AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1340650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1340650 MtrunA17_Chr2g0297021 99.649 285 1 0 1 285 1 285 0.0 590
Msa1340650 MtrunA17_Chr3g0120311 83.673 245 36 1 13 257 15 255 3.01e-156 437
Msa1340650 MtrunA17_Chr4g0032051 87.429 175 19 2 111 284 20 192 1.52e-96 282
Msa1340650 MtrunA17_Chr4g0032041 98.630 73 1 0 66 138 1 73 4.75e-47 156
Msa1340650 MtrunA17_Chr4g0032031 83.051 59 9 1 1 59 1 58 2.92e-29 105
Msa1340650 MtrunA17_Chr7g0245591 31.429 245 148 7 11 248 50 281 2.93e-28 112
Msa1340650 MtrunA17_Chr7g0245591 36.957 92 54 2 18 107 258 347 4.76e-12 65.9
Msa1340650 MtrunA17_Chr8g0389111 42.553 141 73 3 16 152 65 201 3.00e-26 106
Msa1340650 MtrunA17_Chr8g0389111 35.484 155 93 4 18 169 256 406 4.75e-19 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1340650 AT2G32260.1 78.652 267 52 2 12 277 31 293 2.89e-156 439
Msa1340650 AT2G32260.2 77.637 237 48 2 42 277 12 244 9.09e-135 382
Msa1340650 AT2G38670.1 31.304 230 139 6 14 237 53 269 3.31e-28 112
Msa1340650 AT2G38670.1 32.692 156 100 3 18 170 257 410 2.64e-17 81.6

Find 85 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGCTATTGGAAAATTTA+AGG 0.163999 tig0004309:+6006 Msa1340650:CDS
TTGATCTAAAAGCTGAAATT+TGG 0.212003 tig0004309:+8448 Msa1340650:three_prime_UTR
CATATTCCTACCTTTGGATT+TGG 0.220095 tig0004309:+8417 Msa1340650:three_prime_UTR
CTTATACAGGTTAAGGCTAT+TGG 0.232230 tig0004309:+5995 Msa1340650:intron
TCCAACCATATTCCTACCTT+TGG 0.332225 tig0004309:+8411 Msa1340650:three_prime_UTR
TTTGCAATGGATCCTTGATT+TGG 0.341191 tig0004309:-8665 None:intergenic
TATGGTAATGGTTCAGAATC+TGG 0.342345 tig0004309:-8142 None:intergenic
CCAAACACATATCTCCTTGT+TGG 0.358023 tig0004309:+3015 Msa1340650:CDS
CAAATCCAAAGGTAGGAATA+TGG 0.372660 tig0004309:-8416 None:intergenic
TTGATTACCCACGGCACATC+TGG 0.373662 tig0004309:-4429 None:intergenic
CCAGTATGTAATGCGTAATC+TGG 0.373754 tig0004309:+6093 Msa1340650:CDS
TGCACTGTTGGAGAGAATCT+TGG 0.376766 tig0004309:-8383 None:intergenic
CTTTGCTTGTTCAAGAGAAC+GGG 0.376996 tig0004309:-2487 None:intergenic
TTCGTATATGCAATGCAATA+TGG 0.379980 tig0004309:+8200 Msa1340650:three_prime_UTR
GAGAATCTTGGGTTGGAACT+TGG 0.399226 tig0004309:-8371 None:intergenic
TAACTGTAAAATATTAGATA+TGG 0.411830 tig0004309:+8177 Msa1340650:three_prime_UTR
ATATGCAATGCAATATGGTT+TGG 0.412593 tig0004309:+8205 Msa1340650:three_prime_UTR
ATTGCAAAACTAAAGAATAT+AGG 0.414215 tig0004309:+8680 Msa1340650:three_prime_UTR
CCAGATTACGCATTACATAC+TGG 0.416241 tig0004309:-6093 None:intergenic
CCATCAGCATAAACACGAAC+AGG 0.422644 tig0004309:-2435 None:intergenic
AATGTGAAAATATGTTTGAT+TGG 0.429677 tig0004309:+8549 Msa1340650:three_prime_UTR
TGAAGAAGGATGCCACAAAA+TGG 0.436374 tig0004309:+7836 Msa1340650:CDS
GGAACAGTGAGAAGAATTGC+TGG 0.441857 tig0004309:+7750 Msa1340650:CDS
ATTTACGATCTCTTTCACTT+TGG 0.443426 tig0004309:+2459 Msa1340650:CDS
AATGCAGATCGATTAGTTGC+TGG 0.449023 tig0004309:+7798 Msa1340650:CDS
GCACTGTTGGAGAGAATCTT+GGG 0.457592 tig0004309:-8382 None:intergenic
CACAGAGATAGTTATGGTAA+TGG 0.463979 tig0004309:-8154 None:intergenic
CAGTTACACAGAGATAGTTA+TGG 0.466530 tig0004309:-8160 None:intergenic
CCAACAAGGAGATATGTGTT+TGG 0.467300 tig0004309:-3015 None:intergenic
CCTGTTCGTGTTTATGCTGA+TGG 0.469877 tig0004309:+2435 Msa1340650:CDS
ATCTCTTCTTTATGATGAGT+GGG 0.482968 tig0004309:+8036 Msa1340650:CDS
TGTGCCGTGGGTAATCAATC+AGG 0.490691 tig0004309:+4434 Msa1340650:CDS
GAACAAGATGACTCTGAAGT+TGG 0.491101 tig0004309:+2399 Msa1340650:CDS
TTCAATGTTCAGAGTCAAAA+CGG 0.491199 tig0004309:-2348 None:intergenic
GCAAGAGACTGTAGGAAAGA+AGG 0.492142 tig0004309:+6354 Msa1340650:CDS
AATTCAAATTCGAGGAGATA+TGG 0.492609 tig0004309:+8341 Msa1340650:three_prime_UTR
ACAACTCATATCACTTTGAC+AGG 0.496623 tig0004309:-8265 None:intergenic
TTTCTCGAGATGTTTGAAGA+AGG 0.505057 tig0004309:+7822 Msa1340650:CDS
AATCTCTTCTTTATGATGAG+TGG 0.507907 tig0004309:+8035 Msa1340650:CDS
TATGCTGATACAAGTGGAGC+TGG 0.511409 tig0004309:+5675 Msa1340650:CDS
CTTGTTCAAGAGAACGGGCA+TGG 0.517970 tig0004309:-2482 None:intergenic
TGAAGAAATTGACCAAATCA+AGG 0.523865 tig0004309:+8653 Msa1340650:three_prime_UTR
TCTTTGCTTGTTCAAGAGAA+CGG 0.524315 tig0004309:-2488 None:intergenic
TGCACCATGCAACCGTTGTA+CGG 0.527175 tig0004309:-8306 None:intergenic
CATATAAACTCCAGTATACC+AGG 0.536734 tig0004309:+8723 Msa1340650:three_prime_UTR
TCCAAAGGTAGGAATATGGT+TGG 0.540697 tig0004309:-8412 None:intergenic
CATAGTTATGCTGATACAAG+TGG 0.557570 tig0004309:+5669 Msa1340650:intron
TGAGATCACACACAAGTACA+AGG 0.560848 tig0004309:+3050 Msa1340650:CDS
TTTGGCTGCATTGACTGTGC+AGG 0.561734 tig0004309:+8466 Msa1340650:three_prime_UTR
GAAAAGATTGAGAATGAACA+TGG 0.563205 tig0004309:+6297 Msa1340650:CDS
GGATCGTGGTTATTCAAGAA+AGG 0.563355 tig0004309:+6114 Msa1340650:CDS
GGTTGGACGGACTGCACTGT+TGG 0.568445 tig0004309:-8395 None:intergenic
AAGGAAACAAAGAGGACTGA+AGG 0.570979 tig0004309:+6025 Msa1340650:CDS
