AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0282250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0282250 MtrunA17_Chr2g0297021 99.649 285 1 0 1 285 1 285 0.0 590
Msa0282250 MtrunA17_Chr3g0120311 83.673 245 36 1 13 257 15 255 3.01e-156 437
Msa0282250 MtrunA17_Chr4g0032051 87.429 175 19 2 111 284 20 192 1.52e-96 282
Msa0282250 MtrunA17_Chr4g0032041 98.630 73 1 0 66 138 1 73 4.75e-47 156
Msa0282250 MtrunA17_Chr4g0032031 83.051 59 9 1 1 59 1 58 2.92e-29 105
Msa0282250 MtrunA17_Chr7g0245591 31.429 245 148 7 11 248 50 281 2.93e-28 112
Msa0282250 MtrunA17_Chr7g0245591 36.957 92 54 2 18 107 258 347 4.76e-12 65.9
Msa0282250 MtrunA17_Chr8g0389111 42.553 141 73 3 16 152 65 201 3.00e-26 106
Msa0282250 MtrunA17_Chr8g0389111 35.484 155 93 4 18 169 256 406 4.75e-19 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0282250 AT2G32260.1 78.652 267 52 2 12 277 31 293 2.89e-156 439
Msa0282250 AT2G32260.2 77.637 237 48 2 42 277 12 244 9.09e-135 382
Msa0282250 AT2G38670.1 31.304 230 139 6 14 237 53 269 3.31e-28 112
Msa0282250 AT2G38670.1 32.692 156 100 3 18 170 257 410 2.64e-17 81.6

Find 85 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGCTATTGGAAAATTTA+AGG 0.163999 2_3:-18091063 Msa0282250:CDS
TTGATCTAAAAGCTGAAATT+TGG 0.212003 2_3:-18089299 Msa0282250:three_prime_UTR
CATATTCCTACCTTTGGATT+TGG 0.220095 2_3:-18089330 Msa0282250:three_prime_UTR
CTTATACAGGTTAAGGCTAT+TGG 0.232230 2_3:-18091074 Msa0282250:intron
TCCAACCATATTCCTACCTT+TGG 0.332225 2_3:-18089336 Msa0282250:three_prime_UTR
TTTGCAATGGATCCTTGATT+TGG 0.341191 2_3:+18089082 None:intergenic
TATGGTAATGGTTCAGAATC+TGG 0.342345 2_3:+18089605 None:intergenic
CCAAACACATATCTCCTTGT+TGG 0.358023 2_3:-18094057 Msa0282250:CDS
CAAATCCAAAGGTAGGAATA+TGG 0.372660 2_3:+18089331 None:intergenic
TTGATTACCCACGGCACATC+TGG 0.373662 2_3:+18092643 None:intergenic
CCAGTATGTAATGCGTAATC+TGG 0.373754 2_3:-18090976 Msa0282250:CDS
TGCACTGTTGGAGAGAATCT+TGG 0.376766 2_3:+18089364 None:intergenic
CTTTGCTTGTTCAAGAGAAC+GGG 0.376996 2_3:+18094587 None:intergenic
TTCGTATATGCAATGCAATA+TGG 0.379980 2_3:-18089547 Msa0282250:three_prime_UTR
GAGAATCTTGGGTTGGAACT+TGG 0.399226 2_3:+18089376 None:intergenic
TAACTGTAAAATATTAGATA+TGG 0.411830 2_3:-18089570 Msa0282250:three_prime_UTR
ATATGCAATGCAATATGGTT+TGG 0.412593 2_3:-18089542 Msa0282250:three_prime_UTR
ATTGCAAAACTAAAGAATAT+AGG 0.414215 2_3:-18089067 Msa0282250:three_prime_UTR
CCAGATTACGCATTACATAC+TGG 0.416241 2_3:+18090976 None:intergenic
CCATCAGCATAAACACGAAC+AGG 0.422644 2_3:+18094639 None:intergenic
AATGTGAAAATATGTTTGAT+TGG 0.429677 2_3:-18089198 Msa0282250:three_prime_UTR
TGAAGAAGGATGCCACAAAA+TGG 0.436374 2_3:-18089910 Msa0282250:intron
GGAACAGTGAGAAGAATTGC+TGG 0.441857 2_3:-18089996 Msa0282250:CDS
ATTTACGATCTCTTTCACTT+TGG 0.443426 2_3:-18094615 Msa0282250:CDS
AATGCAGATCGATTAGTTGC+TGG 0.449023 2_3:-18089948 Msa0282250:CDS
GCACTGTTGGAGAGAATCTT+GGG 0.457592 2_3:+18089365 None:intergenic
CACAGAGATAGTTATGGTAA+TGG 0.463979 2_3:+18089593 None:intergenic
CAGTTACACAGAGATAGTTA+TGG 0.466530 2_3:+18089587 None:intergenic
CCAACAAGGAGATATGTGTT+TGG 0.467300 2_3:+18094057 None:intergenic
CCTGTTCGTGTTTATGCTGA+TGG 0.469877 2_3:-18094639 Msa0282250:CDS
ATCTCTTCTTTATGATGAGT+GGG 0.482968 2_3:-18089711 Msa0282250:CDS
TGTGCCGTGGGTAATCAATC+AGG 0.490691 2_3:-18092638 Msa0282250:CDS
GAACAAGATGACTCTGAAGT+TGG 0.491101 2_3:-18094675 Msa0282250:CDS
TTCAATGTTCAGAGTCAAAA+CGG 0.491199 2_3:+18094726 None:intergenic
GCAAGAGACTGTAGGAAAGA+AGG 0.492142 2_3:-18090715 Msa0282250:intron
AATTCAAATTCGAGGAGATA+TGG 0.492609 2_3:-18089406 Msa0282250:three_prime_UTR
ACAACTCATATCACTTTGAC+AGG 0.496623 2_3:+18089482 None:intergenic
TTTCTCGAGATGTTTGAAGA+AGG 0.505057 2_3:-18089924 Msa0282250:CDS
AATCTCTTCTTTATGATGAG+TGG 0.507907 2_3:-18089712 Msa0282250:CDS
TATGCTGATACAAGTGGAGC+TGG 0.511409 2_3:-18091394 Msa0282250:CDS
CTTGTTCAAGAGAACGGGCA+TGG 0.517970 2_3:+18094592 None:intergenic
TGAAGAAATTGACCAAATCA+AGG 0.523865 2_3:-18089094 Msa0282250:three_prime_UTR
TCTTTGCTTGTTCAAGAGAA+CGG 0.524315 2_3:+18094586 None:intergenic
TGCACCATGCAACCGTTGTA+CGG 0.527175 2_3:+18089441 None:intergenic
CATATAAACTCCAGTATACC+AGG 0.536734 2_3:-18089024 Msa0282250:three_prime_UTR
TCCAAAGGTAGGAATATGGT+TGG 0.540697 2_3:+18089335 None:intergenic
CATAGTTATGCTGATACAAG+TGG 0.557570 2_3:-18091400 Msa0282250:intron
TGAGATCACACACAAGTACA+AGG 0.560848 2_3:-18094022 Msa0282250:CDS
TTTGGCTGCATTGACTGTGC+AGG 0.561734 2_3:-18089281 Msa0282250:three_prime_UTR
GAAAAGATTGAGAATGAACA+TGG 0.563205 2_3:-18090772 Msa0282250:CDS
GGATCGTGGTTATTCAAGAA+AGG 0.563355 2_3:-18090955 Msa0282250:CDS
