AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0739570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0739570 MtrunA17_Chr5g0439381 97.615 587 14 0 1 587 1 587 0.0 1182
Msa0739570 MtrunA17_Chr5g0399061 48.571 560 263 6 18 556 17 572 0.0 554
Msa0739570 MtrunA17_Chr5g0399071 50.528 568 254 6 11 556 8 570 0.0 553
Msa0739570 MtrunA17_Chr4g0056431 51.579 570 252 7 9 556 6 573 0.0 544
Msa0739570 MtrunA17_Chr4g0063591 49.472 568 268 9 18 571 12 574 1.53e-171 499
Msa0739570 MtrunA17_Chr8g0375311 42.355 569 300 6 9 556 21 582 2.25e-154 455
Msa0739570 MtrunA17_Chr7g0241741 43.486 568 294 6 8 556 2 561 6.74e-153 451
Msa0739570 MtrunA17_Chr4g0005901 42.408 573 302 8 7 559 11 575 2.27e-150 445
Msa0739570 MtrunA17_Chr8g0375291 41.682 559 302 4 9 548 21 574 4.37e-149 442
Msa0739570 MtrunA17_Chr3g0142101 40.103 581 314 9 9 569 16 582 2.52e-147 437
Msa0739570 MtrunA17_Chr3g0104011 42.254 568 301 8 9 556 3 563 1.72e-146 434
Msa0739570 MtrunA17_Chr8g0375341 39.267 573 323 7 3 556 16 582 6.38e-142 423
Msa0739570 MtrunA17_Chr7g0261811 39.229 571 316 9 1 550 1 561 3.46e-141 422
Msa0739570 MtrunA17_Chr8g0375351 38.879 571 324 6 3 554 16 580 1.73e-139 417
Msa0739570 MtrunA17_Chr8g0375361 40.714 560 308 6 16 556 27 581 5.98e-139 416
Msa0739570 MtrunA17_Chr5g0422881 38.879 571 312 11 28 569 20 582 1.09e-138 415
Msa0739570 MtrunA17_Chr8g0375321 39.649 570 319 7 6 556 16 579 1.40e-138 415
Msa0739570 MtrunA17_Chr3g0142091 40.105 571 318 8 15 569 13 575 9.32e-138 412
Msa0739570 MtrunA17_Chr7g0261881 37.375 602 344 10 1 578 1 593 2.20e-134 404
Msa0739570 MtrunA17_Chr8g0375331 38.745 542 307 7 9 531 6 541 3.11e-133 400
Msa0739570 MtrunA17_Chr7g0261771 38.137 569 331 10 6 558 10 573 1.87e-129 392
Msa0739570 MtrunA17_Chr7g0217461 37.669 592 339 7 7 573 3 589 2.04e-128 389
Msa0739570 MtrunA17_Chr5g0415791 38.078 562 328 5 28 569 29 590 2.38e-128 389
Msa0739570 MtrunA17_Chr1g0187241 36.379 591 338 8 10 579 8 581 2.78e-128 389
Msa0739570 MtrunA17_Chr7g0240381 36.256 593 334 11 4 579 6 571 2.30e-127 386
Msa0739570 MtrunA17_Chr2g0276751 36.720 561 338 7 16 569 26 576 1.94e-126 384
Msa0739570 MtrunA17_Chr1g0166741 38.577 534 309 6 16 537 15 541 2.35e-126 383
Msa0739570 MtrunA17_Chr7g0255621 35.099 604 361 9 9 587 3 600 2.66e-126 384
Msa0739570 MtrunA17_Chr1g0166711 38.699 584 323 10 15 579 12 579 1.25e-125 382
Msa0739570 MtrunA17_Chr7g0214731 37.370 578 320 8 27 567 60 632 1.75e-125 383
Msa0739570 MtrunA17_Chr7g0261791 37.268 593 333 10 9 571 5 588 5.21e-125 380
Msa0739570 MtrunA17_Chr1g0166791 36.234 563 333 8 15 558 11 566 3.19e-124 378
Msa0739570 MtrunA17_Chr3g0112671 36.897 580 336 11 7 569 12 578 3.63e-124 378
Msa0739570 MtrunA17_Chr7g0261851 36.905 588 342 8 1 567 1 580 4.53e-124 378
Msa0739570 MtrunA17_Chr4g0008651 36.379 580 340 9 7 565 7 578 9.45e-124 377
Msa0739570 MtrunA17_Chr1g0166771 39.406 505 287 5 47 539 10 507 1.16e-122 372
Msa0739570 MtrunA17_Chr7g0255601 35.774 601 353 11 9 587 15 604 7.94e-121 370
Msa0739570 MtrunA17_Chr3g0112611 37.113 582 329 12 7 565 12 579 1.65e-120 369
Msa0739570 MtrunA17_Chr3g0114501 35.163 583 347 8 10 571 4 576 5.37e-119 365
Msa0739570 MtrunA17_Chr5g0400371 36.625 557 327 7 16 550 100 652 3.07e-118 365
Msa0739570 MtrunA17_Chr7g0255611 34.549 576 350 8 19 573 22 591 9.26e-117 359
Msa0739570 MtrunA17_Chr8g0362711 37.435 577 332 7 9 561 5 576 1.02e-116 358
Msa0739570 MtrunA17_Chr4g0059971 33.913 575 342 7 7 556 23 584 5.57e-116 357
Msa0739570 MtrunA17_Chr4g0054891 35.273 567 348 6 16 566 98 661 8.26e-116 359
Msa0739570 MtrunA17_Chr1g0193391 35.179 560 340 8 28 575 17 565 2.63e-115 355
Msa0739570 MtrunA17_Chr5g0415961 37.671 584 308 8 19 564 15 580 2.50e-112 347
Msa0739570 MtrunA17_Chr8g0362781 34.982 566 343 6 15 556 17 581 2.43e-111 345
Msa0739570 MtrunA17_Chr7g0214461 34.043 564 349 8 22 571 72 626 1.03e-110 344
Msa0739570 MtrunA17_Chr4g0059991 33.860 570 342 7 33 573 27 590 2.24e-110 343
Msa0739570 MtrunA17_Chr3g0077151 36.852 559 304 10 16 556 16 543 2.89e-110 340
Msa0739570 MtrunA17_Chr1g0213711 34.281 563 352 8 26 575 19 576 1.30e-109 340
