AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1361650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1361650 MtrunA17_Chr5g0421111 97.070 546 15 1 1 545 1 546 0.0 1087
Msa1361650 MtrunA17_Chr8g0365941 57.905 525 147 14 1 517 1 459 0.0 531
Msa1361650 MtrunA17_Chr7g0234761 36.344 454 177 17 139 548 128 513 4.44e-59 205
Msa1361650 MtrunA17_Chr1g0152131 55.665 203 63 5 296 474 191 390 2.91e-56 195
Msa1361650 MtrunA17_Chr8g0339091 37.500 424 197 18 140 537 93 474 3.51e-56 196
Msa1361650 MtrunA17_Chr3g0144641 51.402 214 84 6 346 542 173 383 3.23e-53 186
Msa1361650 MtrunA17_Chr4g0035101 79.412 102 18 1 352 453 134 232 9.91e-48 169
Msa1361650 MtrunA17_Chr8g0363921 76.344 93 22 0 361 453 148 240 3.64e-41 150
Msa1361650 MtrunA17_Chr7g0258161 73.913 92 24 0 358 449 167 258 9.02e-41 150
Msa1361650 MtrunA17_Chr3g0131771 74.227 97 22 1 355 448 138 234 1.01e-39 147
Msa1361650 MtrunA17_Chr8g0385911 76.289 97 19 3 361 454 142 237 1.38e-39 147
Msa1361650 MtrunA17_Chr5g0415291 72.917 96 25 1 342 437 91 185 2.47e-39 144
Msa1361650 MtrunA17_Chr1g0174161 70.787 89 26 0 361 449 157 245 3.53e-38 143
Msa1361650 MtrunA17_Chr6g0484271 59.633 109 43 1 337 444 127 235 1.43e-33 129
Msa1361650 MtrunA17_Chr4g0074161 65.753 73 24 1 357 429 199 270 4.71e-21 95.9
Msa1361650 MtrunA17_Chr1g0190731 68.182 66 20 1 364 429 193 257 6.89e-20 91.7
Msa1361650 MtrunA17_Chr4g0014771 56.923 65 28 0 364 428 118 182 1.90e-15 75.1
Msa1361650 MtrunA17_Chr7g0258181 50.000 74 37 0 364 437 243 316 2.76e-15 77.0
Msa1361650 MtrunA17_Chr1g0174271 52.113 71 34 0 364 434 298 368 6.64e-15 76.6
Msa1361650 MtrunA17_Chr4g0032951 56.923 65 28 0 364 428 355 419 1.14e-14 76.3
Msa1361650 MtrunA17_Chr1g0193321 33.898 118 67 2 331 438 419 535 1.36e-14 77.0
Msa1361650 MtrunA17_Chr1g0182791 52.174 69 32 1 366 434 319 386 3.45e-14 75.5
Msa1361650 MtrunA17_Chr2g0329041 42.529 87 42 1 359 437 319 405 3.65e-14 74.7
Msa1361650 MtrunA17_Chr1g0184841 63.636 66 23 1 364 429 120 184 1.88e-13 71.2
Msa1361650 MtrunA17_Chr3g0087771 44.086 93 47 1 336 428 299 386 6.55e-13 70.9
Msa1361650 MtrunA17_Chr3g0095391 51.562 64 30 1 366 429 311 373 6.02e-12 68.2
Msa1361650 MtrunA17_Chr1g0152651 50.769 65 31 1 364 428 274 337 1.69e-11 66.2
Msa1361650 MtrunA17_Chr7g0231461 44.186 86 36 2 353 427 275 359 1.79e-11 66.6
Msa1361650 MtrunA17_Chr1g0153241 46.154 65 34 1 366 430 87 150 2.40e-11 64.7
Msa1361650 MtrunA17_Chr8g0351881 41.026 78 38 1 359 428 303 380 2.58e-11 65.9
Msa1361650 MtrunA17_Chr7g0262691 48.438 64 32 1 366 429 254 316 5.09e-11 65.1
Msa1361650 MtrunA17_Chr3g0134741 51.562 64 30 1 365 428 230 292 8.34e-11 63.5
Msa1361650 MtrunA17_Chr5g0393721 50.000 64 31 1 365 428 225 287 9.88e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1361650 AT1G68920.3 43.017 537 214 18 6 533 6 459 4.84e-113 345
Msa1361650 AT1G68920.1 42.937 538 214 19 6 533 6 460 2.85e-111 341
Msa1361650 AT1G68920.4 42.937 538 214 19 6 533 6 460 2.85e-111 341
Msa1361650 AT1G68920.2 42.937 538 214 19 6 533 6 460 2.85e-111 341
Msa1361650 AT1G26260.4 40.603 431 131 16 112 538 68 377 2.30e-71 234
Msa1361650 AT1G26260.1 40.603 431 131 16 112 538 68 377 2.30e-71 234
Msa1361650 AT1G26260.6 40.603 431 131 16 112 538 68 377 2.30e-71 234
Msa1361650 AT1G26260.2 40.603 431 131 16 112 538 68 377 2.30e-71 234
Msa1361650 AT1G26260.5 41.519 395 128 15 148 538 60 355 6.18e-67 222
Msa1361650 AT1G26260.3 48.264 288 98 10 253 538 88 326 5.62e-65 216
Msa1361650 AT1G10120.2 49.776 223 76 6 314 535 161 348 7.86e-53 184
Msa1361650 AT1G10120.1 49.776 223 76 6 314 535 161 348 7.86e-53 184
Msa1361650 AT3G07340.2 57.396 169 52 4 283 451 197 345 3.79e-49 176
Msa1361650 AT3G07340.1 57.396 169 52 4 283 451 197 345 5.63e-49 176
Msa1361650 AT3G23690.1 53.261 184 67 8 353 533 178 345 1.99e-46 167
Msa1361650 AT4G34530.1 69.565 115 30 2 358 467 166 280 7.31e-46 164
Msa1361650 AT5G48560.2 75.962 104 22 2 351 451 286 389 1.09e-45 167
Msa1361650 AT5G48560.1 75.962 104 22 2 351 451 286 389 2.11e-45 167
Msa1361650 AT1G59640.1 55.782 147 62 2 309 453 80 225 8.88e-42 151
Msa1361650 AT1G59640.2 55.862 145 61 2 309 451 80 223 1.54e-41 153
Msa1361650 AT4G36540.1 54.194 155 65 3 308 457 81 234 3.08e-41 151
Msa1361650 AT2G42300.4 70.968 93 27 0 358 450 179 271 4.09e-41 150
Msa1361650 AT4G36540.2 56.164 146 58 3 308 448 81 225 6.41e-41 150
Msa1361650 AT2G18300.1 52.229 157 52 4 312 448 116 269 4.51e-40 149
Msa1361650 AT2G18300.2 52.229 157 52 4 312 448 116 269 5.39e-40 149
Msa1361650 AT2G42300.1 71.739 92 26 0 358 449 179 270 7.08e-40 148
Msa1361650 AT3G57800.2 72.826 92 25 0 358 449 198 289 8.23e-40 149
Msa1361650 AT2G18300.3 52.229 157 52 4 312 448 116 269 9.70e-40 149
Msa1361650 AT5G50915.1 56.463 147 59 4 345 490 117 259 1.08e-39 146
Msa1361650 AT5G50915.2 56.463 147 59 4 345 490 117 259 1.08e-39 146
Msa1361650 AT5G50915.3 56.463 147 59 4 345 490 117 259 1.10e-39 146
Msa1361650 AT5G50915.4 56.463 147 59 4 345 490 117 259 1.10e-39 146
Msa1361650 AT5G62610.2 61.905 105 39 1 332 435 120 224 1.23e-35 135
Msa1361650 AT5G62610.1 61.905 105 39 1 332 435 120 224 1.23e-35 135
Msa1361650 AT1G18400.2 71.084 83 24 0 362 444 143 225 2.70e-33 127
Msa1361650 AT1G73830.2 57.759 116 44 1 338 448 121 236 2.79e-33 128
Msa1361650 AT1G18400.1 71.084 83 24 0 362 444 143 225 5.02e-33 127
Msa1361650 AT1G73830.1 59.813 107 43 0 338 444 121 227 5.91e-33 127
Msa1361650 AT1G25330.1 44.586 157 65 2 329 463 67 223 3.91e-32 124
Msa1361650 AT3G57800.1 48.201 139 25 1 358 449 198 336 2.93e-31 126
Msa1361650 AT5G58010.1 58.065 93 34 2 351 439 86 177 4.57e-22 97.4
Msa1361650 AT2G24260.2 64.384 73 25 1 357 429 28 99 7.39e-22 95.5
Msa1361650 AT4G30980.1 56.122 98 37 2 332 429 103 194 1.93e-21 95.9
Msa1361650 AT2G24260.1 64.384 73 25 1 357 429 131 202 4.04e-21 95.5
Msa1361650 AT4G30980.2 56.122 98 37 2 332 429 151 242 4.44e-21 95.5
Msa1361650 AT2G42300.5 78.261 46 10 0 358 403 179 224 3.02e-17 81.6
Msa1361650 AT2G42300.3 78.261 46 10 0 358 403 179 224 3.02e-17 81.6
Msa1361650 AT2G42300.2 78.261 46 10 0 358 403 179 224 3.66e-17 81.6
Msa1361650 AT4G09180.1 50.000 78 37 1 362 437 182 259 5.40e-15 75.9
Msa1361650 AT2G42280.1 54.688 64 29 0 364 427 279 342 1.12e-14 76.3
Msa1361650 AT2G42280.3 56.061 66 27 1 364 427 279 344 2.24e-14 75.5
Msa1361650 AT1G35460.1 52.239 67 32 0 362 428 179 245 3.87e-14 73.2
