AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1355260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1355260 MtrunA17_Chr3g0115591 90.560 339 18 2 1 339 1 325 0.0 631
Msa1355260 MtrunA17_Chr5g0425421 62.500 320 104 2 1 320 1 304 2.25e-145 413
Msa1355260 MtrunA17_Chr7g0254621 41.497 294 155 2 23 316 18 294 1.95e-86 263
Msa1355260 MtrunA17_Chr8g0373391 45.693 267 131 2 18 283 12 265 1.52e-81 249
Msa1355260 MtrunA17_Chr1g0155071 41.699 259 137 2 26 283 20 265 3.01e-73 228
Msa1355260 MtrunA17_Chr8g0385691 28.333 240 154 7 20 257 19 242 7.87e-21 90.1
Msa1355260 MtrunA17_Chr4g0058791 25.434 173 114 2 52 222 72 231 2.47e-19 85.9
Msa1355260 MtrunA17_Chr4g0058811 27.059 170 109 3 55 222 77 233 1.43e-18 84.0
Msa1355260 MtrunA17_Chr8g0385681 27.917 240 153 8 21 257 23 245 2.57e-18 83.2
Msa1355260 MtrunA17_Chr3g0131581 26.360 239 156 9 22 257 41 262 3.01e-17 80.5
Msa1355260 MtrunA17_Chr1g0205531 27.103 214 136 4 21 228 8 207 3.37e-16 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1355260 AT4G08690.2 50.000 270 119 2 9 278 6 259 3.93e-100 298
Msa1355260 AT4G08690.1 50.000 270 119 2 9 278 6 259 3.93e-100 298
Msa1355260 AT4G08690.3 50.000 270 119 2 9 278 6 259 3.93e-100 298
Msa1355260 AT1G22180.2 49.342 304 126 6 12 314 12 288 5.16e-98 293
Msa1355260 AT1G22180.4 49.342 304 126 6 12 314 12 288 5.16e-98 293
Msa1355260 AT1G22180.3 49.393 247 100 5 69 314 1 223 9.95e-80 244
Msa1355260 AT1G22180.1 49.393 247 100 5 69 314 1 223 9.95e-80 244
Msa1355260 AT1G75170.2 40.590 271 147 2 25 294 20 277 2.88e-75 234
Msa1355260 AT1G75170.1 40.590 271 147 2 25 294 20 277 2.88e-75 234
Msa1355260 AT4G36640.1 39.286 280 156 2 24 302 16 282 7.51e-72 225
Msa1355260 AT4G36640.3 39.286 280 156 2 24 302 16 282 7.51e-72 225
Msa1355260 AT4G36640.2 38.298 235 131 2 69 302 1 222 1.75e-55 181
Msa1355260 AT1G75170.3 38.860 193 117 1 103 294 2 194 1.21e-47 160
Msa1355260 AT5G63060.2 27.907 172 109 2 52 221 40 198 2.88e-18 82.8
Msa1355260 AT5G63060.1 27.811 169 107 2 55 221 78 233 3.12e-18 83.6
Msa1355260 AT1G01630.1 26.070 257 172 7 3 257 5 245 4.00e-18 83.2
Msa1355260 AT1G05370.1 25.521 192 127 3 39 228 32 209 2.29e-12 67.8
Msa1355260 AT3G22410.1 26.923 208 135 4 24 228 6 199 2.93e-11 64.7

Find 85 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATTCCTGTCTCCATTTA+AGG 0.158580 tig0014622:+15414 None:intergenic
GGTATTTAAAATCACAAAAT+TGG 0.173573 tig0014622:-15472 Msa1355260:CDS
CCATCCTTGGCACAATAATT+TGG 0.174530 tig0014622:+15098 None:intergenic
CCATAATCTTCTTTGTGTTT+TGG 0.230567 tig0014622:+14462 None:intergenic
TATGGAGGGTTTATTTGATA+TGG 0.234312 tig0014622:-14444 Msa1355260:CDS
TTAACACAGTTTAATTAATT+AGG 0.261578 tig0014622:+16084 None:intergenic
GTAGCAAGCTTGAAGGCTTT+TGG 0.270886 tig0014622:-13996 Msa1355260:three_prime_UTR
ATAACAAGATGCACTCCTTT+TGG 0.282527 tig0014622:-14340 Msa1355260:CDS
CTTTATCTTATTATAATTCT+CGG 0.306203 tig0014622:+14502 None:intergenic
CTTACCCAGGTAATCTCTTC+AGG 0.306944 tig0014622:+15389 None:intergenic
CCAAAACACAAAGAAGATTA+TGG 0.309315 tig0014622:-14462 Msa1355260:CDS
GTTTGGTTCTCTCAAAAGTT+TGG 0.315765 tig0014622:-15967 Msa1355260:five_prime_UTR
GAGATATATTGATCAGGTTT+AGG 0.320441 tig0014622:+14203 None:intergenic
CTCACCAGGAGCAGGTGATC+TGG 0.345435 tig0014622:-14855 Msa1355260:CDS
TATATCTCTTAAATTCAGTT+TGG 0.368340 tig0014622:-15984 Msa1355260:five_prime_UTR
TTACCTTGTAGCAAGCTTGA+AGG 0.401442 tig0014622:-14003 Msa1355260:three_prime_UTR
TTTGTTCTCATTATAAGTAC+TGG 0.403459 tig0014622:+15071 None:intergenic
GTTCTGATGCATCCATTTCA+AGG 0.412879 tig0014622:-15493 Msa1355260:CDS
CAGAGACAGGGAAAATGTTT+AGG 0.428866 tig0014622:-15121 Msa1355260:CDS
ATCTGGCTGGTTGATTTCCA+TGG 0.440350 tig0014622:-14838 Msa1355260:CDS