Msa0739570 MtrunA17_Chr2g0284701 34.642 586 352 10 15 571 19 602 1.51e-109 340
Msa0739570 MtrunA17_Chr4g0014871 36.380 558 316 10 16 556 18 553 2.35e-109 339
Msa0739570 MtrunA17_Chr3g0133341 33.570 563 349 7 24 569 10 564 2.19e-108 337
Msa0739570 MtrunA17_Chr7g0271221 35.636 550 323 10 28 561 17 551 4.02e-108 336
Msa0739570 MtrunA17_Chr4g0014841 36.898 561 306 11 16 556 17 549 4.83e-108 335
Msa0739570 MtrunA17_Chr4g0059981 32.546 593 370 9 6 571 7 596 9.42e-108 336
Msa0739570 MtrunA17_Chr4g0014791 36.022 558 315 10 16 556 17 549 1.32e-106 332
Msa0739570 MtrunA17_Chr4g0014801 36.380 558 315 9 16 556 17 551 3.00e-105 328
Msa0739570 MtrunA17_Chr8g0362801 37.764 474 274 6 118 571 3 475 6.98e-105 325
Msa0739570 MtrunA17_Chr4g0014781 35.599 559 318 10 16 556 17 551 1.69e-104 326
Msa0739570 MtrunA17_Chr7g0218851 33.808 562 347 9 23 568 41 593 1.04e-103 325
Msa0739570 MtrunA17_Chr4g0003761 32.746 568 348 12 32 576 34 590 7.57e-103 323
Msa0739570 MtrunA17_Chr8g0353031 34.014 588 320 13 29 582 19 572 5.45e-102 320
Msa0739570 MtrunA17_Chr8g0390331 34.091 572 352 8 28 580 15 580 6.50e-102 320
Msa0739570 MtrunA17_Chr7g0261661 37.149 463 263 8 116 558 1 455 1.49e-101 317
Msa0739570 MtrunA17_Chr8g0379971 32.886 596 355 10 16 567 8 602 1.87e-97 309
Msa0739570 MtrunA17_Chr8g0379991 32.929 577 321 10 52 567 4 575 2.78e-96 305
Msa0739570 MtrunA17_Chr1g0166731 37.603 484 267 10 115 579 9 476 4.93e-96 301
Msa0739570 MtrunA17_Chr2g0331521 30.488 574 365 11 24 574 18 580 1.70e-94 301
Msa0739570 MtrunA17_Chr2g0331471 33.097 565 350 10 28 570 88 646 4.62e-94 303
Msa0739570 MtrunA17_Chr4g0011471 35.000 520 317 7 53 554 41 557 1.14e-93 298
Msa0739570 MtrunA17_Chr7g0261751 36.786 473 255 7 6 438 10 478 3.78e-93 295
Msa0739570 MtrunA17_Chr4g0060001 33.272 541 340 9 24 546 25 562 1.29e-92 296
Msa0739570 MtrunA17_Chr2g0331481 32.799 561 349 10 32 570 29 583 4.92e-91 293
Msa0739570 MtrunA17_Chr2g0331511 30.742 566 364 10 28 571 21 580 1.11e-90 292
Msa0739570 MtrunA17_Chr7g0240271 31.070 589 378 10 7 571 3 587 4.75e-90 289
Msa0739570 MtrunA17_Chr1g0147631 33.517 543 333 10 28 549 25 560 3.45e-88 285
Msa0739570 MtrunA17_Chr1g0157601 31.204 548 344 11 26 550 13 550 4.95e-88 283
Msa0739570 MtrunA17_Chr4g0069581 35.907 518 299 9 57 556 15 517 1.20e-87 282
Msa0739570 MtrunA17_Chr3g0082631 36.526 449 245 8 149 564 26 467 3.64e-87 278
Msa0739570 MtrunA17_Chr4g0011041 29.545 572 379 7 3 554 12 579 6.89e-87 281
Msa0739570 MtrunA17_Chr7g0240281 33.333 549 338 9 26 550 22 566 4.46e-85 276
Msa0739570 MtrunA17_Chr5g0415841 33.769 459 282 6 118 556 3 459 5.35e-85 273
Msa0739570 MtrunA17_Chr1g0177591 29.735 565 366 11 7 559 25 570 2.78e-84 274
Msa0739570 MtrunA17_Chr1g0157611 31.383 564 353 11 28 567 16 569 1.69e-83 271
Msa0739570 MtrunA17_Chr1g0157621 31.646 553 344 10 53 579 5 549 4.76e-81 265
Msa0739570 MtrunA17_Chr2g0331461 31.434 579 366 11 32 585 29 601 5.96e-80 264
Msa0739570 MtrunA17_Chr2g0325951 30.000 540 354 12 29 556 20 547 1.64e-79 260
Msa0739570 MtrunA17_Chr7g0261731 40.233 343 194 6 4 339 4 342 8.12e-79 253
Msa0739570 MtrunA17_Chr4g0014861 34.783 437 260 8 144 564 7 434 2.79e-78 254
Msa0739570 MtrunA17_Chr2g0325961 30.314 541 352 11 29 556 20 548 2.53e-77 255
Msa0739570 MtrunA17_Chr7g0240131 33.772 456 276 8 119 552 4 455 9.85e-76 249
Msa0739570 MtrunA17_Chr7g0235521 33.772 456 276 8 119 552 4 455 1.82e-75 248
Msa0739570 MtrunA17_Chr7g0240211 33.772 456 276 8 119 552 4 455 4.35e-75 247
Msa0739570 MtrunA17_Chr7g0240181 33.772 456 276 8 119 552 4 455 5.96e-75 246
Msa0739570 MtrunA17_Chr2g0326211 28.361 543 365 9 26 556 17 547 2.15e-73 244
Msa0739570 MtrunA17_Chr1g0177611 32.464 422 270 8 150 559 23 441 2.44e-72 239
Msa0739570 MtrunA17_Chr1g0177631 33.886 422 264 8 150 559 23 441 1.93e-69 231
Msa0739570 MtrunA17_Chr3g0142121 41.786 280 151 5 298 570 11 285 6.48e-69 224
Msa0739570 MtrunA17_Chr7g0240151 32.301 452 270 8 119 552 4 437 2.51e-68 228
Msa0739570 MtrunA17_Chr6g0451841 29.220 551 326 13 47 566 24 541 9.15e-65 221
Msa0739570 MtrunA17_Chr3g0142111 40.278 288 161 3 9 294 27 305 2.10e-64 214
Msa0739570 MtrunA17_Chr3g0112631 38.776 294 154 9 297 569 3 291 1.47e-61 205