Msa1361650 AT2G20180.7 53.968 63 28 1 367 429 210 271 4.93e-14 74.7
Msa1361650 AT2G20180.1 53.968 63 28 1 367 429 210 271 4.93e-14 74.7
Msa1361650 AT2G20180.5 53.968 63 28 1 367 429 210 271 4.93e-14 74.7
Msa1361650 AT2G20180.4 53.125 64 29 1 366 429 280 342 5.57e-14 75.1
Msa1361650 AT2G20180.6 53.125 64 29 1 366 429 280 342 5.57e-14 75.1
Msa1361650 AT2G20180.2 53.125 64 29 1 366 429 280 342 5.57e-14 75.1
Msa1361650 AT2G20180.3 53.125 64 29 1 366 429 280 342 5.57e-14 75.1
Msa1361650 AT1G09530.3 51.562 64 30 1 366 429 339 401 1.14e-13 73.9
Msa1361650 AT1G09530.2 51.562 64 30 1 366 429 339 401 1.14e-13 73.9
Msa1361650 AT1G09530.5 51.562 64 30 1 366 429 339 401 1.14e-13 73.9
Msa1361650 AT1G09530.1 51.562 64 30 1 366 429 339 401 1.14e-13 73.9
Msa1361650 AT1G09530.4 51.562 64 30 1 366 429 339 401 1.14e-13 73.9
Msa1361650 AT1G09530.6 51.562 64 30 1 366 429 339 401 1.14e-13 73.9
Msa1361650 AT4G28790.1 33.775 151 77 5 366 513 273 403 1.47e-13 73.2
Msa1361650 AT1G51140.1 54.688 64 29 0 364 427 304 367 2.62e-13 72.4
Msa1361650 AT4G28815.2 55.172 58 25 1 367 424 71 127 6.20e-13 68.9
Msa1361650 AT4G02590.3 62.121 66 24 1 364 429 83 147 9.54e-13 68.9
Msa1361650 AT2G20180.8 52.459 61 28 1 366 426 280 339 1.10e-12 70.1
Msa1361650 AT4G02590.2 62.121 66 24 1 364 429 146 210 1.17e-12 69.7
Msa1361650 AT4G02590.1 62.121 66 24 1 364 429 146 210 1.17e-12 69.7
Msa1361650 AT1G03040.2 62.121 66 24 1 364 429 139 203 1.42e-12 68.9
Msa1361650 AT1G03040.1 62.121 66 24 1 364 429 144 208 1.58e-12 68.9
Msa1361650 AT4G28815.1 55.172 58 25 1 367 424 147 203 1.80e-12 68.9
Msa1361650 AT4G28800.1 45.205 73 39 1 367 439 252 323 2.42e-12 69.7
Msa1361650 AT4G00050.2 52.308 65 30 1 364 428 105 168 2.66e-12 68.2
Msa1361650 AT1G03040.3 62.121 66 24 1 364 429 144 208 3.03e-12 68.6
Msa1361650 AT4G00050.1 52.308 65 30 1 364 428 207 270 6.33e-12 68.2
Msa1361650 AT4G00050.3 52.308 65 30 1 364 428 207 270 6.55e-12 67.8
Msa1361650 AT4G28790.2 46.970 66 34 1 366 431 273 337 1.31e-11 66.6
Msa1361650 AT4G28800.2 52.542 59 27 1 367 425 264 321 2.26e-11 66.6
Msa1361650 AT4G33880.1 45.000 80 41 2 351 428 251 329 3.03e-11 65.5
Msa1361650 AT2G43140.2 51.562 64 31 0 364 427 231 294 3.82e-11 65.1
Msa1361650 AT1G27740.1 43.434 99 48 3 337 428 133 230 4.86e-11 63.9
Msa1361650 AT2G43140.1 50.000 66 33 0 362 427 132 197 6.83e-11 62.8
Msa1361650 AT2G14760.1 49.231 65 32 1 364 428 237 300 8.28e-11 63.9

Find 199 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTTCTATTATGATAATT+TGG 0.189854 tig0017568:+2884 Msa1361650:five_prime_UTR
TCTCAGTTTCCTACTGATTC+TGG 0.189881 tig0017568:+3603 Msa1361650:CDS
AGTGATGTAGTGAACGCTTA+TGG 0.252653 tig0017568:+3675 Msa1361650:CDS
ACTCATTTACTCCTAACTTT+TGG 0.254020 tig0017568:+3373 Msa1361650:CDS
AGTAGCACAGGATCAGAAAA+TGG 0.263641 tig0017568:+2610 Msa1361650:five_prime_UTR
TTGTAGTTCTTGAGCTCTAC+TGG 0.277673 tig0017568:-4197 Msa1361650:intergenic
CTTCAAATACAATTGGAATA+AGG 0.288689 tig0017568:+3448 Msa1361650:CDS
TCTGTTGGGTTGGTTTCAAT+TGG 0.290470 tig0017568:+3282 Msa1361650:CDS
GATCATGGAACACTTGAAAT+TGG 0.303398 tig0017568:+3504 Msa1361650:CDS
TCACCCTTCTGTTGGTTCTC+AGG 0.306928 tig0017568:-4241 Msa1361650:intergenic
CAATGGATCAATACCTGATT+TGG 0.309027 tig0017568:-5487 Msa1361650:intergenic
GCTGCGAGGTTCTCGTGTTT+TGG 0.317332 tig0017568:+3639 Msa1361650:CDS
CACCCTTCTGTTGGTTCTCA+GGG 0.326528 tig0017568:-4240 Msa1361650:intergenic
AGTTCGACAATGAAGGCTTC+TGG 0.338562 tig0017568:+4274 Msa1361650:CDS
TTCTGGGAAGAATGCCAAAC+AGG 0.341010 tig0017568:+4291 Msa1361650:CDS
GAGTTTAGTCCTTTCATAGA+AGG 0.345035 tig0017568:-4047 Msa1361650:intergenic
AGGAAAGATGGGTTTGGCTT+TGG 0.347342 tig0017568:+3468 Msa1361650:CDS
ATGCCACCTGATTGGAGATT+TGG 0.358034 tig0017568:+3249 Msa1361650:CDS
AATTTGGTACTTACAAGCTT+TGG 0.358624 tig0017568:+2900 Msa1361650:five_prime_UTR
TTGCCAAACTTGAAGGCCTT+GGG 0.360091 tig0017568:+6200 Msa1361650:CDS
GGAACTAGGGATGCTCTTGC+AGG 0.361664 tig0017568:+3738 Msa1361650:CDS
ATTTACTGTTGCAAGTTTCA+TGG 0.362132 tig0017568:-5132 Msa1361650:intergenic
TCGGACGGGTTTGCCATGTT+TGG 0.369494 tig0017568:-5406 Msa1361650:intergenic
GGGAGTTCTTCAAATACAAT+TGG 0.377973 tig0017568:+3441 Msa1361650:CDS
CTGTTGGGTTGGTTTCAATT+GGG 0.381869 tig0017568:+3283 Msa1361650:CDS
ACATGTATGTATTCCTCCTT+AGG 0.389054 tig0017568:-4334 Msa1361650:intergenic
ACACGACTTGCCAAACTTGA+AGG 0.397048 tig0017568:+6193 Msa1361650:CDS
TACCAAATTATCATAATAGA+AGG 0.405256 tig0017568:-2886 Msa1361650:intergenic
TAGTAGTACCTTCCAACATT+GGG 0.407959 tig0017568:-4016 Msa1361650:intergenic
GCTAAACTCGTGTGAACATT+TGG 0.408991 tig0017568:+2934 Msa1361650:five_prime_UTR
ATGTATGCCGGTTCAATTCA+TGG 0.409773 tig0017568:+3717 Msa1361650:CDS
GAAGCCTTCATTGTCGAACT+TGG 0.410547 tig0017568:-4271 Msa1361650:intergenic
TTTCTTCAAGAACTTGTGCC+TGG 0.416423 tig0017568:+4519 Msa1361650:CDS
TGATTCCGACAGAGGTGAAT+CGG 0.417204 tig0017568:+3956 Msa1361650:CDS
GAATGATAAAAGCGAGGGTC+GGG 0.422825 tig0017568:+3887 Msa1361650:CDS
GGAATAAGGAAAGATGGGTT+TGG 0.429728 tig0017568:+3462 Msa1361650:CDS
TCATTGTCGAACTTGGTTGT+TGG 0.430666 tig0017568:-4264 Msa1361650:intergenic
ACAATTGGAATAAGGAAAGA+TGG 0.431452 tig0017568:+3456 Msa1361650:CDS
GTGATGTAGTGAACGCTTAT+GGG 0.431577 tig0017568:+3676 Msa1361650:CDS
ATGGAACACTTGAAATTGGT+TGG 0.432972 tig0017568:+3508 Msa1361650:CDS
AGCTCGTCCGCCCACACATC+AGG 0.433940 tig0017568:-5755 Msa1361650:intergenic
ATAATTTGAGTGGAAAGAAA+AGG 0.434864 tig0017568:-2404 Msa1361650:intergenic
GTTCGACAATGAAGGCTTCT+GGG 0.438253 tig0017568:+4275 Msa1361650:CDS
TTCGTCGAATTCACAAAACT+TGG 0.438619 tig0017568:+3401 Msa1361650:CDS
CGGGCCGGGTCTCAAGATGA+AGG 0.439323 tig0017568:+3906 Msa1361650:CDS
GATGGGTTTGGCTTTGGAAG+AGG 0.440982 tig0017568:+3474 Msa1361650:CDS
CTTGCCAAACTTGAAGGCCT+TGG 0.445232 tig0017568:+6199 Msa1361650:CDS
GTCACCATCTGTTGAGCAAT+TGG 0.446286 tig0017568:+3842 Msa1361650:CDS
CACTGGTAAGGCAGTGATGC+TGG 0.456491 tig0017568:+4654 Msa1361650:CDS
TCTTTCTTTCTTTAGGGAGG+GGG 0.456830 tig0017568:+2860 Msa1361650:intron
GTCATGTTCATCTGCCTCAA+TGG 0.457257 tig0017568:+3347 Msa1361650:CDS
ACCGTTGAGTGGAGGATTCA+AGG 0.457519 tig0017568:+5462 Msa1361650:CDS
TCTCTCTAAAAGGGAACTGC+AGG 0.458487 tig0017568:+2505 Msa1361650:five_prime_UTR
GTAGCTGCTTCAACCACATT+CGG 0.459711 tig0017568:-3810 Msa1361650:intergenic
GTACTTACAAGCTTTGGAAA+TGG 0.461968 tig0017568:+2906 Msa1361650:five_prime_UTR