GGTTGGACGGACTGCACTGT+TGG 0.568445 2_3:+18089352 None:intergenic
AAGGAAACAAAGAGGACTGA+AGG 0.570979 2_3:-18091044 Msa0282250:CDS
TGTTGGAGAGAATCTTGGGT+TGG 0.573339 2_3:+18089369 None:intergenic
CTGGGATGAACCGTACTGAA+TGG 0.573855 2_3:-18089977 Msa0282250:CDS
AGGTAACGAATTCAAATTCG+AGG 0.574904 2_3:-18089414 Msa0282250:three_prime_UTR
ATCTTCCATTGCACAAGACT+AGG 0.580708 2_3:+18089232 None:intergenic
TGGGATGAACCGTACTGAAT+GGG 0.582067 2_3:-18089976 Msa0282250:CDS
TATCATAATGAGAATCATCA+AGG 0.585536 2_3:-18091006 Msa0282250:CDS
AAGTTATTCCAGATGTGCCG+TGG 0.587410 2_3:-18092651 Msa0282250:CDS
ACAACCGTACAACGGTTGCA+TGG 0.589259 2_3:-18089445 Msa0282250:three_prime_UTR
AACTCCTGATTGATTACCCA+CGG 0.589451 2_3:+18092634 None:intergenic
AAGAAACAGCAAGAGACTGT+AGG 0.592810 2_3:-18090723 Msa0282250:CDS
TGATACAAGTGGAGCTGGAA+AGG 0.599993 2_3:-18091389 Msa0282250:CDS
ATTGACTGTGCAGGTTGTAG+AGG 0.601482 2_3:-18089272 Msa0282250:three_prime_UTR
GCTAGGTGTTAGCTATGTCA+AGG 0.608221 2_3:-18090931 Msa0282250:intron
TACAATCCAAATCCAAAGGT+AGG 0.608904 2_3:+18089324 None:intergenic
TATGACCTAGTCTTGTGCAA+TGG 0.611097 2_3:-18089237 Msa0282250:three_prime_UTR
CAAGCATAAAATTGACTATG+TGG 0.611838 2_3:-18092605 Msa0282250:CDS
GAAAATTTAAGGAAACAAAG+AGG 0.614590 2_3:-18091052 Msa0282250:CDS
CAGAATTCAAGAACAGCTGA+AGG 0.615936 2_3:-18089747 Msa0282250:CDS
GAACAGTGAGAAGAATTGCT+GGG 0.618852 2_3:-18089995 Msa0282250:CDS
CATCACTGCAGCATCCAACA+AGG 0.622451 2_3:+18094043 None:intergenic
GGTTATTCAAGAAAGGAGCT+AGG 0.624474 2_3:-18090948 Msa0282250:CDS
AAGGTACAATCCAAATCCAA+AGG 0.626057 2_3:+18089320 None:intergenic
AAGGTAGGAATATGGTTGGA+CGG 0.628552 2_3:+18089339 None:intergenic
AAAAGATTGAGAATGAACAT+GGG 0.642829 2_3:-18090771 Msa0282250:CDS
ATATGAGTTGTGATCTAACG+AGG 0.653946 2_3:-18089470 Msa0282250:three_prime_UTR
GATTCTCATTATGATATCAG+AGG 0.655348 2_3:+18091013 None:intergenic
AGTTATTCCAGATGTGCCGT+GGG 0.663969 2_3:-18092650 Msa0282250:CDS
ACGGTTGCATGGTGCAACAG+AGG 0.674103 2_3:-18089434 Msa0282250:three_prime_UTR
GTAATGCGTAATCTGGATCG+TGG 0.679784 2_3:-18090969 Msa0282250:CDS
ACGAGGGTACAACCGTACAA+CGG 0.680986 2_3:-18089453 Msa0282250:three_prime_UTR
GAGATCACACACAAGTACAA+GGG 0.705592 2_3:-18094021 Msa0282250:CDS
TATGAGTTGTGATCTAACGA+GGG 0.748059 2_3:-18089469 Msa0282250:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTGTTGTTTTTA+AGG - chr2_3:18089532-18089551 Msa0282250:three_prime_UTR 10.0%
!! ATAAATAAACATAAAAAAGA+GGG + chr2_3:18090480-18090499 None:intergenic 10.0%
!! AATAAATAAACATAAAAAAG+AGG + chr2_3:18090481-18090500 None:intergenic 10.0%
!! TTTATATGACTTATTTAAAT+TGG - chr2_3:18091053-18091072 Msa0282250:CDS 10.0%
!! TATATATTTACAAAATACAA+TGG + chr2_3:18093246-18093265 None:intergenic 10.0%
!!! GTTTTTTGTTTTTGTTTTTA+AGG - chr2_3:18089474-18089493 Msa0282250:three_prime_UTR 15.0%
!!! TTTTTTTTGTTGTGTTTTTA+AGG - chr2_3:18089502-18089521 Msa0282250:three_prime_UTR 15.0%
!!! TTGTTTTTAAGGTTTTTTTT+TGG - chr2_3:18089543-18089562 Msa0282250:three_prime_UTR 15.0%
!!! TGTTTTTAAGGTTTTTTTTT+GGG - chr2_3:18089544-18089563 Msa0282250:three_prime_UTR 15.0%
!! ATAATTTAACCAAAGAAAAA+AGG + chr2_3:18089913-18089932 None:intergenic 15.0%
!! TTTATTAATTATACAACAGT+TGG + chr2_3:18090097-18090116 None:intergenic 15.0%
!!! TATTTCATCTAGTTATATTT+TGG - chr2_3:18090952-18090971 Msa0282250:CDS 15.0%
!!! AACAAAAGAAAACAAATTTT+TGG + chr2_3:18090995-18091014 None:intergenic 15.0%
!! ATTTAATTCCAGTAAAAAAA+AGG + chr2_3:18091672-18091691 None:intergenic 15.0%
!!! CTTTTTCTTAAATTTACATA+AGG + chr2_3:18091961-18091980 None:intergenic 15.0%
!! TCATATACAACTAAATTAAA+AGG + chr2_3:18092511-18092530 None:intergenic 15.0%
!! AAAGTTTAAACAAATAAGAA+AGG + chr2_3:18092626-18092645 None:intergenic 15.0%
!! TAACTGTAAAATATTAGATA+TGG - chr2_3:18094268-18094287 Msa0282250:intron 15.0%
!! AAAAAAACAAGAAACAAAAG+AGG - chr2_3:18089062-18089081 Msa0282250:three_prime_UTR 20.0%
!! AAAATGAAATTGAGAAAGAT+GGG + chr2_3:18089349-18089368 None:intergenic 20.0%
!! AAAAATGAAATTGAGAAAGA+TGG + chr2_3:18089350-18089369 None:intergenic 20.0%
!! GGACTAAATATCATAAAAAA+GGG + chr2_3:18089386-18089405 None:intergenic 20.0%
!! TGGACTAAATATCATAAAAA+AGG + chr2_3:18089387-18089406 None:intergenic 20.0%
!! TAAAAATCCTAATTGCAAAT+GGG + chr2_3:18089626-18089645 None:intergenic 20.0%
!! ATAAAAATCCTAATTGCAAA+TGG + chr2_3:18089627-18089646 None:intergenic 20.0%
!!! ATTTGCAATTAGGATTTTTA+TGG - chr2_3:18089626-18089645 Msa0282250:three_prime_UTR 20.0%
!!! AATTAGGATTTTTATGGTTT+TGG - chr2_3:18089632-18089651 Msa0282250:three_prime_UTR 20.0%
!!! TTTTGTTGTTTGTTAATTGA+AGG - chr2_3:18089755-18089774 Msa0282250:CDS 20.0%