ACCTTTAGCAACACTGATGC+AGG 0.444132 tig0014622:+15940 None:intergenic
GATCAACTTGAACCTGCATT+TGG 0.447521 tig0014622:-14422 Msa1355260:CDS
TAATTAATTAAACTGTGTTA+AGG 0.451523 tig0014622:-16082 Msa1355260:five_prime_UTR
AAGTACTGGCCTTCCATCCT+TGG 0.462466 tig0014622:+15085 None:intergenic
AGATCACCTGCTCCTGGTGA+GGG 0.468118 tig0014622:+14857 None:intergenic
CAGATCACCTGCTCCTGGTG+AGG 0.469356 tig0014622:+14856 None:intergenic
GTTGCTAATGAAGCAGAGAC+AGG 0.477872 tig0014622:-15134 Msa1355260:CDS
ATGAGCTATGATATTCTAGT+TGG 0.479772 tig0014622:-14089 Msa1355260:three_prime_UTR
TATTTCGTTACCGAGAAGAA+TGG 0.481590 tig0014622:+14697 None:intergenic
ATTGAGGTGAGAAAGTTGAT+AGG 0.483915 tig0014622:-15545 Msa1355260:CDS
CAAAGTGGTTATAAAATGAA+TGG 0.485251 tig0014622:-16036 Msa1355260:five_prime_UTR
ATATCATATCTCTTAAGTCT+AGG 0.498425 tig0014622:+14063 None:intergenic
AACAACATAAATCCAACATA+AGG 0.498756 tig0014622:+14037 None:intergenic
CCAAATTATTGTGCCAAGGA+TGG 0.499730 tig0014622:-15098 Msa1355260:CDS
GTAACTGAGATATATTGATC+AGG 0.500083 tig0014622:+14197 None:intergenic
CCAGGAGCAGGTGATCTGGC+TGG 0.500834 tig0014622:-14851 Msa1355260:CDS
TCATTATTCCCACCAAATGC+AGG 0.506468 tig0014622:+14410 None:intergenic
CAACTTGAACCTGCATTTGG+TGG 0.510649 tig0014622:-14419 Msa1355260:CDS
GTCACTATCACAAGAACAGC+AGG 0.515426 tig0014622:-15679 Msa1355260:CDS
AGAGTTTGCATGTGTCCAAA+AGG 0.518082 tig0014622:+14325 None:intergenic
CTGAAGAAAACTGCCTCTGA+TGG 0.531528 tig0014622:-15723 Msa1355260:CDS
TTCCTCCTTCAGATTTGACC+AGG 0.531700 tig0014622:-14280 Msa1355260:CDS
CACTTGACAAACTGAAACCA+TGG 0.532083 tig0014622:+14821 None:intergenic
CCAGCCAGATCACCTGCTCC+TGG 0.532714 tig0014622:+14851 None:intergenic
ATAAACCTGAAGAGATTACC+TGG 0.535260 tig0014622:-15394 Msa1355260:CDS
GAAGAATGGTTGGAAAATCC+CGG 0.535429 tig0014622:+14711 None:intergenic
TTATCCACAGCGCCTCGGAT+TGG 0.536069 tig0014622:-14752 Msa1355260:CDS
GATAGGAACATTATCAGATA+AGG 0.538137 tig0014622:-15528 Msa1355260:CDS
ATATGATATAAACCTTATGT+TGG 0.538419 tig0014622:-14049 Msa1355260:three_prime_UTR
GCCTGCATCAGTGTTGCTAA+AGG 0.544160 tig0014622:-15941 Msa1355260:intron
ATCACCTGCTCCTGGTGAGG+GGG 0.548989 tig0014622:+14859 None:intergenic
ATATGCTAAGAGAATGAGAG+AGG 0.549993 tig0014622:-14366 Msa1355260:CDS
AACTTGAACCTGCATTTGGT+GGG 0.550189 tig0014622:-14418 Msa1355260:CDS
TATAATGAGAACAAATCGCC+AGG 0.555150 tig0014622:-15063 Msa1355260:intron
AATATATCTCAGTTACTCGC+GGG 0.560385 tig0014622:-14190 Msa1355260:CDS
TCAGATTGAATTTAAAGATG+AGG 0.564648 tig0014622:-15284 Msa1355260:intron
ATCAGAATCTGCTACTAACC+TGG 0.564891 tig0014622:+14262 None:intergenic
TAGGCCAAATTATTGTGCCA+AGG 0.566490 tig0014622:-15102 Msa1355260:CDS
TGTTGCATTCCAGATCATTG+AGG 0.566777 tig0014622:-15561 Msa1355260:intron
AAGCCTTCAAGCTTGCTACA+AGG 0.571287 tig0014622:+14000 None:intergenic
ATTATTGTGCCAAGGATGGA+AGG 0.571441 tig0014622:-15094 Msa1355260:CDS
GATCACCTGCTCCTGGTGAG+GGG 0.576919 tig0014622:+14858 None:intergenic
GCAATCATGTATGATGCACC+CGG 0.576986 tig0014622:-14730 Msa1355260:CDS
AAATATTATCCACAGCGCCT+CGG 0.585906 tig0014622:-14757 Msa1355260:CDS
TCGTTACCGAGAAGAATGGT+TGG 0.590066 tig0014622:+14701 None:intergenic
AACACAAAGAAGATTATGGA+GGG 0.591841 tig0014622:-14458 Msa1355260:CDS
ATCACAAGAACAGCAGGCTA+AGG 0.594560 tig0014622:-15673 Msa1355260:intron
ACATTGTGTGAGACTGATGA+TGG 0.595579 tig0014622:+14302 None:intergenic
AAGAATGGTTGGAAAATCCC+GGG 0.597907 tig0014622:+14712 None:intergenic
ACTAACCTGGTCAAATCTGA+AGG 0.603314 tig0014622:+14275 None:intergenic
AAACACAAAGAAGATTATGG+AGG 0.618726 tig0014622:-14459 Msa1355260:CDS
TCGCGGGGACACAAAGGTCA+TGG 0.619216 tig0014622:-14174 Msa1355260:CDS
CAATATATCTCAGTTACTCG+CGG 0.625172 tig0014622:-14191 Msa1355260:CDS