Msa0739570 MtrunA17_Chr7g0234381 34.590 451 248 13 115 553 3 418 1.45e-58 201
Msa0739570 MtrunA17_Chr4g0060071 36.111 288 163 5 286 561 25 303 1.55e-55 190
Msa0739570 MtrunA17_Chr7g0234181 33.408 446 254 12 118 553 1 413 6.60e-55 191
Msa0739570 MtrunA17_Chr7g0234151 33.038 451 255 13 115 553 3 418 8.26e-54 188
Msa0739570 MtrunA17_Chr7g0261721 37.186 199 114 3 371 558 5 203 4.93e-36 135
Msa0739570 MtrunA17_Chr3g0112651 36.264 182 105 4 103 282 9 181 3.11e-28 112
Msa0739570 MtrunA17_Chr4g0060061 42.276 123 71 0 143 265 8 130 1.24e-27 108
Msa0739570 MtrunA17_Chr2g0326221 27.632 228 144 5 331 556 15 223 7.11e-27 108
Msa0739570 MtrunA17_Chr1g0147591 29.688 192 128 3 161 345 10 201 8.30e-23 96.7
Msa0739570 MtrunA17_Chr4g0014851 44.792 96 53 0 16 111 18 113 5.98e-21 90.1
Msa0739570 MtrunA17_Chr7g0261671 37.719 114 68 1 1 111 2 115 3.12e-18 80.9
Msa0739570 MtrunA17_Chr4g0060051 48.387 93 48 0 19 111 13 105 5.35e-18 80.5
Msa0739570 MtrunA17_Chr1g0166721 33.846 130 71 2 15 144 12 126 6.44e-18 80.9
Msa0739570 MtrunA17_Chr7g0261831 28.049 164 101 4 262 415 3 159 3.64e-16 77.8
Msa0739570 MtrunA17_Chr3g0112661 36.458 96 61 0 16 111 19 114 4.37e-14 69.7
Msa0739570 MtrunA17_Chr1g0147581 36.441 118 65 3 421 530 1 116 1.38e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0739570 AT3G21670.1 70.506 573 162 3 5 572 6 576 0.0 808
Msa0739570 AT1G12110.1 48.862 571 269 6 18 567 15 583 0.0 540
Msa0739570 AT2G26690.1 50.086 579 260 10 9 571 2 567 0.0 527
Msa0739570 AT2G26690.2 49.358 545 248 9 42 571 3 534 2.74e-167 487
Msa0739570 AT2G26690.3 49.533 535 242 9 52 571 1 522 1.19e-163 478
Msa0739570 AT3G54140.1 42.328 567 302 6 9 556 3 563 3.57e-158 465
Msa0739570 AT3G54140.2 42.328 567 302 6 9 556 3 563 3.57e-158 465
Msa0739570 AT2G02040.1 41.270 567 309 5 9 556 20 581 9.69e-150 444
Msa0739570 AT5G01180.2 40.564 567 311 7 9 556 4 563 5.58e-145 431
Msa0739570 AT5G01180.3 40.564 567 311 7 9 556 4 563 5.58e-145 431
Msa0739570 AT5G01180.1 40.564 567 311 7 9 556 4 563 5.58e-145 431
Msa0739570 AT1G62200.1 40.108 556 318 4 13 556 35 587 1.11e-144 431
Msa0739570 AT1G62200.3 38.291 585 317 5 13 556 49 630 1.32e-138 417
Msa0739570 AT1G62200.2 38.291 585 317 5 13 556 35 616 1.76e-138 416
Msa0739570 AT1G59740.1 38.636 572 329 7 6 561 17 582 1.49e-134 405
Msa0739570 AT1G68570.1 40.069 579 318 11 24 577 17 591 1.56e-127 387
Msa0739570 AT5G46050.1 40.111 541 295 8 16 536 13 544 1.11e-126 384
Msa0739570 AT2G02020.1 37.770 556 303 7 9 555 21 542 7.26e-126 381
Msa0739570 AT1G68570.2 40.642 561 304 11 42 577 5 561 9.40e-126 382
Msa0739570 AT3G53960.1 35.826 575 341 9 16 569 23 590 9.61e-124 377
Msa0739570 AT2G37900.1 34.867 565 350 5 2 556 10 566 7.91e-123 374
Msa0739570 AT1G33440.1 36.632 576 336 9 15 569 23 590 1.51e-120 369
Msa0739570 AT5G13400.1 35.395 582 340 8 13 567 46 618 8.20e-118 363
Msa0739570 AT1G32450.1 35.512 566 338 7 9 550 16 578 3.44e-116 358
Msa0739570 AT5G46040.1 37.543 578 325 10 16 571 13 576 4.72e-116 357
Msa0739570 AT1G27040.1 36.643 554 323 6 20 555 17 560 1.10e-114 353
Msa0739570 AT1G27040.2 36.643 554 323 6 20 555 13 556 1.13e-114 353
Msa0739570 AT1G69850.1 37.368 570 319 10 20 556 15 579 1.94e-114 353
Msa0739570 AT1G69870.1 35.273 567 339 8 28 569 49 612 8.31e-114 352
Msa0739570 AT3G54450.1 34.729 573 319 11 27 571 9 554 2.54e-113 349
Msa0739570 AT4G21680.1 37.345 565 325 8 15 555 13 572 7.28e-113 349
Msa0739570 AT2G37900.2 36.122 490 295 5 77 556 6 487 1.06e-110 340
Msa0739570 AT2G40460.1 36.364 572 323 10 15 563 9 562 1.46e-110 343
Msa0739570 AT1G18880.1 34.448 598 354 10 9 580 2 587 7.80e-110 341
Msa0739570 AT1G72140.1 35.536 560 311 11 18 556 22 552 4.24e-109 338
Msa0739570 AT1G27040.3 36.194 536 306 6 42 555 7 528 1.47e-108 336
Msa0739570 AT5G62680.1 34.215 567 343 8 33 571 46 610 1.47e-108 339
Msa0739570 AT2G02020.2 34.712 556 299 7 9 555 21 521 4.30e-107 332
Msa0739570 AT5G19640.1 34.495 545 325 10 31 560 60 587 6.48e-103 324
Msa0739570 AT5G46050.2 40.590 441 233 8 116 536 1 432 7.90e-102 317
Msa0739570 AT1G22540.1 36.151 556 315 11 19 556 19 552 9.73e-102 319
