDS 45.0%
ACATTCTGCAAGTGTGGTGA+AGG - chr5_3:18408183-18408202 Msa0803300:CDS 45.0%
TGTGTGGTCGGCTATGAATT+TGG - chr5_3:18408409-18408428 Msa0803300:intron 45.0%
!! AGGGCAGTTCTGACTTTTCA+AGG - chr5_3:18407147-18407166 Msa0803300:three_prime_UTR 45.0%
GCTCTACCTCATTCACTAGT+TGG - chr5_3:18407169-18407188 Msa0803300:three_prime_UTR 45.0%
TTGCTCTTGAGTGCAGCTTT+GGG + chr5_3:18407266-18407285 None:intergenic 45.0%
AAAGCTGCACTCAAGAGCAA+GGG - chr5_3:18407266-18407285 Msa0803300:three_prime_UTR 45.0%
TCAAGACAAAAACTCAGGCC+TGG - chr5_3:18407442-18407461 Msa0803300:exon 45.0%
CAAGACAAAAACTCAGGCCT+GGG - chr5_3:18407443-18407462 Msa0803300:exon 45.0%
AAAAACTCAGGCCTGGGTTT+GGG - chr5_3:18407449-18407468 Msa0803300:exon 45.0%
GTGTTGTGCAAGACTGGTAA+AGG - chr5_3:18407476-18407495 Msa0803300:CDS 45.0%
TGTGCAAGACTGGTAAAGGT+TGG - chr5_3:18407480-18407499 Msa0803300:CDS 45.0%
ACATTCTGCAAGTGTGGTGA+AGG - chr5_3:18408183-18408202 Msa0803300:CDS 45.0%
TGTGTGGTCGGCTATGAATT+TGG - chr5_3:18408409-18408428 Msa0803300:intron 45.0%
!!! ATTTTTAATCTTAAATTTAT+CGG + chr5_3:18407939-18407958 None:intergenic 5.0%
!!! ATTTTTAATCTTAAATTTAT+CGG + chr5_3:18407939-18407958 None:intergenic 5.0%
CTTGCTCTTGAGTGCAGCTT+TGG + chr5_3:18407267-18407286 None:intergenic 50.0%
CAAAGCTGCACTCAAGAGCA+AGG - chr5_3:18407265-18407284 Msa0803300:three_prime_UTR 50.0%
CAAAAACTCAGGCCTGGGTT+TGG - chr5_3:18407448-18407467 Msa0803300:exon 50.0%
ACAACACATTGCCCAAACCC+AGG + chr5_3:18407463-18407482 None:intergenic 50.0%
GGCAATGTGTTGTGCAAGAC+TGG - chr5_3:18407470-18407489 Msa0803300:CDS 50.0%
ACAACAACTTTCCCGGCATC+AGG + chr5_3:18407533-18407552 None:intergenic 50.0%
TCTGCAAGTGTGGTGAAGGA+TGG - chr5_3:18408187-18408206 Msa0803300:CDS 50.0%
CTTGCTCTTGAGTGCAGCTT+TGG + chr5_3:18407267-18407286 None:intergenic 50.0%
CAAAGCTGCACTCAAGAGCA+AGG - chr5_3:18407265-18407284 Msa0803300:three_prime_UTR 50.0%
CAAAAACTCAGGCCTGGGTT+TGG - chr5_3:18407448-18407467 Msa0803300:exon 50.0%
ACAACACATTGCCCAAACCC+AGG + chr5_3:18407463-18407482 None:intergenic 50.0%
GGCAATGTGTTGTGCAAGAC+TGG - chr5_3:18407470-18407489 Msa0803300:CDS 50.0%
ACAACAACTTTCCCGGCATC+AGG + chr5_3:18407533-18407552 None:intergenic 50.0%
TCTGCAAGTGTGGTGAAGGA+TGG - chr5_3:18408187-18408206 Msa0803300:CDS 50.0%
AGGACTACTGGACCTGATGC+CGG - chr5_3:18407518-18407537 Msa0803300:CDS 55.0%