TGAATTGTTGCAGATGGTGA+GGG 0.625659 tig0014622:-14537 Msa1355260:intron
TGTTCTTGTGATAGTGACAC+TGG 0.627385 tig0014622:+15684 None:intergenic
ATGAATTGTTGCAGATGGTG+AGG 0.628754 tig0014622:-14538 Msa1355260:intron
GTAATAAGTAATAACCAAAG+TGG 0.630082 tig0014622:-16051 Msa1355260:five_prime_UTR
ATTGCCAATCCGAGGCGCTG+TGG 0.630157 tig0014622:+14748 None:intergenic
AGTTACTCGCGGGGACACAA+AGG 0.631514 tig0014622:-14180 Msa1355260:CDS
CATACATGATTGCCAATCCG+AGG 0.632178 tig0014622:+14740 None:intergenic
AACCTGGTCAAATCTGAAGG+AGG 0.655670 tig0014622:+14278 None:intergenic
TTGCTAATGAAGCAGAGACA+GGG 0.659274 tig0014622:-15133 Msa1355260:CDS
CAATCATGTATGATGCACCC+GGG 0.666450 tig0014622:-14729 Msa1355260:CDS
TAAACCTGAAGAGATTACCT+GGG 0.681766 tig0014622:-15393 Msa1355260:intron
ATATATCTCAGTTACTCGCG+GGG 0.688008 tig0014622:-14189 Msa1355260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATTTTGAATAAAAATG+AGG - tig0014622:14202-14221 Msa1355260:CDS 10.0%
!!! TGAATGATATATATATTTTA+AGG - tig0014622:14820-14839 Msa1355260:CDS 10.0%
!!! GATAATATTTTTGTAATATA+TGG + tig0014622:15288-15307 None:intergenic 10.0%
!!! ATTTAAATATCAACATTTTA+CGG + tig0014622:15436-15455 None:intergenic 10.0%
!!! TATGTCTTTATTTATTTTAA+AGG + tig0014622:16085-16104 None:intergenic 10.0%
!!! AATTATTTTGAATAAAAATG+AGG - tig0014622:14202-14221 Msa1355260:CDS 10.0%
!!! TGAATGATATATATATTTTA+AGG - tig0014622:14820-14839 Msa1355260:CDS 10.0%
!!! GATAATATTTTTGTAATATA+TGG + tig0014622:15288-15307 None:intergenic 10.0%
!!! ATTTAAATATCAACATTTTA+CGG + tig0014622:15436-15455 None:intergenic 10.0%
!!! TATGTCTTTATTTATTTTAA+AGG + tig0014622:16085-16104 None:intergenic 10.0%
!! TTAACACAGTTTAATTAATT+AGG + tig0014622:13974-13993 None:intergenic 15.0%
!! TAATTAATTAAACTGTGTTA+AGG - tig0014622:13973-13992 Msa1355260:three_prime_UTR 15.0%
!!! TTAAGAGATATATTTTAGTT+TGG + tig0014622:14063-14082 None:intergenic 15.0%
!! CTTTATCTTATTATAATTCT+CGG + tig0014622:15556-15575 None:intergenic 15.0%
!! TTAACACAGTTTAATTAATT+AGG + tig0014622:13974-13993 None:intergenic 15.0%
!! TAATTAATTAAACTGTGTTA+AGG - tig0014622:13973-13992 Msa1355260:three_prime_UTR 15.0%
!!! TTAAGAGATATATTTTAGTT+TGG + tig0014622:14063-14082 None:intergenic 15.0%
!! CTTTATCTTATTATAATTCT+CGG + tig0014622:15556-15575 None:intergenic 15.0%
!! TATATCTCTTAAATTCAGTT+TGG - tig0014622:14071-14090 Msa1355260:three_prime_UTR 20.0%
!!! TGATTTTAAATACCTTGAAA+TGG + tig0014622:14577-14596 None:intergenic 20.0%
!!! GGTATTTAAAATCACAAAAT+TGG - tig0014622:14583-14602 Msa1355260:intron 20.0%
!!! ATTTTAAGGATTTAAAGATG+AGG - tig0014622:14834-14853 Msa1355260:CDS 20.0%
!! ATATGATATAAACCTTATGT+TGG - tig0014622:16006-16025 Msa1355260:five_prime_UTR 20.0%
!! TATATCTCTTAAATTCAGTT+TGG - tig0014622:14071-14090 Msa1355260:three_prime_UTR 20.0%
!!! TGATTTTAAATACCTTGAAA+TGG + tig0014622:14577-14596 None:intergenic 20.0%
!!! GGTATTTAAAATCACAAAAT+TGG - tig0014622:14583-14602 Msa1355260:intron 20.0%
!!! ATTTTAAGGATTTAAAGATG+AGG - tig0014622:14834-14853 Msa1355260:CDS 20.0%
!! ATATGATATAAACCTTATGT+TGG - tig0014622:16006-16025 Msa1355260:five_prime_UTR 20.0%
! GTAATAAGTAATAACCAAAG+TGG - tig0014622:14004-14023 Msa1355260:three_prime_UTR 25.0%
!! CATTCATTTTATAACCACTT+TGG + tig0014622:14021-14040 None:intergenic 25.0%
! CAAAGTGGTTATAAAATGAA+TGG - tig0014622:14019-14038 Msa1355260:three_prime_UTR 25.0%
! TACAAACCATAATCATATCT+AGG + tig0014622:14144-14163 None:intergenic 25.0%
! ATGTCCAATAATTGAAATCT+TGG - tig0014622:14406-14425 Msa1355260:CDS 25.0%
!!! AATATTTTGAGTGAAGAATG+AGG - tig0014622:14451-14470 Msa1355260:CDS 25.0%
! TGTTGAAAAAAAGCCTTAAA+TGG - tig0014622:14628-14647 Msa1355260:intron 25.0%
