Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810040 | XP_013454044.1 | 95.380 | 303 | 14 | 0 | 1 | 303 | 1 | 303 | 0.0 | 609 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810040 | sp|Q1LZ86|ABHD6_BOVIN | 22.968 | 283 | 186 | 12 | 39 | 303 | 61 | 329 | 8.73e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810040 | A0A072UQE1 | 95.380 | 303 | 14 | 0 | 1 | 303 | 1 | 303 | 0.0 | 609 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0621890 | Msa0810040 | 0.804668 | 1.933993e-49 | -8.615850e-47 |
| Msa0654060 | Msa0810040 | 0.801705 | 7.935973e-49 | -8.615850e-47 |
| Msa0739570 | Msa0810040 | 0.803459 | 3.450966e-49 | -8.615850e-47 |
| Msa0810040 | Msa1069300 | 0.800537 | 1.375775e-48 | -8.615850e-47 |
| Msa0810040 | Msa1302150 | 0.804036 | 2.619858e-49 | -8.615850e-47 |
| Msa0810040 | Msa1323060 | 0.802664 | 5.038715e-49 | -8.615850e-47 |
| Msa0810040 | Msa1327820 | 0.802820 | 4.679366e-49 | -8.615850e-47 |
| Msa0810040 | Msa1337340 | 0.812661 | 3.789894e-51 | -8.615850e-47 |
| Msa0810040 | Msa1355260 | 0.805616 | 1.224802e-49 | -8.615850e-47 |
| Msa0227500 | Msa0810040 | 0.802618 | 5.151229e-49 | -8.615850e-47 |
| Msa0371610 | Msa0810040 | 0.801864 | 7.361227e-49 | -8.615850e-47 |
| Msa0351220 | Msa0810040 | 0.805448 | 1.328214e-49 | -8.615850e-47 |
| Msa0581340 | Msa0810040 | 0.801650 | 8.145863e-49 | -8.615850e-47 |
| Msa0583590 | Msa0810040 | 0.810215 | 1.287438e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810040 | MtrunA17_Chr5g0426241 | 95.380 | 303 | 14 | 0 | 1 | 303 | 1 | 303 | 0.0 | 609 |
| Msa0810040 | MtrunA17_Chr2g0279171 | 59.076 | 303 | 121 | 2 | 2 | 303 | 6 | 306 | 6.04e-134 | 383 |
| Msa0810040 | MtrunA17_Chr3g0123881 | 58.389 | 298 | 122 | 1 | 2 | 299 | 4 | 299 | 5.25e-131 | 375 |
| Msa0810040 | MtrunA17_Chr3g0136411 | 39.519 | 291 | 169 | 5 | 12 | 298 | 13 | 300 | 5.31e-68 | 214 |
| Msa0810040 | MtrunA17_Chr5g0404211 | 35.154 | 293 | 178 | 6 | 13 | 298 | 9 | 296 | 5.28e-57 | 186 |
| Msa0810040 | MtrunA17_Chr8g0381981 | 55.215 | 163 | 54 | 3 | 158 | 303 | 1 | 161 | 8.93e-57 | 181 |
| Msa0810040 | MtrunA17_Chr8g0382001 | 55.970 | 134 | 59 | 0 | 1 | 134 | 1 | 134 | 6.89e-54 | 172 |
| Msa0810040 | MtrunA17_Chr8g0373201 | 32.323 | 297 | 171 | 5 | 22 | 298 | 19 | 305 | 2.28e-48 | 164 |
| Msa0810040 | MtrunA17_Chr5g0404141 | 31.058 | 293 | 177 | 5 | 22 | 298 | 19 | 302 | 2.31e-46 | 159 |
| Msa0810040 | MtrunA17_Chr5g0404161 | 30.952 | 210 | 125 | 4 | 12 | 209 | 23 | 224 | 4.68e-35 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810040 | AT5G09430.1 | 59.150 | 306 | 118 | 2 | 1 | 301 | 7 | 310 | 1.69e-134 | 384 |
| Msa0810040 | AT1G78210.1 | 57.566 | 304 | 126 | 2 | 1 | 301 | 1 | 304 | 3.52e-132 | 378 |
| Msa0810040 | AT4G39955.1 | 56.522 | 299 | 127 | 2 | 1 | 298 | 1 | 297 | 1.83e-130 | 374 |
| Msa0810040 | AT5G21950.1 | 41.379 | 290 | 160 | 5 | 16 | 299 | 17 | 302 | 1.53e-68 | 216 |
| Msa0810040 | AT5G21950.6 | 41.379 | 290 | 160 | 5 | 16 | 299 | 69 | 354 | 5.92e-68 | 216 |
| Msa0810040 | AT5G21950.7 | 41.339 | 254 | 139 | 5 | 16 | 263 | 17 | 266 | 2.01e-59 | 191 |
| Msa0810040 | AT1G72620.1 | 39.502 | 281 | 161 | 7 | 24 | 299 | 56 | 332 | 3.31e-56 | 185 |
| Msa0810040 | AT1G17430.1 | 38.408 | 289 | 159 | 7 | 24 | 301 | 52 | 332 | 4.59e-56 | 184 |
| Msa0810040 | AT4G33180.1 | 35.836 | 293 | 178 | 6 | 16 | 301 | 18 | 307 | 5.56e-56 | 183 |
| Msa0810040 | AT2G18360.1 | 32.886 | 298 | 179 | 4 | 22 | 303 | 19 | 311 | 8.28e-54 | 178 |
| Msa0810040 | AT4G36610.1 | 31.081 | 296 | 185 | 4 | 22 | 303 | 19 | 309 | 3.82e-48 | 163 |
| Msa0810040 | AT2G18360.2 | 32.046 | 259 | 155 | 4 | 22 | 264 | 19 | 272 | 1.63e-45 | 155 |
| Msa0810040 | AT5G21950.3 | 40.609 | 197 | 110 | 3 | 16 | 208 | 17 | 210 | 5.74e-43 | 147 |
| Msa0810040 | AT5G21950.2 | 40.609 | 197 | 110 | 3 | 16 | 208 | 17 | 210 | 5.74e-43 | 147 |
| Msa0810040 | AT5G21950.5 | 40.609 | 197 | 110 | 3 | 16 | 208 | 69 | 262 | 1.80e-42 | 147 |
| Msa0810040 | AT5G21950.4 | 40.609 | 197 | 110 | 3 | 16 | 208 | 69 | 262 | 1.80e-42 | 147 |
| Msa0810040 | AT4G33180.2 | 37.778 | 180 | 106 | 3 | 16 | 190 | 18 | 196 | 9.97e-34 | 123 |