CCGGTTCAATTCATGGAACT+AGG 0.462018 tig0017568:+3724 Msa1361650:CDS
AATAGTTCTTCGAAGGATAT+CGG 0.462281 tig0017568:-5425 Msa1361650:intergenic
TGCAAATTCATCTGTTGGGT+TGG 0.463783 tig0017568:+3272 Msa1361650:CDS
GTTGTTGGTCACCCTTCTGT+TGG 0.463868 tig0017568:-4249 Msa1361650:intergenic
AGGAGGAATACATACATGTC+AGG 0.465382 tig0017568:+4338 Msa1361650:CDS
GACGAATGGTCCCAAAAGTT+AGG 0.467097 tig0017568:-3384 Msa1361650:intergenic
CTTTCATCATAGCATTAGCC+TGG 0.468303 tig0017568:-3533 Msa1361650:intergenic
GGAAGAGGTGGTCATGATCA+TGG 0.471227 tig0017568:+3489 Msa1361650:CDS
TATACTAGTAGTTAGTACTT+TGG 0.472115 tig0017568:+2424 Msa1361650:five_prime_UTR
TTACCCTCTCTGCAAGGCTA+TGG 0.472298 tig0017568:-4387 Msa1361650:intergenic
CAGCCATAGCCTTGCAGAGA+GGG 0.475539 tig0017568:+4384 Msa1361650:CDS
CATACATGTCAGGGCTCGCC+GGG 0.476438 tig0017568:+4348 Msa1361650:CDS
AGGCTAATGCTATGATGAAA+GGG 0.479565 tig0017568:+3535 Msa1361650:CDS
CCTAGTTCCATGAATTGAAC+CGG 0.480473 tig0017568:-3724 Msa1361650:intergenic
AGGATTCAAGGAGCCAAATC+AGG 0.482445 tig0017568:+5474 Msa1361650:CDS
TTTGCACCAAATCTCCAATC+AGG 0.483200 tig0017568:-3255 Msa1361650:intergenic
AGTTTGTACCATCCACATCT+TGG 0.483306 tig0017568:-5826 Msa1361650:intergenic
CTTCCCTTCATCTTGAGACC+CGG 0.484549 tig0017568:-3910 Msa1361650:intergenic
TTTGGTGCAAATTCATCTGT+TGG 0.488720 tig0017568:+3267 Msa1361650:CDS
ATGTTTGCAGGTCACTGGTA+AGG 0.491200 tig0017568:+4642 Msa1361650:intron
ATCCACATCTTGGCTACTCA+TGG 0.492286 tig0017568:-5816 Msa1361650:intergenic
CTTTCTTTCTTTAGGGAGGG+GGG 0.494041 tig0017568:+2861 Msa1361650:intron
GATAAAAGCGAGGGTCGGGC+CGG 0.496645 tig0017568:+3891 Msa1361650:CDS
AAGGACTAAACTCGAAGAAA+AGG 0.496988 tig0017568:+4057 Msa1361650:CDS
TAATTTGAGTGGAAAGAAAA+GGG 0.497623 tig0017568:-2403 Msa1361650:intergenic
CAATCCATGGCGATGTATGC+CGG 0.498492 tig0017568:+3705 Msa1361650:CDS
GATTCCGACAGAGGTGAATC+GGG 0.499637 tig0017568:+3957 Msa1361650:CDS
CAATTGGAATAAGGAAAGAT+GGG 0.500037 tig0017568:+3457 Msa1361650:CDS
TGTAGTTCTTGAGCTCTACT+GGG 0.503445 tig0017568:-4196 Msa1361650:intergenic
AACTTACATCTTTAGCAAGA+AGG 0.504065 tig0017568:-5181 Msa1361650:intergenic
TTGGTGCAAATTCATCTGTT+GGG 0.505316 tig0017568:+3268 Msa1361650:CDS
AGGGATGCTCTTGCAGGCGT+TGG 0.507541 tig0017568:+3744 Msa1361650:CDS
AAAGAAAAGTTTGAGGTGGA+TGG 0.508553 tig0017568:+3192 Msa1361650:CDS
ACATACATGTCAGGGCTCGC+CGG 0.509883 tig0017568:+4347 Msa1361650:CDS
CAGATTCTTCACCAACGGCC+TGG 0.510859 tig0017568:+5292 Msa1361650:intron
ATACCACTAGAATAACTCAT+AGG 0.511749 tig0017568:-3228 Msa1361650:intergenic
CTAGTGGTATGCCACCTGAT+TGG 0.512379 tig0017568:+3241 Msa1361650:CDS
AAAGCCACCTTGCTGCATCC+AGG 0.516400 tig0017568:-4537 Msa1361650:intergenic
GTAGCACAGGATCAGAAAAT+GGG 0.521827 tig0017568:+2611 Msa1361650:five_prime_UTR
ATTCTATGAGTATGAATAGA+GGG 0.526004 tig0017568:+3307 Msa1361650:CDS
CAGGGTGCTAAAAGTAGCAC+AGG 0.526054 tig0017568:+2598 Msa1361650:five_prime_UTR
GAGTGGAAAGAAAAGGGTAA+TGG 0.526119 tig0017568:-2397 Msa1361650:intergenic
GTTTGAGGTGGATGGAGATG+AGG 0.526892 tig0017568:+3200 Msa1361650:CDS
GTGGTTGAAGCAGCTACAAA+AGG 0.527400 tig0017568:+3816 Msa1361650:CDS
TGTTGATGTTTGCAGGTCAC+TGG 0.529088 tig0017568:+4637 Msa1361650:intron
AATTCTATGAGTATGAATAG+AGG 0.529332 tig0017568:+3306 Msa1361650:CDS
TGCTTTAGATGCCTGATGTG+TGG 0.531312 tig0017568:+5744 Msa1361650:intron
GCATACATCGCCATGGATTG+AGG 0.532580 tig0017568:-3702 Msa1361650:intergenic
GGGTTTGGCTTTGGAAGAGG+TGG 0.532994 tig0017568:+3477 Msa1361650:CDS
CAGGCTAATGCTATGATGAA+AGG 0.533203 tig0017568:+3534 Msa1361650:CDS
CCTAGTGTGGATGAAGGACC+AGG 0.537537 tig0017568:-5310 Msa1361650:intergenic
CTAGTAGTACCTTCCAACAT+TGG 0.537550 tig0017568:-4017 Msa1361650:intergenic
GCTCAAGAACTACAAAATGA+AGG 0.537868 tig0017568:+4205 Msa1361650:CDS
CCTGGTTGAGATGGATGTAA+TGG 0.538930 tig0017568:-5364 Msa1361650:intergenic
ACAACCAAGTTCGACAATGA+AGG 0.539816 tig0017568:+4267 Msa1361650:CDS
GGCTGTTTGTTGCTTGACCC+CGG 0.540075 tig0017568:-4366 Msa1361650:intergenic
TGAATCATCCCTGGTTGAGA+TGG 0.540521 tig0017568:-5373 Msa1361650:intergenic
GGATCATCACTCTCTTGTGT+TGG 0.542048 tig0017568:-3789 Msa1361650:intergenic
TGAGGTGGATGGAGATGAGG+AGG 0.543060 tig0017568:+3203 Msa1361650:CDS
ACAAGATGGTTCCCCAATGT+TGG 0.543943 tig0017568:+4004 Msa1361650:CDS
ATAAAAGCGAGGGTCGGGCC+GGG 0.545728 tig0017568:+3892 Msa1361650:CDS
TTCAAGTTTGGCAAGTCGTG+TGG 0.546672 tig0017568:-6191 Msa1361650:intergenic
TGCAACAGTAAATCCACGGC+TGG 0.549394 tig0017568:+5142 Msa1361650:CDS
GGTGACGATGATGGTGGTCG+TGG 0.549709 tig0017568:+3978 Msa1361650:CDS
TCAAAATTCTGATCCACCTA+AGG 0.553749 tig0017568:+4318 Msa1361650:CDS
TATGTAAGCGTGAGTGAGTG+AGG 0.554316 tig0017568:+2352 Msa1361650:five_prime_UTR
CCATTACATCCATCTCAACC+AGG 0.557186 tig0017568:+5364 Msa1361650:CDS
CCTGGTCCTTCATCCACACT+AGG 0.558930 tig0017568:+5310 Msa1361650:CDS
GTTGGACTTCGAGTAGCAAA+TGG 0.559598 tig0017568:+3762 Msa1361650:CDS
TTTCTTTCTTTAGGGAGGGG+GGG 0.561280 tig0017568:+2862 Msa1361650:intron
CGGTTCAATTCATGGAACTA+GGG 0.563315 tig0017568:+3725 Msa1361650:CDS
TCGTCGAATTCACAAAACTT+GGG 0.563821 tig0017568:+3402 Msa1361650:CDS
GAGTGACAAAGAAAAGTTTG+AGG 0.565967 tig0017568:+3185 Msa1361650:CDS
ACTTGAAATTGGTTGGAACC+AGG 0.567324 tig0017568:+3515 Msa1361650:CDS
AGTGGAGAGCCTTCTATGAA+AGG 0.567968 tig0017568:+4038 Msa1361650:CDS
ATGTTCATCTGCCTCAATGG+TGG 0.569853 tig0017568:+3350 Msa1361650:CDS
TCCTTGAATCCTCCACTCAA+CGG 0.571453 tig0017568:-5463 Msa1361650:intergenic
GCTTTAGATGCCTGATGTGT+GGG 0.574539 tig0017568:+5745 Msa1361650:intron
TCAATCAGTGATTCCAAACA+TGG 0.574687 tig0017568:+5393 Msa1361650:CDS
TCGATAAAACCAGAATCAGT+AGG 0.575351 tig0017568:-3612 Msa1361650:intergenic
TTATGGGGTTCCTCAATCCA+TGG 0.575365 tig0017568:+3692 Msa1361650:CDS
TTCTTCGAAGGATATCGGAC+GGG 0.577452 tig0017568:-5420 Msa1361650:intergenic
AACTACTAGTATAATTTGAG+TGG 0.577915 tig0017568:-2414 Msa1361650:intergenic
GGTGGTCGTGGTGGACAAGA+TGG 0.579347 tig0017568:+3990 Msa1361650:CDS
GACGATGATGGTGGTCGTGG+TGG 0.581766 tig0017568:+3981 Msa1361650:CDS
TGCCAAACTTGAAGGCCTTG+GGG 0.583248 tig0017568:+6201 Msa1361650:CDS
GGAAATCCTAGTGTGGATGA+AGG 0.585198 tig0017568:-5316 Msa1361650:intergenic
ATGTTGGAAGGTACTACTAG+TGG 0.587812 tig0017568:+4020 Msa1361650:CDS
TCCACATCTTGGCTACTCAT+GGG 0.588110 tig0017568:-5815 Msa1361650:intergenic
GGTGAATCGGGTGACGATGA+TGG 0.589027 tig0017568:+3969 Msa1361650:CDS