Msa0739570 AT3G16180.1 33.506 579 356 10 24 576 16 591 1.05e-101 320
Msa0739570 AT1G72130.1 33.800 571 325 10 1 556 1 533 2.99e-101 317
Msa0739570 AT1G52190.1 32.000 600 373 10 15 586 7 599 4.68e-101 319
Msa0739570 AT3G47960.1 33.515 549 336 6 33 556 64 608 5.45e-101 320
Msa0739570 AT1G22550.1 35.472 561 321 12 18 556 18 559 1.51e-100 316
Msa0739570 AT1G27080.1 35.651 561 337 11 28 573 12 563 4.42e-100 315
Msa0739570 AT5G62730.1 34.035 570 327 9 13 556 39 585 9.51e-100 315
Msa0739570 AT1G22570.1 36.007 536 309 11 18 534 18 538 5.35e-99 312
Msa0739570 AT1G72120.1 35.727 557 319 10 18 556 17 552 1.14e-97 308
Msa0739570 AT1G72125.1 34.050 558 331 11 18 556 17 556 2.55e-95 303
Msa0739570 AT5G62730.2 33.759 548 314 9 35 556 2 526 1.62e-93 297
Msa0739570 AT3G25260.1 32.714 538 325 8 20 553 11 515 5.37e-92 293
Msa0739570 AT1G27080.2 35.417 528 317 11 61 573 3 521 6.04e-91 290
Msa0739570 AT1G22570.2 35.146 515 300 11 39 534 2 501 2.50e-89 286
Msa0739570 AT3G25280.1 33.640 544 318 11 20 553 11 521 4.50e-89 285
Msa0739570 AT1G69860.1 33.700 546 341 8 28 560 16 553 2.19e-88 284
Msa0739570 AT3G45710.1 30.442 565 364 12 13 567 6 551 4.52e-87 281
Msa0739570 AT3G45680.1 30.380 553 361 11 23 566 15 552 1.42e-86 280
Msa0739570 AT5G28470.2 29.853 546 364 7 24 553 11 553 3.50e-85 276
Msa0739570 AT3G45650.1 29.234 561 370 9 16 567 8 550 5.21e-85 276
Msa0739570 AT3G45720.1 29.570 558 371 10 20 568 9 553 3.82e-83 271
Msa0739570 AT3G45700.1 30.565 566 362 14 14 572 2 543 4.44e-83 270
Msa0739570 AT5G28470.1 29.670 546 363 8 24 553 11 551 3.59e-82 268
Msa0739570 AT3G45660.1 28.975 566 373 10 12 567 3 549 2.84e-81 266
Msa0739570 AT3G45660.3 28.975 566 373 10 12 567 3 549 2.84e-81 266
Msa0739570 AT3G45660.2 28.975 566 373 10 12 567 24 570 3.92e-81 266
Msa0739570 AT3G45650.2 28.109 587 369 10 16 567 8 576 4.20e-80 263
Msa0739570 AT1G72130.2 33.875 431 250 8 141 556 5 415 3.28e-76 248
Msa0739570 AT1G72130.3 33.875 431 250 8 141 556 5 415 3.28e-76 248
Msa0739570 AT5G14940.1 28.467 548 342 12 47 566 24 549 3.11e-72 242
Msa0739570 AT3G45690.1 28.597 549 331 14 29 571 17 510 2.09e-68 231
Msa0739570 AT3G01350.1 27.911 541 332 12 47 549 24 544 2.45e-60 210
Msa0739570 AT5G11570.1 27.626 514 302 9 39 547 22 470 3.87e-57 199
Msa0739570 AT2G38100.2 26.796 515 326 14 58 553 2 484 5.14e-41 155
Msa0739570 AT2G38100.1 26.602 515 327 14 58 553 18 500 1.43e-40 155
Msa0739570 AT2G38100.3 26.602 515 327 14 58 553 24 506 2.02e-40 154

Find 114 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAACTTGCTTGGCCTTCT+TGG 0.112136 5_1:+57915053 Msa0739570:CDS
TACCATAGTTACCAACTTTA+TGG 0.128785 5_1:+57915025 Msa0739570:CDS
TGCCTCATGTTTGTTGATTT+TGG 0.131622 5_1:+57917840 Msa0739570:three_prime_UTR
GAAGTCCTTTAACTATTATT+TGG 0.187229 5_1:+57915945 Msa0739570:CDS
TATTGGTTGCTAGCAGTTCT+TGG 0.240252 5_1:+57917617 Msa0739570:CDS
ACCCTCCAAATAATAGTTAA+AGG 0.242437 5_1:-57915950 None:intergenic
GTAGGAAGAGGTTGGGGATA+TGG 0.242746 5_1:+57915842 Msa0739570:CDS
CAATACAACCACTGAAAATA+AGG 0.259078 5_1:-57915801 None:intergenic
AAATCCAATGTGTCAGGATT+TGG 0.274378 5_1:+57915689 Msa0739570:CDS
GGTCAACATGCATACTCTTT+TGG 0.280969 5_1:+57917042 Msa0739570:CDS
GCACTTTATACAATAGCTTT+AGG 0.289484 5_1:+57915653 Msa0739570:CDS
TCAAGTTGAGGAAGTTAAAA+TGG 0.307630 5_1:+57916998 Msa0739570:CDS
TCACATATACAGACAAATTC+AGG 0.344673 5_1:+57916053 Msa0739570:CDS
TGTAGCTATGGTTGCAGATA+TGG 0.350170 5_1:-57915120 None:intergenic
CAAGTATGTCACTAAGTTCA+TGG 0.354511 5_1:-57914967 None:intergenic
ACCATAGTTACCAACTTTAT+GGG 0.356405 5_1:+57915026 Msa0739570:CDS
TAGTGGTCTGGAAGAATATA+AGG 0.371384 5_1:-57914541 None:intergenic
GTAAGTTAGATTACTTCTAT+TGG 0.376728 5_1:+57917600 Msa0739570:CDS
CTAGCAGCAGGACTAATCTT+AGG 0.379230 5_1:+57914820 Msa0739570:CDS
TCCCATAAAGTTGGTAACTA+TGG 0.388879 5_1:-57915027 None:intergenic
GAGTATGCATGTTGACCAAA+TGG 0.390833 5_1:-57917036 None:intergenic
ATAGATATTTAGTATGTGTT+TGG 0.394077 5_1:+57917924 Msa0739570:three_prime_UTR
GAAGTCAAAATTGGTGTTGA+TGG 0.395194 5_1:+57917752 Msa0739570:CDS
TGCTGAAAGAATATGTGTTA+TGG 0.407089 5_1:+57914938 Msa0739570:CDS
TAATCAAACTCCTTCCCATT+TGG 0.408088 5_1:+57917021 Msa0739570:CDS