! AACAAAGCCTAAAATTGTTA+TGG - tig0014622:14731-14750 Msa1355260:CDS 25.0%
! TCAGATTGAATTTAAAGATG+AGG - tig0014622:14771-14790 Msa1355260:CDS 25.0%
!!! TTAACGAGTATGTTTTTTCT+TGG - tig0014622:14887-14906 Msa1355260:CDS 25.0%
!!! AGTATGTTTTTTCTTGGTTA+AGG - tig0014622:14893-14912 Msa1355260:CDS 25.0%
! TTTGTTCTCATTATAAGTAC+TGG + tig0014622:14987-15006 None:intergenic 25.0%
!!! TTTTTTTTTACAGCAGAAGT+TGG - tig0014622:15408-15427 Msa1355260:CDS 25.0%
! AGAACATTGATCAAACTTAT+CGG + tig0014622:15473-15492 None:intergenic 25.0%
! ATATCATATCTCTTAAGTCT+AGG + tig0014622:15995-16014 None:intergenic 25.0%
! AACAACATAAATCCAACATA+AGG + tig0014622:16021-16040 None:intergenic 25.0%
! GTAATAAGTAATAACCAAAG+TGG - tig0014622:14004-14023 Msa1355260:three_prime_UTR 25.0%
!! CATTCATTTTATAACCACTT+TGG + tig0014622:14021-14040 None:intergenic 25.0%
! CAAAGTGGTTATAAAATGAA+TGG - tig0014622:14019-14038 Msa1355260:three_prime_UTR 25.0%
! TACAAACCATAATCATATCT+AGG + tig0014622:14144-14163 None:intergenic 25.0%
! ATGTCCAATAATTGAAATCT+TGG - tig0014622:14406-14425 Msa1355260:CDS 25.0%
!!! AATATTTTGAGTGAAGAATG+AGG - tig0014622:14451-14470 Msa1355260:CDS 25.0%
! TGTTGAAAAAAAGCCTTAAA+TGG - tig0014622:14628-14647 Msa1355260:intron 25.0%
! AACAAAGCCTAAAATTGTTA+TGG - tig0014622:14731-14750 Msa1355260:CDS 25.0%
! TCAGATTGAATTTAAAGATG+AGG - tig0014622:14771-14790 Msa1355260:CDS 25.0%
!!! TTAACGAGTATGTTTTTTCT+TGG - tig0014622:14887-14906 Msa1355260:CDS 25.0%
!!! AGTATGTTTTTTCTTGGTTA+AGG - tig0014622:14893-14912 Msa1355260:CDS 25.0%
! TTTGTTCTCATTATAAGTAC+TGG + tig0014622:14987-15006 None:intergenic 25.0%
!!! TTTTTTTTTACAGCAGAAGT+TGG - tig0014622:15408-15427 Msa1355260:CDS 25.0%
! AGAACATTGATCAAACTTAT+CGG + tig0014622:15473-15492 None:intergenic 25.0%
! ATATCATATCTCTTAAGTCT+AGG + tig0014622:15995-16014 None:intergenic 25.0%
! AACAACATAAATCCAACATA+AGG + tig0014622:16021-16040 None:intergenic 25.0%
GGTAAACCTAGATATGATTA+TGG - tig0014622:14135-14154 Msa1355260:three_prime_UTR 30.0%
TGCTCCAAGATTTCAATTAT+TGG + tig0014622:14413-14432 None:intergenic 30.0%
GATAGGAACATTATCAGATA+AGG - tig0014622:14527-14546 Msa1355260:CDS 30.0%
TATATTCCTGTCTCCATTTA+AGG + tig0014622:14644-14663 None:intergenic 30.0%
! AACACAGCCATAACAATTTT+AGG + tig0014622:14741-14760 None:intergenic 30.0%
!! TAAGCATTTTGTTTACTGCA+TGG - tig0014622:15153-15172 Msa1355260:intron 30.0%
AAAGAATGAATTGTTGCAGA+TGG - tig0014622:15512-15531 Msa1355260:CDS 30.0%
! CCATAATCTTCTTTGTGTTT+TGG + tig0014622:15596-15615 None:intergenic 30.0%
CCAAAACACAAAGAAGATTA+TGG - tig0014622:15593-15612 Msa1355260:intron 30.0%
AAACACAAAGAAGATTATGG+AGG - tig0014622:15596-15615 Msa1355260:intron 30.0%
AACACAAAGAAGATTATGGA+GGG - tig0014622:15597-15616 Msa1355260:intron 30.0%
TATGGAGGGTTTATTTGATA+TGG - tig0014622:15611-15630 Msa1355260:intron 30.0%
! ATCAACTATTTTCTCGTTGT+TGG + tig0014622:15823-15842 None:intergenic 30.0%
GAGATATATTGATCAGGTTT+AGG + tig0014622:15855-15874 None:intergenic 30.0%
GTAACTGAGATATATTGATC+AGG + tig0014622:15861-15880 None:intergenic 30.0%
ATGAGCTATGATATTCTAGT+TGG - tig0014622:15966-15985 Msa1355260:five_prime_UTR 30.0%
GGTAAACCTAGATATGATTA+TGG - tig0014622:14135-14154 Msa1355260:three_prime_UTR 30.0%
TGCTCCAAGATTTCAATTAT+TGG + tig0014622:14413-14432 None:intergenic 30.0%
GATAGGAACATTATCAGATA+AGG - tig0014622:14527-14546 Msa1355260:CDS 30.0%
TATATTCCTGTCTCCATTTA+AGG + tig0014622:14644-14663 None:intergenic 30.0%
! AACACAGCCATAACAATTTT+AGG + tig0014622:14741-14760 None:intergenic 30.0%
!! TAAGCATTTTGTTTACTGCA+TGG - tig0014622:15153-15172 Msa1355260:intron 30.0%
AAAGAATGAATTGTTGCAGA+TGG - tig0014622:15512-15531 Msa1355260:CDS 30.0%
! CCATAATCTTCTTTGTGTTT+TGG + tig0014622:15596-15615 None:intergenic 30.0%