ATCACTGATTGAATCATCCC+TGG 0.597295 tig0017568:-5382 Msa1361650:intergenic
TTGTCAGATGGAAATAACTA+CGG 0.604368 tig0017568:+6158 Msa1361650:intron
GATGGTTCCCCAATGTTGGA+AGG 0.604783 tig0017568:+4008 Msa1361650:CDS
GTGTATGAATAGTTCTTCGA+AGG 0.607675 tig0017568:-5432 Msa1361650:intergenic
GGAGGAATACATACATGTCA+GGG 0.608924 tig0017568:+4339 Msa1361650:CDS
GCCAAACTTGAAGGCCTTGG+GGG 0.610156 tig0017568:+6202 Msa1361650:CDS
TCTGGGAAGAATGCCAAACA+GGG 0.611782 tig0017568:+4292 Msa1361650:CDS
AAATTCTGATCCACCTAAGG+AGG 0.612050 tig0017568:+4321 Msa1361650:CDS
GTAGCCAATTGCTCAACAGA+TGG 0.612683 tig0017568:-3846 Msa1361650:intergenic
ACTACAAAATGAAGGTGCAA+AGG 0.613275 tig0017568:+4213 Msa1361650:CDS
TGTATGTATTCCTCCTTAGG+TGG 0.613419 tig0017568:-4331 Msa1361650:intergenic
AGAATGATAAAAGCGAGGGT+CGG 0.617597 tig0017568:+3886 Msa1361650:CDS
ACTGTCAGATTCTTCACCAA+CGG 0.618604 tig0017568:+5287 Msa1361650:intron
AAAGAAAAGGGTAATGGCAA+AGG 0.619680 tig0017568:-2391 Msa1361650:intergenic
TTTGAAGAATGATAAAAGCG+AGG 0.619913 tig0017568:+3881 Msa1361650:CDS
GTTCTTCGAAGGATATCGGA+CGG 0.621658 tig0017568:-5421 Msa1361650:intergenic
GTCACTTCAACGACAAGTTG+AGG 0.622054 tig0017568:+4699 Msa1361650:CDS
ACACAGTTAACACCGTTGAG+TGG 0.622575 tig0017568:+5451 Msa1361650:CDS
GGCTAATGCTATGATGAAAG+GGG 0.622867 tig0017568:+3536 Msa1361650:CDS
AATGTTAATGATTCCGACAG+AGG 0.622946 tig0017568:+3948 Msa1361650:CDS
CAACCCTGAGAACCAACAGA+AGG 0.624229 tig0017568:+4237 Msa1361650:CDS
TGATGTAGTGAACGCTTATG+GGG 0.624550 tig0017568:+3677 Msa1361650:CDS
AGTAAATGAGTCCACCATTG+AGG 0.626203 tig0017568:-3361 Msa1361650:intergenic
TTGAAGAATGATAAAAGCGA+GGG 0.626379 tig0017568:+3882 Msa1361650:CDS
TTCTATGAGTATGAATAGAG+GGG 0.627112 tig0017568:+3308 Msa1361650:CDS
CAGTTAACACCGTTGAGTGG+AGG 0.628541 tig0017568:+5454 Msa1361650:CDS
AAATTCATTGACATCTCTAG+AGG 0.629470 tig0017568:-5337 Msa1361650:intergenic
GTCACCCGATTCACCTCTGT+CGG 0.629653 tig0017568:-3961 Msa1361650:intergenic
AACTTGCAACAGTAAATCCA+CGG 0.632130 tig0017568:+5138 Msa1361650:CDS
CTCTAGAGGAAATCCTAGTG+TGG 0.634071 tig0017568:-5323 Msa1361650:intergenic
ATGAGTAGCCAAGATGTGGA+TGG 0.639201 tig0017568:+5818 Msa1361650:CDS
AATGCTATGATGAAAGGGGA+TGG 0.640341 tig0017568:+3540 Msa1361650:CDS
TGAACCGGCATACATCGCCA+TGG 0.640711 tig0017568:-3709 Msa1361650:intergenic
AACCCTGAGAACCAACAGAA+GGG 0.641900 tig0017568:+4238 Msa1361650:CDS
TGTATCTTACCCTCTCTGCA+AGG 0.649854 tig0017568:-4393 Msa1361650:intergenic
TGACAAAGAAAAGTTTGAGG+TGG 0.652348 tig0017568:+3188 Msa1361650:CDS
GGGCCGGGTCTCAAGATGAA+GGG 0.654605 tig0017568:+3907 Msa1361650:CDS
AAAAGCTTCAATAGAAGACA+GGG 0.657820 tig0017568:+2580 Msa1361650:five_prime_UTR
TGGATGAAGGACCAGGCCGT+TGG 0.658029 tig0017568:-5303 Msa1361650:intergenic
GCACCAAATCTCCAATCAGG+TGG 0.660162 tig0017568:-3252 Msa1361650:intergenic
TCCCATGAGTAGCCAAGATG+TGG 0.669295 tig0017568:+5814 Msa1361650:CDS
AGTAGTACCTTCCAACATTG+GGG 0.673147 tig0017568:-4015 Msa1361650:intergenic
GATCCTATGAGTTATTCTAG+TGG 0.678062 tig0017568:+3225 Msa1361650:CDS
TTAGATGCCTGATGTGTGGG+CGG 0.683943 tig0017568:+5748 Msa1361650:intron
CATTACATCCATCTCAACCA+GGG 0.684099 tig0017568:+5365 Msa1361650:CDS
GGTTGAGATGGATGTAATGG+AGG 0.685510 tig0017568:-5361 Msa1361650:intergenic
TCAATATTGAAATCCAGCCG+TGG 0.686618 tig0017568:-5155 Msa1361650:intergenic
GGACTTCGAGTAGCAAATGG+AGG 0.689394 tig0017568:+3765 Msa1361650:CDS
AGAGAGTGATGATCCGAATG+TGG 0.704038 tig0017568:+3797 Msa1361650:CDS
GGAAACTGAGATAAACTCTG+AGG 0.706311 tig0017568:-3591 Msa1361650:intergenic
ACTTGTGCCTGGATGCAGCA+AGG 0.709020 tig0017568:+4530 Msa1361650:CDS
GAATCGGGTGACGATGATGG+TGG 0.722378 tig0017568:+3972 Msa1361650:CDS
ATACATGTCAGGGCTCGCCG+GGG 0.730260 tig0017568:+4349 Msa1361650:CDS
ACAGCCATAGCCTTGCAGAG+AGG 0.735764 tig0017568:+4383 Msa1361650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATTTAAAAAAAAAAAACT+TGG + tig0017568:2691-2710 Msa1361650:intron 10.0%
!! CATTTAAAAAAAAAAAACTT+GGG + tig0017568:2692-2711 Msa1361650:intron 10.0%
!!! TTAATTTAGGTGAATTTTTA+AGG - tig0017568:2462-2481 Msa1361650:intergenic 15.0%
!!! TTTGGATAAAAATTTTAAAC+TGG + tig0017568:4450-4469 Msa1361650:intron 15.0%
!!! TAAGCTTGGATTTTTAATTT+AGG - tig0017568:2475-2494 Msa1361650:intergenic 20.0%
!! CTAACTTTAAATGAAAAAGT+AGG - tig0017568:2649-2668 Msa1361650:intergenic 20.0%
!!! CTACTTTTTCATTTAAAGTT+AGG + tig0017568:2647-2666 Msa1361650:intron 20.0%
!! TACCAAATTATCATAATAGA+AGG - tig0017568:2889-2908 Msa1361650:intergenic 20.0%
!! TAAATTATGTCTTGTGTAAA+TGG + tig0017568:4420-4439 Msa1361650:intron 20.0%
!! TGTGTAAATGGAAAATAATT+TGG + tig0017568:4432-4451 Msa1361650:intron 20.0%
!! AACATGAATAAATATGCAAA+GGG - tig0017568:5070-5089 Msa1361650:intergenic 20.0%
!! TAACATGAATAAATATGCAA+AGG - tig0017568:5071-5090 Msa1361650:intergenic 20.0%
!!! TAAGCATTTTTTTTTCTAAC+CGG - tig0017568:5224-5243 Msa1361650:intergenic 20.0%
!! AATAAAAAACCACAGATTTA+TGG + tig0017568:5600-5619 Msa1361650:intron 20.0%
!! TAAGTATTTTACAATAGCAG+TGG + tig0017568:2299-2318 Msa1361650:five_prime_UTR 25.0%
! TAATTTGAGTGGAAAGAAAA+GGG - tig0017568:2406-2425 Msa1361650:intergenic 25.0%
! ATAATTTGAGTGGAAAGAAA+AGG - tig0017568:2407-2426 Msa1361650:intergenic 25.0%
! AACTACTAGTATAATTTGAG+TGG - tig0017568:2417-2436 Msa1361650:intergenic 25.0%
! TATACTAGTAGTTAGTACTT+TGG + tig0017568:2424-2443 Msa1361650:five_prime_UTR 25.0%
!! TAGATTTTTCTCTCTCTAAA+AGG + tig0017568:2495-2514 Msa1361650:five_prime_UTR 25.0%
!!! AGATTTTTCTCTCTCTAAAA+GGG + tig0017568:2496-2515 Msa1361650:five_prime_UTR 25.0%
!!! AATAAAGTGCTTTTGATTTG+TGG + tig0017568:2554-2573 Msa1361650:five_prime_UTR 25.0%
!!! ATAAAGTGCTTTTGATTTGT+GGG + tig0017568:2555-2574 Msa1361650:five_prime_UTR 25.0%
! GTCCTTCTATTATGATAATT+TGG + tig0017568:2884-2903 Msa1361650:five_prime_UTR 25.0%
! AAAGTAGAAAGTGAAGAAAA+GGG - tig0017568:3067-3086 Msa1361650:intergenic 25.0%
! TAAAGTAGAAAGTGAAGAAA+AGG - tig0017568:3068-3087 Msa1361650:intergenic 25.0%
! AATTCTATGAGTATGAATAG+AGG + tig0017568:3306-3325 Msa1361650:CDS 25.0%
! ATTCTATGAGTATGAATAGA+GGG + tig0017568:3307-3326 Msa1361650:CDS 25.0%
! CTTCAAATACAATTGGAATA+AGG + tig0017568:3448-3467 Msa1361650:CDS 25.0%
!!! TTTTGAGCTTTATTTTGTTG+TGG + tig0017568:4109-4128 Msa1361650:intron 25.0%
!!! TTTGAGCTTTATTTTGTTGT+GGG + tig0017568:4110-4129 Msa1361650:intron 25.0%