TATTTAGTATGTGTTTGGTT+TGG 0.415652 5_1:+57917929 Msa0739570:three_prime_UTR
GCTGAAAGAATATGTGTTAT+GGG 0.417604 5_1:+57914939 Msa0739570:CDS
AACTTGCTTGGCCTTCTTGG+TGG 0.427150 5_1:+57915056 Msa0739570:CDS
AGACAATGTAGGAAGAGGTT+GGG 0.428903 5_1:+57915835 Msa0739570:CDS
ATGGGAACTCTCAACTTGCT+TGG 0.432571 5_1:+57915044 Msa0739570:CDS
AGTCTTCAAAGGGTAGGAAT+TGG 0.433015 5_1:+57917260 Msa0739570:CDS
TAGCTTATTGGTTTCAATTG+TGG 0.435213 5_1:+57917532 Msa0739570:CDS
CATGAACTTAGTGACATACT+TGG 0.438629 5_1:+57914968 Msa0739570:CDS
TAGGTTCTTGTTGCAAGTAA+TGG 0.442403 5_1:+57914718 Msa0739570:intron
CCTTTGAGTTTGTTTCATCT+AGG 0.443818 5_1:-57916935 None:intergenic
GGAATAAAATCCAATGTGTC+AGG 0.449338 5_1:+57915683 Msa0739570:CDS
CTCATAGATTTCATCCTCTC+AGG 0.449651 5_1:-57917464 None:intergenic
CTTGTGAATGAAGTCAAAAT+TGG 0.452441 5_1:+57917743 Msa0739570:CDS
GCAACAAAATACTAGTGGTC+TGG 0.461437 5_1:-57914553 None:intergenic
TATATTTGAACATATTTATG+TGG 0.472886 5_1:+57918006 Msa0739570:three_prime_UTR
TTTCTATGTACACTTTCAAT+GGG 0.473347 5_1:+57917497 Msa0739570:CDS
TTTCTAGCTGATGCAAAACT+TGG 0.477374 5_1:+57915080 Msa0739570:CDS
GTCCTTTAACTATTATTTGG+AGG 0.477749 5_1:+57915948 Msa0739570:CDS
CACTTGCTTGAATGCACTGA+TGG 0.481321 5_1:-57915604 None:intergenic
AAGGTAGGATCAGAAGGGAT+AGG 0.490235 5_1:-57916004 None:intergenic
TGGGGATATGGAATTTCAGC+AGG 0.493923 5_1:+57915854 Msa0739570:CDS
TCTGATCCTACCTTACTCAA+TGG 0.497892 5_1:+57916013 Msa0739570:CDS
TTCAAGATAACCATTGAGTA+AGG 0.498836 5_1:-57916023 None:intergenic
AACTTAGTGACATACTTGGT+TGG 0.500262 5_1:+57914972 Msa0739570:CDS
CAAAATTGGTGTTGATGGAA+AGG 0.501352 5_1:+57917757 Msa0739570:CDS
ACATTCATGAACAGAAAAGT+TGG 0.504425 5_1:+57917107 Msa0739570:CDS
GATGATGAGAAAAGCTGATA+AGG 0.506299 5_1:-57917153 None:intergenic
CTTACTTCACTGCATGGAGG+AGG 0.506716 5_1:-57915572 None:intergenic
TCCTTTAACTATTATTTGGA+GGG 0.510757 5_1:+57915949 Msa0739570:CDS
TATACAATAGCTTTAGGAGG+TGG 0.514951 5_1:+57915659 Msa0739570:CDS
GTTGAGAGTTCCCATAAAGT+TGG 0.518445 5_1:-57915036 None:intergenic
TTGAGTAAGGTAGGATCAGA+AGG 0.518588 5_1:-57916010 None:intergenic
AAAGCTGATAAGGATCCTGC+TGG 0.518733 5_1:-57917143 None:intergenic
AGGATGAAATCTATGAGTAC+TGG 0.519350 5_1:+57917470 Msa0739570:CDS
GTTTATGTTCAAGACAATGT+AGG 0.523353 5_1:+57915824 Msa0739570:CDS
TGAAGACTTGTGAGTCCTTG+AGG 0.526978 5_1:-57917245 None:intergenic
ACAAAGTAAGCAAGAAAAGA+TGG 0.527615 5_1:+57917555 Msa0739570:CDS
TGTCTTCTTACTTCACTGCA+TGG 0.527871 5_1:-57915578 None:intergenic
ACAATAGCTTTAGGAGGTGG+AGG 0.528481 5_1:+57915662 Msa0739570:CDS
GTTCAAGACAATGTAGGAAG+AGG 0.528760 5_1:+57915830 Msa0739570:CDS
AAGACAATGTAGGAAGAGGT+TGG 0.532441 5_1:+57915834 Msa0739570:CDS
AAGGACTCACAAGTCTTCAA+AGG 0.534367 5_1:+57917249 Msa0739570:CDS
CAATGGTTATCTTGAAGCTA+AGG 0.534910 5_1:+57916030 Msa0739570:CDS
CATGGAGGAGGTGTCATGCT+AGG 0.540523 5_1:-57915560 None:intergenic
GACAATGTAGGAAGAGGTTG+GGG 0.549581 5_1:+57915836 Msa0739570:CDS
TAGGGAAGTAAAGAGGAGAA+TGG 0.551633 5_1:-57917177 None:intergenic
ACTGGAGGATGGCTAGCAGC+AGG 0.553684 5_1:+57914808 Msa0739570:CDS
TCTCATTTAGGGAAGTAAAG+AGG 0.554210 5_1:-57917184 None:intergenic
TGGCATTATAGATTGTGTGC+AGG 0.557141 5_1:+57917805 Msa0739570:three_prime_UTR
AGTATGCATGTTGACCAAAT+GGG 0.557444 5_1:-57917035 None:intergenic
TTCAACAATGACTCAAGTTG+AGG 0.561755 5_1:+57916986 Msa0739570:CDS
CTATCGTTGAGAAAGAAAGA+AGG 0.562368 5_1:+57917318 Msa0739570:CDS
CTAGGATTGCTGCTTTGTCA+AGG 0.562473 5_1:-57916917 None:intergenic
TGGTAGCAGAGCTAGCTGAA+TGG 0.566779 5_1:-57915007 None:intergenic
AGGACTCACAAGTCTTCAAA+GGG 0.568729 5_1:+57917250 Msa0739570:CDS
AGATAACCATTGAGTAAGGT+AGG 0.570016 5_1:-57916019 None:intergenic
GGGACAATGTTGGTAGCAGT+TGG 0.571832 5_1:+57915875 Msa0739570:CDS
CTTTATACAATAGCTTTAGG+AGG 0.584110 5_1:+57915656 Msa0739570:CDS
TATAGATTCAAGAAACCTCA+AGG 0.587404 5_1:+57915923 Msa0739570:CDS
AGATCCAAATCCTGACACAT+TGG 0.597111 5_1:-57915693 None:intergenic
CAGCTAGAAAACCACCAAGA+AGG 0.599258 5_1:-57915067 None:intergenic
CATTATAGATTGTGTGCAGG+AGG 0.600264 5_1:+57917808 Msa0739570:three_prime_UTR
GGGTGTGTGTATGTTAACTT+TGG 0.601232 5_1:+57915526 Msa0739570:intron