CCAAAACACAAAGAAGATTA+TGG - tig0014622:15593-15612 Msa1355260:intron 30.0%
AAACACAAAGAAGATTATGG+AGG - tig0014622:15596-15615 Msa1355260:intron 30.0%
AACACAAAGAAGATTATGGA+GGG - tig0014622:15597-15616 Msa1355260:intron 30.0%
TATGGAGGGTTTATTTGATA+TGG - tig0014622:15611-15630 Msa1355260:intron 30.0%
! ATCAACTATTTTCTCGTTGT+TGG + tig0014622:15823-15842 None:intergenic 30.0%
GAGATATATTGATCAGGTTT+AGG + tig0014622:15855-15874 None:intergenic 30.0%
GTAACTGAGATATATTGATC+AGG + tig0014622:15861-15880 None:intergenic 30.0%
ATGAGCTATGATATTCTAGT+TGG - tig0014622:15966-15985 Msa1355260:five_prime_UTR 30.0%
!! GTTTGGTTCTCTCAAAAGTT+TGG - tig0014622:14088-14107 Msa1355260:three_prime_UTR 35.0%
! ACACTGGTAACATTTTCTCA+TGG + tig0014622:14358-14377 None:intergenic 35.0%
! ATTGAGGTGAGAAAGTTGAT+AGG - tig0014622:14510-14529 Msa1355260:CDS 35.0%
AAAAAGCCTTAAATGGAGAC+AGG - tig0014622:14635-14654 Msa1355260:intron 35.0%
ATAAACCTGAAGAGATTACC+TGG - tig0014622:14661-14680 Msa1355260:intron 35.0%
TAAACCTGAAGAGATTACCT+GGG - tig0014622:14662-14681 Msa1355260:intron 35.0%
TATAATGAGAACAAATCGCC+AGG - tig0014622:14992-15011 Msa1355260:intron 35.0%
! AGTGATTTTCAGAAGAAACC+TGG + tig0014622:15013-15032 None:intergenic 35.0%
ACTTCAGCATGAGTGAAAAA+TGG - tig0014622:15054-15073 Msa1355260:intron 35.0%
! GATTTTCCAACCATTCTTCT+CGG - tig0014622:15348-15367 Msa1355260:intron 35.0%
TATTTCGTTACCGAGAAGAA+TGG + tig0014622:15361-15380 None:intergenic 35.0%
ATATGCTAAGAGAATGAGAG+AGG - tig0014622:15689-15708 Msa1355260:CDS 35.0%
! ATAACAAGATGCACTCCTTT+TGG - tig0014622:15715-15734 Msa1355260:CDS 35.0%
CAATATATCTCAGTTACTCG+CGG - tig0014622:15864-15883 Msa1355260:intron 35.0%
AATATATCTCAGTTACTCGC+GGG - tig0014622:15865-15884 Msa1355260:intron 35.0%
!! GTTTGGTTCTCTCAAAAGTT+TGG - tig0014622:14088-14107 Msa1355260:three_prime_UTR 35.0%
! ACACTGGTAACATTTTCTCA+TGG + tig0014622:14358-14377 None:intergenic 35.0%
! ATTGAGGTGAGAAAGTTGAT+AGG - tig0014622:14510-14529 Msa1355260:CDS 35.0%
AAAAAGCCTTAAATGGAGAC+AGG - tig0014622:14635-14654 Msa1355260:intron 35.0%
ATAAACCTGAAGAGATTACC+TGG - tig0014622:14661-14680 Msa1355260:intron 35.0%
TAAACCTGAAGAGATTACCT+GGG - tig0014622:14662-14681 Msa1355260:intron 35.0%
TATAATGAGAACAAATCGCC+AGG - tig0014622:14992-15011 Msa1355260:intron 35.0%
! AGTGATTTTCAGAAGAAACC+TGG + tig0014622:15013-15032 None:intergenic 35.0%
ACTTCAGCATGAGTGAAAAA+TGG - tig0014622:15054-15073 Msa1355260:intron 35.0%
! GATTTTCCAACCATTCTTCT+CGG - tig0014622:15348-15367 Msa1355260:intron 35.0%
TATTTCGTTACCGAGAAGAA+TGG + tig0014622:15361-15380 None:intergenic 35.0%
ATATGCTAAGAGAATGAGAG+AGG - tig0014622:15689-15708 Msa1355260:CDS 35.0%
! ATAACAAGATGCACTCCTTT+TGG - tig0014622:15715-15734 Msa1355260:CDS 35.0%
CAATATATCTCAGTTACTCG+CGG - tig0014622:15864-15883 Msa1355260:intron 35.0%
AATATATCTCAGTTACTCGC+GGG - tig0014622:15865-15884 Msa1355260:intron 35.0%
! TGTTCTTGTGATAGTGACAC+TGG + tig0014622:14374-14393 None:intergenic 40.0%
TGTTGCATTCCAGATCATTG+AGG - tig0014622:14494-14513 Msa1355260:CDS 40.0%
ACTTTCTCACCTCAATGATC+TGG + tig0014622:14506-14525 None:intergenic 40.0%
GTTCTGATGCATCCATTTCA+AGG - tig0014622:14562-14581 Msa1355260:intron 40.0%
TTGCTAATGAAGCAGAGACA+GGG - tig0014622:14922-14941 Msa1355260:CDS 40.0%
CAGAGACAGGGAAAATGTTT+AGG - tig0014622:14934-14953 Msa1355260:intron 40.0%
TAGGCCAAATTATTGTGCCA+AGG - tig0014622:14953-14972 Msa1355260:intron 40.0%
CCATCCTTGGCACAATAATT+TGG + tig0014622:14960-14979 None:intergenic 40.0%
CCAAATTATTGTGCCAAGGA+TGG - tig0014622:14957-14976 Msa1355260:intron 40.0%
ATTATTGTGCCAAGGATGGA+AGG - tig0014622:14961-14980 Msa1355260:intron 40.0%
CACTTGACAAACTGAAACCA+TGG + tig0014622:15237-15256 None:intergenic 40.0%