Find 108 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGCCTACATTAATTATT+TGG | 0.057170 | 5_3:+37998602 | Msa0810040:intron |
| TGAAATTCTTCCGTTCTTTC+GGG | 0.184302 | 5_3:-37997106 | None:intergenic |
| GCCTCGGCGCCAATGCTTTA+TGG | 0.184523 | 5_3:+37996993 | Msa0810040:CDS |
| GATTTGAATCACAGGCATTT+AGG | 0.187250 | 5_3:+37998757 | Msa0810040:intron |
| TTGAAATTCTTCCGTTCTTT+CGG | 0.196803 | 5_3:-37997107 | None:intergenic |
| GCAGCCTACATTAATTATTT+GGG | 0.250897 | 5_3:+37998603 | Msa0810040:intron |
| GTTATTTCCTGTTTCTGATT+TGG | 0.256321 | 5_3:+37997306 | Msa0810040:CDS |
| GGATGAAGCTGCTAATATTT+TGG | 0.259695 | 5_3:+37997327 | Msa0810040:CDS |
| TATCTTGAAGTCATTTCTAT+TGG | 0.274371 | 5_3:+37998855 | Msa0810040:CDS |
| GTTGAATTTGGTTTGGAGTT+TGG | 0.282389 | 5_3:-37996650 | None:intergenic |
| CGCCAATGCTTTATGGCAAT+GGG | 0.307277 | 5_3:+37997000 | Msa0810040:CDS |
| CAAGTATTCCCTTTGGAACT+TGG | 0.312549 | 5_3:+37998637 | Msa0810040:CDS |
| TTCTGTCCTTTGCAATGGCT+TGG | 0.317817 | 5_3:-37998325 | None:intergenic |
| ATGAGTGGTGAAGTTGAATT+TGG | 0.328096 | 5_3:-37996662 | None:intergenic |
| TGTTAGGTGCCGGTCTTCTA+TGG | 0.328159 | 5_3:-37996439 | None:intergenic |
| AAATGAACCTGAGATATCTT+AGG | 0.334634 | 5_3:-37998362 | None:intergenic |
| ATTTGAATCACAGGCATTTA+GGG | 0.337555 | 5_3:+37998758 | Msa0810040:intron |
| ATTCTTCAATTATCATTGTT+AGG | 0.347233 | 5_3:-37996455 | None:intergenic |
| GTGGAGAAGGTTGTGATTTG+TGG | 0.347811 | 5_3:+37997244 | Msa0810040:CDS |
| TTGTGGATCAGGGGTGAGTT+TGG | 0.359651 | 5_3:+37997261 | Msa0810040:CDS |
| GGGTTTGTAGCGTATAGTTT+AGG | 0.371628 | 5_3:+37997202 | Msa0810040:CDS |
| TATGAATTAAGGGAGTAATA+TGG | 0.375195 | 5_3:-37996534 | None:intergenic |
| GTGAGGAATGTGAGTGTTGT+GGG | 0.383177 | 5_3:+37997166 | Msa0810040:CDS |
| TTGGTGAAAGATATGAATTA+AGG | 0.384818 | 5_3:-37996545 | None:intergenic |
| AAGGTTGTGATTTGTGGATC+AGG | 0.400067 | 5_3:+37997250 | Msa0810040:CDS |
| TTAAATAATATTGATTTATG+TGG | 0.414564 | 5_3:-37996319 | None:intergenic |
| TTCGACCACATCGTTTGGCT+TGG | 0.417535 | 5_3:+37997398 | Msa0810040:CDS |
| TGTGAAGTATAAAGAGTTTG+TGG | 0.429449 | 5_3:+37997225 | Msa0810040:CDS |
| ACGGAACAATAATGCATTGT+TGG | 0.437761 | 5_3:+37996921 | Msa0810040:CDS |
| GTTTAACTGAAACAAGAAAC+TGG | 0.439521 | 5_3:+37996840 | Msa0810040:CDS |
| CCGTGGATTAAGAGTAGGTT+TGG | 0.440139 | 5_3:-37996971 | None:intergenic |
| AAGAGAAAGGAAAACAACTA+TGG | 0.442160 | 5_3:+37998930 | Msa0810040:three_prime_UTR |
| TTGTGGGGTTGAGTTATGGT+GGG | 0.442930 | 5_3:+37997182 | Msa0810040:CDS |
| AGTGTTGTGGGGTTGAGTTA+TGG | 0.443139 | 5_3:+37997178 | Msa0810040:CDS |
| ATATTTCGTCACGTGTTCAA+TGG | 0.444585 | 5_3:-37996506 | None:intergenic |
| CACAAACTCCTCAAAAGCTT+AGG | 0.445881 | 5_3:+37997353 | Msa0810040:CDS |
| GCGCCAATGCTTTATGGCAA+TGG | 0.449507 | 5_3:+37996999 | Msa0810040:CDS |
| GTTGTGGGGTTGAGTTATGG+TGG | 0.450760 | 5_3:+37997181 | Msa0810040:CDS |
| AAGCATTGGCGCCGAGGCCG+TGG | 0.453888 | 5_3:-37996988 | None:intergenic |
| GAAGAGAAGGATATTAGAGA+AGG | 0.455398 | 5_3:+37997283 | Msa0810040:CDS |
| GCTTCATCCAAATCAGAAAC+AGG | 0.455482 | 5_3:-37997313 | None:intergenic |
| AAACACTGCGTCATACTGTT+TGG | 0.464305 | 5_3:-37996815 | None:intergenic |
| TGGTGAAAGATATGAATTAA+GGG | 0.465548 | 5_3:-37996544 | None:intergenic |
| CAAGATATTGTAGAACTCCT+TGG | 0.465601 | 5_3:-37998839 | None:intergenic |
| AATGAACCTGAGATATCTTA+GGG | 0.467659 | 5_3:-37998361 | None:intergenic |
| ACATGATCAAGTATTCCCTT+TGG | 0.471964 | 5_3:+37998630 | Msa0810040:CDS |
| GTATAAAGAGTTTGTGGAGA+AGG | 0.472110 | 5_3:+37997231 | Msa0810040:CDS |
| ATTTGAACTAGGACTTGATC+AGG | 0.473453 | 5_3:-37998902 | None:intergenic |
| TGCTTGCTGCAGAGGTAGAA+TGG | 0.474009 | 5_3:+37999352 | Msa0810040:intron |
| GTGCTGTGTGAAAGAGAGAT+TGG | 0.475221 | 5_3:-37996564 | None:intergenic |
| TGGTGAAGTTGAATTTGGTT+TGG | 0.477919 | 5_3:-37996657 | None:intergenic |
| TGACCTCCCTAAGATATCTC+AGG | 0.482755 | 5_3:+37998355 | Msa0810040:CDS |
| AGGGGTGAGTTTGGAAGAGA+AGG | 0.483774 | 5_3:+37997270 | Msa0810040:CDS |
| CGATCAACATTCACCGGTGC+AGG | 0.488016 | 5_3:+37996869 | Msa0810040:CDS |
| CAATTATCATTGTTAGGTGC+CGG | 0.488744 | 5_3:-37996449 | None:intergenic |