GAAGGTCCTGATGCAGACTC+AGG - chr5_3:18408231-18408250 Msa0803300:CDS 55.0%
TCCTGATGCAGACTCAGGCA+AGG - chr5_3:18408236-18408255 Msa0803300:CDS 55.0%
CCTGATGCAGACTCAGGCAA+GGG - chr5_3:18408237-18408256 Msa0803300:CDS 55.0%
AGGACTACTGGACCTGATGC+CGG - chr5_3:18407518-18407537 Msa0803300:CDS 55.0%
GAAGGTCCTGATGCAGACTC+AGG - chr5_3:18408231-18408250 Msa0803300:CDS 55.0%
TCCTGATGCAGACTCAGGCA+AGG - chr5_3:18408236-18408255 Msa0803300:CDS 55.0%
CCTGATGCAGACTCAGGCAA+GGG - chr5_3:18408237-18408256 Msa0803300:CDS 55.0%
GGACTACTGGACCTGATGCC+GGG - chr5_3:18407519-18407538 Msa0803300:CDS 60.0%
CCCTTGCCTGAGTCTGCATC+AGG + chr5_3:18408240-18408259 None:intergenic 60.0%
GGACTACTGGACCTGATGCC+GGG - chr5_3:18407519-18407538 Msa0803300:CDS 60.0%
CCCTTGCCTGAGTCTGCATC+AGG + chr5_3:18408240-18408259 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 18407062 18408696 18407062 ID=Msa0803300;Name=Msa0803300
chr5_3 mRNA 18407062 18408696 18407062 ID=Msa0803300-mRNA-1;Parent=Msa0803300;Name=Msa0803300-mRNA-1;_AED=0.14;_eAED=0.14;_QI=194|1|1|1|1|1|3|391|120
chr5_3 exon 18407062 18407630 18407062 ID=Msa0803300-mRNA-1:exon:7543;Parent=Msa0803300-mRNA-1
chr5_3 exon 18408176 18408328 18408176 ID=Msa0803300-mRNA-1:exon:7542;Parent=Msa0803300-mRNA-1
chr5_3 exon 18408471 18408696 18408471 ID=Msa0803300-mRNA-1:exon:7541;Parent=Msa0803300-mRNA-1
chr5_3 five_prime_UTR 18408503 18408696 18408503 ID=Msa0803300-mRNA-1:five_prime_utr;Parent=Msa0803300-mRNA-1
chr5_3 CDS 18408471 18408502 18408471 ID=Msa0803300-mRNA-1:cds;Parent=Msa0803300-mRNA-1
chr5_3 CDS 18408176 18408328 18408176 ID=Msa0803300-mRNA-1:cds;Parent=Msa0803300-mRNA-1
chr5_3 CDS 18407453 18407630 18407453 ID=Msa0803300-mRNA-1:cds;Parent=Msa0803300-mRNA-1
chr5_3 three_prime_UTR 18407062 18407452 18407062 ID=Msa0803300-mRNA-1:three_prime_utr;Parent=Msa0803300-mRNA-1
Gene Sequence

>Msa0803300

ATGGAGTCCCAAAGCTGCACTCAAGAGCAAGGGAAAGTGATAGTTCAAGACAAAAACTCAGGCCTGGGTTTGGGCAATGTGTTGTGCAAGACTGGTAAAGGTTGGACATGTGTTATAACTAGGACTACTGGACCTGATGCCGGGAAAGTTGTTGTTAAATGTGGTGAAAATTGCACTTGCACACTTGATGGTGGAGCTGTGACACCTGAAATTGAGAGTAGCAGTGACAATGGCAGTGAAACATTCTGCAAGTGTGGTGAAGGATGGAGTTGTTCCATTTTTAGGACTGAAGGTCCTGATGCAGACTCAGGCAAGGGATTTGCTGATTGCACTCAACAGTATAACTGTGCTTGTAAATGTTGA
Protein sequence

>Msa0803300

MESQSCTQEQGKVIVQDKNSGLGLGNVLCKTGKGWTCVITRTTGPDAGKVVVKCGENCTCTLDGGAVTPEIESSSDNGSETFCKCGEGWSCSIFRTEGPDADSGKGFADCTQQYNCACKC*