CATCAGTGCATTCAAGCAAG+TGG 0.606733 5_1:+57915605 Msa0739570:CDS
GGTTTCTTGAATCTATACAA+TGG 0.607400 5_1:-57915917 None:intergenic
ATTTGACACAAATGATCCAA+AGG 0.609233 5_1:+57915721 Msa0739570:CDS
AATTTCAGCAGGGACAATGT+TGG 0.609240 5_1:+57915865 Msa0739570:CDS
CTTCTTACTTCACTGCATGG+AGG 0.613511 5_1:-57915575 None:intergenic
GTCATTGTTGAAACTAACCA+TGG 0.615360 5_1:-57916975 None:intergenic
ACGGAAACAACGAAAATCCA+TGG 0.615614 5_1:+57916958 Msa0739570:CDS
CCTAGATGAAACAAACTCAA+AGG 0.617218 5_1:+57916935 Msa0739570:CDS
GATGAAACAAACTCAAAGGA+CGG 0.619454 5_1:+57916939 Msa0739570:CDS
GGATCACTAGAGATTCCAGC+AGG 0.623448 5_1:+57917128 Msa0739570:CDS
CTCTAACAGAACATACAACA+TGG 0.625768 5_1:+57914595 Msa0739570:exon
AAAATCACTCACAATCCTCA+AGG 0.633571 5_1:+57917230 Msa0739570:CDS
TATCGTTGAGAAAGAAAGAA+GGG 0.638376 5_1:+57917319 Msa0739570:CDS
TTACAGCAACAAAATACTAG+TGG 0.645393 5_1:-57914558 None:intergenic
TGCATGTTGACCAAATGGGA+AGG 0.645769 5_1:-57917031 None:intergenic
ACCCAAAATCAACAAACATG+AGG 0.647107 5_1:-57917842 None:intergenic
ATCTGCAACCATAGCTACAG+TGG 0.647691 5_1:+57915124 Msa0739570:CDS
CTCACAAGTCTTCAAAGGGT+AGG 0.662620 5_1:+57917254 Msa0739570:CDS
TGAGTAAGGTAGGATCAGAA+GGG 0.672680 5_1:-57916009 None:intergenic
ATAGTTAAAGGACTTCCTTG+AGG 0.673498 5_1:-57915938 None:intergenic
TTGAAGAGTAATCTTGACAA+GGG 0.673892 5_1:+57917578 Msa0739570:CDS
TCATAAGGGAAGCACCTGAG+AGG 0.674202 5_1:+57917450 Msa0739570:CDS
GTTGAAGAGTAATCTTGACA+AGG 0.676705 5_1:+57917577 Msa0739570:CDS
TGTAGCTTGCTCAATTGTGA+AGG 0.695807 5_1:-57917087 None:intergenic
GGGGATATGGAATTTCAGCA+GGG 0.706056 5_1:+57915855 Msa0739570:CDS
AGGCACAGCAGACAATGCTG+CGG 0.721689 5_1:+57914750 Msa0739570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTTATAAACTACTA+TGG + chr5_1:57915165-57915184 Msa0739570:intron 10.0%
!! AATCCATAAAAAAATTTCTA+AGG + chr5_1:57914851-57914870 Msa0739570:intron 15.0%
!!! TTCTACTTTTTTATAAGTAT+TGG + chr5_1:57915776-57915795 Msa0739570:CDS 15.0%
!! TCATACTTATTACTATTTAT+TGG + chr5_1:57916195-57916214 Msa0739570:intron 15.0%
!! CATACTTATTACTATTTATT+GGG + chr5_1:57916196-57916215 Msa0739570:intron 15.0%
!! ATACTTATTACTATTTATTG+GGG + chr5_1:57916197-57916216 Msa0739570:intron 15.0%
!! TATATTTGAACATATTTATG+TGG + chr5_1:57918006-57918025 Msa0739570:three_prime_UTR 15.0%
!!! GAACCTTAGAAATTTTTTTA+TGG - chr5_1:57914857-57914876 None:intergenic 20.0%
!!! TTCTAAGGTTCAATTTTATT+TGG + chr5_1:57914866-57914885 Msa0739570:intron 20.0%
!!! ATTATACACAATGATTTTGT+TGG - chr5_1:57914894-57914913 None:intergenic 20.0%
!! TACTTATTACTATTTATTGG+GGG + chr5_1:57916198-57916217 Msa0739570:intron 20.0%
!!! TGTATTGTATTGTATTCTTT+TGG + chr5_1:57916407-57916426 Msa0739570:intron 20.0%
!! TAAATTATTCCTCGAAATTA+TGG - chr5_1:57916795-57916814 None:intergenic 20.0%
!! GATAATGATAATCTAGAAAA+TGG + chr5_1:57916828-57916847 Msa0739570:intron 20.0%
!!! TACAGTTATTTTCTCATTTA+GGG - chr5_1:57917198-57917217 None:intergenic 20.0%
!!! ATATTTTGTTAGTAGCTTAT+TGG + chr5_1:57917520-57917539 Msa0739570:CDS 20.0%
!! ATAGATATTTAGTATGTGTT+TGG + chr5_1:57917924-57917943 Msa0739570:three_prime_UTR 20.0%
!!! ATTGATTTTAGTTAAAAGTG+AGG + chr5_1:57917982-57918001 Msa0739570:three_prime_UTR 20.0%
! AAGTCATTAACAAAGTTTCA+AGG - chr5_1:57914667-57914686 None:intergenic 25.0%
! AACAAGAACCTATACAATTA+TGG - chr5_1:57914710-57914729 None:intergenic 25.0%
!!! TGTATAATTTTTGTTTGTGC+AGG + chr5_1:57914906-57914925 Msa0739570:intron 25.0%
!!! ATTTTTAGAATTGTCTCTGA+GGG + chr5_1:57915236-57915255 Msa0739570:intron 25.0%
! ACGAATTCATGCAAATAAAA+TGG + chr5_1:57915338-57915357 Msa0739570:intron 25.0%
!! ATCATATTCTTTTCTTCCTT+TGG - chr5_1:57915740-57915759 None:intergenic 25.0%
! GAAGTCCTTTAACTATTATT+TGG + chr5_1:57915945-57915964 Msa0739570:CDS 25.0%
! TCCTTTAACTATTATTTGGA+GGG + chr5_1:57915949-57915968 Msa0739570:CDS 25.0%
! TCTGAAAAGTAAAAACACTT+TGG - chr5_1:57916227-57916246 None:intergenic 25.0%
!! ATTGTATTCTTTTGGTATCA+TGG + chr5_1:57916415-57916434 Msa0739570:intron 25.0%
! CTATGCTAATATATCAACAT+TGG - chr5_1:57916719-57916738 None:intergenic 25.0%
! CGAGGAATAATTTATAGATA+AGG + chr5_1:57916801-57916820 Msa0739570:intron 25.0%