TGTTGGAGAGAATCTTGGGT+TGG 0.573339 tig0004309:-8378 None:intergenic
CTGGGATGAACCGTACTGAA+TGG 0.573855 tig0004309:+7769 Msa1340650:CDS
AGGTAACGAATTCAAATTCG+AGG 0.574904 tig0004309:+8333 Msa1340650:three_prime_UTR
ATCTTCCATTGCACAAGACT+AGG 0.580708 tig0004309:-8515 None:intergenic
TGGGATGAACCGTACTGAAT+GGG 0.582067 tig0004309:+7770 Msa1340650:CDS
TATCATAATGAGAATCATCA+AGG 0.585536 tig0004309:+6063 Msa1340650:CDS
AAGTTATTCCAGATGTGCCG+TGG 0.587410 tig0004309:+4421 Msa1340650:CDS
ACAACCGTACAACGGTTGCA+TGG 0.589259 tig0004309:+8302 Msa1340650:three_prime_UTR
AACTCCTGATTGATTACCCA+CGG 0.589451 tig0004309:-4438 None:intergenic
AAGAAACAGCAAGAGACTGT+AGG 0.592810 tig0004309:+6346 Msa1340650:CDS
TGATACAAGTGGAGCTGGAA+AGG 0.599993 tig0004309:+5680 Msa1340650:CDS
ATTGACTGTGCAGGTTGTAG+AGG 0.601482 tig0004309:+8475 Msa1340650:three_prime_UTR
GCTAGGTGTTAGCTATGTCA+AGG 0.608221 tig0004309:+6138 Msa1340650:CDS
TACAATCCAAATCCAAAGGT+AGG 0.608904 tig0004309:-8423 None:intergenic
TATGACCTAGTCTTGTGCAA+TGG 0.611097 tig0004309:+8510 Msa1340650:three_prime_UTR
CAAGCATAAAATTGACTATG+TGG 0.611838 tig0004309:+4467 Msa1340650:CDS
GAAAATTTAAGGAAACAAAG+AGG 0.614590 tig0004309:+6017 Msa1340650:CDS
CAGAATTCAAGAACAGCTGA+AGG 0.615936 tig0004309:+8000 Msa1340650:CDS
GAACAGTGAGAAGAATTGCT+GGG 0.618852 tig0004309:+7751 Msa1340650:CDS
CATCACTGCAGCATCCAACA+AGG 0.622451 tig0004309:-3029 None:intergenic
GGTTATTCAAGAAAGGAGCT+AGG 0.624474 tig0004309:+6121 Msa1340650:CDS
AAGGTACAATCCAAATCCAA+AGG 0.626057 tig0004309:-8427 None:intergenic
AAGGTAGGAATATGGTTGGA+CGG 0.628552 tig0004309:-8408 None:intergenic
AAAAGATTGAGAATGAACAT+GGG 0.642829 tig0004309:+6298 Msa1340650:CDS
ATATGAGTTGTGATCTAACG+AGG 0.653946 tig0004309:+8277 Msa1340650:three_prime_UTR
GATTCTCATTATGATATCAG+AGG 0.655348 tig0004309:-6056 None:intergenic
AGTTATTCCAGATGTGCCGT+GGG 0.663969 tig0004309:+4422 Msa1340650:CDS
ACGGTTGCATGGTGCAACAG+AGG 0.674103 tig0004309:+8313 Msa1340650:three_prime_UTR
GTAATGCGTAATCTGGATCG+TGG 0.679784 tig0004309:+6100 Msa1340650:CDS
ACGAGGGTACAACCGTACAA+CGG 0.680986 tig0004309:+8294 Msa1340650:three_prime_UTR
GAGATCACACACAAGTACAA+GGG 0.705592 tig0004309:+3051 Msa1340650:CDS
TATGAGTTGTGATCTAACGA+GGG 0.748059 tig0004309:+8278 Msa1340650:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTATTAATAAATATT+TGG - tig0004309:7001-7020 None:intergenic 0.0%
!! ATAAATAAACATAAAAAAGA+GGG - tig0004309:3714-3733 None:intergenic 10.0%
!! AATAAATAAACATAAAAAAG+AGG - tig0004309:3715-3734 None:intergenic 10.0%
!! TTTATATGACTTATTTAAAT+TGG + tig0004309:4287-4306 Msa1340650:intron 10.0%
!! TATATATTTACAAAATACAA+TGG - tig0004309:6477-6496 None:intergenic 10.0%
!!! TAATAATTAATTGGTTTAAT+GGG - tig0004309:6882-6901 None:intergenic 10.0%
!! ACAATTAACTAATAATTAAT+TGG - tig0004309:6891-6910 None:intergenic 10.0%
!!! ATTAATAAATATTTGGTAAT+TGG - tig0004309:6994-7013 None:intergenic 10.0%
!!! TTATTGATTAATAACTATAT+TGG + tig0004309:7016-7035 Msa1340650:intron 10.0%
!!! TTAACATAGAAAAATATTTT+GGG - tig0004309:7085-7104 None:intergenic 10.0%
!!! GTTTTTTGTTTTTGTTTTTA+AGG + tig0004309:2710-2729 Msa1340650:intron 15.0%
!!! TTTTTTTTGTTGTGTTTTTA+AGG + tig0004309:2736-2755 Msa1340650:intron 15.0%
!!! TTTTTGTTTTGTTGTTTTTA+AGG + tig0004309:2766-2785 Msa1340650:intron 15.0%
!!! TTGTTTTTAAGGTTTTTTTT+TGG + tig0004309:2777-2796 Msa1340650:intron 15.0%
!!! TGTTTTTAAGGTTTTTTTTT+GGG + tig0004309:2778-2797 Msa1340650:intron 15.0%
!! ATAATTTAACCAAAGAAAAA+AGG - tig0004309:3147-3166 None:intergenic 15.0%
!! TTTATTAATTATACAACAGT+TGG - tig0004309:3331-3350 None:intergenic 15.0%
!!! TATTTCATCTAGTTATATTT+TGG + tig0004309:4186-4205 Msa1340650:intron 15.0%
!!! AACAAAAGAAAACAAATTTT+TGG - tig0004309:4229-4248 None:intergenic 15.0%
!! ATTTAATTCCAGTAAAAAAA+AGG - tig0004309:4906-4925 None:intergenic 15.0%
!!! CTTTTTCTTAAATTTACATA+AGG - tig0004309:5195-5214 None:intergenic 15.0%
!! TCATATACAACTAAATTAAA+AGG - tig0004309:5742-5761 None:intergenic 15.0%
!! AAAGTTTAAACAAATAAGAA+AGG - tig0004309:5857-5876 None:intergenic 15.0%
!!! CTAATAATTAATTGGTTTAA+TGG - tig0004309:6883-6902 None:intergenic 15.0%
!!! AAAATAAAACGAGTATTTTT+GGG - tig0004309:6926-6945 None:intergenic 15.0%
!!! AAAAATAAAACGAGTATTTT+TGG - tig0004309:6927-6946 None:intergenic 15.0%
!!! CTTAACATAGAAAAATATTT+TGG - tig0004309:7086-7105 None:intergenic 15.0%
!!! TGCAATAATATAAATTTTGT+AGG + tig0004309:7144-7163 Msa1340650:intron 15.0%
!! TAACTGTAAAATATTAGATA+TGG + tig0004309:8177-8196 Msa1340650:three_prime_UTR 15.0%
!! AAAAAAACAAGAAACAAAAG+AGG + tig0004309:2298-2317 Msa1340650:five_prime_UTR 20.0%
!! AAAATGAAATTGAGAAAGAT+GGG - tig0004309:2585-2604 None:intergenic 20.0%
!! AAAAATGAAATTGAGAAAGA+TGG - tig0004309:2586-2605 None:intergenic 20.0%
!! GGACTAAATATCATAAAAAA+GGG - tig0004309:2622-2641 None:intergenic 20.0%
!! TGGACTAAATATCATAAAAA+AGG - tig0004309:2623-2642 None:intergenic 20.0%
!! TAAAAATCCTAATTGCAAAT+GGG - tig0004309:2860-2879 None:intergenic 20.0%