! TAAATCATACTGAATTTCTC+TGG - tig0017568:4573-4592 Msa1361650:intergenic 25.0%
!!! ATTAATTTGTTGATGTTTGC+AGG + tig0017568:4630-4649 Msa1361650:intron 25.0%
! AAGTAGAACTAAAACATACA+GGG - tig0017568:4794-4813 Msa1361650:intergenic 25.0%
!! AAAGTACATGTTAAAGTGTT+GGG - tig0017568:4875-4894 Msa1361650:intergenic 25.0%
!! AAAAGTACATGTTAAAGTGT+TGG - tig0017568:4876-4895 Msa1361650:intergenic 25.0%
! CACGATTAACATTCAAAATT+AGG - tig0017568:4944-4963 Msa1361650:intergenic 25.0%
!! AACATGTAAAAGAAAGTACA+TGG - tig0017568:5677-5696 Msa1361650:intergenic 25.0%
!! GTACTTTCTTTTACATGTTT+CGG + tig0017568:5678-5697 Msa1361650:intron 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - tig0017568:5871-5890 Msa1361650:intergenic 25.0%
! GTAACAATGTAATTTAACTC+AGG - tig0017568:6036-6055 Msa1361650:intergenic 25.0%
GAGAGAAAAATCTATAAGCT+TGG - tig0017568:2489-2508 Msa1361650:intergenic 30.0%
AAAAAGCTTCAATAGAAGAC+AGG + tig0017568:2579-2598 Msa1361650:five_prime_UTR 30.0%
AAAAGCTTCAATAGAAGACA+GGG + tig0017568:2580-2599 Msa1361650:five_prime_UTR 30.0%
TCTCTCTCTTTCTTTCTTTA+GGG + tig0017568:2854-2873 Msa1361650:intron 30.0%
AATTTGGTACTTACAAGCTT+TGG + tig0017568:2900-2919 Msa1361650:five_prime_UTR 30.0%
! GAACATTTGGTACATCTTTT+TGG + tig0017568:2947-2966 Msa1361650:intron 30.0%
ATACCACTAGAATAACTCAT+AGG - tig0017568:3231-3250 Msa1361650:intergenic 30.0%
TTCTATGAGTATGAATAGAG+GGG + tig0017568:3308-3327 Msa1361650:CDS 30.0%
! ATGAATAGAGGGGATTTTAT+TGG + tig0017568:3318-3337 Msa1361650:CDS 30.0%
! ACTCATTTACTCCTAACTTT+TGG + tig0017568:3373-3392 Msa1361650:CDS 30.0%
! CTCATTTACTCCTAACTTTT+GGG + tig0017568:3374-3393 Msa1361650:CDS 30.0%
! TTGGGATTTTGTGACATTAA+TGG + tig0017568:3420-3439 Msa1361650:CDS 30.0%
! TGGGATTTTGTGACATTAAT+GGG + tig0017568:3421-3440 Msa1361650:CDS 30.0%
ACAATTGGAATAAGGAAAGA+TGG + tig0017568:3456-3475 Msa1361650:CDS 30.0%
CAATTGGAATAAGGAAAGAT+GGG + tig0017568:3457-3476 Msa1361650:CDS 30.0%
!!! TGATTCTGGTTTTATCGAAA+GGG + tig0017568:3617-3636 Msa1361650:CDS 30.0%
!! TCGCTTTTATCATTCTTCAA+AGG - tig0017568:3882-3901 Msa1361650:intergenic 30.0%
TTTGAAGAATGATAAAAGCG+AGG + tig0017568:3881-3900 Msa1361650:CDS 30.0%
TTGAAGAATGATAAAAGCGA+GGG + tig0017568:3882-3901 Msa1361650:CDS 30.0%
TCGAAGAAAAGGAAAAAAAG+TGG + tig0017568:4068-4087 Msa1361650:CDS 30.0%
AAAGAAGAACGATCAAACAA+AGG - tig0017568:4605-4624 Msa1361650:intergenic 30.0%
TTAGACAGATTAAGAATCTC+TGG - tig0017568:4763-4782 Msa1361650:intergenic 30.0%
GAAGTAGAACTAAAACATAC+AGG - tig0017568:4795-4814 Msa1361650:intergenic 30.0%
AAATATGACAGTGATCGTAT+AGG - tig0017568:4971-4990 Msa1361650:intergenic 30.0%
ATTTACTGTTGCAAGTTTCA+TGG - tig0017568:5135-5154 Msa1361650:intergenic 30.0%
AACTTACATCTTTAGCAAGA+AGG - tig0017568:5184-5203 Msa1361650:intergenic 30.0%
TTGTTAATCCAATTGCATAC+CGG + tig0017568:5202-5221 Msa1361650:intron 30.0%
AAATTCATTGACATCTCTAG+AGG - tig0017568:5340-5359 Msa1361650:intergenic 30.0%
AATAGTTCTTCGAAGGATAT+CGG - tig0017568:5428-5447 Msa1361650:intergenic 30.0%
ATCTGACTTATAAATGTGAC+TGG + tig0017568:5923-5942 Msa1361650:intron 30.0%
TTGTCAGATGGAAATAACTA+CGG + tig0017568:6158-6177 Msa1361650:intron 30.0%
! GTATTTTACAATAGCAGTGG+CGG + tig0017568:2302-2321 Msa1361650:five_prime_UTR 35.0%
! AAAGAAAAGGGTAATGGCAA+AGG - tig0017568:2394-2413 Msa1361650:intergenic 35.0%
!! TTCTGAAACTGTTTCTGACT+AGG + tig0017568:2720-2739 Msa1361650:intron 35.0%
!! TCTGAAACTGTTTCTGACTA+GGG + tig0017568:2721-2740 Msa1361650:intron 35.0%
CTCTCTCTCTTTCTTTCTTT+AGG + tig0017568:2853-2872 Msa1361650:intron 35.0%
! TCTCTTTCTTTCTTTAGGGA+GGG + tig0017568:2858-2877 Msa1361650:intron 35.0%
!! GTACTTACAAGCTTTGGAAA+TGG + tig0017568:2906-2925 Msa1361650:five_prime_UTR 35.0%
!! TGGTACATCTTTTTGGTACT+TGG + tig0017568:2954-2973 Msa1361650:intron 35.0%
!! TGGATTTTGTTTCAGCTCTT+TGG + tig0017568:2974-2993 Msa1361650:intron 35.0%
GAGTGACAAAGAAAAGTTTG+AGG + tig0017568:3185-3204 Msa1361650:CDS 35.0%
TGACAAAGAAAAGTTTGAGG+TGG + tig0017568:3188-3207 Msa1361650:CDS 35.0%
! AAAGAAAAGTTTGAGGTGGA+TGG + tig0017568:3192-3211 Msa1361650:CDS 35.0%
GATCCTATGAGTTATTCTAG+TGG + tig0017568:3225-3244 Msa1361650:CDS 35.0%
! TTTGGTGCAAATTCATCTGT+TGG + tig0017568:3267-3286 Msa1361650:CDS 35.0%
TTGGTGCAAATTCATCTGTT+GGG + tig0017568:3268-3287 Msa1361650:CDS 35.0%
!! AGTTTTGTGAATTCGACGAA+TGG - tig0017568:3401-3420 Msa1361650:intergenic 35.0%
TTCGTCGAATTCACAAAACT+TGG + tig0017568:3401-3420 Msa1361650:CDS 35.0%
TCGTCGAATTCACAAAACTT+GGG + tig0017568:3402-3421 Msa1361650:CDS 35.0%
GGGAGTTCTTCAAATACAAT+TGG + tig0017568:3441-3460 Msa1361650:CDS 35.0%
GATCATGGAACACTTGAAAT+TGG + tig0017568:3504-3523 Msa1361650:CDS 35.0%
ATGGAACACTTGAAATTGGT+TGG + tig0017568:3508-3527 Msa1361650:CDS 35.0%
AGGCTAATGCTATGATGAAA+GGG + tig0017568:3535-3554 Msa1361650:CDS 35.0%
TCGATAAAACCAGAATCAGT+AGG - tig0017568:3615-3634 Msa1361650:intergenic 35.0%
!!! CTGATTCTGGTTTTATCGAA+AGG + tig0017568:3616-3635 Msa1361650:CDS 35.0%
AATGTTAATGATTCCGACAG+AGG + tig0017568:3948-3967 Msa1361650:CDS 35.0%
TAGTAGTACCTTCCAACATT+GGG - tig0017568:4019-4038 Msa1361650:intergenic 35.0%
GAGTTTAGTCCTTTCATAGA+AGG - tig0017568:4050-4069 Msa1361650:intergenic 35.0%
AAGGACTAAACTCGAAGAAA+AGG + tig0017568:4057-4076 Msa1361650:CDS 35.0%
GAAAAGGAAAAAAAGTGGAC+AGG + tig0017568:4073-4092 Msa1361650:CDS 35.0%
! TGTGATTGAGTTTTTCCTTG+TGG + tig0017568:4152-4171 Msa1361650:intron 35.0%
! ATTGAGTTTTTCCTTGTGGT+AGG + tig0017568:4156-4175 Msa1361650:intron 35.0%
GCTCAAGAACTACAAAATGA+AGG + tig0017568:4205-4224 Msa1361650:CDS 35.0%
! ACTACAAAATGAAGGTGCAA+AGG + tig0017568:4213-4232 Msa1361650:CDS 35.0%
TCAAAATTCTGATCCACCTA+AGG + tig0017568:4318-4337 Msa1361650:CDS 35.0%
ACATGTATGTATTCCTCCTT+AGG - tig0017568:4337-4356 Msa1361650:intergenic 35.0%
! TTAAACTGGATTTTCACTGC+AGG + tig0017568:4464-4483 Msa1361650:intron 35.0%
GTGGGAAAATACAAAGAGAA+GGG - tig0017568:4741-4760 Msa1361650:intergenic 35.0%
ACAGATTAAGAATCTCTGGT+GGG - tig0017568:4759-4778 Msa1361650:intergenic 35.0%
CAAGTTTCATGGACAAAAAC+TGG - tig0017568:5124-5143 Msa1361650:intergenic 35.0%
AACTTGCAACAGTAAATCCA+CGG + tig0017568:5138-5157 Msa1361650:CDS 35.0%
! TTTTCTAACCGGTATGCAAT+TGG - tig0017568:5213-5232 Msa1361650:intergenic 35.0%
TCAATCAGTGATTCCAAACA+TGG + tig0017568:5393-5412 Msa1361650:CDS 35.0%
GTGTATGAATAGTTCTTCGA+AGG - tig0017568:5435-5454 Msa1361650:intergenic 35.0%