! GAGATTTAATCTATCTTCAT+TGG + chr5_1:57916876-57916895 Msa0739570:intron 25.0%
!! TCATTGGAATTTTGTATGAT+AGG + chr5_1:57916892-57916911 Msa0739570:intron 25.0%
!!! GTACAGTTATTTTCTCATTT+AGG - chr5_1:57917199-57917218 None:intergenic 25.0%
!! AAACTACAATAAGTGCTTTT+TGG + chr5_1:57917360-57917379 Msa0739570:CDS 25.0%
!! ACAGTTAGAGTTTTTCATAA+GGG + chr5_1:57917436-57917455 Msa0739570:CDS 25.0%
!! TTTTCTATGTACACTTTCAA+TGG + chr5_1:57917496-57917515 Msa0739570:CDS 25.0%
! TTTCTATGTACACTTTCAAT+GGG + chr5_1:57917497-57917516 Msa0739570:CDS 25.0%
! GTAAGTTAGATTACTTCTAT+TGG + chr5_1:57917600-57917619 Msa0739570:CDS 25.0%
!! TTTTTCTTGTCTTATCAATG+AGG + chr5_1:57917657-57917676 Msa0739570:CDS 25.0%
! TATTTAGTATGTGTTTGGTT+TGG + chr5_1:57917929-57917948 Msa0739570:three_prime_UTR 25.0%
TTACAGCAACAAAATACTAG+TGG - chr5_1:57914561-57914580 None:intergenic 30.0%
TTCTGCAACCATAATTGTAT+AGG + chr5_1:57914699-57914718 Msa0739570:intron 30.0%
TGCTGAAAGAATATGTGTTA+TGG + chr5_1:57914938-57914957 Msa0739570:CDS 30.0%
GCTGAAAGAATATGTGTTAT+GGG + chr5_1:57914939-57914958 Msa0739570:CDS 30.0%
TACCATAGTTACCAACTTTA+TGG + chr5_1:57915025-57915044 Msa0739570:CDS 30.0%
ACCATAGTTACCAACTTTAT+GGG + chr5_1:57915026-57915045 Msa0739570:CDS 30.0%
! AAATTTTACCACTGTAGCTA+TGG - chr5_1:57915135-57915154 None:intergenic 30.0%
! CTCAGAGACAATTCTAAAAA+TGG - chr5_1:57915237-57915256 None:intergenic 30.0%
!!! CATTTTTAGAATTGTCTCTG+AGG + chr5_1:57915235-57915254 Msa0739570:intron 30.0%
!!! TTTTTAGAATTGTCTCTGAG+GGG + chr5_1:57915237-57915256 Msa0739570:intron 30.0%
TTTAAGCTATATCAGCTTAG+TGG - chr5_1:57915304-57915323 None:intergenic 30.0%
TGATATAGCTTAAACGAAAG+TGG + chr5_1:57915310-57915329 Msa0739570:intron 30.0%
GCACTTTATACAATAGCTTT+AGG + chr5_1:57915653-57915672 Msa0739570:CDS 30.0%
!! CTTTATACAATAGCTTTAGG+AGG + chr5_1:57915656-57915675 Msa0739570:CDS 30.0%
ATTTGACACAAATGATCCAA+AGG + chr5_1:57915721-57915740 Msa0739570:CDS 30.0%
!!! TATTGGATCCTTATTTTCAG+TGG + chr5_1:57915793-57915812 Msa0739570:CDS 30.0%
CAATACAACCACTGAAAATA+AGG - chr5_1:57915804-57915823 None:intergenic 30.0%
!! CTTATTTTCAGTGGTTGTAT+TGG + chr5_1:57915802-57915821 Msa0739570:CDS 30.0%
GTTTATGTTCAAGACAATGT+AGG + chr5_1:57915824-57915843 Msa0739570:CDS 30.0%
GGTTTCTTGAATCTATACAA+TGG - chr5_1:57915920-57915939 None:intergenic 30.0%
TATAGATTCAAGAAACCTCA+AGG + chr5_1:57915923-57915942 Msa0739570:CDS 30.0%
GTCCTTTAACTATTATTTGG+AGG + chr5_1:57915948-57915967 Msa0739570:CDS 30.0%
ACCCTCCAAATAATAGTTAA+AGG - chr5_1:57915953-57915972 None:intergenic 30.0%
!!! TATTTGGAGGGTTTTGTTTT+TGG + chr5_1:57915961-57915980 Msa0739570:CDS 30.0%
TTCAAGATAACCATTGAGTA+AGG - chr5_1:57916026-57916045 None:intergenic 30.0%
TCACATATACAGACAAATTC+AGG + chr5_1:57916053-57916072 Msa0739570:CDS 30.0%
ATATCTTAAATGATGCTGCA+CGG + chr5_1:57916321-57916340 Msa0739570:intron 30.0%
ATTGACACACTTATGTACAA+GGG - chr5_1:57916367-57916386 None:intergenic 30.0%
AATTGACACACTTATGTACA+AGG - chr5_1:57916368-57916387 None:intergenic 30.0%
! GTACATAAGTGTGTCAATTT+TGG + chr5_1:57916369-57916388 Msa0739570:intron 30.0%
TGATTCATTCTTCTCAAGTT+AGG + chr5_1:57916504-57916523 Msa0739570:intron 30.0%
! TGTCTTCGGACTAATATTTT+CGG + chr5_1:57916569-57916588 Msa0739570:intron 30.0%
! AATATTTTCGGATAGATGCA+TGG + chr5_1:57916581-57916600 Msa0739570:intron 30.0%
CGAAAATTACCATAATTTCG+AGG + chr5_1:57916783-57916802 Msa0739570:intron 30.0%
!! TCAAGTTGAGGAAGTTAAAA+TGG + chr5_1:57916998-57917017 Msa0739570:CDS 30.0%
ACATTCATGAACAGAAAAGT+TGG + chr5_1:57917107-57917126 Msa0739570:CDS 30.0%
! TGAGTGATTTTTCTTGCTAA+AGG - chr5_1:57917221-57917240 None:intergenic 30.0%
! CATTTTCTCTATTGTTGCAA+TGG + chr5_1:57917286-57917305 Msa0739570:CDS 30.0%
TATCGTTGAGAAAGAAAGAA+GGG + chr5_1:57917319-57917338 Msa0739570:CDS 30.0%
! GACAGTTAGAGTTTTTCATA+AGG + chr5_1:57917435-57917454 Msa0739570:CDS 30.0%
!! TAGCTTATTGGTTTCAATTG+TGG + chr5_1:57917532-57917551 Msa0739570:CDS 30.0%
ACAAAGTAAGCAAGAAAAGA+TGG + chr5_1:57917555-57917574 Msa0739570:CDS 30.0%
TTGAAGAGTAATCTTGACAA+GGG + chr5_1:57917578-57917597 Msa0739570:CDS 30.0%
CTTGTGAATGAAGTCAAAAT+TGG + chr5_1:57917743-57917762 Msa0739570:CDS 30.0%