!!! TTTCTTTTTCCTTTTTTCTT+TGG - chr2_3:18089901-18089920 Msa0282250:intron 20.0%
!!! CTATTATAGGTTTTACATTT+CGG - chr2_3:18090285-18090304 Msa0282250:intron 20.0%
!!! GAAATTTTTCATGTTATAAC+AGG + chr2_3:18090550-18090569 None:intergenic 20.0%
!! TAAGTAAATAGAAAATGAGA+AGG + chr2_3:18091108-18091127 None:intergenic 20.0%
!! AATAAAAAGAGAAATATAGC+TGG + chr2_3:18091296-18091315 None:intergenic 20.0%
!!! GAAACAAGAAAACTTTTAAA+AGG - chr2_3:18091445-18091464 Msa0282250:intron 20.0%
!! ATTAAATAGGAGACAAAAAA+GGG + chr2_3:18091541-18091560 None:intergenic 20.0%
!! AAGATCATAACAGATTAAAT+AGG + chr2_3:18091554-18091573 None:intergenic 20.0%
!!! AATTACTTCCTTTTTTTTAC+TGG - chr2_3:18091661-18091680 Msa0282250:intron 20.0%
!! AAATATATAGTCAATCATGT+AGG + chr2_3:18091853-18091872 None:intergenic 20.0%
!!! ATATTTTTAAGTGAATAGTG+TGG - chr2_3:18091867-18091886 Msa0282250:intron 20.0%
!! ACTTTGTTGAAAATGTTATT+TGG - chr2_3:18091919-18091938 Msa0282250:intron 20.0%
!! TAATATAGTAGTAGTGATAA+TGG + chr2_3:18092263-18092282 None:intergenic 20.0%
!!! ATCCACAAAGTTTTTATATA+TGG - chr2_3:18092379-18092398 Msa0282250:intron 20.0%
!! AACCTGTATAAGAAATTAAT+AGG + chr2_3:18092756-18092775 None:intergenic 20.0%
!! TTAATTTCTTATACAGGTTA+AGG - chr2_3:18092757-18092776 Msa0282250:intron 20.0%
!! AAATATATAGTTTAATTGCC+TGG - chr2_3:18093257-18093276 Msa0282250:intron 20.0%
!!! TTTATTCCTATTACTAGTTT+GGG - chr2_3:18093299-18093318 Msa0282250:intron 20.0%
!!! CATCTTAAAGCTTATTTTTA+GGG + chr2_3:18093971-18093990 None:intergenic 20.0%
!!! TCATCTTAAAGCTTATTTTT+AGG + chr2_3:18093972-18093991 None:intergenic 20.0%
!! AATGTGAAAATATGTTTGAT+TGG - chr2_3:18094640-18094659 Msa0282250:CDS 20.0%
!!! TATATTCTTTAGTTTTGCAA+TGG + chr2_3:18094772-18094791 None:intergenic 20.0%
!! ATTGCAAAACTAAAGAATAT+AGG - chr2_3:18094771-18094790 Msa0282250:five_prime_UTR 20.0%
! TGAAATGAAGCAAAAGAAAA+AGG + chr2_3:18089302-18089321 None:intergenic 25.0%
! AACCCAAAAGAACAAAAAAT+GGG + chr2_3:18089412-18089431 None:intergenic 25.0%
! AAACCCAAAAGAACAAAAAA+TGG + chr2_3:18089413-18089432 None:intergenic 25.0%
! AAAAAATTGAAGAGTTTGTG+CGG - chr2_3:18090114-18090133 Msa0282250:intron 25.0%
! TAATAGATTGATGAAGTGAA+CGG - chr2_3:18090695-18090714 Msa0282250:intron 25.0%
! AAAAGTAAACACGAGATTAT+AGG - chr2_3:18090733-18090752 Msa0282250:CDS 25.0%
! ATTATGTCTGGTCAAAATAT+TGG - chr2_3:18090878-18090897 Msa0282250:intron 25.0%
!!! TATCCTCTTTTAATTGCTTA+CGG - chr2_3:18090907-18090926 Msa0282250:intron 25.0%
!!! TTCATCTAGTTATATTTTGG+AGG - chr2_3:18090955-18090974 Msa0282250:CDS 25.0%
!!! TCATCTAGTTATATTTTGGA+GGG - chr2_3:18090956-18090975 Msa0282250:CDS 25.0%
! TTACTTATTTGCTTTCACTA+TGG - chr2_3:18091121-18091140 Msa0282250:intron 25.0%
! TTATCAGCATTCTAAATTTG+TGG - chr2_3:18091316-18091335 Msa0282250:intron 25.0%
! TTAAATAGGAGACAAAAAAG+GGG + chr2_3:18091540-18091559 None:intergenic 25.0%
! GATTAAATAGGAGACAAAAA+AGG + chr2_3:18091542-18091561 None:intergenic 25.0%
!!! ATGATCTTTGTTTTCTGTTT+TGG - chr2_3:18091566-18091585 Msa0282250:intron 25.0%
! AAAAATATCATGTGAGAAGA+GGG + chr2_3:18091808-18091827 None:intergenic 25.0%
! AAAAAATATCATGTGAGAAG+AGG + chr2_3:18091809-18091828 None:intergenic 25.0%
!!! TCTTCTCACATGATATTTTT+TGG - chr2_3:18091808-18091827 Msa0282250:intron 25.0%
!!! CTTCTCACATGATATTTTTT+GGG - chr2_3:18091809-18091828 Msa0282250:intron 25.0%
! GACCATATATAAAAACTTTG+TGG + chr2_3:18092384-18092403 None:intergenic 25.0%
! CTATGGTAACAAAATAACAA+AGG + chr2_3:18092423-18092442 None:intergenic 25.0%
!!! TTATGATTTCTTTTGACTAC+TGG - chr2_3:18092597-18092616 Msa0282250:CDS 25.0%
! TGCCTATTAATTTCTTATAC+AGG - chr2_3:18092751-18092770 Msa0282250:intron 25.0%
! TAAGGCTATTGGAAAATTTA+AGG - chr2_3:18092775-18092794 Msa0282250:intron 25.0%
! GAAAATTTAAGGAAACAAAG+AGG - chr2_3:18092786-18092805 Msa0282250:intron 25.0%
! TATCATAATGAGAATCATCA+AGG - chr2_3:18092832-18092851 Msa0282250:intron 25.0%
!! ATACATGATCTCTTATTTGT+AGG - chr2_3:18093042-18093061 Msa0282250:intron 25.0%
! AAAAGATTGAGAATGAACAT+GGG - chr2_3:18093067-18093086 Msa0282250:intron 25.0%
! GATCTATAATAAGATAGTTC+AGG + chr2_3:18093162-18093181 None:intergenic 25.0%
! TATCTTATTATAGATCGACA+AGG - chr2_3:18093166-18093185 Msa0282250:intron 25.0%
! CTTTATTCCTATTACTAGTT+TGG - chr2_3:18093298-18093317 Msa0282250:intron 25.0%
! ATGACCTAAAGAGAATTTAT+AGG - chr2_3:18093465-18093484 Msa0282250:intron 25.0%
! TAAAGAGAATTTATAGGACA+CGG - chr2_3:18093471-18093490 Msa0282250:intron 25.0%
! CAAATGTCTATCAAAAAACA+TGG + chr2_3:18093634-18093653 None:intergenic 25.0%
! ATCATTTCCTAGTAATTCAT+TGG + chr2_3:18093696-18093715 None:intergenic 25.0%