| TTCCACACAAAATGCATGCC+CGG | 0.489853 | 5_3:-37998812 | None:intergenic |
| GGAGAGCATTCAAATACAAA+AGG | 0.492536 | 5_3:+37999377 | Msa0810040:three_prime_UTR |
| ACAAACTCCTCAAAAGCTTA+GGG | 0.501131 | 5_3:+37997354 | Msa0810040:CDS |
| AGGTTGTGATTTGTGGATCA+GGG | 0.502586 | 5_3:+37997251 | Msa0810040:CDS |
| GTTCAAATGCCAAAAGAGAA+AGG | 0.504954 | 5_3:+37998917 | Msa0810040:three_prime_UTR |
| TGTGAGGAATGTGAGTGTTG+TGG | 0.522425 | 5_3:+37997165 | Msa0810040:CDS |
| GTTGTGTTAGATTGCGGATG+AGG | 0.522581 | 5_3:-37997027 | None:intergenic |
| AAGAGAAGGATATTAGAGAA+GGG | 0.525360 | 5_3:+37997284 | Msa0810040:CDS |
| TAGTGGTGATCAAGAATGCC+GGG | 0.538388 | 5_3:+37998794 | Msa0810040:CDS |
| AATTTGAGTAGGCTATGTGC+AGG | 0.538549 | 5_3:+37998273 | Msa0810040:intron |
| AGGGGACAATGCTCAAATAG+TGG | 0.539089 | 5_3:+37998777 | Msa0810040:CDS |
| TGCTACCGATCAACATTCAC+CGG | 0.540437 | 5_3:+37996863 | Msa0810040:CDS |
| TCTCCCCAAATAATTAATGT+AGG | 0.547534 | 5_3:-37998607 | None:intergenic |
| CACGTCTCGACCCGAAAGAA+CGG | 0.550232 | 5_3:+37997096 | Msa0810040:CDS |
| GCCATAAAGCATTGGCGCCG+AGG | 0.551141 | 5_3:-37996994 | None:intergenic |
| TGTGGAACGGAGACCTGCAC+CGG | 0.552081 | 5_3:-37996882 | None:intergenic |
| ATCTGTGGCCAAGTTCCAAA+GGG | 0.552308 | 5_3:-37998645 | None:intergenic |
| ATTATGAATTTGTGACCACT+TGG | 0.553656 | 5_3:-37996691 | None:intergenic |
| ACCCCATTGCCATAAAGCAT+TGG | 0.556342 | 5_3:-37997002 | None:intergenic |
| TTAGGTCAGTTATTGTGGAA+CGG | 0.561360 | 5_3:-37996895 | None:intergenic |
| CCTCCAAAGAAAACAAGGTC+CGG | 0.562615 | 5_3:-37997067 | None:intergenic |
| CAAAATAAACATGGCCACGC+AGG | 0.562862 | 5_3:+37996586 | Msa0810040:five_prime_UTR |
| TCAAGCTGAGTGTGTGATGA+AGG | 0.563666 | 5_3:+37997126 | Msa0810040:CDS |
| CGAGGCCGTGGATTAAGAGT+AGG | 0.565138 | 5_3:-37996976 | None:intergenic |
| ATAGTGGTGATCAAGAATGC+CGG | 0.565406 | 5_3:+37998793 | Msa0810040:CDS |
| AATCTGTGGCCAAGTTCCAA+AGG | 0.566254 | 5_3:-37998646 | None:intergenic |
| CAGCCTACATTAATTATTTG+GGG | 0.569642 | 5_3:+37998604 | Msa0810040:intron |
| AACTTGGCCACAGATTGAAA+AGG | 0.586739 | 5_3:+37998653 | Msa0810040:CDS |
| AAATCATGAAGGAAGCAAGA+AGG | 0.591272 | 5_3:-37997424 | None:intergenic |
| TGCTGCAGAGGTAGAATGGT+AGG | 0.592311 | 5_3:+37999356 | Msa0810040:intron |
| CCATTGTGTCCATAGAAGAC+CGG | 0.599469 | 5_3:+37996430 | Msa0810040:five_prime_UTR |
| ACTCTTCAATGTATACGTAC+CGG | 0.608199 | 5_3:+37997048 | Msa0810040:CDS |
| ACAATAACTGACCTAAAAGA+CGG | 0.610006 | 5_3:+37996902 | Msa0810040:CDS |
| TTACATGAATGAAATCATGA+AGG | 0.613530 | 5_3:-37997435 | None:intergenic |
| CTGCACCGGTGAATGTTGAT+CGG | 0.616681 | 5_3:-37996868 | None:intergenic |
| TGAAGAGTTGTGTTAGATTG+CGG | 0.618679 | 5_3:-37997033 | None:intergenic |
| ACCACTCATTCATTTCCAAG+TGG | 0.622589 | 5_3:+37996676 | Msa0810040:five_prime_UTR |
| CACACAGCACAAAATAAACA+TGG | 0.629403 | 5_3:+37996577 | Msa0810040:five_prime_UTR |
| TGAGGAATGTGAGTGTTGTG+GGG | 0.629615 | 5_3:+37997167 | Msa0810040:CDS |
| GGCAACCAAGCCAAACGATG+TGG | 0.631769 | 5_3:-37997403 | None:intergenic |
| CTACTCTTAATCCACGGCCT+CGG | 0.636289 | 5_3:+37996977 | Msa0810040:CDS |
| TTTGAATCACAGGCATTTAG+GGG | 0.641677 | 5_3:+37998759 | Msa0810040:intron |
| CCAAACCTACTCTTAATCCA+CGG | 0.645888 | 5_3:+37996971 | Msa0810040:CDS |
| ATGACCCTCCAAAGAAAACA+AGG | 0.654054 | 5_3:-37997072 | None:intergenic |
| ATTGATCCAAGCCATTGCAA+AGG | 0.655390 | 5_3:+37998319 | Msa0810040:CDS |
| CCGGTCTTCTATGGACACAA+TGG | 0.656615 | 5_3:-37996430 | None:intergenic |
| GGTTGTGATTTGTGGATCAG+GGG | 0.662803 | 5_3:+37997252 | Msa0810040:CDS |
| TAATGGAAATGAAGTGTGTG+AGG | 0.683645 | 5_3:+37997149 | Msa0810040:CDS |
| ACCACTTGGAAATGAATGAG+TGG | 0.688110 | 5_3:-37996677 | None:intergenic |
| TGAGTGTGTGATGAAGGTAA+TGG | 0.699287 | 5_3:+37997132 | Msa0810040:CDS |
| ATTTGAGTAGGCTATGTGCA+GGG | 0.704731 | 5_3:+37998274 | Msa0810040:intron |
| GCCAATGCTTTATGGCAATG+GGG | 0.711559 | 5_3:+37997001 | Msa0810040:CDS |
| GAACCTGAGATATCTTAGGG+AGG | 0.715923 | 5_3:-37998358 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATAATATTGATTTATG+TGG | - | chr5_3:37996322-37996341 | None:intergenic | 10.0% |