AAATATTATCCACAGCGCCT+CGG - tig0014622:15298-15317 Msa1355260:intron 40.0%
AAGAATGGTTGGAAAATCCC+GGG + tig0014622:15346-15365 None:intergenic 40.0%
GAAGAATGGTTGGAAAATCC+CGG + tig0014622:15347-15366 None:intergenic 40.0%
ATGAATTGTTGCAGATGGTG+AGG - tig0014622:15517-15536 Msa1355260:CDS 40.0%
TGAATTGTTGCAGATGGTGA+GGG - tig0014622:15518-15537 Msa1355260:CDS 40.0%
GATCAACTTGAACCTGCATT+TGG - tig0014622:15633-15652 Msa1355260:intron 40.0%
AACTTGAACCTGCATTTGGT+GGG - tig0014622:15637-15656 Msa1355260:intron 40.0%
TCATTATTCCCACCAAATGC+AGG + tig0014622:15648-15667 None:intergenic 40.0%
AGAGTTTGCATGTGTCCAAA+AGG + tig0014622:15733-15752 None:intergenic 40.0%
ACATTGTGTGAGACTGATGA+TGG + tig0014622:15756-15775 None:intergenic 40.0%
ACTAACCTGGTCAAATCTGA+AGG + tig0014622:15783-15802 None:intergenic 40.0%
ATCAGAATCTGCTACTAACC+TGG + tig0014622:15796-15815 None:intergenic 40.0%
ATATATCTCAGTTACTCGCG+GGG - tig0014622:15866-15885 Msa1355260:intron 40.0%
TTACCTTGTAGCAAGCTTGA+AGG - tig0014622:16052-16071 Msa1355260:five_prime_UTR 40.0%
! TGTTCTTGTGATAGTGACAC+TGG + tig0014622:14374-14393 None:intergenic 40.0%
TGTTGCATTCCAGATCATTG+AGG - tig0014622:14494-14513 Msa1355260:CDS 40.0%
ACTTTCTCACCTCAATGATC+TGG + tig0014622:14506-14525 None:intergenic 40.0%
GTTCTGATGCATCCATTTCA+AGG - tig0014622:14562-14581 Msa1355260:intron 40.0%
TTGCTAATGAAGCAGAGACA+GGG - tig0014622:14922-14941 Msa1355260:CDS 40.0%
CAGAGACAGGGAAAATGTTT+AGG - tig0014622:14934-14953 Msa1355260:intron 40.0%
TAGGCCAAATTATTGTGCCA+AGG - tig0014622:14953-14972 Msa1355260:intron 40.0%
CCATCCTTGGCACAATAATT+TGG + tig0014622:14960-14979 None:intergenic 40.0%
CCAAATTATTGTGCCAAGGA+TGG - tig0014622:14957-14976 Msa1355260:intron 40.0%
ATTATTGTGCCAAGGATGGA+AGG - tig0014622:14961-14980 Msa1355260:intron 40.0%
CACTTGACAAACTGAAACCA+TGG + tig0014622:15237-15256 None:intergenic 40.0%
AAATATTATCCACAGCGCCT+CGG - tig0014622:15298-15317 Msa1355260:intron 40.0%
AAGAATGGTTGGAAAATCCC+GGG + tig0014622:15346-15365 None:intergenic 40.0%
GAAGAATGGTTGGAAAATCC+CGG + tig0014622:15347-15366 None:intergenic 40.0%
ATGAATTGTTGCAGATGGTG+AGG - tig0014622:15517-15536 Msa1355260:CDS 40.0%
TGAATTGTTGCAGATGGTGA+GGG - tig0014622:15518-15537 Msa1355260:CDS 40.0%
GATCAACTTGAACCTGCATT+TGG - tig0014622:15633-15652 Msa1355260:intron 40.0%
AACTTGAACCTGCATTTGGT+GGG - tig0014622:15637-15656 Msa1355260:intron 40.0%
TCATTATTCCCACCAAATGC+AGG + tig0014622:15648-15667 None:intergenic 40.0%
AGAGTTTGCATGTGTCCAAA+AGG + tig0014622:15733-15752 None:intergenic 40.0%
ACATTGTGTGAGACTGATGA+TGG + tig0014622:15756-15775 None:intergenic 40.0%
ACTAACCTGGTCAAATCTGA+AGG + tig0014622:15783-15802 None:intergenic 40.0%
ATCAGAATCTGCTACTAACC+TGG + tig0014622:15796-15815 None:intergenic 40.0%
ATATATCTCAGTTACTCGCG+GGG - tig0014622:15866-15885 Msa1355260:intron 40.0%
TTACCTTGTAGCAAGCTTGA+AGG - tig0014622:16052-16071 Msa1355260:five_prime_UTR 40.0%
ACCTTTAGCAACACTGATGC+AGG + tig0014622:14118-14137 None:intergenic 45.0%
CTGAAGAAAACTGCCTCTGA+TGG - tig0014622:14332-14351 Msa1355260:CDS 45.0%
! CATTTTCTCATGGCCATCAG+AGG + tig0014622:14348-14367 None:intergenic 45.0%
GTCACTATCACAAGAACAGC+AGG - tig0014622:14376-14395 Msa1355260:CDS 45.0%
ATCACAAGAACAGCAGGCTA+AGG - tig0014622:14382-14401 Msa1355260:CDS 45.0%
CTTACCCAGGTAATCTCTTC+AGG + tig0014622:14669-14688 None:intergenic 45.0%
AAGCAAGCAGTAACTTACCC+AGG + tig0014622:14682-14701 None:intergenic 45.0%
GTTGCTAATGAAGCAGAGAC+AGG - tig0014622:14921-14940 Msa1355260:CDS 45.0%
TTTAAATCTTCCCCCTCACC+AGG - tig0014622:15186-15205 Msa1355260:intron 45.0%
! ATCTGGCTGGTTGATTTCCA+TGG - tig0014622:15217-15236 Msa1355260:intron 45.0%