!! ATAAAAATCCTAATTGCAAA+TGG - tig0004309:2861-2880 None:intergenic 20.0%
!!! ATTTGCAATTAGGATTTTTA+TGG + tig0004309:2860-2879 Msa1340650:intron 20.0%
!!! AATTAGGATTTTTATGGTTT+TGG + tig0004309:2866-2885 Msa1340650:intron 20.0%
!!! TTTTGTTGTTTGTTAATTGA+AGG + tig0004309:2989-3008 Msa1340650:intron 20.0%
!!! TTTCTTTTTCCTTTTTTCTT+TGG + tig0004309:3135-3154 Msa1340650:intron 20.0%
!!! CTATTATAGGTTTTACATTT+CGG + tig0004309:3519-3538 Msa1340650:intron 20.0%
!!! GAAATTTTTCATGTTATAAC+AGG - tig0004309:3784-3803 None:intergenic 20.0%
!! TAAGTAAATAGAAAATGAGA+AGG - tig0004309:4342-4361 None:intergenic 20.0%
!! AATAAAAAGAGAAATATAGC+TGG - tig0004309:4530-4549 None:intergenic 20.0%
!!! GAAACAAGAAAACTTTTAAA+AGG + tig0004309:4679-4698 Msa1340650:intron 20.0%
!! ATTAAATAGGAGACAAAAAA+GGG - tig0004309:4775-4794 None:intergenic 20.0%
!! AAGATCATAACAGATTAAAT+AGG - tig0004309:4788-4807 None:intergenic 20.0%
!!! AATTACTTCCTTTTTTTTAC+TGG + tig0004309:4895-4914 Msa1340650:intron 20.0%
!! AAATATATAGTCAATCATGT+AGG - tig0004309:5087-5106 None:intergenic 20.0%
!!! ATATTTTTAAGTGAATAGTG+TGG + tig0004309:5101-5120 Msa1340650:intron 20.0%
!! ACTTTGTTGAAAATGTTATT+TGG + tig0004309:5153-5172 Msa1340650:intron 20.0%
!! TAATATAGTAGTAGTGATAA+TGG - tig0004309:5494-5513 None:intergenic 20.0%
!! AACCTGTATAAGAAATTAAT+AGG - tig0004309:5987-6006 None:intergenic 20.0%
!! TTAATTTCTTATACAGGTTA+AGG + tig0004309:5988-6007 Msa1340650:intron 20.0%
!! AAATATATAGTTTAATTGCC+TGG + tig0004309:6488-6507 Msa1340650:intron 20.0%
!!! TTTATTCCTATTACTAGTTT+GGG + tig0004309:6530-6549 Msa1340650:intron 20.0%
!!! TTTTTAAGTTTTTCAAAGCT+GGG - tig0004309:6795-6814 None:intergenic 20.0%
!!! TTTTTTAAGTTTTTCAAAGC+TGG - tig0004309:6796-6815 None:intergenic 20.0%
!!! CATCTTAAAGCTTATTTTTA+GGG - tig0004309:7879-7898 None:intergenic 20.0%
!!! TCATCTTAAAGCTTATTTTT+AGG - tig0004309:7880-7899 None:intergenic 20.0%
!! AATGTGAAAATATGTTTGAT+TGG + tig0004309:8549-8568 Msa1340650:three_prime_UTR 20.0%
!!! TATATTCTTTAGTTTTGCAA+TGG - tig0004309:8681-8700 None:intergenic 20.0%
!! ATTGCAAAACTAAAGAATAT+AGG + tig0004309:8680-8699 Msa1340650:three_prime_UTR 20.0%
! TGAAATGAAGCAAAAGAAAA+AGG - tig0004309:2538-2557 None:intergenic 25.0%
! AACCCAAAAGAACAAAAAAT+GGG - tig0004309:2648-2667 None:intergenic 25.0%
! AAACCCAAAAGAACAAAAAA+TGG - tig0004309:2649-2668 None:intergenic 25.0%
! AAAAAATTGAAGAGTTTGTG+CGG + tig0004309:3348-3367 Msa1340650:intron 25.0%
! TAATAGATTGATGAAGTGAA+CGG + tig0004309:3929-3948 Msa1340650:intron 25.0%
! AAAAGTAAACACGAGATTAT+AGG + tig0004309:3967-3986 Msa1340650:intron 25.0%
! ATTATGTCTGGTCAAAATAT+TGG + tig0004309:4112-4131 Msa1340650:intron 25.0%
!!! TATCCTCTTTTAATTGCTTA+CGG + tig0004309:4141-4160 Msa1340650:intron 25.0%
!!! TTCATCTAGTTATATTTTGG+AGG + tig0004309:4189-4208 Msa1340650:intron 25.0%
!!! TCATCTAGTTATATTTTGGA+GGG + tig0004309:4190-4209 Msa1340650:intron 25.0%
! TTACTTATTTGCTTTCACTA+TGG + tig0004309:4355-4374 Msa1340650:intron 25.0%
! TTATCAGCATTCTAAATTTG+TGG + tig0004309:4550-4569 Msa1340650:intron 25.0%
! TTAAATAGGAGACAAAAAAG+GGG - tig0004309:4774-4793 None:intergenic 25.0%
! GATTAAATAGGAGACAAAAA+AGG - tig0004309:4776-4795 None:intergenic 25.0%
!!! ATGATCTTTGTTTTCTGTTT+TGG + tig0004309:4800-4819 Msa1340650:intron 25.0%
! AAAAATATCATGTGAGAAGA+GGG - tig0004309:5042-5061 None:intergenic 25.0%
! AAAAAATATCATGTGAGAAG+AGG - tig0004309:5043-5062 None:intergenic 25.0%
!!! TCTTCTCACATGATATTTTT+TGG + tig0004309:5042-5061 Msa1340650:intron 25.0%
!!! CTTCTCACATGATATTTTTT+GGG + tig0004309:5043-5062 Msa1340650:intron 25.0%
! ATCCACAAAGTTCTTATATA+TGG + tig0004309:5610-5629 Msa1340650:intron 25.0%
! CTATGGTAACAAAATAACAA+AGG - tig0004309:5654-5673 None:intergenic 25.0%
! TGCCTATTAATTTCTTATAC+AGG + tig0004309:5982-6001 Msa1340650:intron 25.0%
! TAAGGCTATTGGAAAATTTA+AGG + tig0004309:6006-6025 Msa1340650:CDS 25.0%
! GAAAATTTAAGGAAACAAAG+AGG + tig0004309:6017-6036 Msa1340650:CDS 25.0%
! TATCATAATGAGAATCATCA+AGG + tig0004309:6063-6082 Msa1340650:CDS 25.0%
!! ATACATGATCTCTTATTTGT+AGG + tig0004309:6273-6292 Msa1340650:intron 25.0%
! AAAAGATTGAGAATGAACAT+GGG + tig0004309:6298-6317 Msa1340650:CDS 25.0%
! GATCTATAATAAGATAGTTC+AGG - tig0004309:6393-6412 None:intergenic 25.0%
! TATCTTATTATAGATCGACA+AGG + tig0004309:6397-6416 Msa1340650:intron 25.0%
! CTTTATTCCTATTACTAGTT+TGG + tig0004309:6529-6548 Msa1340650:intron 25.0%
!!! ACAAAAAAAACGCGTTTTTT+GGG - tig0004309:6830-6849 None:intergenic 25.0%
!!! AACAAAAAAAACGCGTTTTT+TGG - tig0004309:6831-6850 None:intergenic 25.0%
!! TATTTGGTAATTGGTGTAAT+AGG - tig0004309:6985-7004 None:intergenic 25.0%
!!! CATAGAAAAATATTTTGGGA+AGG - tig0004309:7081-7100 None:intergenic 25.0%
! ATGACCTAAAGAGAATTTAT+AGG + tig0004309:7373-7392 Msa1340650:intron 25.0%
! ATGTCCTATAAATTCTCTTT+AGG - tig0004309:7380-7399 None:intergenic 25.0%
! TAAAGAGAATTTATAGGACA+TGG + tig0004309:7379-7398 Msa1340650:intron 25.0%
! AAAGAGAATTTATAGGACAT+GGG + tig0004309:7380-7399 Msa1340650:intron 25.0%