CAATGGATCAATACCTGATT+TGG - tig0017568:5490-5509 Msa1361650:intergenic 35.0%
AACAAAGACAAATTGTGCGA+AGG - tig0017568:5534-5553 Msa1361650:intergenic 35.0%
ATGATGCATCCATAAATCTG+TGG - tig0017568:5612-5631 Msa1361650:intergenic 35.0%
TTGCTTATAATTGTGACCAG+AGG + tig0017568:5983-6002 Msa1361650:intron 35.0%
TGCTTATAATTGTGACCAGA+GGG + tig0017568:5984-6003 Msa1361650:intron 35.0%
! CTTCACTACATCGCATATTT+TGG + tig0017568:6126-6145 Msa1361650:intron 35.0%
GAGTGGAAAGAAAAGGGTAA+TGG - tig0017568:2400-2419 Msa1361650:intergenic 40.0%
AGTAGCACAGGATCAGAAAA+TGG + tig0017568:2610-2629 Msa1361650:five_prime_UTR 40.0%
GTAGCACAGGATCAGAAAAT+GGG + tig0017568:2611-2630 Msa1361650:five_prime_UTR 40.0%
TTCTGACTAGGGTTTGAATG+AGG + tig0017568:2732-2751 Msa1361650:intron 40.0%
! CTCTCTTTCTTTCTTTAGGG+AGG + tig0017568:2857-2876 Msa1361650:intron 40.0%
! CTCTTTCTTTCTTTAGGGAG+GGG + tig0017568:2859-2878 Msa1361650:intron 40.0%
! TCTTTCTTTCTTTAGGGAGG+GGG + tig0017568:2860-2879 Msa1361650:intron 40.0%
GCTAAACTCGTGTGAACATT+TGG + tig0017568:2934-2953 Msa1361650:five_prime_UTR 40.0%
CAGAGAGACAAAGAGAAAGA+GGG - tig0017568:3032-3051 Msa1361650:intergenic 40.0%
TTTGCACCAAATCTCCAATC+AGG - tig0017568:3258-3277 Msa1361650:intergenic 40.0%
TGCAAATTCATCTGTTGGGT+TGG + tig0017568:3272-3291 Msa1361650:CDS 40.0%
!! TCTGTTGGGTTGGTTTCAAT+TGG + tig0017568:3282-3301 Msa1361650:CDS 40.0%
!! CTGTTGGGTTGGTTTCAATT+GGG + tig0017568:3283-3302 Msa1361650:CDS 40.0%
AGTAAATGAGTCCACCATTG+AGG - tig0017568:3364-3383 Msa1361650:intergenic 40.0%
! GGAATAAGGAAAGATGGGTT+TGG + tig0017568:3462-3481 Msa1361650:CDS 40.0%
ACTTGAAATTGGTTGGAACC+AGG + tig0017568:3515-3534 Msa1361650:CDS 40.0%
CTTTCATCATAGCATTAGCC+TGG - tig0017568:3536-3555 Msa1361650:intergenic 40.0%
CAGGCTAATGCTATGATGAA+AGG + tig0017568:3534-3553 Msa1361650:CDS 40.0%
GGCTAATGCTATGATGAAAG+GGG + tig0017568:3536-3555 Msa1361650:CDS 40.0%
AATGCTATGATGAAAGGGGA+TGG + tig0017568:3540-3559 Msa1361650:CDS 40.0%
!!! GGTTTTTTACCGAATGGACA+AGG + tig0017568:3561-3580 Msa1361650:CDS 40.0%
GGAAAAACACCTTGTCCATT+CGG - tig0017568:3573-3592 Msa1361650:intergenic 40.0%
GGAAACTGAGATAAACTCTG+AGG - tig0017568:3594-3613 Msa1361650:intergenic 40.0%
!! TCTCAGTTTCCTACTGATTC+TGG + tig0017568:3603-3622 Msa1361650:CDS 40.0%
AGTGATGTAGTGAACGCTTA+TGG + tig0017568:3675-3694 Msa1361650:CDS 40.0%
GTGATGTAGTGAACGCTTAT+GGG + tig0017568:3676-3695 Msa1361650:CDS 40.0%
TGATGTAGTGAACGCTTATG+GGG + tig0017568:3677-3696 Msa1361650:CDS 40.0%
!! ATGTATGCCGGTTCAATTCA+TGG + tig0017568:3717-3736 Msa1361650:CDS 40.0%
CCTAGTTCCATGAATTGAAC+CGG - tig0017568:3727-3746 Msa1361650:intergenic 40.0%
CGGTTCAATTCATGGAACTA+GGG + tig0017568:3725-3744 Msa1361650:CDS 40.0%
AGAATGATAAAAGCGAGGGT+CGG + tig0017568:3886-3905 Msa1361650:CDS 40.0%
AGTAGTACCTTCCAACATTG+GGG - tig0017568:4018-4037 Msa1361650:intergenic 40.0%
CTAGTAGTACCTTCCAACAT+TGG - tig0017568:4020-4039 Msa1361650:intergenic 40.0%
!! ATGTTGGAAGGTACTACTAG+TGG + tig0017568:4020-4039 Msa1361650:CDS 40.0%
GGAAAAAAAGTGGACAGGTA+TGG + tig0017568:4078-4097 Msa1361650:intron 40.0%
ATTATCAGCATCCTACCACA+AGG - tig0017568:4170-4189 Msa1361650:intergenic 40.0%
TGTAGTTCTTGAGCTCTACT+GGG - tig0017568:4199-4218 Msa1361650:intergenic 40.0%
TTGTAGTTCTTGAGCTCTAC+TGG - tig0017568:4200-4219 Msa1361650:intergenic 40.0%
TCATTGTCGAACTTGGTTGT+TGG - tig0017568:4267-4286 Msa1361650:intergenic 40.0%
ACAACCAAGTTCGACAATGA+AGG + tig0017568:4267-4286 Msa1361650:CDS 40.0%
!! AGAATTTTGAGAGCCCTGTT+TGG - tig0017568:4308-4327 Msa1361650:intergenic 40.0%
AAATTCTGATCCACCTAAGG+AGG + tig0017568:4321-4340 Msa1361650:CDS 40.0%
TGTATGTATTCCTCCTTAGG+TGG - tig0017568:4334-4353 Msa1361650:intergenic 40.0%
AGGAGGAATACATACATGTC+AGG + tig0017568:4338-4357 Msa1361650:CDS 40.0%
GGAGGAATACATACATGTCA+GGG + tig0017568:4339-4358 Msa1361650:CDS 40.0%
GGAGGGAAAAAATAAGTGAG+AGG + tig0017568:4490-4509 Msa1361650:CDS 40.0%
TTTCTTCAAGAACTTGTGCC+TGG + tig0017568:4519-4538 Msa1361650:CDS 40.0%
! TTCAACGACAAGTTGAGGTA+TGG + tig0017568:4704-4723 Msa1361650:intron 40.0%
GGTGGGAAAATACAAAGAGA+AGG - tig0017568:4742-4761 Msa1361650:intergenic 40.0%
GACAGATTAAGAATCTCTGG+TGG - tig0017568:4760-4779 Msa1361650:intergenic 40.0%
ACTGGCACAAGAGAAAAGAT+GGG - tig0017568:5106-5125 Msa1361650:intergenic 40.0%
AACTGGCACAAGAGAAAAGA+TGG - tig0017568:5107-5126 Msa1361650:intergenic 40.0%
TCAATATTGAAATCCAGCCG+TGG - tig0017568:5158-5177 Msa1361650:intergenic 40.0%
ACTGTCAGATTCTTCACCAA+CGG + tig0017568:5287-5306 Msa1361650:intron 40.0%
CATTACATCCATCTCAACCA+GGG + tig0017568:5365-5384 Msa1361650:CDS 40.0%
! ATCACTGATTGAATCATCCC+TGG - tig0017568:5385-5404 Msa1361650:intergenic 40.0%
TGTGTAGATTAGTGCACATG+AGG + tig0017568:5636-5655 Msa1361650:intron 40.0%
AGTTTGTACCATCCACATCT+TGG - tig0017568:5829-5848 Msa1361650:intergenic 40.0%
TGCTTATAAATGTGACCGGA+GGG - tig0017568:5867-5886 Msa1361650:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - tig0017568:5868-5887 Msa1361650:intergenic 40.0%
AAGAAAAAGCTTACTCCCTC+TGG - tig0017568:6002-6021 Msa1361650:intergenic 40.0%
ACATTGTTACACGCTCTTGT+AGG + tig0017568:6046-6065 Msa1361650:intron 40.0%
! TGGCTTTTGTTCTTGTCAGA+TGG + tig0017568:6146-6165 Msa1361650:intron 40.0%
! TTTTACAATAGCAGTGGCGG+TGG + tig0017568:2305-2324 Msa1361650:five_prime_UTR 45.0%
TATGTAAGCGTGAGTGAGTG+AGG + tig0017568:2352-2371 Msa1361650:five_prime_UTR 45.0%
! TCTCTCTAAAAGGGAACTGC+AGG + tig0017568:2505-2524 Msa1361650:five_prime_UTR 45.0%
! CTTTCTTTCTTTAGGGAGGG+GGG + tig0017568:2861-2880 Msa1361650:intron 45.0%
! TTTCTTTCTTTAGGGAGGGG+GGG + tig0017568:2862-2881 Msa1361650:intron 45.0%
GACAAAGAGAAAGAGGGAAC+AGG - tig0017568:3026-3045 Msa1361650:intergenic 45.0%
GCAGAGAGACAAAGAGAAAG+AGG - tig0017568:3033-3052 Msa1361650:intergenic 45.0%
ATGCCACCTGATTGGAGATT+TGG + tig0017568:3249-3268 Msa1361650:CDS 45.0%
GTCATGTTCATCTGCCTCAA+TGG + tig0017568:3347-3366 Msa1361650:CDS 45.0%
ATGTTCATCTGCCTCAATGG+TGG + tig0017568:3350-3369 Msa1361650:CDS 45.0%
GACGAATGGTCCCAAAAGTT+AGG - tig0017568:3387-3406 Msa1361650:intergenic 45.0%
! AGGAAAGATGGGTTTGGCTT+TGG + tig0017568:3468-3487 Msa1361650:CDS 45.0%
!!! GGGGATGGTTTTTTACCGAA+TGG + tig0017568:3555-3574 Msa1361650:CDS 45.0%
TTATGGGGTTCCTCAATCCA+TGG + tig0017568:3692-3711 Msa1361650:CDS 45.0%
CCGGTTCAATTCATGGAACT+AGG + tig0017568:3724-3743 Msa1361650:CDS 45.0%
GTTGGACTTCGAGTAGCAAA+TGG + tig0017568:3762-3781 Msa1361650:CDS 45.0%