CATACATGATTGCCAATCCG+AGG + tig0014622:15318-15337 None:intergenic 45.0%
GCAATCATGTATGATGCACC+CGG - tig0014622:15325-15344 Msa1355260:intron 45.0%
CAATCATGTATGATGCACCC+GGG - tig0014622:15326-15345 Msa1355260:intron 45.0%
TCGTTACCGAGAAGAATGGT+TGG + tig0014622:15357-15376 None:intergenic 45.0%
CAACTTGAACCTGCATTTGG+TGG - tig0014622:15636-15655 Msa1355260:intron 45.0%
TTCCTCCTTCAGATTTGACC+AGG - tig0014622:15775-15794 Msa1355260:intron 45.0%
AACCTGGTCAAATCTGAAGG+AGG + tig0014622:15780-15799 None:intergenic 45.0%
!! AAGCCTTCAAGCTTGCTACA+AGG + tig0014622:16058-16077 None:intergenic 45.0%
! GTAGCAAGCTTGAAGGCTTT+TGG - tig0014622:16059-16078 Msa1355260:five_prime_UTR 45.0%
ACCTTTAGCAACACTGATGC+AGG + tig0014622:14118-14137 None:intergenic 45.0%
CTGAAGAAAACTGCCTCTGA+TGG - tig0014622:14332-14351 Msa1355260:CDS 45.0%
! CATTTTCTCATGGCCATCAG+AGG + tig0014622:14348-14367 None:intergenic 45.0%
GTCACTATCACAAGAACAGC+AGG - tig0014622:14376-14395 Msa1355260:CDS 45.0%
ATCACAAGAACAGCAGGCTA+AGG - tig0014622:14382-14401 Msa1355260:CDS 45.0%
CTTACCCAGGTAATCTCTTC+AGG + tig0014622:14669-14688 None:intergenic 45.0%
AAGCAAGCAGTAACTTACCC+AGG + tig0014622:14682-14701 None:intergenic 45.0%
GTTGCTAATGAAGCAGAGAC+AGG - tig0014622:14921-14940 Msa1355260:CDS 45.0%
TTTAAATCTTCCCCCTCACC+AGG - tig0014622:15186-15205 Msa1355260:intron 45.0%
! ATCTGGCTGGTTGATTTCCA+TGG - tig0014622:15217-15236 Msa1355260:intron 45.0%
CATACATGATTGCCAATCCG+AGG + tig0014622:15318-15337 None:intergenic 45.0%
GCAATCATGTATGATGCACC+CGG - tig0014622:15325-15344 Msa1355260:intron 45.0%
CAATCATGTATGATGCACCC+GGG - tig0014622:15326-15345 Msa1355260:intron 45.0%
TCGTTACCGAGAAGAATGGT+TGG + tig0014622:15357-15376 None:intergenic 45.0%
CAACTTGAACCTGCATTTGG+TGG - tig0014622:15636-15655 Msa1355260:intron 45.0%
TTCCTCCTTCAGATTTGACC+AGG - tig0014622:15775-15794 Msa1355260:intron 45.0%
AACCTGGTCAAATCTGAAGG+AGG + tig0014622:15780-15799 None:intergenic 45.0%
!! AAGCCTTCAAGCTTGCTACA+AGG + tig0014622:16058-16077 None:intergenic 45.0%
! GTAGCAAGCTTGAAGGCTTT+TGG - tig0014622:16059-16078 Msa1355260:five_prime_UTR 45.0%
! GCCTGCATCAGTGTTGCTAA+AGG - tig0014622:14114-14133 Msa1355260:three_prime_UTR 50.0%
!! AAGTACTGGCCTTCCATCCT+TGG + tig0014622:14973-14992 None:intergenic 50.0%
! GCCTGCATCAGTGTTGCTAA+AGG - tig0014622:14114-14133 Msa1355260:three_prime_UTR 50.0%
!! AAGTACTGGCCTTCCATCCT+TGG + tig0014622:14973-14992 None:intergenic 50.0%
AGATCACCTGCTCCTGGTGA+GGG + tig0014622:15201-15220 None:intergenic 55.0%
TTATCCACAGCGCCTCGGAT+TGG - tig0014622:15303-15322 Msa1355260:intron 55.0%
AGTTACTCGCGGGGACACAA+AGG - tig0014622:15875-15894 Msa1355260:intron 55.0%
AGATCACCTGCTCCTGGTGA+GGG + tig0014622:15201-15220 None:intergenic 55.0%
TTATCCACAGCGCCTCGGAT+TGG - tig0014622:15303-15322 Msa1355260:intron 55.0%
AGTTACTCGCGGGGACACAA+AGG - tig0014622:15875-15894 Msa1355260:intron 55.0%
ATCACCTGCTCCTGGTGAGG+GGG + tig0014622:15199-15218 None:intergenic 60.0%
GATCACCTGCTCCTGGTGAG+GGG + tig0014622:15200-15219 None:intergenic 60.0%
CAGATCACCTGCTCCTGGTG+AGG + tig0014622:15202-15221 None:intergenic 60.0%
CTCACCAGGAGCAGGTGATC+TGG - tig0014622:15200-15219 Msa1355260:intron 60.0%
!! ATTGCCAATCCGAGGCGCTG+TGG + tig0014622:15310-15329 None:intergenic 60.0%
TCGCGGGGACACAAAGGTCA+TGG - tig0014622:15881-15900 Msa1355260:intron 60.0%
ATCACCTGCTCCTGGTGAGG+GGG + tig0014622:15199-15218 None:intergenic 60.0%
GATCACCTGCTCCTGGTGAG+GGG + tig0014622:15200-15219 None:intergenic 60.0%
CAGATCACCTGCTCCTGGTG+AGG + tig0014622:15202-15221 None:intergenic 60.0%
CTCACCAGGAGCAGGTGATC+TGG - tig0014622:15200-15219 Msa1355260:intron 60.0%
!! ATTGCCAATCCGAGGCGCTG+TGG + tig0014622:15310-15329 None:intergenic 60.0%