! CAAATGTCTATCAAAAAACA+TGG - tig0004309:7542-7561 None:intergenic 25.0%
! ATCATTTCCTAGTAATTCAT+TGG - tig0004309:7604-7623 None:intergenic 25.0%
! AATGAATTACTAGGAAATGA+TGG + tig0004309:7603-7622 Msa1340650:intron 25.0%
! ATAGTGTCTTAATAATGCAA+AGG - tig0004309:7701-7720 None:intergenic 25.0%
!! AAATTTCAGCTTTTAGATCA+AGG - tig0004309:8449-8468 None:intergenic 25.0%
! TTGATCTAAAAGCTGAAATT+TGG + tig0004309:8448-8467 Msa1340650:three_prime_UTR 25.0%
! TGCAAAAAAGACTTAACATT+TGG - tig0004309:8615-8634 None:intergenic 25.0%
AATGAGAGAGTAAAAAAGAG+AGG + tig0004309:2272-2291 Msa1340650:five_prime_UTR 30.0%
TTCAATGTTCAGAGTCAAAA+CGG - tig0004309:2351-2370 None:intergenic 30.0%
ATTTACGATCTCTTTCACTT+TGG + tig0004309:2459-2478 Msa1340650:CDS 30.0%
ATGAAGCAAAAGAAAAAGGA+GGG - tig0004309:2534-2553 None:intergenic 30.0%
AATGAAGCAAAAGAAAAAGG+AGG - tig0004309:2535-2554 None:intergenic 30.0%
AAAAGAACAAAAAATGGGGT+TGG - tig0004309:2643-2662 None:intergenic 30.0%
!!! AACCCCATTTTTTGTTCTTT+TGG + tig0004309:2642-2661 Msa1340650:intron 30.0%
!!! ACCCCATTTTTTGTTCTTTT+GGG + tig0004309:2643-2662 Msa1340650:intron 30.0%
ACCCAAAAGAACAAAAAATG+GGG - tig0004309:2647-2666 None:intergenic 30.0%
!!! TTTTGTTCTTTTGGGTTTGT+TGG + tig0004309:2651-2670 Msa1340650:intron 30.0%
!!! TTGGGTGTTGTTTATGATTT+TGG + tig0004309:2796-2815 Msa1340650:intron 30.0%
TTGATTTCCCATTTGCAATT+AGG + tig0004309:2850-2869 Msa1340650:intron 30.0%
!! TGATGAAAGTGTCTATGATT+TGG + tig0004309:2891-2910 Msa1340650:intron 30.0%
!!! GATTTGGTTTTTGTTCTTGT+TGG + tig0004309:2907-2926 Msa1340650:intron 30.0%
TGTAGAATAGTAGATGTATC+AGG + tig0004309:3229-3248 Msa1340650:intron 30.0%
AAAAATTGAAGAGTTTGTGC+GGG + tig0004309:3349-3368 Msa1340650:intron 30.0%
! TTATAGGTTTTACATTTCGG+CGG + tig0004309:3522-3541 Msa1340650:intron 30.0%
TAAAGAATATGGTCGAGATT+TGG + tig0004309:3555-3574 Msa1340650:intron 30.0%
AAAAGAGGGAAAAGAAAATC+TGG - tig0004309:3700-3719 None:intergenic 30.0%
AAATTTCATCCTAACCAGTA+AGG + tig0004309:3797-3816 Msa1340650:intron 30.0%
AATTTCATCCTAACCAGTAA+GGG + tig0004309:3798-3817 Msa1340650:intron 30.0%
!! AATAGTCAACAGAAGTATCA+TGG - tig0004309:3901-3920 None:intergenic 30.0%
! ATCTTTAAAGATCGTGTTTG+CGG + tig0004309:4030-4049 Msa1340650:intron 30.0%
! TTCGTAATGTCAAAGTACTT+TGG + tig0004309:4079-4098 Msa1340650:intron 30.0%
ACTAGATGAAATAACATGAC+AGG - tig0004309:4179-4198 None:intergenic 30.0%
AACTCTTAAAATCTTACGAG+TGG + tig0004309:4249-4268 Msa1340650:intron 30.0%
TATTTGCTTTCACTATGGAT+TGG + tig0004309:4360-4379 Msa1340650:intron 30.0%
CAAGCATAAAATTGACTATG+TGG + tig0004309:4467-4486 Msa1340650:CDS 30.0%
! CAAATATCTTCATCCTTTTC+TGG + tig0004309:4746-4765 Msa1340650:intron 30.0%
CTTTAGTAGTCATTCAATTC+TGG - tig0004309:4952-4971 None:intergenic 30.0%
AGTTATGTGCAAACTATTCA+TGG + tig0004309:5213-5232 Msa1340650:intron 30.0%
TGTTAAACTCTGTTCTTCAT+AGG + tig0004309:5281-5300 Msa1340650:intron 30.0%
TCATAGTAGCTTCTTAAGTT+AGG + tig0004309:5341-5360 Msa1340650:intron 30.0%
! GTCATTTGTTGAATGAGTAT+AGG + tig0004309:5363-5382 Msa1340650:intron 30.0%
TCATACTTCTATTCAATCTG+TGG + tig0004309:5548-5567 Msa1340650:intron 30.0%
CATACTTCTATTCAATCTGT+GGG + tig0004309:5549-5568 Msa1340650:intron 30.0%
GACCATATATAAGAACTTTG+TGG - tig0004309:5615-5634 None:intergenic 30.0%
CATAATCAAAGAGACATTGT+TGG - tig0004309:5813-5832 None:intergenic 30.0%
TGTTTCCTCAGTATATTTCT+TGG + tig0004309:5881-5900 Msa1340650:intron 30.0%
CTGTCATTATGTATCAGAAT+AGG + tig0004309:5910-5929 Msa1340650:intron 30.0%
! ATGGAAGCTTGAAAATTTTG+AGG - tig0004309:5951-5970 None:intergenic 30.0%
AATAGGCATAAGATCATCAA+TGG - tig0004309:5970-5989 None:intergenic 30.0%
GATTCTCATTATGATATCAG+AGG - tig0004309:6059-6078 None:intergenic 30.0%
CAGAACAATGAAACACATAT+GGG - tig0004309:6198-6217 None:intergenic 30.0%
ACAGAACAATGAAACACATA+TGG - tig0004309:6199-6218 None:intergenic 30.0%
GAAAAGATTGAGAATGAACA+TGG + tig0004309:6297-6316 Msa1340650:CDS 30.0%
ATTGAACCCAAACTAGTAAT+AGG - tig0004309:6539-6558 None:intergenic 30.0%
!!! TAAAACGAGTATTTTTGGGA+AGG - tig0004309:6922-6941 None:intergenic 30.0%
!!! TCGTTTTATTTTTGTTGACC+TGG + tig0004309:6934-6953 Msa1340650:intron 30.0%
CAAACTCAGATAATTCTAAC+AGG - tig0004309:7257-7276 None:intergenic 30.0%
! TTTGGAGTATGAACAAATGT+GGG - tig0004309:7300-7319 None:intergenic 30.0%
! ATTTGGAGTATGAACAAATG+TGG - tig0004309:7301-7320 None:intergenic 30.0%
! ATACTCCAAATGTTCAGTTT+TGG + tig0004309:7310-7329 Msa1340650:intron 30.0%
! TACTCCAAATGTTCAGTTTT+GGG + tig0004309:7311-7330 Msa1340650:intron 30.0%
TCTCTTTAGGTCATATTTCT+AGG - tig0004309:7367-7386 None:intergenic 30.0%
!!! CTTAAAGCTTATTTTTAGGG+AGG - tig0004309:7876-7895 None:intergenic 30.0%
AATCTCTTCTTTATGATGAG+TGG + tig0004309:8035-8054 Msa1340650:CDS 30.0%
ATCTCTTCTTTATGATGAGT+GGG + tig0004309:8036-8055 Msa1340650:CDS 30.0%
TTCGTATATGCAATGCAATA+TGG + tig0004309:8200-8219 Msa1340650:three_prime_UTR 30.0%
ATATGCAATGCAATATGGTT+TGG + tig0004309:8205-8224 Msa1340650:three_prime_UTR 30.0%