| !!! | TATAAATTTTTTTGTTTTGA+AGG | - | chr5_3:37996361-37996380 | None:intergenic | 10.0% |
| !!! | TTTAATTTTTCATTTGATAT+AGG | + | chr5_3:37996385-37996404 | Msa0810040:five_prime_UTR | 10.0% |
| !! | AAAAGTTAAAATAACAAAAA+TGG | - | chr5_3:37996740-37996759 | None:intergenic | 10.0% |
| !! | ATTATGTTTAATCATGTTTA+GGG | + | chr5_3:37997864-37997883 | Msa0810040:intron | 15.0% |
| !!! | ACTTTTAATAACTAAAACTA+TGG | + | chr5_3:37998211-37998230 | Msa0810040:intron | 15.0% |
| !! | CAATGGTAGATAAAAATATT+TGG | - | chr5_3:37996416-37996435 | None:intergenic | 20.0% |
| !! | ATTCTTCAATTATCATTGTT+AGG | - | chr5_3:37996458-37996477 | None:intergenic | 20.0% |
| !! | TTAAAGTATATATAAAGCGT+AGG | + | chr5_3:37997527-37997546 | Msa0810040:intron | 20.0% |
| !!! | AGTTTTACCTTGATATAATA+TGG | + | chr5_3:37997690-37997709 | Msa0810040:intron | 20.0% |
| !! | GATTATGTTTAATCATGTTT+AGG | + | chr5_3:37997863-37997882 | Msa0810040:intron | 20.0% |
| !! | TATAATTGATGAATTTGAGT+AGG | + | chr5_3:37998262-37998281 | Msa0810040:intron | 20.0% |
| !! | CCATTACAAAATTATTACAA+TGG | - | chr5_3:37998552-37998571 | None:intergenic | 20.0% |
| !!! | CCATTGTAATAATTTTGTAA+TGG | + | chr5_3:37998549-37998568 | Msa0810040:intron | 20.0% |
| !! | TTTGTAATGGTTAAATTAAG+AGG | + | chr5_3:37998562-37998581 | Msa0810040:intron | 20.0% |
| !!! | ATTTTGAATTTTGAACTCAT+TGG | + | chr5_3:37998735-37998754 | Msa0810040:intron | 20.0% |
| !! | AAAAAAAAAAAGTAAAAGCG+CGG | - | chr5_3:37999332-37999351 | None:intergenic | 20.0% |
| ! | TATGAATTAAGGGAGTAATA+TGG | - | chr5_3:37996537-37996556 | None:intergenic | 25.0% |
| ! | TGGTGAAAGATATGAATTAA+GGG | - | chr5_3:37996547-37996566 | None:intergenic | 25.0% |
| ! | TTGGTGAAAGATATGAATTA+AGG | - | chr5_3:37996548-37996567 | None:intergenic | 25.0% |
| ! | AAAAAAAAATTATACCTGCG+TGG | - | chr5_3:37996603-37996622 | None:intergenic | 25.0% |
| ! | TTACATGAATGAAATCATGA+AGG | - | chr5_3:37997438-37997457 | None:intergenic | 25.0% |
| ! | GGTATCTAATCAAACAATAT+CGG | - | chr5_3:37997566-37997585 | None:intergenic | 25.0% |
| !!! | TTTTTTCTATGTAGACAAAG+TGG | - | chr5_3:37997637-37997656 | None:intergenic | 25.0% |
| ! | AATGAAAGCAACAAAAATGT+CGG | + | chr5_3:37997659-37997678 | Msa0810040:intron | 25.0% |
| ! | TGTTCTACCATATTATATCA+AGG | - | chr5_3:37997700-37997719 | None:intergenic | 25.0% |
| ! | ATTTCTCAACTCAACATATA+AGG | + | chr5_3:37997761-37997780 | Msa0810040:intron | 25.0% |
| ! | TTATGAGCAAACATGATTAT+AGG | + | chr5_3:37997829-37997848 | Msa0810040:intron | 25.0% |
| !! | CTATGGTATTGAAAATAAAG+AGG | + | chr5_3:37998228-37998247 | Msa0810040:intron | 25.0% |
| !!! | ATTTCTACTTTTCTCTTAGT+TGG | + | chr5_3:37998381-37998400 | Msa0810040:intron | 25.0% |
| !! | ATATTAACCTTTTCAATCTG+TGG | - | chr5_3:37998663-37998682 | None:intergenic | 25.0% |
| ! | TATCTTGAAGTCATTTCTAT+TGG | + | chr5_3:37998855-37998874 | Msa0810040:CDS | 25.0% |
| ATTATGAATTTGTGACCACT+TGG | - | chr5_3:37996694-37996713 | None:intergenic | 30.0% | |
| GTTTAACTGAAACAAGAAAC+TGG | + | chr5_3:37996840-37996859 | Msa0810040:CDS | 30.0% | |
| ACAATAACTGACCTAAAAGA+CGG | + | chr5_3:37996902-37996921 | Msa0810040:CDS | 30.0% | |
| TTGAAATTCTTCCGTTCTTT+CGG | - | chr5_3:37997110-37997129 | None:intergenic | 30.0% | |
| TGTGAAGTATAAAGAGTTTG+TGG | + | chr5_3:37997225-37997244 | Msa0810040:CDS | 30.0% | |
| AAGAGAAGGATATTAGAGAA+GGG | + | chr5_3:37997284-37997303 | Msa0810040:CDS | 30.0% | |
| !! | GTTATTTCCTGTTTCTGATT+TGG | + | chr5_3:37997306-37997325 | Msa0810040:CDS | 30.0% |
| CTTTACGATTGTTCTAACTT+GGG | + | chr5_3:37997585-37997604 | Msa0810040:intron | 30.0% | |
| ! | TACTTTTAAACCTGAGTCAA+AGG | + | chr5_3:37997938-37997957 | Msa0810040:intron | 30.0% |
| !! | TTTAGTTCTTCAACTGAATC+TGG | + | chr5_3:37998036-37998055 | Msa0810040:intron | 30.0% |
| TCATCAATTATAGCACAATG+TGG | - | chr5_3:37998254-37998273 | None:intergenic | 30.0% | |
| AATGAACCTGAGATATCTTA+GGG | - | chr5_3:37998364-37998383 | None:intergenic | 30.0% | |
| AAATGAACCTGAGATATCTT+AGG | - | chr5_3:37998365-37998384 | None:intergenic | 30.0% | |
| TGCAGCCTACATTAATTATT+TGG | + | chr5_3:37998602-37998621 | Msa0810040:intron | 30.0% | |