! AATGAATTACTAGGAAATGA+TGG - chr2_3:18093695-18093714 Msa0282250:intron 25.0%
! ATAGTGTCTTAATAATGCAA+AGG + chr2_3:18093793-18093812 None:intergenic 25.0%
!! AAATTTCAGCTTTTAGATCA+AGG + chr2_3:18094540-18094559 None:intergenic 25.0%
! TTGATCTAAAAGCTGAAATT+TGG - chr2_3:18094539-18094558 Msa0282250:intron 25.0%
! TGCAAAAAAGACTTAACATT+TGG + chr2_3:18094706-18094725 None:intergenic 25.0%
AATGAGAGAGTAAAAAAGAG+AGG - chr2_3:18089036-18089055 Msa0282250:three_prime_UTR 30.0%
TTCAATGTTCAGAGTCAAAA+CGG + chr2_3:18089115-18089134 None:intergenic 30.0%
ATTTACGATCTCTTTCACTT+TGG - chr2_3:18089223-18089242 Msa0282250:three_prime_UTR 30.0%
ATGAAGCAAAAGAAAAAGGA+GGG + chr2_3:18089298-18089317 None:intergenic 30.0%
AATGAAGCAAAAGAAAAAGG+AGG + chr2_3:18089299-18089318 None:intergenic 30.0%
AAAAGAACAAAAAATGGGGT+TGG + chr2_3:18089407-18089426 None:intergenic 30.0%
!!! AACCCCATTTTTTGTTCTTT+TGG - chr2_3:18089406-18089425 Msa0282250:three_prime_UTR 30.0%
!!! ACCCCATTTTTTGTTCTTTT+GGG - chr2_3:18089407-18089426 Msa0282250:three_prime_UTR 30.0%
ACCCAAAAGAACAAAAAATG+GGG + chr2_3:18089411-18089430 None:intergenic 30.0%
!!! TTTTGTTCTTTTGGGTTTGT+TGG - chr2_3:18089415-18089434 Msa0282250:three_prime_UTR 30.0%
!!! TTGGGTGTTGTTTATGATTT+TGG - chr2_3:18089562-18089581 Msa0282250:three_prime_UTR 30.0%
TTGATTTCCCATTTGCAATT+AGG - chr2_3:18089616-18089635 Msa0282250:three_prime_UTR 30.0%
!! TGATGAAAGTGTCTATGATT+TGG - chr2_3:18089657-18089676 Msa0282250:CDS 30.0%
!!! GATTTGGTTTTTGTTCTTGT+TGG - chr2_3:18089673-18089692 Msa0282250:CDS 30.0%
TGTAGAATAGTAGATGTATC+AGG - chr2_3:18089995-18090014 Msa0282250:CDS 30.0%
AAAAATTGAAGAGTTTGTGC+GGG - chr2_3:18090115-18090134 Msa0282250:intron 30.0%
! TTATAGGTTTTACATTTCGG+CGG - chr2_3:18090288-18090307 Msa0282250:intron 30.0%
TAAAGAATATGGTCGAGATT+TGG - chr2_3:18090321-18090340 Msa0282250:intron 30.0%
AAAAGAGGGAAAAGAAAATC+TGG + chr2_3:18090466-18090485 None:intergenic 30.0%
AAATTTCATCCTAACCAGTA+AGG - chr2_3:18090563-18090582 Msa0282250:intron 30.0%
AATTTCATCCTAACCAGTAA+GGG - chr2_3:18090564-18090583 Msa0282250:intron 30.0%
!! AATAGTCAACAGAAGTATCA+TGG + chr2_3:18090667-18090686 None:intergenic 30.0%
! ATCTTTAAAGATCGTGTTTG+CGG - chr2_3:18090796-18090815 Msa0282250:intron 30.0%
! TTCGTAATGTCAAAGTACTT+TGG - chr2_3:18090845-18090864 Msa0282250:intron 30.0%
ACTAGATGAAATAACATGAC+AGG + chr2_3:18090945-18090964 None:intergenic 30.0%
AACTCTTAAAATCTTACGAG+TGG - chr2_3:18091015-18091034 Msa0282250:CDS 30.0%
TATTTGCTTTCACTATGGAT+TGG - chr2_3:18091126-18091145 Msa0282250:intron 30.0%
CAAGCATAAAATTGACTATG+TGG - chr2_3:18091233-18091252 Msa0282250:intron 30.0%
! CAAATATCTTCATCCTTTTC+TGG - chr2_3:18091512-18091531 Msa0282250:intron 30.0%
CTTTAGTAGTCATTCAATTC+TGG + chr2_3:18091718-18091737 None:intergenic 30.0%
AGTTATGTGCAAACTATTCA+TGG - chr2_3:18091979-18091998 Msa0282250:intron 30.0%
TGTTAAACTCTGTTCTTCAT+AGG - chr2_3:18092047-18092066 Msa0282250:intron 30.0%
TAGTAGCTTCTTCTTAAGTT+AGG - chr2_3:18092110-18092129 Msa0282250:intron 30.0%
! GTCATTTGTTGAATGAGTAT+AGG - chr2_3:18092132-18092151 Msa0282250:intron 30.0%
TCATACTTCTATTCAATCTG+TGG - chr2_3:18092317-18092336 Msa0282250:intron 30.0%
CATACTTCTATTCAATCTGT+GGG - chr2_3:18092318-18092337 Msa0282250:intron 30.0%
CATAATCAAAGAGACATTGT+TGG + chr2_3:18092582-18092601 None:intergenic 30.0%
TGTTTCCTCAGTATATTTCT+TGG - chr2_3:18092650-18092669 Msa0282250:CDS 30.0%
CTGTCATTATGTATCAGAAT+AGG - chr2_3:18092679-18092698 Msa0282250:intron 30.0%
! ATGGAAGCTTGAAAATTTTG+AGG + chr2_3:18092720-18092739 None:intergenic 30.0%
AATAGGCATAAGATCATCAA+TGG + chr2_3:18092739-18092758 None:intergenic 30.0%
GATTCTCATTATGATATCAG+AGG + chr2_3:18092828-18092847 None:intergenic 30.0%
CAGAACAATGAAACACATAT+GGG + chr2_3:18092967-18092986 None:intergenic 30.0%
ACAGAACAATGAAACACATA+TGG + chr2_3:18092968-18092987 None:intergenic 30.0%
TGCGAGAAAGTAAACAAATA+CGG + chr2_3:18093001-18093020 None:intergenic 30.0%
GAAAAGATTGAGAATGAACA+TGG - chr2_3:18093066-18093085 Msa0282250:intron 30.0%
ATTGAACCCAAACTAGTAAT+AGG + chr2_3:18093308-18093327 None:intergenic 30.0%
CAAACTCAGATAATTCTAAC+AGG + chr2_3:18093349-18093368 None:intergenic 30.0%
! TTTGGAGTATGAACAAATGT+GGG + chr2_3:18093392-18093411 None:intergenic 30.0%
! ATTTGGAGTATGAACAAATG+TGG + chr2_3:18093393-18093412 None:intergenic 30.0%
! ATACTCCAAATGTTCAGTTT+TGG - chr2_3:18093402-18093421 Msa0282250:intron 30.0%
! TACTCCAAATGTTCAGTTTT+GGG - chr2_3:18093403-18093422 Msa0282250:intron 30.0%
TCTCTTTAGGTCATATTTCT+AGG + chr2_3:18093459-18093478 None:intergenic 30.0%