AATTCAAATTCGAGGAGATA+TGG + tig0004309:8341-8360 Msa1340650:three_prime_UTR 30.0%
!!! TTTTTTGCAAGCACTTTGAT+TGG + tig0004309:8626-8645 Msa1340650:three_prime_UTR 30.0%
TGAAGAAATTGACCAAATCA+AGG + tig0004309:8653-8672 Msa1340650:three_prime_UTR 30.0%
TCTTTGCTTGTTCAAGAGAA+CGG - tig0004309:2491-2510 None:intergenic 35.0%
!!! TTTGGGTTTGTTGGTTTTCA+TGG + tig0004309:2660-2679 Msa1340650:intron 35.0%
!!! AATGGTTTTTTGCGGTTCAA+TGG + tig0004309:3409-3428 Msa1340650:intron 35.0%
AGTTCAGATGTGGCTATTAT+AGG + tig0004309:3506-3525 Msa1340650:intron 35.0%
GTGTGGGAGAATAAAGAATA+TGG + tig0004309:3544-3563 Msa1340650:intron 35.0%
AAGTTTGATACCTGATGACA+TGG + tig0004309:3758-3777 Msa1340650:intron 35.0%
ATTTCATCCTAACCAGTAAG+GGG + tig0004309:3799-3818 Msa1340650:intron 35.0%
! GCAAACACGATCTTTAAAGA+TGG - tig0004309:4031-4050 None:intergenic 35.0%
AGGTCGAATATACTGTACTT+GGG - tig0004309:4322-4341 None:intergenic 35.0%
AAGGTCGAATATACTGTACT+TGG - tig0004309:4323-4342 None:intergenic 35.0%
AAGAGAAATATAGCTGGACT+GGG - tig0004309:4524-4543 None:intergenic 35.0%
AAAGAGAAATATAGCTGGAC+TGG - tig0004309:4525-4544 None:intergenic 35.0%
!! TCTGGCTTTAAAGTTCTTGA+AGG - tig0004309:4934-4953 None:intergenic 35.0%
CTGTTATATTGCCTCAGTAA+AGG + tig0004309:5242-5261 Msa1340650:intron 35.0%
TTATATTGCCTCAGTAAAGG+AGG + tig0004309:5245-5264 Msa1340650:intron 35.0%
AGAACAGAGTTTAACACGAA+AGG - tig0004309:5277-5296 None:intergenic 35.0%
CACTTGTATCAGCATAACTA+TGG - tig0004309:5671-5690 None:intergenic 35.0%
CATAGTTATGCTGATACAAG+TGG + tig0004309:5669-5688 Msa1340650:intron 35.0%
TTAAGATGAATGACACCAGA+GGG - tig0004309:5785-5804 None:intergenic 35.0%
ATTAAGATGAATGACACCAG+AGG - tig0004309:5786-5805 None:intergenic 35.0%
CTTATACAGGTTAAGGCTAT+TGG + tig0004309:5995-6014 Msa1340650:intron 35.0%
AATAAAGAAGCCCCAAGAAA+CGG - tig0004309:6516-6535 None:intergenic 35.0%
! ATTTTGTCTACCATGCTAAC+AGG - tig0004309:6580-6599 None:intergenic 35.0%
TTATTGCCTAGGGATGTATT+GGG - tig0004309:7049-7068 None:intergenic 35.0%
ATTATTGCCTAGGGATGTAT+TGG - tig0004309:7050-7069 None:intergenic 35.0%
GTTTCACGAATTATTGCCTA+GGG - tig0004309:7059-7078 None:intergenic 35.0%
TCAGATAATTCTAACAGGCA+AGG - tig0004309:7252-7271 None:intergenic 35.0%
CAAATGTGGGTGAAATAACA+GGG - tig0004309:7287-7306 None:intergenic 35.0%
ACAAATGTGGGTGAAATAAC+AGG - tig0004309:7288-7307 None:intergenic 35.0%
CAAACCCAAAACTGAACATT+TGG - tig0004309:7318-7337 None:intergenic 35.0%
!! GTCATATTTCTAGGCAATGT+GGG - tig0004309:7358-7377 None:intergenic 35.0%
GAGTCTATCTCATGTTATTC+TGG + tig0004309:7441-7460 Msa1340650:intron 35.0%
AAATGTGAGTGCAGTATTAG+AGG - tig0004309:7472-7491 None:intergenic 35.0%
! CATTTTCAACCCATTCAGTA+CGG - tig0004309:7782-7801 None:intergenic 35.0%
TTTCTCGAGATGTTTGAAGA+AGG + tig0004309:7822-7841 Msa1340650:CDS 35.0%
TAACTTCTGATCGACTGAAT+TGG + tig0004309:7940-7959 Msa1340650:intron 35.0%
! GTTGGTTTACTGATATACCA+GGG + tig0004309:7962-7981 Msa1340650:intron 35.0%
!! TATGGTAATGGTTCAGAATC+TGG - tig0004309:8145-8164 None:intergenic 35.0%
CACAGAGATAGTTATGGTAA+TGG - tig0004309:8157-8176 None:intergenic 35.0%
CAGTTACACAGAGATAGTTA+TGG - tig0004309:8163-8182 None:intergenic 35.0%
ACAACTCATATCACTTTGAC+AGG - tig0004309:8268-8287 None:intergenic 35.0%
ATATGAGTTGTGATCTAACG+AGG + tig0004309:8277-8296 Msa1340650:three_prime_UTR 35.0%
TATGAGTTGTGATCTAACGA+GGG + tig0004309:8278-8297 Msa1340650:three_prime_UTR 35.0%
AGGTAACGAATTCAAATTCG+AGG + tig0004309:8333-8352 Msa1340650:three_prime_UTR 35.0%
CAAATCCAAAGGTAGGAATA+TGG - tig0004309:8419-8438 None:intergenic 35.0%
CATATTCCTACCTTTGGATT+TGG + tig0004309:8417-8436 Msa1340650:three_prime_UTR 35.0%
TACAATCCAAATCCAAAGGT+AGG - tig0004309:8426-8445 None:intergenic 35.0%
AAGGTACAATCCAAATCCAA+AGG - tig0004309:8430-8449 None:intergenic 35.0%
TTTGCAATGGATCCTTGATT+TGG - tig0004309:8668-8687 None:intergenic 35.0%
CATATAAACTCCAGTATACC+AGG + tig0004309:8723-8742 Msa1340650:three_prime_UTR 35.0%
!! GAACAAGATGACTCTGAAGT+TGG + tig0004309:2399-2418 Msa1340650:CDS 40.0%
CTTTGCTTGTTCAAGAGAAC+GGG - tig0004309:2490-2509 None:intergenic 40.0%
CCAACAAGGAGATATGTGTT+TGG - tig0004309:3018-3037 None:intergenic 40.0%
CCAAACACATATCTCCTTGT+TGG + tig0004309:3015-3034 Msa1340650:CDS 40.0%
TGAGATCACACACAAGTACA+AGG + tig0004309:3050-3069 Msa1340650:CDS 40.0%
GAGATCACACACAAGTACAA+GGG + tig0004309:3051-3070 Msa1340650:CDS 40.0%
TACTGCCTGCTATCATTACT+TGG - tig0004309:3376-3395 None:intergenic 40.0%
!!! TGCGGGTTAATGGTTTTTTG+CGG + tig0004309:3401-3420 Msa1340650:intron 40.0%
ATTATTGAACCACTGTGCAG+TGG - tig0004309:3450-3469 None:intergenic 40.0%
ACTGCACAGTGGTTCAATAA+TGG + tig0004309:3449-3468 Msa1340650:intron 40.0%
CTGCACAGTGGTTCAATAAT+GGG + tig0004309:3450-3469 Msa1340650:intron 40.0%
! TCTAGCTTCAAGTTCAGATG+TGG + tig0004309:3496-3515 Msa1340650:intron 40.0%
GATTGCTTCTAGTGGTGAAT+AGG + tig0004309:3587-3606 Msa1340650:intron 40.0%
GGGAAAAGAAAATCTGGCAT+AGG - tig0004309:3694-3713 None:intergenic 40.0%