GGATCATCACTCTCTTGTGT+TGG - tig0017568:3792-3811 Msa1361650:intergenic 45.0%
AGAGAGTGATGATCCGAATG+TGG + tig0017568:3797-3816 Msa1361650:CDS 45.0%
GTAGCTGCTTCAACCACATT+CGG - tig0017568:3813-3832 Msa1361650:intergenic 45.0%
GTGGTTGAAGCAGCTACAAA+AGG + tig0017568:3816-3835 Msa1361650:CDS 45.0%
GTCACCATCTGTTGAGCAAT+TGG + tig0017568:3842-3861 Msa1361650:CDS 45.0%
GTAGCCAATTGCTCAACAGA+TGG - tig0017568:3849-3868 Msa1361650:intergenic 45.0%
GAATGATAAAAGCGAGGGTC+GGG + tig0017568:3887-3906 Msa1361650:CDS 45.0%
TGATTCCGACAGAGGTGAAT+CGG + tig0017568:3956-3975 Msa1361650:CDS 45.0%
ACAAGATGGTTCCCCAATGT+TGG + tig0017568:4004-4023 Msa1361650:CDS 45.0%
AGTGGAGAGCCTTCTATGAA+AGG + tig0017568:4038-4057 Msa1361650:CDS 45.0%
AACCCTGAGAACCAACAGAA+GGG + tig0017568:4238-4257 Msa1361650:CDS 45.0%
GAAGCCTTCATTGTCGAACT+TGG - tig0017568:4274-4293 Msa1361650:intergenic 45.0%
AGTTCGACAATGAAGGCTTC+TGG + tig0017568:4274-4293 Msa1361650:CDS 45.0%
GTTCGACAATGAAGGCTTCT+GGG + tig0017568:4275-4294 Msa1361650:CDS 45.0%
! TTCTGGGAAGAATGCCAAAC+AGG + tig0017568:4291-4310 Msa1361650:CDS 45.0%
TCTGGGAAGAATGCCAAACA+GGG + tig0017568:4292-4311 Msa1361650:CDS 45.0%
TGTATCTTACCCTCTCTGCA+AGG - tig0017568:4396-4415 Msa1361650:intergenic 45.0%
! ATTTTCACTGCAGGTGAGGA+GGG + tig0017568:4473-4492 Msa1361650:intron 45.0%
TGTTGATGTTTGCAGGTCAC+TGG + tig0017568:4637-4656 Msa1361650:intron 45.0%
ATGTTTGCAGGTCACTGGTA+AGG + tig0017568:4642-4661 Msa1361650:intron 45.0%
GTCACTTCAACGACAAGTTG+AGG + tig0017568:4699-4718 Msa1361650:CDS 45.0%
GTGTTGGGAGTTGTAAACGA+TGG - tig0017568:4860-4879 Msa1361650:intergenic 45.0%
GGAAATCCTAGTGTGGATGA+AGG - tig0017568:5319-5338 Msa1361650:intergenic 45.0%
! CTCTAGAGGAAATCCTAGTG+TGG - tig0017568:5326-5345 Msa1361650:intergenic 45.0%
GGTTGAGATGGATGTAATGG+AGG - tig0017568:5364-5383 Msa1361650:intergenic 45.0%
CCTGGTTGAGATGGATGTAA+TGG - tig0017568:5367-5386 Msa1361650:intergenic 45.0%
CCATTACATCCATCTCAACC+AGG + tig0017568:5364-5383 Msa1361650:CDS 45.0%
TGAATCATCCCTGGTTGAGA+TGG - tig0017568:5376-5395 Msa1361650:intergenic 45.0%
TTCTTCGAAGGATATCGGAC+GGG - tig0017568:5423-5442 Msa1361650:intergenic 45.0%
GTTCTTCGAAGGATATCGGA+CGG - tig0017568:5424-5443 Msa1361650:intergenic 45.0%
ACACAGTTAACACCGTTGAG+TGG + tig0017568:5451-5470 Msa1361650:CDS 45.0%
TCCTTGAATCCTCCACTCAA+CGG - tig0017568:5466-5485 Msa1361650:intergenic 45.0%
AGGATTCAAGGAGCCAAATC+AGG + tig0017568:5474-5493 Msa1361650:CDS 45.0%
! TGCTTTAGATGCCTGATGTG+TGG + tig0017568:5744-5763 Msa1361650:intron 45.0%
! GCTTTAGATGCCTGATGTGT+GGG + tig0017568:5745-5764 Msa1361650:intron 45.0%
TCCACATCTTGGCTACTCAT+GGG - tig0017568:5818-5837 Msa1361650:intergenic 45.0%
ATCCACATCTTGGCTACTCA+TGG - tig0017568:5819-5838 Msa1361650:intergenic 45.0%
ATGAGTAGCCAAGATGTGGA+TGG + tig0017568:5818-5837 Msa1361650:CDS 45.0%
!! ACCGGAGGGAGTATTTGTTT+GGG - tig0017568:5853-5872 Msa1361650:intergenic 45.0%
!! TTTCATCTGATTTGCTGCCG+TGG - tig0017568:6074-6093 Msa1361650:intergenic 45.0%
! TTCAAGTTTGGCAAGTCGTG+TGG - tig0017568:6194-6213 Msa1361650:intergenic 45.0%
ACACGACTTGCCAAACTTGA+AGG + tig0017568:6193-6212 Msa1361650:CDS 45.0%
TTGCCAAACTTGAAGGCCTT+GGG + tig0017568:6200-6219 Msa1361650:CDS 45.0%
!! TGAAAATTAAAAAAAAAAAA+AGG - tig0017568:2674-2693 Msa1361650:intergenic 5.0%
!!! ACTTTTTTTTTTTTTTTTTT+TGG + tig0017568:4890-4909 Msa1361650:intron 5.0%
! CAGGGTGCTAAAAGTAGCAC+AGG + tig0017568:2598-2617 Msa1361650:five_prime_UTR 50.0%
! GTTTGAGGTGGATGGAGATG+AGG + tig0017568:3200-3219 Msa1361650:CDS 50.0%
CTAGTGGTATGCCACCTGAT+TGG + tig0017568:3241-3260 Msa1361650:CDS 50.0%
GCACCAAATCTCCAATCAGG+TGG - tig0017568:3255-3274 Msa1361650:intergenic 50.0%
!! GATGGGTTTGGCTTTGGAAG+AGG + tig0017568:3474-3493 Msa1361650:CDS 50.0%
GGAAGAGGTGGTCATGATCA+TGG + tig0017568:3489-3508 Msa1361650:CDS 50.0%
! GTTTTATCGAAAGGGCTGCG+AGG + tig0017568:3625-3644 Msa1361650:CDS 50.0%
!!! AGGTTCTCGTGTTTTGGTGG+AGG + tig0017568:3645-3664 Msa1361650:CDS 50.0%
!!! GGTTCTCGTGTTTTGGTGGA+GGG + tig0017568:3646-3665 Msa1361650:CDS 50.0%
! GCATACATCGCCATGGATTG+AGG - tig0017568:3705-3724 Msa1361650:intergenic 50.0%
CAATCCATGGCGATGTATGC+CGG + tig0017568:3705-3724 Msa1361650:CDS 50.0%
GGACTTCGAGTAGCAAATGG+AGG + tig0017568:3765-3784 Msa1361650:CDS 50.0%
CTTCCCTTCATCTTGAGACC+CGG - tig0017568:3913-3932 Msa1361650:intergenic 50.0%
GATTCCGACAGAGGTGAATC+GGG + tig0017568:3957-3976 Msa1361650:CDS 50.0%
GATGGTTCCCCAATGTTGGA+AGG + tig0017568:4008-4027 Msa1361650:CDS 50.0%
CAACCCTGAGAACCAACAGA+AGG + tig0017568:4237-4256 Msa1361650:CDS 50.0%
!! CACCCTTCTGTTGGTTCTCA+GGG - tig0017568:4243-4262 Msa1361650:intergenic 50.0%
!! TCACCCTTCTGTTGGTTCTC+AGG - tig0017568:4244-4263 Msa1361650:intergenic 50.0%
GTTGTTGGTCACCCTTCTGT+TGG - tig0017568:4252-4271 Msa1361650:intergenic 50.0%
TTACCCTCTCTGCAAGGCTA+TGG - tig0017568:4390-4409 Msa1361650:intergenic 50.0%
! CTGGATTTTCACTGCAGGTG+AGG + tig0017568:4469-4488 Msa1361650:intron 50.0%
! GATTTTCACTGCAGGTGAGG+AGG + tig0017568:4472-4491 Msa1361650:intron 50.0%
TGCAACAGTAAATCCACGGC+TGG + tig0017568:5142-5161 Msa1361650:CDS 50.0%
CAGTTAACACCGTTGAGTGG+AGG + tig0017568:5454-5473 Msa1361650:CDS 50.0%
ACCGTTGAGTGGAGGATTCA+AGG + tig0017568:5462-5481 Msa1361650:CDS 50.0%
CACAGTTCTTGCAGCTGCAA+TGG - tig0017568:5507-5526 Msa1361650:intergenic 50.0%
TTAGATGCCTGATGTGTGGG+CGG + tig0017568:5748-5767 Msa1361650:intron 50.0%
TCCCATGAGTAGCCAAGATG+TGG + tig0017568:5814-5833 Msa1361650:CDS 50.0%
!! CCGGAGGGAGTATTTGTTTG+GGG - tig0017568:5852-5871 Msa1361650:intergenic 50.0%
CCCCAAACAAATACTCCCTC+CGG + tig0017568:5849-5868 Msa1361650:intron 50.0%
!! GACCGGAGGGAGTATTTGTT+TGG - tig0017568:5854-5873 Msa1361650:intergenic 50.0%
ACACGCTCTTGTAGGTACCA+CGG + tig0017568:6054-6073 Msa1361650:intron 50.0%
CTTGCCAAACTTGAAGGCCT+TGG + tig0017568:6199-6218 Msa1361650:CDS 50.0%
TGAGGTGGATGGAGATGAGG+AGG + tig0017568:3203-3222 Msa1361650:CDS 55.0%
!! GGGTTTGGCTTTGGAAGAGG+TGG + tig0017568:3477-3496 Msa1361650:CDS 55.0%
! GCTGCGAGGTTCTCGTGTTT+TGG + tig0017568:3639-3658 Msa1361650:CDS 55.0%
!! GCGAGGTTCTCGTGTTTTGG+TGG + tig0017568:3642-3661 Msa1361650:CDS 55.0%
TGAACCGGCATACATCGCCA+TGG - tig0017568:3712-3731 Msa1361650:intergenic 55.0%
GGAACTAGGGATGCTCTTGC+AGG + tig0017568:3738-3757 Msa1361650:CDS 55.0%
GTCACCCGATTCACCTCTGT+CGG - tig0017568:3964-3983 Msa1361650:intergenic 55.0%