GTGTCCTATAAATTCTCTTT+AGG + chr2_3:18093472-18093491 None:intergenic 30.0%
AAAGAGAATTTATAGGACAC+GGG - chr2_3:18093472-18093491 Msa0282250:intron 30.0%
!!! CTTAAAGCTTATTTTTAGGG+AGG + chr2_3:18093968-18093987 None:intergenic 30.0%
AATCTCTTCTTTATGATGAG+TGG - chr2_3:18094126-18094145 Msa0282250:intron 30.0%
ATCTCTTCTTTATGATGAGT+GGG - chr2_3:18094127-18094146 Msa0282250:intron 30.0%
TTCGTATATGCAATGCAATA+TGG - chr2_3:18094291-18094310 Msa0282250:intron 30.0%
ATATGCAATGCAATATGGTT+TGG - chr2_3:18094296-18094315 Msa0282250:intron 30.0%
AATTCAAATTCGAGGAGATA+TGG - chr2_3:18094432-18094451 Msa0282250:intron 30.0%
!!! TTTTTTGCAAGCACTTTGAT+TGG - chr2_3:18094717-18094736 Msa0282250:five_prime_UTR 30.0%
TGAAGAAATTGACCAAATCA+AGG - chr2_3:18094744-18094763 Msa0282250:five_prime_UTR 30.0%
TCTTTGCTTGTTCAAGAGAA+CGG + chr2_3:18089255-18089274 None:intergenic 35.0%
!!! TTTGGGTTTGTTGGTTTTCA+TGG - chr2_3:18089424-18089443 Msa0282250:three_prime_UTR 35.0%
!!! AATGGTTTTTTGCGGTTCAA+TGG - chr2_3:18090175-18090194 Msa0282250:intron 35.0%
AGTTCAGATGTGGCTATTAT+AGG - chr2_3:18090272-18090291 Msa0282250:intron 35.0%
GTGTGGGAGAATAAAGAATA+TGG - chr2_3:18090310-18090329 Msa0282250:intron 35.0%
AAGTTTGATACCTGATGACA+TGG - chr2_3:18090524-18090543 Msa0282250:intron 35.0%
ATTTCATCCTAACCAGTAAG+GGG - chr2_3:18090565-18090584 Msa0282250:intron 35.0%
! GCAAACACGATCTTTAAAGA+TGG + chr2_3:18090797-18090816 None:intergenic 35.0%
AGGTCGAATATACTGTACTT+GGG + chr2_3:18091088-18091107 None:intergenic 35.0%
AAGGTCGAATATACTGTACT+TGG + chr2_3:18091089-18091108 None:intergenic 35.0%
AAGAGAAATATAGCTGGACT+GGG + chr2_3:18091290-18091309 None:intergenic 35.0%
AAAGAGAAATATAGCTGGAC+TGG + chr2_3:18091291-18091310 None:intergenic 35.0%
!! TCTGGCTTTAAAGTTCTTGA+AGG + chr2_3:18091700-18091719 None:intergenic 35.0%
CTGTTATATTGCCTCAGTAA+AGG - chr2_3:18092008-18092027 Msa0282250:intron 35.0%
TTATATTGCCTCAGTAAAGG+AGG - chr2_3:18092011-18092030 Msa0282250:intron 35.0%
AGAACAGAGTTTAACACGAA+AGG + chr2_3:18092043-18092062 None:intergenic 35.0%
CACTTGTATCAGCATAACTA+TGG + chr2_3:18092440-18092459 None:intergenic 35.0%
CATAGTTATGCTGATACAAG+TGG - chr2_3:18092438-18092457 Msa0282250:intron 35.0%
TTAAGATGAATGACACCAGA+GGG + chr2_3:18092554-18092573 None:intergenic 35.0%
ATTAAGATGAATGACACCAG+AGG + chr2_3:18092555-18092574 None:intergenic 35.0%
CTTATACAGGTTAAGGCTAT+TGG - chr2_3:18092764-18092783 Msa0282250:intron 35.0%
AATAAAGAAGCCCCAAGAAA+CGG + chr2_3:18093285-18093304 None:intergenic 35.0%
CAAATGTGGGTGAAATAACA+GGG + chr2_3:18093379-18093398 None:intergenic 35.0%
ACAAATGTGGGTGAAATAAC+AGG + chr2_3:18093380-18093399 None:intergenic 35.0%
CAAACCCAAAACTGAACATT+TGG + chr2_3:18093410-18093429 None:intergenic 35.0%
!! GTCATATTTCTAGGCAATGT+GGG + chr2_3:18093450-18093469 None:intergenic 35.0%
GAGTCTATCTCATGTTATTC+TGG - chr2_3:18093533-18093552 Msa0282250:intron 35.0%
AAATGTGAGTGCAGTATTAG+AGG + chr2_3:18093564-18093583 None:intergenic 35.0%
! CATTTTCAACCCATTCAGTA+CGG + chr2_3:18093874-18093893 None:intergenic 35.0%
TTTCTCGAGATGTTTGAAGA+AGG - chr2_3:18093914-18093933 Msa0282250:intron 35.0%
TAACTTCTGATCGACTGAAT+TGG - chr2_3:18094031-18094050 Msa0282250:CDS 35.0%
! GTTGGTTTACTGATATACCA+GGG - chr2_3:18094053-18094072 Msa0282250:CDS 35.0%
!! TATGGTAATGGTTCAGAATC+TGG + chr2_3:18094236-18094255 None:intergenic 35.0%
CACAGAGATAGTTATGGTAA+TGG + chr2_3:18094248-18094267 None:intergenic 35.0%
CAGTTACACAGAGATAGTTA+TGG + chr2_3:18094254-18094273 None:intergenic 35.0%
ACAACTCATATCACTTTGAC+AGG + chr2_3:18094359-18094378 None:intergenic 35.0%
ATATGAGTTGTGATCTAACG+AGG - chr2_3:18094368-18094387 Msa0282250:intron 35.0%
TATGAGTTGTGATCTAACGA+GGG - chr2_3:18094369-18094388 Msa0282250:intron 35.0%
AGGTAACGAATTCAAATTCG+AGG - chr2_3:18094424-18094443 Msa0282250:intron 35.0%
CAAATCCAAAGGTAGGAATA+TGG + chr2_3:18094510-18094529 None:intergenic 35.0%
CATATTCCTACCTTTGGATT+TGG - chr2_3:18094508-18094527 Msa0282250:intron 35.0%
TACAATCCAAATCCAAAGGT+AGG + chr2_3:18094517-18094536 None:intergenic 35.0%
AAGGTACAATCCAAATCCAA+AGG + chr2_3:18094521-18094540 None:intergenic 35.0%
TTTGCAATGGATCCTTGATT+TGG + chr2_3:18094759-18094778 None:intergenic 35.0%
CATATAAACTCCAGTATACC+AGG - chr2_3:18094814-18094833 Msa0282250:five_prime_UTR 35.0%
!! GAACAAGATGACTCTGAAGT+TGG - chr2_3:18089163-18089182 Msa0282250:three_prime_UTR 40.0%
CTTTGCTTGTTCAAGAGAAC+GGG + chr2_3:18089254-18089273 None:intergenic 40.0%
CCAACAAGGAGATATGTGTT+TGG + chr2_3:18089784-18089803 None:intergenic 40.0%
CCAAACACATATCTCCTTGT+TGG - chr2_3:18089781-18089800 Msa0282250:intron 40.0%
TGAGATCACACACAAGTACA+AGG - chr2_3:18089816-18089835 Msa0282250:intron 40.0%