TTATAACAGGCCATGTCATC+AGG - tig0004309:3771-3790 None:intergenic 40.0%
TTTCATCCTAACCAGTAAGG+GGG + tig0004309:3800-3819 Msa1340650:intron 40.0%
! ATAAAACCCCCTTACTGGTT+AGG - tig0004309:3809-3828 None:intergenic 40.0%
GTGAGTGACGTCTATGATAA+CGG - tig0004309:3835-3854 None:intergenic 40.0%
ATAGACGTCACTCACTTTGT+TGG + tig0004309:3840-3859 Msa1340650:intron 40.0%
TAGACGTCACTCACTTTGTT+GGG + tig0004309:3841-3860 Msa1340650:intron 40.0%
CACTTTGTTGGGTAATCGAA+TGG + tig0004309:3852-3871 Msa1340650:intron 40.0%
CAGCCGTAAGCAATTAAAAG+AGG - tig0004309:4147-4166 None:intergenic 40.0%
!! CTTTTAATTGCTTACGGCTG+TGG + tig0004309:4147-4166 Msa1340650:intron 40.0%
AACTCCTGATTGATTACCCA+CGG - tig0004309:4441-4460 None:intergenic 40.0%
!! ACTGGGATTGGTTGATCTTA+CGG - tig0004309:4507-4526 None:intergenic 40.0%
! AAATATAGCTGGACTGGGAT+TGG - tig0004309:4519-4538 None:intergenic 40.0%
CAAAAAAGGGGAACCAGAAA+AGG - tig0004309:4762-4781 None:intergenic 40.0%
TCCTCAGTATATTTCTTGGC+TGG + tig0004309:5885-5904 Msa1340650:intron 40.0%
AAGGAAACAAAGAGGACTGA+AGG + tig0004309:6025-6044 Msa1340650:CDS 40.0%
CCAGATTACGCATTACATAC+TGG - tig0004309:6096-6115 None:intergenic 40.0%
CCAGTATGTAATGCGTAATC+TGG + tig0004309:6093-6112 Msa1340650:CDS 40.0%
GGATCGTGGTTATTCAAGAA+AGG + tig0004309:6114-6133 Msa1340650:CDS 40.0%
GGTTATTCAAGAAAGGAGCT+AGG + tig0004309:6121-6140 Msa1340650:CDS 40.0%
CATATGGGTAAGCAAAACAG+AGG - tig0004309:6183-6202 None:intergenic 40.0%
CATGGGACTTAAAAAGTTGC+AGG + tig0004309:6315-6334 Msa1340650:CDS 40.0%
AAGAAACAGCAAGAGACTGT+AGG + tig0004309:6346-6365 Msa1340650:CDS 40.0%
!! TATTCTAGCTCCTGTTAGCA+TGG + tig0004309:6567-6586 Msa1340650:intron 40.0%
! TGCTTGATTGGGTTTGGAAT+CGG + tig0004309:6653-6672 Msa1340650:intron 40.0%
! TTGGGTTTGGAATCGGAAAT+TGG + tig0004309:6660-6679 Msa1340650:intron 40.0%
! GTTTGGAATCGGAAATTGGT+AGG + tig0004309:6664-6683 Msa1340650:intron 40.0%
TGATCGTCTTCCTAAAATCC+TGG + tig0004309:6748-6767 Msa1340650:intron 40.0%
GATCGTCTTCCTAAAATCCT+GGG + tig0004309:6749-6768 Msa1340650:intron 40.0%
TTCCTAAAATCCTGGGTTTG+CGG + tig0004309:6756-6775 Msa1340650:intron 40.0%
GGTTTCACGAATTATTGCCT+AGG - tig0004309:7060-7079 None:intergenic 40.0%
AGGATGTCAGTATCGTGAAT+CGG - tig0004309:7195-7214 None:intergenic 40.0%
!!! TGTTCAGTTTTGGGTTTGAG+AGG + tig0004309:7320-7339 Msa1340650:intron 40.0%
!!! GTTCAGTTTTGGGTTTGAGA+GGG + tig0004309:7321-7340 Msa1340650:intron 40.0%
!! GGTCATATTTCTAGGCAATG+TGG - tig0004309:7359-7378 None:intergenic 40.0%
! TCACCTTGTGAGATAGCTTT+TGG + tig0004309:7409-7428 Msa1340650:intron 40.0%
ACTCCAAAAGCTATCTCACA+AGG - tig0004309:7415-7434 None:intergenic 40.0%
ATGTCCTGTGGTAAGCATTA+AGG + tig0004309:7505-7524 Msa1340650:intron 40.0%
ATAGACATTTGCCTACGTTC+CGG + tig0004309:7551-7570 Msa1340650:intron 40.0%
ACACTCAAGACTGTAACATC+CGG - tig0004309:7573-7592 None:intergenic 40.0%
ATGTTACAGTCTTGAGTGTG+CGG + tig0004309:7574-7593 Msa1340650:intron 40.0%
AAGCCAAACTATGTGCAGAT+AGG + tig0004309:7729-7748 Msa1340650:intron 40.0%
GTTCCTATCTGCACATAGTT+TGG - tig0004309:7735-7754 None:intergenic 40.0%
GAACAGTGAGAAGAATTGCT+GGG + tig0004309:7751-7770 Msa1340650:CDS 40.0%
! AATGCAGATCGATTAGTTGC+TGG + tig0004309:7798-7817 Msa1340650:CDS 40.0%
TGAAGAAGGATGCCACAAAA+TGG + tig0004309:7836-7855 Msa1340650:CDS 40.0%
! AGAGAGATCCAACCATTTTG+TGG - tig0004309:7851-7870 None:intergenic 40.0%
TTCTGATCGACTGAATTGGT+TGG + tig0004309:7944-7963 Msa1340650:intron 40.0%
!! GGTTGGTTTACTGATATACC+AGG + tig0004309:7961-7980 Msa1340650:intron 40.0%
CAGAATTCAAGAACAGCTGA+AGG + tig0004309:8000-8019 Msa1340650:CDS 40.0%
AAGGTAGGAATATGGTTGGA+CGG - tig0004309:8411-8430 None:intergenic 40.0%
TCCAACCATATTCCTACCTT+TGG + tig0004309:8411-8430 Msa1340650:three_prime_UTR 40.0%
TCCAAAGGTAGGAATATGGT+TGG - tig0004309:8415-8434 None:intergenic 40.0%
!! TATGACCTAGTCTTGTGCAA+TGG + tig0004309:8510-8529 Msa1340650:three_prime_UTR 40.0%
ATCTTCCATTGCACAAGACT+AGG - tig0004309:8518-8537 None:intergenic 40.0%
GAAAAACTCTCCTGGTATAC+TGG - tig0004309:8736-8755 None:intergenic 40.0%
CCATCAGCATAAACACGAAC+AGG - tig0004309:2438-2457 None:intergenic 45.0%
CCTGTTCGTGTTTATGCTGA+TGG + tig0004309:2435-2454 Msa1340650:CDS 45.0%
TCTCTTCGTCACTGCAAGTT+CGG + tig0004309:3108-3127 Msa1340650:intron 45.0%
! CTTTTCTTTCCGTGAGCTTG+TGG + tig0004309:3299-3318 Msa1340650:intron 45.0%
! TGGTTGATTCCACAAGCTCA+CGG - tig0004309:3311-3330 None:intergenic 45.0%
! ATAGCAGGCAGTAGTTTGTG+CGG + tig0004309:3383-3402 Msa1340650:intron 45.0%
! CAGTAGTTTGTGCGGGTTAA+TGG + tig0004309:3391-3410 Msa1340650:intron 45.0%
! CACAGTGGTTCAATAATGGG+TGG + tig0004309:3453-3472 Msa1340650:intron 45.0%
!! TGGTTCAATAATGGGTGGTG+CGG + tig0004309:3458-3477 Msa1340650:intron 45.0%
! GTTTTACATTTCGGCGGTGT+GGG + tig0004309:3528-3547 Msa1340650:intron 45.0%
GCTTCAACGATTGCTTCTAG+TGG + tig0004309:3579-3598 Msa1340650:intron 45.0%
CTTCTAGTGGTGAATAGGCT+AGG + tig0004309:3592-3611 Msa1340650:intron 45.0%