| GCAGCCTACATTAATTATTT+GGG | + | chr5_3:37998603-37998622 | Msa0810040:intron | 30.0% | |
| CAGCCTACATTAATTATTTG+GGG | + | chr5_3:37998604-37998623 | Msa0810040:intron | 30.0% | |
| TCTCCCCAAATAATTAATGT+AGG | - | chr5_3:37998610-37998629 | None:intergenic | 30.0% | |
| ATTTGAATCACAGGCATTTA+GGG | + | chr5_3:37998758-37998777 | Msa0810040:intron | 30.0% | |
| !! | AGTTGTTTTCCTTTCTCTTT+TGG | - | chr5_3:37998929-37998948 | None:intergenic | 30.0% |
| AAGAGAAAGGAAAACAACTA+TGG | + | chr5_3:37998930-37998949 | Msa0810040:three_prime_UTR | 30.0% | |
| !! | AGAATAAGATTTTGAGAGTC+TGG | - | chr5_3:37999044-37999063 | None:intergenic | 30.0% |
| AGAGAGGAAGAGATTAATTA+GGG | - | chr5_3:37999222-37999241 | None:intergenic | 30.0% | |
| TAGAGAGGAAGAGATTAATT+AGG | - | chr5_3:37999223-37999242 | None:intergenic | 30.0% | |
| AATCCTCTACATTTGCTTTA+TGG | - | chr5_3:37999294-37999313 | None:intergenic | 30.0% | |
| CAATTATCATTGTTAGGTGC+CGG | - | chr5_3:37996452-37996471 | None:intergenic | 35.0% | |
| ATATTTCGTCACGTGTTCAA+TGG | - | chr5_3:37996509-37996528 | None:intergenic | 35.0% | |
| CACACAGCACAAAATAAACA+TGG | + | chr5_3:37996577-37996596 | Msa0810040:five_prime_UTR | 35.0% | |
| !! | GTTGAATTTGGTTTGGAGTT+TGG | - | chr5_3:37996653-37996672 | None:intergenic | 35.0% |
| TGGTGAAGTTGAATTTGGTT+TGG | - | chr5_3:37996660-37996679 | None:intergenic | 35.0% | |
| ATGAGTGGTGAAGTTGAATT+TGG | - | chr5_3:37996665-37996684 | None:intergenic | 35.0% | |
| TTAGGTCAGTTATTGTGGAA+CGG | - | chr5_3:37996898-37996917 | None:intergenic | 35.0% | |
| !! | GTCTTTTAGGTCAGTTATTG+TGG | - | chr5_3:37996903-37996922 | None:intergenic | 35.0% |
| ! | GCATTATTGTTCCGTCTTTT+AGG | - | chr5_3:37996916-37996935 | None:intergenic | 35.0% |
| ACGGAACAATAATGCATTGT+TGG | + | chr5_3:37996921-37996940 | Msa0810040:CDS | 35.0% | |
| !! | TTTGATTCTGTTCGGGTTTT+AGG | - | chr5_3:37996950-37996969 | None:intergenic | 35.0% |
| !!! | GTTTGGTTTTGATTCTGTTC+GGG | - | chr5_3:37996957-37996976 | None:intergenic | 35.0% |
| !!! | GGTTTGGTTTTGATTCTGTT+CGG | - | chr5_3:37996958-37996977 | None:intergenic | 35.0% |
| TGAAGAGTTGTGTTAGATTG+CGG | - | chr5_3:37997036-37997055 | None:intergenic | 35.0% | |
| ACTCTTCAATGTATACGTAC+CGG | + | chr5_3:37997048-37997067 | Msa0810040:CDS | 35.0% | |
| TGAAATTCTTCCGTTCTTTC+GGG | - | chr5_3:37997109-37997128 | None:intergenic | 35.0% | |
| TAATGGAAATGAAGTGTGTG+AGG | + | chr5_3:37997149-37997168 | Msa0810040:CDS | 35.0% | |
| GTATAAAGAGTTTGTGGAGA+AGG | + | chr5_3:37997231-37997250 | Msa0810040:CDS | 35.0% | |
| GAAGAGAAGGATATTAGAGA+AGG | + | chr5_3:37997283-37997302 | Msa0810040:CDS | 35.0% | |
| ! | GGATGAAGCTGCTAATATTT+TGG | + | chr5_3:37997327-37997346 | Msa0810040:CDS | 35.0% |
| ACAAACTCCTCAAAAGCTTA+GGG | + | chr5_3:37997354-37997373 | Msa0810040:CDS | 35.0% | |
| ! | AAAAGTTCCCTAAGCTTTTG+AGG | - | chr5_3:37997364-37997383 | None:intergenic | 35.0% |
| ! | CAAAAGCTTAGGGAACTTTT+TGG | + | chr5_3:37997364-37997383 | Msa0810040:CDS | 35.0% |
| !!! | TTTTTTTCGACCACATCGTT+TGG | + | chr5_3:37997393-37997412 | Msa0810040:CDS | 35.0% |
| AAATCATGAAGGAAGCAAGA+AGG | - | chr5_3:37997427-37997446 | None:intergenic | 35.0% | |
| CCAAGTTAGAACAATCGTAA+AGG | - | chr5_3:37997587-37997606 | None:intergenic | 35.0% | |
| CCTTTACGATTGTTCTAACT+TGG | + | chr5_3:37997584-37997603 | Msa0810040:intron | 35.0% | |
| TATATCCTAAAGACCGAGTT+TGG | - | chr5_3:37997901-37997920 | None:intergenic | 35.0% | |
| AAACATGCTTCTGGATACTA+TGG | - | chr5_3:37998130-37998149 | None:intergenic | 35.0% | |
| TTAACCTACAAACATGCTTC+TGG | - | chr5_3:37998139-37998158 | None:intergenic | 35.0% | |
| AATGTGTTGTGTCTCTGTTA+TGG | + | chr5_3:37998163-37998182 | Msa0810040:intron | 35.0% | |
| ! | AAGTTTTCTGTCCTTTGCAA+TGG | - | chr5_3:37998333-37998352 | None:intergenic | 35.0% |
| ACATGATCAAGTATTCCCTT+TGG | + | chr5_3:37998630-37998649 | Msa0810040:CDS | 35.0% | |
| ACTCATTGGATTTGAATCAC+AGG | + | chr5_3:37998749-37998768 | Msa0810040:intron | 35.0% | |
| GATTTGAATCACAGGCATTT+AGG | + | chr5_3:37998757-37998776 | Msa0810040:intron | 35.0% | |
| TTTGAATCACAGGCATTTAG+GGG | + | chr5_3:37998759-37998778 | Msa0810040:intron | 35.0% | |