GAGATCACACACAAGTACAA+GGG - chr2_3:18089817-18089836 Msa0282250:intron 40.0%
TACTGCCTGCTATCATTACT+TGG + chr2_3:18090142-18090161 None:intergenic 40.0%
!!! TGCGGGTTAATGGTTTTTTG+CGG - chr2_3:18090167-18090186 Msa0282250:intron 40.0%
ATTATTGAACCACTGTGCAG+TGG + chr2_3:18090216-18090235 None:intergenic 40.0%
ACTGCACAGTGGTTCAATAA+TGG - chr2_3:18090215-18090234 Msa0282250:intron 40.0%
CTGCACAGTGGTTCAATAAT+GGG - chr2_3:18090216-18090235 Msa0282250:intron 40.0%
! TCTAGCTTCAAGTTCAGATG+TGG - chr2_3:18090262-18090281 Msa0282250:intron 40.0%
GATTGCTTCTAGTGGTGAAT+AGG - chr2_3:18090353-18090372 Msa0282250:intron 40.0%
GGGAAAAGAAAATCTGGCAT+AGG + chr2_3:18090460-18090479 None:intergenic 40.0%
TTATAACAGGCCATGTCATC+AGG + chr2_3:18090537-18090556 None:intergenic 40.0%
TTTCATCCTAACCAGTAAGG+GGG - chr2_3:18090566-18090585 Msa0282250:intron 40.0%
! ATAAAACCCCCTTACTGGTT+AGG + chr2_3:18090575-18090594 None:intergenic 40.0%
GTGAGTGACGTCTATGATAA+CGG + chr2_3:18090601-18090620 None:intergenic 40.0%
ATAGACGTCACTCACTTTGT+TGG - chr2_3:18090606-18090625 Msa0282250:intron 40.0%
TAGACGTCACTCACTTTGTT+GGG - chr2_3:18090607-18090626 Msa0282250:intron 40.0%
CACTTTGTTGGGTAATCGAA+TGG - chr2_3:18090618-18090637 Msa0282250:intron 40.0%
CAGCCGTAAGCAATTAAAAG+AGG + chr2_3:18090913-18090932 None:intergenic 40.0%
!! CTTTTAATTGCTTACGGCTG+TGG - chr2_3:18090913-18090932 Msa0282250:intron 40.0%
AACTCCTGATTGATTACCCA+CGG + chr2_3:18091207-18091226 None:intergenic 40.0%
!! ACTGGGATTGGTTGATCTTA+CGG + chr2_3:18091273-18091292 None:intergenic 40.0%
! AAATATAGCTGGACTGGGAT+TGG + chr2_3:18091285-18091304 None:intergenic 40.0%
CAAAAAAGGGGAACCAGAAA+AGG + chr2_3:18091528-18091547 None:intergenic 40.0%
TCCTCAGTATATTTCTTGGC+TGG - chr2_3:18092654-18092673 Msa0282250:CDS 40.0%
AAGGAAACAAAGAGGACTGA+AGG - chr2_3:18092794-18092813 Msa0282250:intron 40.0%
CCAGATTACGCATTACATAC+TGG + chr2_3:18092865-18092884 None:intergenic 40.0%
CCAGTATGTAATGCGTAATC+TGG - chr2_3:18092862-18092881 Msa0282250:intron 40.0%
GGATCGTGGTTATTCAAGAA+AGG - chr2_3:18092883-18092902 Msa0282250:intron 40.0%
GGTTATTCAAGAAAGGAGCT+AGG - chr2_3:18092890-18092909 Msa0282250:intron 40.0%
CATATGGGTAAGCAAAACAG+AGG + chr2_3:18092952-18092971 None:intergenic 40.0%
TTGTTTACTTTCTCGCATGC+TGG - chr2_3:18093004-18093023 Msa0282250:intron 40.0%
TGTTTACTTTCTCGCATGCT+GGG - chr2_3:18093005-18093024 Msa0282250:intron 40.0%
CATGGGACTTAAAAAGTTGC+AGG - chr2_3:18093084-18093103 Msa0282250:intron 40.0%
AAGAAACAGCAAGAGACTGT+AGG - chr2_3:18093115-18093134 Msa0282250:intron 40.0%
!!! TGTTCAGTTTTGGGTTTGAG+AGG - chr2_3:18093412-18093431 Msa0282250:intron 40.0%
!!! GTTCAGTTTTGGGTTTGAGA+GGG - chr2_3:18093413-18093432 Msa0282250:intron 40.0%
!! GGTCATATTTCTAGGCAATG+TGG + chr2_3:18093451-18093470 None:intergenic 40.0%
! TCACCTTGTGAGATAGCTTT+TGG - chr2_3:18093501-18093520 Msa0282250:intron 40.0%
ACTCCAAAAGCTATCTCACA+AGG + chr2_3:18093507-18093526 None:intergenic 40.0%
ATGTCCTGTGGTAAGCATTA+AGG - chr2_3:18093597-18093616 Msa0282250:intron 40.0%
ATAGACATTTGCCTACGTTC+CGG - chr2_3:18093643-18093662 Msa0282250:intron 40.0%
ACACTCAAGACTGTAACATC+CGG + chr2_3:18093665-18093684 None:intergenic 40.0%
ATGTTACAGTCTTGAGTGTG+CGG - chr2_3:18093666-18093685 Msa0282250:intron 40.0%
AAGCCAAACTATGTGCAGAT+AGG - chr2_3:18093821-18093840 Msa0282250:intron 40.0%
GTTCCTATCTGCACATAGTT+TGG + chr2_3:18093827-18093846 None:intergenic 40.0%
GAACAGTGAGAAGAATTGCT+GGG - chr2_3:18093843-18093862 Msa0282250:intron 40.0%
! AATGCAGATCGATTAGTTGC+TGG - chr2_3:18093890-18093909 Msa0282250:intron 40.0%
TGAAGAAGGATGCCACAAAA+TGG - chr2_3:18093928-18093947 Msa0282250:intron 40.0%
! AGAGAGATCCAACCATTTTG+TGG + chr2_3:18093943-18093962 None:intergenic 40.0%
TTCTGATCGACTGAATTGGT+TGG - chr2_3:18094035-18094054 Msa0282250:CDS 40.0%
!! GGTTGGTTTACTGATATACC+AGG - chr2_3:18094052-18094071 Msa0282250:CDS 40.0%
CAGAATTCAAGAACAGCTGA+AGG - chr2_3:18094091-18094110 Msa0282250:intron 40.0%
AAGGTAGGAATATGGTTGGA+CGG + chr2_3:18094502-18094521 None:intergenic 40.0%
TCCAACCATATTCCTACCTT+TGG - chr2_3:18094502-18094521 Msa0282250:intron 40.0%
TCCAAAGGTAGGAATATGGT+TGG + chr2_3:18094506-18094525 None:intergenic 40.0%
!! TATGACCTAGTCTTGTGCAA+TGG - chr2_3:18094601-18094620 Msa0282250:CDS 40.0%
ATCTTCCATTGCACAAGACT+AGG + chr2_3:18094609-18094628 None:intergenic 40.0%
GAAAAACTCTCCTGGTATAC+TGG + chr2_3:18094827-18094846 None:intergenic 40.0%
CCATCAGCATAAACACGAAC+AGG + chr2_3:18089202-18089221 None:intergenic 45.0%
CCTGTTCGTGTTTATGCTGA+TGG - chr2_3:18089199-18089218 Msa0282250:three_prime_UTR 45.0%