TAGGTGCGATGGCAATGAAA+TGG + tig0004309:3611-3630 Msa1340650:intron 45.0%
TCGAGAAGAAGCAAGCTTCA+GGG - tig0004309:3664-3683 None:intergenic 45.0%
GGAGAATAAAACCCCCTTAC+TGG - tig0004309:3814-3833 None:intergenic 45.0%
GATGAAGTGAACGGTGAGAT+TGG + tig0004309:3938-3957 Msa1340650:intron 45.0%
AGATCGTGTTTGCGGATAAC+TGG + tig0004309:4038-4057 Msa1340650:intron 45.0%
GGCGTCTTTCTGATTATGTC+TGG + tig0004309:4100-4119 Msa1340650:intron 45.0%
AGTTCAATTGCTCTTGCTGC+AGG + tig0004309:4388-4407 Msa1340650:intron 45.0%
AAGTTATTCCAGATGTGCCG+TGG + tig0004309:4421-4440 Msa1340650:CDS 45.0%
AGTTATTCCAGATGTGCCGT+GGG + tig0004309:4422-4441 Msa1340650:CDS 45.0%
CTCAGACACAACTACAGTGA+CGG + tig0004309:4626-4645 Msa1340650:intron 45.0%
TGTGCAAACTATTCATGGCG+AGG + tig0004309:5218-5237 Msa1340650:intron 45.0%
TATGCTGATACAAGTGGAGC+TGG + tig0004309:5675-5694 Msa1340650:CDS 45.0%
TGATACAAGTGGAGCTGGAA+AGG + tig0004309:5680-5699 Msa1340650:CDS 45.0%
!!! TGTTTTTTCTTCCCACCCTC+TGG + tig0004309:5767-5786 Msa1340650:intron 45.0%
GCCAGCCAAGAAATATACTG+AGG - tig0004309:5889-5908 None:intergenic 45.0%
GTAATGCGTAATCTGGATCG+TGG + tig0004309:6100-6119 Msa1340650:CDS 45.0%
GCTAGGTGTTAGCTATGTCA+AGG + tig0004309:6138-6157 Msa1340650:CDS 45.0%
GCAAGAGACTGTAGGAAAGA+AGG + tig0004309:6354-6373 Msa1340650:CDS 45.0%
AATTGCCTGGATCCGTTTCT+TGG + tig0004309:6501-6520 Msa1340650:intron 45.0%
ATTGCCTGGATCCGTTTCTT+GGG + tig0004309:6502-6521 Msa1340650:intron 45.0%
! ACCTATTCCAAGCGTTTTCG+CGG - tig0004309:6704-6723 None:intergenic 45.0%
ATAGGTGGAATCGCACGTTT+CGG + tig0004309:6718-6737 Msa1340650:intron 45.0%
TCCTAAAATCCTGGGTTTGC+GGG + tig0004309:6757-6776 Msa1340650:intron 45.0%
!! AGTTTTTCAAAGCTGGGTCG+AGG - tig0004309:6789-6808 None:intergenic 45.0%
GTACGTTTCATTCATGTGCC+AGG - tig0004309:6955-6974 None:intergenic 45.0%
AACCTTCCCAATACATCCCT+AGG + tig0004309:7040-7059 Msa1340650:intron 45.0%
TGAATCGGAGGATCGTAACA+CGG - tig0004309:7180-7199 None:intergenic 45.0%
ATGTCAGTATCGTGAATCGG+AGG - tig0004309:7192-7211 None:intergenic 45.0%
ATCCTACCACGATCTTGTCT+AGG + tig0004309:7210-7229 Msa1340650:intron 45.0%
ATCCTAGACAAGATCGTGGT+AGG - tig0004309:7215-7234 None:intergenic 45.0%
! TTCATGCTCTAGATGTCCTG+TGG + tig0004309:7493-7512 Msa1340650:intron 45.0%
CACACCTTAATGCTTACCAC+AGG - tig0004309:7512-7531 None:intergenic 45.0%
CGGCAGACCAATGAATTACT+AGG + tig0004309:7594-7613 Msa1340650:intron 45.0%
GGAACAGTGAGAAGAATTGC+TGG + tig0004309:7750-7769 Msa1340650:CDS 45.0%
TGGGATGAACCGTACTGAAT+GGG + tig0004309:7770-7789 Msa1340650:CDS 45.0%
GAAGGATGCCACAAAATGGT+TGG + tig0004309:7840-7859 Msa1340650:intron 45.0%
!! GAGAATCTTGGGTTGGAACT+TGG - tig0004309:8374-8393 None:intergenic 45.0%
TGTTGGAGAGAATCTTGGGT+TGG - tig0004309:8381-8400 None:intergenic 45.0%
GCACTGTTGGAGAGAATCTT+GGG - tig0004309:8385-8404 None:intergenic 45.0%
TGCACTGTTGGAGAGAATCT+TGG - tig0004309:8386-8405 None:intergenic 45.0%
ATTGACTGTGCAGGTTGTAG+AGG + tig0004309:8475-8494 Msa1340650:three_prime_UTR 45.0%
!!! AATATAATAGTATTTTAATT+TGG + tig0004309:4702-4721 Msa1340650:intron 5.0%
!! CTATTAATAAAAAATATTAT+TGG - tig0004309:6433-6452 None:intergenic 5.0%
CTTGTTCAAGAGAACGGGCA+TGG - tig0004309:2485-2504 None:intergenic 50.0%
CATCACTGCAGCATCCAACA+AGG - tig0004309:3032-3051 None:intergenic 50.0%
CGGGTCCAAGTAATGATAGC+AGG + tig0004309:3368-3387 Msa1340650:intron 50.0%
! TAGCAGGCAGTAGTTTGTGC+GGG + tig0004309:3384-3403 Msa1340650:intron 50.0%
! GACAGTTTTCCACTGCACAG+TGG + tig0004309:3438-3457 Msa1340650:intron 50.0%
!! TTCAATAATGGGTGGTGCGG+TGG + tig0004309:3461-3480 Msa1340650:intron 50.0%
! GGTTTTACATTTCGGCGGTG+TGG + tig0004309:3527-3546 Msa1340650:intron 50.0%
CTCGAGAAGAAGCAAGCTTC+AGG - tig0004309:3665-3684 None:intergenic 50.0%
TCGTGTTTGCGGATAACTGG+CGG + tig0004309:4041-4060 Msa1340650:intron 50.0%
ATTGCTTACGGCTGTGGAGT+AGG + tig0004309:4153-4172 Msa1340650:intron 50.0%
TCAATTGCTCTTGCTGCAGG+TGG + tig0004309:4391-4410 Msa1340650:intron 50.0%
CAATTGCTCTTGCTGCAGGT+GGG + tig0004309:4392-4411 Msa1340650:intron 50.0%
TTGATTACCCACGGCACATC+TGG - tig0004309:4432-4451 None:intergenic 50.0%
TGTGCCGTGGGTAATCAATC+AGG + tig0004309:4434-4453 Msa1340650:CDS 50.0%
CGTCACTGTAGTTGTGTCTG+AGG - tig0004309:4628-4647 None:intergenic 50.0%
GGATAACGCCTCCTTTACTG+AGG - tig0004309:5256-5275 None:intergenic 50.0%
GATGAATGACACCAGAGGGT+GGG - tig0004309:5781-5800 None:intergenic 50.0%
AGATGAATGACACCAGAGGG+TGG - tig0004309:5782-5801 None:intergenic 50.0%
GGTAAGCAAAACAGAGGAGC+TGG - tig0004309:6177-6196 None:intergenic 50.0%
TTGCCTGGATCCGTTTCTTG+GGG + tig0004309:6503-6522 Msa1340650:intron 50.0%
TACCCTGTGCGTGCTTGATT+GGG + tig0004309:6642-6661 Msa1340650:intron 50.0%
AACCCAATCAAGCACGCACA+GGG - tig0004309:6647-6666 None:intergenic 50.0%
AAACCCAATCAAGCACGCAC+AGG - tig0004309:6648-6667 None:intergenic 50.0%
TGTGCGTGCTTGATTGGGTT+TGG + tig0004309:6647-6666 Msa1340650:intron 50.0%
GCGAAAACGCTTGGAATAGG+TGG + tig0004309:6703-6722 Msa1340650:intron 50.0%