| CAAGATATTGTAGAACTCCT+TGG | - | chr5_3:37998842-37998861 | None:intergenic | 35.0% | |
| ATTTGAACTAGGACTTGATC+AGG | - | chr5_3:37998905-37998924 | None:intergenic | 35.0% | |
| ! | TCTCTTTTGGCATTTGAACT+AGG | - | chr5_3:37998916-37998935 | None:intergenic | 35.0% |
| GTTCAAATGCCAAAAGAGAA+AGG | + | chr5_3:37998917-37998936 | Msa0810040:three_prime_UTR | 35.0% | |
| !!! | GACGTAAGGATCTTTGTTTT+CGG | + | chr5_3:37998956-37998975 | Msa0810040:intron | 35.0% |
| GGAATGCATTGAAAAGATCT+AGG | - | chr5_3:37999019-37999038 | None:intergenic | 35.0% | |
| !! | TAAGATTTTGAGAGTCTGGA+GGG | - | chr5_3:37999040-37999059 | None:intergenic | 35.0% |
| !! | ATAAGATTTTGAGAGTCTGG+AGG | - | chr5_3:37999041-37999060 | None:intergenic | 35.0% |
| !!! | TCTGTCACTGTTTTTAGTCT+TGG | + | chr5_3:37999063-37999082 | Msa0810040:intron | 35.0% |
| AATGTGCAGATATGATAGAG+AGG | - | chr5_3:37999238-37999257 | None:intergenic | 35.0% | |
| CTGCACATTATCTCCAAAAT+TGG | + | chr5_3:37999249-37999268 | Msa0810040:intron | 35.0% | |
| !!! | TTTTTTTTTGCTTGCTGCAG+AGG | + | chr5_3:37999344-37999363 | Msa0810040:intron | 35.0% |
| !! | GGAGAGCATTCAAATACAAA+AGG | + | chr5_3:37999377-37999396 | Msa0810040:three_prime_UTR | 35.0% |
| ACCACTCATTCATTTCCAAG+TGG | + | chr5_3:37996676-37996695 | Msa0810040:five_prime_UTR | 40.0% | |
| ACCACTTGGAAATGAATGAG+TGG | - | chr5_3:37996680-37996699 | None:intergenic | 40.0% | |
| AAACACTGCGTCATACTGTT+TGG | - | chr5_3:37996818-37996837 | None:intergenic | 40.0% | |
| CCAAACCTACTCTTAATCCA+CGG | + | chr5_3:37996971-37996990 | Msa0810040:CDS | 40.0% | |
| ATGACCCTCCAAAGAAAACA+AGG | - | chr5_3:37997075-37997094 | None:intergenic | 40.0% | |
| TGAGTGTGTGATGAAGGTAA+TGG | + | chr5_3:37997132-37997151 | Msa0810040:CDS | 40.0% | |
| GGGTTTGTAGCGTATAGTTT+AGG | + | chr5_3:37997202-37997221 | Msa0810040:CDS | 40.0% | |
| ! | AAGGTTGTGATTTGTGGATC+AGG | + | chr5_3:37997250-37997269 | Msa0810040:CDS | 40.0% |
| ! | AGGTTGTGATTTGTGGATCA+GGG | + | chr5_3:37997251-37997270 | Msa0810040:CDS | 40.0% |
| GCTTCATCCAAATCAGAAAC+AGG | - | chr5_3:37997316-37997335 | None:intergenic | 40.0% | |
| !! | CTAAGCTTTTGAGGAGTTTG+TGG | - | chr5_3:37997355-37997374 | None:intergenic | 40.0% |
| CACAAACTCCTCAAAAGCTT+AGG | + | chr5_3:37997353-37997372 | Msa0810040:CDS | 40.0% | |
| ACACCTTACACACAACTATG+AGG | - | chr5_3:37997612-37997631 | None:intergenic | 40.0% | |
| GACAAAGTTACCTTTGACTC+AGG | - | chr5_3:37997951-37997970 | None:intergenic | 40.0% | |
| ! | GTATCCAGAAGCATGTTTGT+AGG | + | chr5_3:37998132-37998151 | Msa0810040:intron | 40.0% |
| AATTTGAGTAGGCTATGTGC+AGG | + | chr5_3:37998273-37998292 | Msa0810040:intron | 40.0% | |
| ATTTGAGTAGGCTATGTGCA+GGG | + | chr5_3:37998274-37998293 | Msa0810040:intron | 40.0% | |
| ATTGATCCAAGCCATTGCAA+AGG | + | chr5_3:37998319-37998338 | Msa0810040:CDS | 40.0% | |
| !! | CAAGTATTCCCTTTGGAACT+TGG | + | chr5_3:37998637-37998656 | Msa0810040:CDS | 40.0% |
| AACTTGGCCACAGATTGAAA+AGG | + | chr5_3:37998653-37998672 | Msa0810040:CDS | 40.0% | |
| ATAGTGGTGATCAAGAATGC+CGG | + | chr5_3:37998793-37998812 | Msa0810040:CDS | 40.0% | |
| ! | GCATGCATTTTGTGTGGAAA+AGG | + | chr5_3:37998816-37998835 | Msa0810040:CDS | 40.0% |
| ! | ATTTTGTGTGGAAAAGGCCA+AGG | + | chr5_3:37998822-37998841 | Msa0810040:CDS | 40.0% |
| !! | TTTGTTTTCGGTCCCTTTCA+AGG | + | chr5_3:37998968-37998987 | Msa0810040:intron | 40.0% |
| AACAGACATGAGCCTTGAAA+GGG | - | chr5_3:37998983-37999002 | None:intergenic | 40.0% | |
| AAACAGACATGAGCCTTGAA+AGG | - | chr5_3:37998984-37999003 | None:intergenic | 40.0% | |
| !! | CGATCCCCATAGTTGTTTTA+CGG | + | chr5_3:37999159-37999178 | Msa0810040:intron | 40.0% |
| !! | GATCCCCATAGTTGTTTTAC+GGG | + | chr5_3:37999160-37999179 | Msa0810040:intron | 40.0% |
| GATCCCGTAAAACAACTATG+GGG | - | chr5_3:37999166-37999185 | None:intergenic | 40.0% | |
| GGATCCCGTAAAACAACTAT+GGG | - | chr5_3:37999167-37999186 | None:intergenic | 40.0% | |
| TGGATCCCGTAAAACAACTA+TGG | - | chr5_3:37999168-37999187 | None:intergenic | 40.0% | |
| !! | GGATCCATTTTTGCAAGTGT+AGG | + | chr5_3:37999181-37999200 | Msa0810040:intron | 40.0% |