TCTCTTCGTCACTGCAAGTT+CGG - chr2_3:18089874-18089893 Msa0282250:intron 45.0%
! CTTTTCTTTCCGTGAGCTTG+TGG - chr2_3:18090065-18090084 Msa0282250:intron 45.0%
! TGGTTGATTCCACAAGCTCA+CGG + chr2_3:18090077-18090096 None:intergenic 45.0%
! ATAGCAGGCAGTAGTTTGTG+CGG - chr2_3:18090149-18090168 Msa0282250:intron 45.0%
! CAGTAGTTTGTGCGGGTTAA+TGG - chr2_3:18090157-18090176 Msa0282250:intron 45.0%
! CACAGTGGTTCAATAATGGG+TGG - chr2_3:18090219-18090238 Msa0282250:intron 45.0%
!! TGGTTCAATAATGGGTGGTG+CGG - chr2_3:18090224-18090243 Msa0282250:intron 45.0%
! GTTTTACATTTCGGCGGTGT+GGG - chr2_3:18090294-18090313 Msa0282250:intron 45.0%
GCTTCAACGATTGCTTCTAG+TGG - chr2_3:18090345-18090364 Msa0282250:intron 45.0%
CTTCTAGTGGTGAATAGGCT+AGG - chr2_3:18090358-18090377 Msa0282250:intron 45.0%
TAGGTGCGATGGCAATGAAA+TGG - chr2_3:18090377-18090396 Msa0282250:intron 45.0%
TCGAGAAGAAGCAAGCTTCA+GGG + chr2_3:18090430-18090449 None:intergenic 45.0%
GGAGAATAAAACCCCCTTAC+TGG + chr2_3:18090580-18090599 None:intergenic 45.0%
GATGAAGTGAACGGTGAGAT+TGG - chr2_3:18090704-18090723 Msa0282250:intron 45.0%
AGATCGTGTTTGCGGATAAC+TGG - chr2_3:18090804-18090823 Msa0282250:intron 45.0%
GGCGTCTTTCTGATTATGTC+TGG - chr2_3:18090866-18090885 Msa0282250:intron 45.0%
AGTTCAATTGCTCTTGCTGC+AGG - chr2_3:18091154-18091173 Msa0282250:intron 45.0%
AAGTTATTCCAGATGTGCCG+TGG - chr2_3:18091187-18091206 Msa0282250:intron 45.0%
AGTTATTCCAGATGTGCCGT+GGG - chr2_3:18091188-18091207 Msa0282250:intron 45.0%
CTCAGACACAACTACAGTGA+CGG - chr2_3:18091392-18091411 Msa0282250:CDS 45.0%
TGTGCAAACTATTCATGGCG+AGG - chr2_3:18091984-18092003 Msa0282250:intron 45.0%
TATGCTGATACAAGTGGAGC+TGG - chr2_3:18092444-18092463 Msa0282250:intron 45.0%
TGATACAAGTGGAGCTGGAA+AGG - chr2_3:18092449-18092468 Msa0282250:intron 45.0%
!!! TGTTTTTTCTTCCCACCCTC+TGG - chr2_3:18092536-18092555 Msa0282250:intron 45.0%
GCCAGCCAAGAAATATACTG+AGG + chr2_3:18092658-18092677 None:intergenic 45.0%
GTAATGCGTAATCTGGATCG+TGG - chr2_3:18092869-18092888 Msa0282250:intron 45.0%
GCTAGGTGTTAGCTATGTCA+AGG - chr2_3:18092907-18092926 Msa0282250:intron 45.0%
GCAAGAGACTGTAGGAAAGA+AGG - chr2_3:18093123-18093142 Msa0282250:intron 45.0%
AATTGCCTGGATCCGTTTCT+TGG - chr2_3:18093270-18093289 Msa0282250:intron 45.0%
ATTGCCTGGATCCGTTTCTT+GGG - chr2_3:18093271-18093290 Msa0282250:intron 45.0%
! TTCATGCTCTAGATGTCCTG+TGG - chr2_3:18093585-18093604 Msa0282250:intron 45.0%
CACACCTTAATGCTTACCAC+AGG + chr2_3:18093604-18093623 None:intergenic 45.0%
CGGCAGACCAATGAATTACT+AGG - chr2_3:18093686-18093705 Msa0282250:intron 45.0%
GGAACAGTGAGAAGAATTGC+TGG - chr2_3:18093842-18093861 Msa0282250:intron 45.0%
TGGGATGAACCGTACTGAAT+GGG - chr2_3:18093862-18093881 Msa0282250:intron 45.0%
GAAGGATGCCACAAAATGGT+TGG - chr2_3:18093932-18093951 Msa0282250:intron 45.0%
!! GAGAATCTTGGGTTGGAACT+TGG + chr2_3:18094465-18094484 None:intergenic 45.0%
TGTTGGAGAGAATCTTGGGT+TGG + chr2_3:18094472-18094491 None:intergenic 45.0%
GCACTGTTGGAGAGAATCTT+GGG + chr2_3:18094476-18094495 None:intergenic 45.0%
TGCACTGTTGGAGAGAATCT+TGG + chr2_3:18094477-18094496 None:intergenic 45.0%
ATTGACTGTGCAGGTTGTAG+AGG - chr2_3:18094566-18094585 Msa0282250:intron 45.0%
!!! AATATAATAGTATTTTAATT+TGG - chr2_3:18091468-18091487 Msa0282250:intron 5.0%
!! CTATTAATAAAAAATATTAT+TGG + chr2_3:18093202-18093221 None:intergenic 5.0%
CTTGTTCAAGAGAACGGGCA+TGG + chr2_3:18089249-18089268 None:intergenic 50.0%
CATCACTGCAGCATCCAACA+AGG + chr2_3:18089798-18089817 None:intergenic 50.0%
CGGGTCCAAGTAATGATAGC+AGG - chr2_3:18090134-18090153 Msa0282250:intron 50.0%
! TAGCAGGCAGTAGTTTGTGC+GGG - chr2_3:18090150-18090169 Msa0282250:intron 50.0%
! GACAGTTTTCCACTGCACAG+TGG - chr2_3:18090204-18090223 Msa0282250:intron 50.0%
!! TTCAATAATGGGTGGTGCGG+TGG - chr2_3:18090227-18090246 Msa0282250:intron 50.0%
! GGTTTTACATTTCGGCGGTG+TGG - chr2_3:18090293-18090312 Msa0282250:intron 50.0%
CTCGAGAAGAAGCAAGCTTC+AGG + chr2_3:18090431-18090450 None:intergenic 50.0%
TCGTGTTTGCGGATAACTGG+CGG - chr2_3:18090807-18090826 Msa0282250:intron 50.0%
ATTGCTTACGGCTGTGGAGT+AGG - chr2_3:18090919-18090938 Msa0282250:intron 50.0%
TCAATTGCTCTTGCTGCAGG+TGG - chr2_3:18091157-18091176 Msa0282250:intron 50.0%
CAATTGCTCTTGCTGCAGGT+GGG - chr2_3:18091158-18091177 Msa0282250:intron 50.0%
TTGATTACCCACGGCACATC+TGG + chr2_3:18091198-18091217 None:intergenic 50.0%
TGTGCCGTGGGTAATCAATC+AGG - chr2_3:18091200-18091219 Msa0282250:intron 50.0%
CGTCACTGTAGTTGTGTCTG+AGG + chr2_3:18091394-18091413 None:intergenic 50.0%
GGATAACGCCTCCTTTACTG+AGG + chr2_3:18092022-18092041 None:intergenic 50.0%
GATGAATGACACCAGAGGGT+GGG + chr2_3:18092550-18092569 None:intergenic 50.0%