! ACCCGCAAACCCAGGATTTT+AGG - tig0004309:6761-6780 None:intergenic 50.0%
AAAATCCTGGGTTTGCGGGT+CGG + tig0004309:6761-6780 Msa1340650:intron 50.0%
TGCCTAGGGATGTATTGGGA+AGG - tig0004309:7045-7064 None:intergenic 50.0%
CGAGATCCTAGACAAGATCG+TGG - tig0004309:7219-7238 None:intergenic 50.0%
GACTGTAACATCCGGAACGT+AGG - tig0004309:7565-7584 None:intergenic 50.0%
CTGGGATGAACCGTACTGAA+TGG + tig0004309:7769-7788 Msa1340650:CDS 50.0%
! TGTCTCTGATTGCTGTTCCC+TGG - tig0004309:7982-8001 None:intergenic 50.0%
! ACGAGGGTACAACCGTACAA+CGG + tig0004309:8294-8313 Msa1340650:three_prime_UTR 50.0%
ACAACCGTACAACGGTTGCA+TGG + tig0004309:8302-8321 Msa1340650:three_prime_UTR 50.0%
TGCACCATGCAACCGTTGTA+CGG - tig0004309:8309-8328 None:intergenic 50.0%
!! TTTGGCTGCATTGACTGTGC+AGG + tig0004309:8466-8485 Msa1340650:three_prime_UTR 50.0%
GGTGAATAGGCTAGGTGCGA+TGG + tig0004309:3600-3619 Msa1340650:intron 55.0%
CAGGGCTCTCGAAGACAACA+AGG - tig0004309:3646-3665 None:intergenic 55.0%
AAGCCCCAAGAAACGGATCC+AGG - tig0004309:6509-6528 None:intergenic 55.0%
GTACCCTGTGCGTGCTTGAT+TGG + tig0004309:6641-6660 Msa1340650:intron 55.0%
! AAGCGTTTTCGCGGCGATTC+CGG - tig0004309:6695-6714 None:intergenic 55.0%
GCCGCGAAAACGCTTGGAAT+AGG + tig0004309:6700-6719 Msa1340650:intron 55.0%
CGGAGGATCGTAACACGGAT+CGG - tig0004309:7175-7194 None:intergenic 55.0%
ACGGTTGCATGGTGCAACAG+AGG + tig0004309:8313-8332 Msa1340650:three_prime_UTR 55.0%
TATGTGTGCGTGCGCGTGTG+CGG - tig0004309:4852-4871 None:intergenic 60.0%
CGGAAATTGGTAGGCGCAGC+CGG + tig0004309:6673-6692 Msa1340650:intron 60.0%
GGAATCGCCGCGAAAACGCT+TGG + tig0004309:6694-6713 Msa1340650:intron 60.0%
GGTGGAATCGCACGTTTCGG+CGG + tig0004309:6721-6740 Msa1340650:intron 60.0%
!! GGTTGGACGGACTGCACTGT+TGG - tig0004309:8398-8417 None:intergenic 60.0%
TGGGTGGTGCGGTGGATCTG+TGG + tig0004309:3469-3488 Msa1340650:intron 65.0%
AGGATCCGACCCGCAAACCC+AGG - tig0004309:6769-6788 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0004309 gene 2250 8755 2250 ID=Msa1340650;Name=Msa1340650
tig0004309 mRNA 2250 8755 2250 ID=Msa1340650-mRNA-1;Parent=Msa1340650;Name=Msa1340650-mRNA-1;_AED=0.09;_eAED=0.09;_QI=143|1|1|1|1|1|8|638|285
tig0004309 exon 2250 2514 2250 ID=Msa1340650-mRNA-1:exon:2784;Parent=Msa1340650-mRNA-1
tig0004309 exon 3011 3124 3011 ID=Msa1340650-mRNA-1:exon:2785;Parent=Msa1340650-mRNA-1
tig0004309 exon 4410 4505 4410 ID=Msa1340650-mRNA-1:exon:2786;Parent=Msa1340650-mRNA-1
tig0004309 exon 5674 5716 5674 ID=Msa1340650-mRNA-1:exon:2787;Parent=Msa1340650-mRNA-1
tig0004309 exon 6004 6159 6004 ID=Msa1340650-mRNA-1:exon:2788;Parent=Msa1340650-mRNA-1
tig0004309 exon 6295 6375 6295 ID=Msa1340650-mRNA-1:exon:2789;Parent=Msa1340650-mRNA-1
tig0004309 exon 7747 7857 7747 ID=Msa1340650-mRNA-1:exon:2790;Parent=Msa1340650-mRNA-1
tig0004309 exon 7983 8755 7983 ID=Msa1340650-mRNA-1:exon:2791;Parent=Msa1340650-mRNA-1
tig0004309 five_prime_UTR 2250 2392 2250 ID=Msa1340650-mRNA-1:five_prime_utr;Parent=Msa1340650-mRNA-1
tig0004309 CDS 2393 2514 2393 ID=Msa1340650-mRNA-1:cds;Parent=Msa1340650-mRNA-1
tig0004309 CDS 3011 3124 3011 ID=Msa1340650-mRNA-1:cds;Parent=Msa1340650-mRNA-1
tig0004309 CDS 4410 4505 4410 ID=Msa1340650-mRNA-1:cds;Parent=Msa1340650-mRNA-1
tig0004309 CDS 5674 5716 5674 ID=Msa1340650-mRNA-1:cds;Parent=Msa1340650-mRNA-1
tig0004309 CDS 6004 6159 6004 ID=Msa1340650-mRNA-1:cds;Parent=Msa1340650-mRNA-1
tig0004309 CDS 6295 6375 6295 ID=Msa1340650-mRNA-1:cds;Parent=Msa1340650-mRNA-1
tig0004309 CDS 7747 7857 7747 ID=Msa1340650-mRNA-1:cds;Parent=Msa1340650-mRNA-1
tig0004309 CDS 7983 8117 7983 ID=Msa1340650-mRNA-1:cds;Parent=Msa1340650-mRNA-1
tig0004309 three_prime_UTR 8118 8755 8118 ID=Msa1340650-mRNA-1:three_prime_utr;Parent=Msa1340650-mRNA-1
Gene Sequence

>Msa1340650

ATGAATGAACAAGATGACTCTGAAGTTGGCAAAAACGATAAACCTGTTCGTGTTTATGCTGATGGAATTTACGATCTCTTTCACTTTGGCCATGCCCGTTCTCTTGAACAAGCAAAGAAATCGTTTCCAAACACATATCTCCTTGTTGGATGCTGCAGTGATGAGATCACACACAAGTACAAGGGTAAAACAGTTATGAATGAGCAAGAACGCTATGAGTCTCTTCGTCACTGCAAGTGGGTTGATGAAGTTATTCCAGATGTGCCGTGGGTAATCAATCAGGAGTTCATTGACAAGCATAAAATTGACTATGTGGCACATGACGCTCTTCCTTATGCTGATACAAGTGGAGCTGGAAAGGATGTCTATGAATTTGTTAAGGCTATTGGAAAATTTAAGGAAACAAAGAGGACTGAAGGAATTTCTACCTCTGATATCATAATGAGAATCATCAAGGATTACAACCAGTATGTAATGCGTAATCTGGATCGTGGTTATTCAAGAAAGGAGCTAGGTGTTAGCTATGTCAAGGAGAAAAGATTGAGAATGAACATGGGACTTAAAAAGTTGCAGGAGAGAGTCAAGAAACAGCAAGAGACTGTAGGAAAGAAGATAGGAACAGTGAGAAGAATTGCTGGGATGAACCGTACTGAATGGGTTGAAAATGCAGATCGATTAGTTGCTGGATTTCTCGAGATGTTTGAAGAAGGATGCCACAAAATGGGAACAGCAATCAGAGACAGAATTCAAGAACAGCTGAAGGCACAACAGCTAAAATCTCTTCTTTATGATGAGTGGGATGATGACGTTGACGACGAATTCTATGAAGATGAATCTGTAGAATACTACAGCGACTAA

Protein sequence

>Msa1340650

MNEQDDSEVGKNDKPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCSDEITHKYKGKTVMNEQERYESLRHCKWVDEVIPDVPWVINQEFIDKHKIDYVAHDALPYADTSGAGKDVYEFVKAIGKFKETKRTEGISTSDIIMRIIKDYNQYVMRNLDRGYSRKELGVSYVKEKRLRMNMGLKKLQERVKKQQETVGKKIGTVRRIAGMNRTEWVENADRLVAGFLEMFEEGCHKMGTAIRDRIQEQLKAQQLKSLLYDEWDDDVDDEFYEDESVEYYSD*