TCGCGGGGACACAAAGGTCA+TGG - tig0014622:15881-15900 Msa1355260:intron 60.0%
TCTTCCCCCTCACCAGGAGC+AGG - tig0014622:15192-15211 Msa1355260:intron 65.0%
CCAGCCAGATCACCTGCTCC+TGG + tig0014622:15207-15226 None:intergenic 65.0%
CCAGGAGCAGGTGATCTGGC+TGG - tig0014622:15204-15223 Msa1355260:intron 65.0%
TCTTCCCCCTCACCAGGAGC+AGG - tig0014622:15192-15211 Msa1355260:intron 65.0%
CCAGCCAGATCACCTGCTCC+TGG + tig0014622:15207-15226 None:intergenic 65.0%
CCAGGAGCAGGTGATCTGGC+TGG - tig0014622:15204-15223 Msa1355260:intron 65.0%
Chromosome Type Strat End Strand Name
tig0014622 gene 13950 16127 13950 ID=Msa1355260;Name=Msa1355260
tig0014622 mRNA 13950 16127 13950 ID=Msa1355260-mRNA-1;Parent=Msa1355260;Name=Msa1355260-mRNA-1;_AED=0.08;_eAED=0.08;_QI=206|0.66|0.85|0.85|0.83|0.71|7|219|339
tig0014622 exon 13950 14546 13950 ID=Msa1355260-mRNA-1:exon:9411;Parent=Msa1355260-mRNA-1
tig0014622 exon 14708 14950 14708 ID=Msa1355260-mRNA-1:exon:9410;Parent=Msa1355260-mRNA-1
tig0014622 exon 15064 15162 15064 ID=Msa1355260-mRNA-1:exon:9409;Parent=Msa1355260-mRNA-1
tig0014622 exon 15264 15302 15264 ID=Msa1355260-mRNA-1:exon:9408;Parent=Msa1355260-mRNA-1
tig0014622 exon 15394 15570 15394 ID=Msa1355260-mRNA-1:exon:9407;Parent=Msa1355260-mRNA-1
tig0014622 exon 15674 15777 15674 ID=Msa1355260-mRNA-1:exon:9406;Parent=Msa1355260-mRNA-1
tig0014622 exon 15942 16127 15942 ID=Msa1355260-mRNA-1:exon:9405;Parent=Msa1355260-mRNA-1
tig0014622 five_prime_UTR 15942 16127 15942 ID=Msa1355260-mRNA-1:five_prime_utr;Parent=Msa1355260-mRNA-1
tig0014622 five_prime_UTR 15758 15777 15758 ID=Msa1355260-mRNA-1:five_prime_utr;Parent=Msa1355260-mRNA-1
tig0014622 CDS 15674 15757 15674 ID=Msa1355260-mRNA-1:cds;Parent=Msa1355260-mRNA-1
tig0014622 CDS 15394 15570 15394 ID=Msa1355260-mRNA-1:cds;Parent=Msa1355260-mRNA-1
tig0014622 CDS 15264 15302 15264 ID=Msa1355260-mRNA-1:cds;Parent=Msa1355260-mRNA-1
tig0014622 CDS 15064 15162 15064 ID=Msa1355260-mRNA-1:cds;Parent=Msa1355260-mRNA-1
tig0014622 CDS 14708 14950 14708 ID=Msa1355260-mRNA-1:cds;Parent=Msa1355260-mRNA-1
tig0014622 CDS 14169 14546 14169 ID=Msa1355260-mRNA-1:cds;Parent=Msa1355260-mRNA-1
tig0014622 three_prime_UTR 13950 14168 13950 ID=Msa1355260-mRNA-1:three_prime_utr;Parent=Msa1355260-mRNA-1
Gene Sequence

>Msa1355260

ATGAGTGAGAATCTGAAGAAAACTGCCTCTGATGGCCATGAGAAAATGTTACCAGTGTCACTATCACAAGAACAGCAGGCTAAGATCATTGAGGTGAGAAAGTTGATAGGAACATTATCAGATAAGGAATCTGTGTACTGTTCTGATGCATCCATTTCAAGGTATTTAAAATCACAAAATTGGAATGTTAAGAAAGCTTCTCAAATGTTGAAAAAAAGCCTTAAATGGAGACAGGAATATAAACCTGAAGAGATTACCTGGATTGAATTTAAAGATGAGGCTTTTTTTAAGTTAGTTAAAGATGATGTTGCTAATGAAGCAGAGACAGGGAAAATGTTTAGGCCAAATTATTGTGCCAAGGATGGAAGGCCAGTACTTATAATGAGAACAAATCGCCAGAAGTCGAAGACATTAGTAGAAGAGATTAAGCATTTTGTTTACTGCATGGAGAATGCAATTTTAAATCTTCCCCCTCACCAGGAGCAGGTGATCTGGCTGGTTGATTTCCATGGTTTCAGTTTGTCAAGTGTATCATTCAAGATGACGCGCGAAGTTAGCCATATATTACAAAAATATTATCCACAGCGCCTCGGATTGGCAATCATGTATGATGCACCCGGGATTTTCCAACCATTCTTCTCGATGGTGAGGGTTCTGCTTGAGACCGAGAATTATAATAAGATAAAGTTTGTTTATTCTAACGACCAAAACACAAAGAAGATTATGGAGGGTTTATTTGATATGGATCAACTTGAACCTGCATTTGGTGGGAATAATGACACAGAATTTGATATGAATAAATATGCTAAGAGAATGAGAGAGGAAGATAACAAGATGCACTCCTTTTGGACACATGCAAACTCTCCATCATCAGTCTCACACAATGTTCCTCCTTCAGATTTGACCAGGTTAGTAGCAGATTCTGATGCTTCCAACAACGAGAAAATAGTTGATTCGTCAGTTCCTAAACCTGATCAATATATCTCAGTTACTCGCGGGGACACAAAGGTCATGGCATAG

Protein sequence

>Msa1355260

MSENLKKTASDGHEKMLPVSLSQEQQAKIIEVRKLIGTLSDKESVYCSDASISRYLKSQNWNVKKASQMLKKSLKWRQEYKPEEITWIEFKDEAFFKLVKDDVANEAETGKMFRPNYCAKDGRPVLIMRTNRQKSKTLVEEIKHFVYCMENAILNLPPHQEQVIWLVDFHGFSLSSVSFKMTREVSHILQKYYPQRLGLAIMYDAPGIFQPFFSMVRVLLETENYNKIKFVYSNDQNTKKIMEGLFDMDQLEPAFGGNNDTEFDMNKYAKRMREEDNKMHSFWTHANSPSSVSHNVPPSDLTRLVADSDASNNEKIVDSSVPKPDQYISVTRGDTKVMA*