AGATGAATGACACCAGAGGG+TGG + chr2_3:18092551-18092570 None:intergenic 50.0%
GGTAAGCAAAACAGAGGAGC+TGG + chr2_3:18092946-18092965 None:intergenic 50.0%
TTACTTTCTCGCATGCTGGG+AGG - chr2_3:18093008-18093027 Msa0282250:intron 50.0%
TTGCCTGGATCCGTTTCTTG+GGG - chr2_3:18093272-18093291 Msa0282250:intron 50.0%
GACTGTAACATCCGGAACGT+AGG + chr2_3:18093657-18093676 None:intergenic 50.0%
CTGGGATGAACCGTACTGAA+TGG - chr2_3:18093861-18093880 Msa0282250:intron 50.0%
! TGTCTCTGATTGCTGTTCCC+TGG + chr2_3:18094073-18094092 None:intergenic 50.0%
! ACGAGGGTACAACCGTACAA+CGG - chr2_3:18094385-18094404 Msa0282250:intron 50.0%
ACAACCGTACAACGGTTGCA+TGG - chr2_3:18094393-18094412 Msa0282250:intron 50.0%
TGCACCATGCAACCGTTGTA+CGG + chr2_3:18094400-18094419 None:intergenic 50.0%
!! TTTGGCTGCATTGACTGTGC+AGG - chr2_3:18094557-18094576 Msa0282250:intron 50.0%
GGTGAATAGGCTAGGTGCGA+TGG - chr2_3:18090366-18090385 Msa0282250:intron 55.0%
CAGGGCTCTCGAAGACAACA+AGG + chr2_3:18090412-18090431 None:intergenic 55.0%
AAGCCCCAAGAAACGGATCC+AGG + chr2_3:18093278-18093297 None:intergenic 55.0%
ACGGTTGCATGGTGCAACAG+AGG - chr2_3:18094404-18094423 Msa0282250:intron 55.0%
TATGTGTGCGTGCGCGTGTG+CGG + chr2_3:18091618-18091637 None:intergenic 60.0%
!! GGTTGGACGGACTGCACTGT+TGG + chr2_3:18094489-18094508 None:intergenic 60.0%
TGGGTGGTGCGGTGGATCTG+TGG - chr2_3:18090235-18090254 Msa0282250:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 18089014 18094846 18089014 ID=Msa0282250;Name=Msa0282250
chr2_3 mRNA 18089014 18094846 18089014 ID=Msa0282250-mRNA-1;Parent=Msa0282250;Name=Msa0282250-mRNA-1;_AED=0.09;_eAED=0.09;_QI=143|1|1|1|1|1|8|638|285
chr2_3 exon 18089014 18089786 18089014 ID=Msa0282250-mRNA-1:exon:7445;Parent=Msa0282250-mRNA-1
chr2_3 exon 18089911 18090021 18089911 ID=Msa0282250-mRNA-1:exon:7444;Parent=Msa0282250-mRNA-1
chr2_3 exon 18090716 18090796 18090716 ID=Msa0282250-mRNA-1:exon:7443;Parent=Msa0282250-mRNA-1
chr2_3 exon 18090932 18091087 18090932 ID=Msa0282250-mRNA-1:exon:7442;Parent=Msa0282250-mRNA-1
chr2_3 exon 18091375 18091417 18091375 ID=Msa0282250-mRNA-1:exon:7441;Parent=Msa0282250-mRNA-1
chr2_3 exon 18092589 18092684 18092589 ID=Msa0282250-mRNA-1:exon:7440;Parent=Msa0282250-mRNA-1
chr2_3 exon 18093970 18094083 18093970 ID=Msa0282250-mRNA-1:exon:7439;Parent=Msa0282250-mRNA-1
chr2_3 exon 18094582 18094846 18094582 ID=Msa0282250-mRNA-1:exon:7438;Parent=Msa0282250-mRNA-1
chr2_3 five_prime_UTR 18094704 18094846 18094704 ID=Msa0282250-mRNA-1:five_prime_utr;Parent=Msa0282250-mRNA-1
chr2_3 CDS 18094582 18094703 18094582 ID=Msa0282250-mRNA-1:cds;Parent=Msa0282250-mRNA-1
chr2_3 CDS 18093970 18094083 18093970 ID=Msa0282250-mRNA-1:cds;Parent=Msa0282250-mRNA-1
chr2_3 CDS 18092589 18092684 18092589 ID=Msa0282250-mRNA-1:cds;Parent=Msa0282250-mRNA-1
chr2_3 CDS 18091375 18091417 18091375 ID=Msa0282250-mRNA-1:cds;Parent=Msa0282250-mRNA-1
chr2_3 CDS 18090932 18091087 18090932 ID=Msa0282250-mRNA-1:cds;Parent=Msa0282250-mRNA-1
chr2_3 CDS 18090716 18090796 18090716 ID=Msa0282250-mRNA-1:cds;Parent=Msa0282250-mRNA-1
chr2_3 CDS 18089911 18090021 18089911 ID=Msa0282250-mRNA-1:cds;Parent=Msa0282250-mRNA-1
chr2_3 CDS 18089652 18089786 18089652 ID=Msa0282250-mRNA-1:cds;Parent=Msa0282250-mRNA-1
chr2_3 three_prime_UTR 18089014 18089651 18089014 ID=Msa0282250-mRNA-1:three_prime_utr;Parent=Msa0282250-mRNA-1
Gene Sequence

>Msa0282250

ATGAATGAACAAGATGACTCTGAAGTTGGCAAAAACGATAAACCTGTTCGTGTTTATGCTGATGGAATTTACGATCTCTTTCACTTTGGCCATGCCCGTTCTCTTGAACAAGCAAAGAAATCGTTTCCAAACACATATCTCCTTGTTGGATGCTGCAGTGATGAGATCACACACAAGTACAAGGGTAAAACAGTTATGAATGAGCAAGAACGCTATGAGTCTCTTCGTCACTGCAAGTGGGTTGATGAAGTTATTCCAGATGTGCCGTGGGTAATCAATCAGGAGTTCATTGACAAGCATAAAATTGACTATGTGGCACATGACGCTCTTCCTTATGCTGATACAAGTGGAGCTGGAAAGGATGTCTATGAATTTGTTAAGGCTATTGGAAAATTTAAGGAAACAAAGAGGACTGAAGGAATTTCTACCTCTGATATCATAATGAGAATCATCAAGGATTACAACCAGTATGTAATGCGTAATCTGGATCGTGGTTATTCAAGAAAGGAGCTAGGTGTTAGCTATGTCAAGGAGAAAAGATTGAGAATGAACATGGGACTTAAAAAGTTGCAGGAGAGAGTCAAGAAACAGCAAGAGACTGTAGGAAAGAAGATAGGAACAGTGAGAAGAATTGCTGGGATGAACCGTACTGAATGGGTTGAAAATGCAGATCGATTAGTTGCTGGATTTCTCGAGATGTTTGAAGAAGGATGCCACAAAATGGGAACAGCAATCAGAGACAGAATTCAAGAACAGCTGAAGGCACAACAGCTAAAATCTCTTCTTTATGATGAGTGGGATGATGACGTTGACGACGAATTCTATGAAGATGAATCTGTAGAATACTACAGCGACTAA

Protein sequence

>Msa0282250

MNEQDDSEVGKNDKPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCSDEITHKYKGKTVMNEQERYESLRHCKWVDEVIPDVPWVINQEFIDKHKIDYVAHDALPYADTSGAGKDVYEFVKAIGKFKETKRTEGISTSDIIMRIIKDYNQYVMRNLDRGYSRKELGVSYVKEKRLRMNMGLKKLQERVKKQQETVGKKIGTVRRIAGMNRTEWVENADRLVAGFLEMFEEGCHKMGTAIRDRIQEQLKAQQLKSLLYDEWDDDVDDEFYEDESVEYYSD*