| !! | CCATTTTTGCAAGTGTAGGA+CGG | + | chr5_3:37999185-37999204 | Msa0810040:intron | 40.0% |
| ! | CATTTTTGCAAGTGTAGGAC+GGG | + | chr5_3:37999186-37999205 | Msa0810040:intron | 40.0% |
| ! | ATTTTTGCAAGTGTAGGACG+GGG | + | chr5_3:37999187-37999206 | Msa0810040:intron | 40.0% |
| TCTCCAAAATTGGACCCTTT+AGG | + | chr5_3:37999259-37999278 | Msa0810040:intron | 40.0% | |
| CTCCAAAATTGGACCCTTTA+GGG | + | chr5_3:37999260-37999279 | Msa0810040:intron | 40.0% | |
| GCACCATAAAGCAAATGTAG+AGG | + | chr5_3:37999288-37999307 | Msa0810040:intron | 40.0% | |
| CCATTGTGTCCATAGAAGAC+CGG | + | chr5_3:37996430-37996449 | Msa0810040:five_prime_UTR | 45.0% | |
| GTGCTGTGTGAAAGAGAGAT+TGG | - | chr5_3:37996567-37996586 | None:intergenic | 45.0% | |
| CAAAATAAACATGGCCACGC+AGG | + | chr5_3:37996586-37996605 | Msa0810040:five_prime_UTR | 45.0% | |
| TGCTACCGATCAACATTCAC+CGG | + | chr5_3:37996863-37996882 | Msa0810040:CDS | 45.0% | |
| ! | CCGTGGATTAAGAGTAGGTT+TGG | - | chr5_3:37996974-37996993 | None:intergenic | 45.0% |
| CGCCAATGCTTTATGGCAAT+GGG | + | chr5_3:37997000-37997019 | Msa0810040:CDS | 45.0% | |
| GCCAATGCTTTATGGCAATG+GGG | + | chr5_3:37997001-37997020 | Msa0810040:CDS | 45.0% | |
| ACCCCATTGCCATAAAGCAT+TGG | - | chr5_3:37997005-37997024 | None:intergenic | 45.0% | |
| GTTGTGTTAGATTGCGGATG+AGG | - | chr5_3:37997030-37997049 | None:intergenic | 45.0% | |
| !!! | GTACCGGACCTTGTTTTCTT+TGG | + | chr5_3:37997064-37997083 | Msa0810040:CDS | 45.0% |
| CCTCCAAAGAAAACAAGGTC+CGG | - | chr5_3:37997070-37997089 | None:intergenic | 45.0% | |
| !!! | CGGACCTTGTTTTCTTTGGA+GGG | + | chr5_3:37997068-37997087 | Msa0810040:CDS | 45.0% |
| TCAAGCTGAGTGTGTGATGA+AGG | + | chr5_3:37997126-37997145 | Msa0810040:CDS | 45.0% | |
| ! | TGTGAGGAATGTGAGTGTTG+TGG | + | chr5_3:37997165-37997184 | Msa0810040:CDS | 45.0% |
| ! | GTGAGGAATGTGAGTGTTGT+GGG | + | chr5_3:37997166-37997185 | Msa0810040:CDS | 45.0% |
| ! | TGAGGAATGTGAGTGTTGTG+GGG | + | chr5_3:37997167-37997186 | Msa0810040:CDS | 45.0% |
| AGTGTTGTGGGGTTGAGTTA+TGG | + | chr5_3:37997178-37997197 | Msa0810040:CDS | 45.0% | |
| TTGTGGGGTTGAGTTATGGT+GGG | + | chr5_3:37997182-37997201 | Msa0810040:CDS | 45.0% | |
| GTGGAGAAGGTTGTGATTTG+TGG | + | chr5_3:37997244-37997263 | Msa0810040:CDS | 45.0% | |
| ! | GGTTGTGATTTGTGGATCAG+GGG | + | chr5_3:37997252-37997271 | Msa0810040:CDS | 45.0% |
| GGACCTCATAGTTGTGTGTA+AGG | + | chr5_3:37997606-37997625 | Msa0810040:intron | 45.0% | |
| GGAGTATGCTTCTCCAAACT+CGG | + | chr5_3:37997885-37997904 | Msa0810040:intron | 45.0% | |
| CTTCTCCAAACTCGGTCTTT+AGG | + | chr5_3:37997893-37997912 | Msa0810040:intron | 45.0% | |
| TTCTGTCCTTTGCAATGGCT+TGG | - | chr5_3:37998328-37998347 | None:intergenic | 45.0% | |
| TGACCTCCCTAAGATATCTC+AGG | + | chr5_3:37998355-37998374 | Msa0810040:CDS | 45.0% | |
| GAACCTGAGATATCTTAGGG+AGG | - | chr5_3:37998361-37998380 | None:intergenic | 45.0% | |
| CATAAACACGTGTCAGACAC+TGG | + | chr5_3:37998479-37998498 | Msa0810040:intron | 45.0% | |
| ATCTGTGGCCAAGTTCCAAA+GGG | - | chr5_3:37998648-37998667 | None:intergenic | 45.0% | |
| AATCTGTGGCCAAGTTCCAA+AGG | - | chr5_3:37998649-37998668 | None:intergenic | 45.0% | |
| AGGGGACAATGCTCAAATAG+TGG | + | chr5_3:37998777-37998796 | Msa0810040:CDS | 45.0% | |
| TAGTGGTGATCAAGAATGCC+GGG | + | chr5_3:37998794-37998813 | Msa0810040:CDS | 45.0% | |
| TTCCACACAAAATGCATGCC+CGG | - | chr5_3:37998815-37998834 | None:intergenic | 45.0% | |
| CCGTCCTACACTTGCAAAAA+TGG | - | chr5_3:37999188-37999207 | None:intergenic | 45.0% | |
| ! | AGCCCTAAAGGGTCCAATTT+TGG | - | chr5_3:37999265-37999284 | None:intergenic | 45.0% |
| CCGGTCTTCTATGGACACAA+TGG | - | chr5_3:37996433-37996452 | None:intergenic | 50.0% | |
| !! | TGTTAGGTGCCGGTCTTCTA+TGG | - | chr5_3:37996442-37996461 | None:intergenic | 50.0% |
| ! | CTGCACCGGTGAATGTTGAT+CGG | - | chr5_3:37996871-37996890 | None:intergenic | 50.0% |
| CTACTCTTAATCCACGGCCT+CGG | + | chr5_3:37996977-37996996 | Msa0810040:CDS | 50.0% | |
| GCGCCAATGCTTTATGGCAA+TGG | + | chr5_3:37996999-37997018 | Msa0810040:CDS | 50.0% | |
| !!! | CCGGACCTTGTTTTCTTTGG+AGG | + | chr5_3:37997067-37997086 | Msa0810040:CDS | 50.0% |