GGTGAATCGGGTGACGATGA+TGG + tig0017568:3969-3988 Msa1361650:CDS 55.0%
! GAATCGGGTGACGATGATGG+TGG + tig0017568:3972-3991 Msa1361650:CDS 55.0%
ACATACATGTCAGGGCTCGC+CGG + tig0017568:4347-4366 Msa1361650:CDS 55.0%
! GGCTGTTTGTTGCTTGACCC+CGG - tig0017568:4369-4388 Msa1361650:intergenic 55.0%
! ACAGCCATAGCCTTGCAGAG+AGG + tig0017568:4383-4402 Msa1361650:CDS 55.0%
! CAGCCATAGCCTTGCAGAGA+GGG + tig0017568:4384-4403 Msa1361650:CDS 55.0%
ACTTGTGCCTGGATGCAGCA+AGG + tig0017568:4530-4549 Msa1361650:CDS 55.0%
AAAGCCACCTTGCTGCATCC+AGG - tig0017568:4540-4559 Msa1361650:intergenic 55.0%
CACTGGTAAGGCAGTGATGC+TGG + tig0017568:4654-4673 Msa1361650:CDS 55.0%
CAGATTCTTCACCAACGGCC+TGG + tig0017568:5292-5311 Msa1361650:intron 55.0%
CCTAGTGTGGATGAAGGACC+AGG - tig0017568:5313-5332 Msa1361650:intergenic 55.0%
CCTGGTCCTTCATCCACACT+AGG + tig0017568:5310-5329 Msa1361650:CDS 55.0%
! TCGGACGGGTTTGCCATGTT+TGG - tig0017568:5409-5428 Msa1361650:intergenic 55.0%
AGGGATGCTCTTGCAGGCGT+TGG + tig0017568:3744-3763 Msa1361650:CDS 60.0%
GATAAAAGCGAGGGTCGGGC+CGG + tig0017568:3891-3910 Msa1361650:CDS 60.0%
ATAAAAGCGAGGGTCGGGCC+GGG + tig0017568:3892-3911 Msa1361650:CDS 60.0%
GGGCCGGGTCTCAAGATGAA+GGG + tig0017568:3907-3926 Msa1361650:CDS 60.0%
!! GGTGACGATGATGGTGGTCG+TGG + tig0017568:3978-3997 Msa1361650:CDS 60.0%
!! GACGATGATGGTGGTCGTGG+TGG + tig0017568:3981-4000 Msa1361650:CDS 60.0%
!! GGTGGTCGTGGTGGACAAGA+TGG + tig0017568:3990-4009 Msa1361650:CDS 60.0%
CATACATGTCAGGGCTCGCC+GGG + tig0017568:4348-4367 Msa1361650:CDS 60.0%
ATACATGTCAGGGCTCGCCG+GGG + tig0017568:4349-4368 Msa1361650:CDS 60.0%
TGTGCCTGGATGCAGCAAGG+TGG + tig0017568:4533-4552 Msa1361650:intron 60.0%
TGGATGAAGGACCAGGCCGT+TGG - tig0017568:5306-5325 Msa1361650:intergenic 60.0%
CGGGCCGGGTCTCAAGATGA+AGG + tig0017568:3906-3925 Msa1361650:CDS 65.0%
AGCTCGTCCGCCCACACATC+AGG - tig0017568:5758-5777 Msa1361650:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0017568 gene 2286 6223 2286 ID=Msa1361650;Name=Msa1361650
tig0017568 mRNA 2286 6223 2286 ID=Msa1361650-mRNA-1;Parent=Msa1361650;Name=Msa1361650-mRNA-1;_AED=0.15;_eAED=0.17;_QI=460|0.88|0.9|1|0.88|0.8|10|0|565
tig0017568 exon 2286 2632 2286 ID=Msa1361650-mRNA-1:exon:12535;Parent=Msa1361650-mRNA-1
tig0017568 exon 2875 2955 2875 ID=Msa1361650-mRNA-1:exon:12536;Parent=Msa1361650-mRNA-1
tig0017568 exon 3151 4094 3151 ID=Msa1361650-mRNA-1:exon:12537;Parent=Msa1361650-mRNA-1
tig0017568 exon 4178 4405 4178 ID=Msa1361650-mRNA-1:exon:12538;Parent=Msa1361650-mRNA-1
tig0017568 exon 4486 4551 4486 ID=Msa1361650-mRNA-1:exon:12539;Parent=Msa1361650-mRNA-1
tig0017568 exon 4652 4720 4652 ID=Msa1361650-mRNA-1:exon:12540;Parent=Msa1361650-mRNA-1
tig0017568 exon 5125 5196 5125 ID=Msa1361650-mRNA-1:exon:12541;Parent=Msa1361650-mRNA-1
tig0017568 exon 5295 5495 5295 ID=Msa1361650-mRNA-1:exon:12542;Parent=Msa1361650-mRNA-1
tig0017568 exon 5752 5839 5752 ID=Msa1361650-mRNA-1:exon:12543;Parent=Msa1361650-mRNA-1
tig0017568 exon 6165 6223 6165 ID=Msa1361650-mRNA-1:exon:12544;Parent=Msa1361650-mRNA-1
tig0017568 five_prime_UTR 2286 2632 2286 ID=Msa1361650-mRNA-1:five_prime_utr;Parent=Msa1361650-mRNA-1
tig0017568 five_prime_UTR 2875 2955 2875 ID=Msa1361650-mRNA-1:five_prime_utr;Parent=Msa1361650-mRNA-1
tig0017568 five_prime_UTR 3151 3182 3151 ID=Msa1361650-mRNA-1:five_prime_utr;Parent=Msa1361650-mRNA-1
tig0017568 CDS 3183 4094 3183 ID=Msa1361650-mRNA-1:cds;Parent=Msa1361650-mRNA-1
tig0017568 CDS 4178 4405 4178 ID=Msa1361650-mRNA-1:cds;Parent=Msa1361650-mRNA-1
tig0017568 CDS 4486 4551 4486 ID=Msa1361650-mRNA-1:cds;Parent=Msa1361650-mRNA-1
tig0017568 CDS 4652 4720 4652 ID=Msa1361650-mRNA-1:cds;Parent=Msa1361650-mRNA-1
tig0017568 CDS 5125 5196 5125 ID=Msa1361650-mRNA-1:cds;Parent=Msa1361650-mRNA-1
tig0017568 CDS 5295 5495 5295 ID=Msa1361650-mRNA-1:cds;Parent=Msa1361650-mRNA-1
tig0017568 CDS 5752 5839 5752 ID=Msa1361650-mRNA-1:cds;Parent=Msa1361650-mRNA-1
tig0017568 CDS 6165 6223 6165 ID=Msa1361650-mRNA-1:cds;Parent=Msa1361650-mRNA-1
Gene Sequence

>Msa1361650

ATGAGTGACAAAGAAAAGTTTGAGGTGGATGGAGATGAGGAGGATCCTATGAGTTATTCTAGTGGTATGCCACCTGATTGGAGATTTGGTGCAAATTCATCTGTTGGGTTGGTTTCAATTGGGAATTCTATGAGTATGAATAGAGGGGATTTTATTGGTTCTTCGTCATGTTCATCTGCCTCAATGGTGGACTCATTTACTCCTAACTTTTGGGACCATTCGTCGAATTCACAAAACTTGGGATTTTGTGACATTAATGGGAGTTCTTCAAATACAATTGGAATAAGGAAAGATGGGTTTGGCTTTGGAAGAGGTGGTCATGATCATGGAACACTTGAAATTGGTTGGAACCAGGCTAATGCTATGATGAAAGGGGATGGTTTTTTACCGAATGGACAAGGTGTTTTTCCTCAGAGTTTATCTCAGTTTCCTACTGATTCTGGTTTTATCGAAAGGGCTGCGAGGTTCTCGTGTTTTGGTGGAGGGAATTTCAGTGATGTAGTGAACGCTTATGGGGTTCCTCAATCCATGGCGATGTATGCCGGTTCAATTCATGGAACTAGGGATGCTCTTGCAGGCGTTGGACTTCGAGTAGCAAATGGAGGACCAACACAAGAGAGTGATGATCCGAATGTGGTTGAAGCAGCTACAAAAGGTGTGTCACCATCTGTTGAGCAATTGGCTACTAGAGAAAGTCCTTTGAAGAATGATAAAAGCGAGGGTCGGGCCGGGTCTCAAGATGAAGGGAAGCAAGCTCTTGTTCAGAATGTTAATGATTCCGACAGAGGTGAATCGGGTGACGATGATGGTGGTCGTGGTGGACAAGATGGTTCCCCAATGTTGGAAGGTACTACTAGTGGAGAGCCTTCTATGAAAGGACTAAACTCGAAGAAAAGGAAAAAAAGTGGACAGGATGCTGATAATGATAAACCCAGTAGAGCTCAAGAACTACAAAATGAAGGTGCAAAGGACAACCCTGAGAACCAACAGAAGGGTGACCAACAACCAAGTTCGACAATGAAGGCTTCTGGGAAGAATGCCAAACAGGGCTCTCAAAATTCTGATCCACCTAAGGAGGAATACATACATGTCAGGGCTCGCCGGGGTCAAGCAACAAACAGCCATAGCCTTGCAGAGAGGGTGAGGAGGGAAAAAATAAGTGAGAGGATGAAGTTTCTTCAAGAACTTGTGCCTGGATGCAGCAAGGTCACTGGTAAGGCAGTGATGCTGGATGAAATCATCAACTATGTACAGTCACTTCAACGACAAGTTGAGTTTTTGTCCATGAAACTTGCAACAGTAAATCCACGGCTGGATTTCAATATTGAAAGCCTTCTTGCTAAAGATATTCTTCACCAACGGCCTGGTCCTTCATCCACACTAGGATTTCCTCTAGAGATGTCAATGAATTTTCCTCCATTACATCCATCTCAACCAGGGATGATTCAATCAGTGATTCCAAACATGGCAAACCCGTCCGATATCCTTCGAAGAACTATTCATACACAGTTAACACCGTTGAGTGGAGGATTCAAGGAGCCAAATCAGATGCCTGATGTGTGGGCGGACGAGCTTCACAATGTTGTACAAATGAGCTTTGCAACAACTGCTCCCATGAGTAGCCAAGATGTGGATGATGGAAATAACTACGGTCAGAGTTTTCCACACGACTTGCCAAACTTGAAGGCCTTGGGG
Protein sequence

>Msa1361650

MSDKEKFEVDGDEEDPMSYSSGMPPDWRFGANSSVGLVSIGNSMSMNRGDFIGSSSCSSASMVDSFTPNFWDHSSNSQNLGFCDINGSSSNTIGIRKDGFGFGRGGHDHGTLEIGWNQANAMMKGDGFLPNGQGVFPQSLSQFPTDSGFIERAARFSCFGGGNFSDVVNAYGVPQSMAMYAGSIHGTRDALAGVGLRVANGGPTQESDDPNVVEAATKGVSPSVEQLATRESPLKNDKSEGRAGSQDEGKQALVQNVNDSDRGESGDDDGGRGGQDGSPMLEGTTSGEPSMKGLNSKKRKKSGQDADNDKPSRAQELQNEGAKDNPENQQKGDQQPSSTMKASGKNAKQGSQNSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIESLLAKDILHQRPGPSSTLGFPLEMSMNFPPLHPSQPGMIQSVIPNMANPSDILRRTIHTQLTPLSGGFKEPNQMPDVWADELHNVVQMSFATTAPMSSQDVDDGNNYGQSFPHDLPNLKALG