| GTTGTGGGGTTGAGTTATGG+TGG | + | chr5_3:37997181-37997200 | Msa0810040:CDS | 50.0% | |
| TTGTGGATCAGGGGTGAGTT+TGG | + | chr5_3:37997261-37997280 | Msa0810040:CDS | 50.0% | |
| AGGGGTGAGTTTGGAAGAGA+AGG | + | chr5_3:37997270-37997289 | Msa0810040:CDS | 50.0% | |
| TTCGACCACATCGTTTGGCT+TGG | + | chr5_3:37997398-37997417 | Msa0810040:CDS | 50.0% | |
| AACAACTATGGCGCGACGTA+AGG | + | chr5_3:37998942-37998961 | Msa0810040:intron | 50.0% | |
| CTGTGTGGTGCAGTAGTTGT+GGG | + | chr5_3:37999100-37999119 | Msa0810040:intron | 50.0% | |
| TGTGTGGTGCAGTAGTTGTG+GGG | + | chr5_3:37999101-37999120 | Msa0810040:intron | 50.0% | |
| TATGGTGCAGCAGCCCTAAA+GGG | - | chr5_3:37999276-37999295 | None:intergenic | 50.0% | |
| TTATGGTGCAGCAGCCCTAA+AGG | - | chr5_3:37999277-37999296 | None:intergenic | 50.0% | |
| ! | TGCTTGCTGCAGAGGTAGAA+TGG | + | chr5_3:37999352-37999371 | Msa0810040:intron | 50.0% |
| TGCTGCAGAGGTAGAATGGT+AGG | + | chr5_3:37999356-37999375 | Msa0810040:intron | 50.0% | |
| CGATCAACATTCACCGGTGC+AGG | + | chr5_3:37996869-37996888 | Msa0810040:CDS | 55.0% | |
| ! | CGAGGCCGTGGATTAAGAGT+AGG | - | chr5_3:37996979-37996998 | None:intergenic | 55.0% |
| CACGTCTCGACCCGAAAGAA+CGG | + | chr5_3:37997096-37997115 | Msa0810040:CDS | 55.0% | |
| GGCAACCAAGCCAAACGATG+TGG | - | chr5_3:37997406-37997425 | None:intergenic | 55.0% | |
| ! | TGCCGGGCATGCATTTTGTG+TGG | + | chr5_3:37998810-37998829 | Msa0810040:CDS | 55.0% |
| TGCACCACACAGCTGCTGTA+GGG | - | chr5_3:37999092-37999111 | None:intergenic | 55.0% | |
| GCTGTGTGGTGCAGTAGTTG+TGG | + | chr5_3:37999099-37999118 | Msa0810040:intron | 55.0% | |
| TGTGGAACGGAGACCTGCAC+CGG | - | chr5_3:37996885-37996904 | None:intergenic | 60.0% | |
| GCCTCGGCGCCAATGCTTTA+TGG | + | chr5_3:37996993-37997012 | Msa0810040:CDS | 60.0% | |
| !! | GCCATAAAGCATTGGCGCCG+AGG | - | chr5_3:37996997-37997016 | None:intergenic | 60.0% |
| GATCCCCTACAGCAGCTGTG+TGG | + | chr5_3:37999085-37999104 | Msa0810040:intron | 60.0% | |
| GCACCACACAGCTGCTGTAG+GGG | - | chr5_3:37999091-37999110 | None:intergenic | 60.0% | |
| CTGCACCACACAGCTGCTGT+AGG | - | chr5_3:37999093-37999112 | None:intergenic | 60.0% | |
| !! | AAGCATTGGCGCCGAGGCCG+TGG | - | chr5_3:37996991-37997010 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 37996306 | 37999512 | 37996306 | ID=Msa0810040;Name=Msa0810040 |
| chr5_3 | mRNA | 37996306 | 37999512 | 37996306 | ID=Msa0810040-mRNA-1;Parent=Msa0810040;Name=Msa0810040-mRNA-1;_AED=0.17;_eAED=0.17;_QI=486|1|1|1|0.6|0.33|6|216|303 |
| chr5_3 | exon | 37996306 | 37996337 | 37996306 | ID=Msa0810040-mRNA-1:exon:11631;Parent=Msa0810040-mRNA-1 |
| chr5_3 | exon | 37996370 | 37997453 | 37996370 | ID=Msa0810040-mRNA-1:exon:11632;Parent=Msa0810040-mRNA-1 |
| chr5_3 | exon | 37998284 | 37998376 | 37998284 | ID=Msa0810040-mRNA-1:exon:11633;Parent=Msa0810040-mRNA-1 |
| chr5_3 | exon | 37998607 | 37998674 | 37998607 | ID=Msa0810040-mRNA-1:exon:11634;Parent=Msa0810040-mRNA-1 |
| chr5_3 | exon | 37998771 | 37998958 | 37998771 | ID=Msa0810040-mRNA-1:exon:11635;Parent=Msa0810040-mRNA-1 |
| chr5_3 | exon | 37999364 | 37999512 | 37999364 | ID=Msa0810040-mRNA-1:exon:11636;Parent=Msa0810040-mRNA-1 |
| chr5_3 | five_prime_UTR | 37996306 | 37996337 | 37996306 | ID=Msa0810040-mRNA-1:five_prime_utr;Parent=Msa0810040-mRNA-1 |
| chr5_3 | five_prime_UTR | 37996370 | 37996823 | 37996370 | ID=Msa0810040-mRNA-1:five_prime_utr;Parent=Msa0810040-mRNA-1 |
| chr5_3 | CDS | 37996824 | 37997453 | 37996824 | ID=Msa0810040-mRNA-1:cds;Parent=Msa0810040-mRNA-1 |
| chr5_3 | CDS | 37998284 | 37998376 | 37998284 | ID=Msa0810040-mRNA-1:cds;Parent=Msa0810040-mRNA-1 |
| chr5_3 | CDS | 37998607 | 37998674 | 37998607 | ID=Msa0810040-mRNA-1:cds;Parent=Msa0810040-mRNA-1 |
| chr5_3 | CDS | 37998771 | 37998891 | 37998771 | ID=Msa0810040-mRNA-1:cds;Parent=Msa0810040-mRNA-1 |
| chr5_3 | three_prime_UTR | 37998892 | 37998958 | 37998892 | ID=Msa0810040-mRNA-1:three_prime_utr;Parent=Msa0810040-mRNA-1 |
| chr5_3 | three_prime_UTR | 37999364 | 37999512 | 37999364 | ID=Msa0810040-mRNA-1:three_prime_utr;Parent=Msa0810040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