! GCATAGAGAATCATTTTGTT+TGG + chr5_1:57917785-57917804 Msa0739570:exon 30.0%
TAGTGGTCTGGAAGAATATA+AGG - chr5_1:57914544-57914563 None:intergenic 35.0%
CTCTAACAGAACATACAACA+TGG + chr5_1:57914595-57914614 Msa0739570:exon 35.0%
TAGGTTCTTGTTGCAAGTAA+TGG + chr5_1:57914718-57914737 Msa0739570:intron 35.0%
! GCAAGTAATGGAGAGAAAAA+AGG + chr5_1:57914730-57914749 Msa0739570:CDS 35.0%
ACAAAACAAAAACTGGAGGA+TGG + chr5_1:57914797-57914816 Msa0739570:CDS 35.0%
CAAGTATGTCACTAAGTTCA+TGG - chr5_1:57914970-57914989 None:intergenic 35.0%
CATGAACTTAGTGACATACT+TGG + chr5_1:57914968-57914987 Msa0739570:CDS 35.0%
AACTTAGTGACATACTTGGT+TGG + chr5_1:57914972-57914991 Msa0739570:CDS 35.0%
!! TCCCATAAAGTTGGTAACTA+TGG - chr5_1:57915030-57915049 None:intergenic 35.0%
!! TTTCTAGCTGATGCAAAACT+TGG + chr5_1:57915080-57915099 Msa0739570:CDS 35.0%
! GCTACAGTGGTAAAATTTTC+AGG + chr5_1:57915137-57915156 Msa0739570:intron 35.0%
TACATGTGTCTCTATCGTTT+CGG + chr5_1:57915431-57915450 Msa0739570:intron 35.0%
GTAGTCAGTAACAATACTTC+AGG - chr5_1:57915476-57915495 None:intergenic 35.0%
ACAATTGTTGTGTTGCAACA+GGG + chr5_1:57915506-57915525 Msa0739570:intron 35.0%
!! TATACAATAGCTTTAGGAGG+TGG + chr5_1:57915659-57915678 Msa0739570:CDS 35.0%
GGAATAAAATCCAATGTGTC+AGG + chr5_1:57915683-57915702 Msa0739570:CDS 35.0%
AAATCCAATGTGTCAGGATT+TGG + chr5_1:57915689-57915708 Msa0739570:CDS 35.0%
ATAGTTAAAGGACTTCCTTG+AGG - chr5_1:57915941-57915960 None:intergenic 35.0%
AGATAACCATTGAGTAAGGT+AGG - chr5_1:57916022-57916041 None:intergenic 35.0%
CAATGGTTATCTTGAAGCTA+AGG + chr5_1:57916030-57916049 Msa0739570:CDS 35.0%
ATTAGTCCGAAGACAATGAA+GGG - chr5_1:57916564-57916583 None:intergenic 35.0%
TATTAGTCCGAAGACAATGA+AGG - chr5_1:57916565-57916584 None:intergenic 35.0%
AAATTGACACCTCATAGACT+CGG + chr5_1:57916685-57916704 Msa0739570:intron 35.0%
AAATTGAACGAGAATCGCAT+AGG + chr5_1:57916750-57916769 Msa0739570:intron 35.0%
AATTGAACGAGAATCGCATA+GGG + chr5_1:57916751-57916770 Msa0739570:intron 35.0%
GTAAACCAAAAGAAACACTG+TGG + chr5_1:57916850-57916869 Msa0739570:intron 35.0%
! TCTTTCCACAGTGTTTCTTT+TGG - chr5_1:57916858-57916877 None:intergenic 35.0%
! CCTTTGAGTTTGTTTCATCT+AGG - chr5_1:57916938-57916957 None:intergenic 35.0%
CCTAGATGAAACAAACTCAA+AGG + chr5_1:57916935-57916954 Msa0739570:CDS 35.0%
GATGAAACAAACTCAAAGGA+CGG + chr5_1:57916939-57916958 Msa0739570:CDS 35.0%
GTCATTGTTGAAACTAACCA+TGG - chr5_1:57916978-57916997 None:intergenic 35.0%
! TTCAACAATGACTCAAGTTG+AGG + chr5_1:57916986-57917005 Msa0739570:CDS 35.0%
TAATCAAACTCCTTCCCATT+TGG + chr5_1:57917021-57917040 Msa0739570:CDS 35.0%
AGTATGCATGTTGACCAAAT+GGG - chr5_1:57917038-57917057 None:intergenic 35.0%
GATGATGAGAAAAGCTGATA+AGG - chr5_1:57917156-57917175 None:intergenic 35.0%
TCTCATTTAGGGAAGTAAAG+AGG - chr5_1:57917187-57917206 None:intergenic 35.0%
AAAATCACTCACAATCCTCA+AGG + chr5_1:57917230-57917249 Msa0739570:CDS 35.0%
CTATCGTTGAGAAAGAAAGA+AGG + chr5_1:57917318-57917337 Msa0739570:CDS 35.0%
!!! GTACCTCAGTTTTTTCTAGT+TGG + chr5_1:57917386-57917405 Msa0739570:CDS 35.0%
AGGATGAAATCTATGAGTAC+TGG + chr5_1:57917470-57917489 Msa0739570:CDS 35.0%
GTTGAAGAGTAATCTTGACA+AGG + chr5_1:57917577-57917596 Msa0739570:CDS 35.0%
!! GAAGTCAAAATTGGTGTTGA+TGG + chr5_1:57917752-57917771 Msa0739570:CDS 35.0%
!! CAAAATTGGTGTTGATGGAA+AGG + chr5_1:57917757-57917776 Msa0739570:CDS 35.0%
!!! TGCCTCATGTTTGTTGATTT+TGG + chr5_1:57917840-57917859 Msa0739570:three_prime_UTR 35.0%
!!! GCCTCATGTTTGTTGATTTT+GGG + chr5_1:57917841-57917860 Msa0739570:three_prime_UTR 35.0%
ACCCAAAATCAACAAACATG+AGG - chr5_1:57917845-57917864 None:intergenic 35.0%
GCAACAAAATACTAGTGGTC+TGG - chr5_1:57914556-57914575 None:intergenic 40.0%
!!! CAGTTTTTGTTTTGTCAGCC+GGG - chr5_1:57914792-57914811 None:intergenic 40.0%
!!! CCAGTTTTTGTTTTGTCAGC+CGG - chr5_1:57914793-57914812 None:intergenic 40.0%
GCTGACAAAACAAAAACTGG+AGG + chr5_1:57914793-57914812 Msa0739570:CDS 40.0%
GTTGAGAGTTCCCATAAAGT+TGG - chr5_1:57915039-57915058 None:intergenic 40.0%
TGTAGCTATGGTTGCAGATA+TGG - chr5_1:57915123-57915142 None:intergenic 40.0%
AATCTCGTAACCTCAAGAGA+CGG - chr5_1:57915272-57915291 None:intergenic 40.0%
GACAATTGTTGTGTTGCAAC+AGG + chr5_1:57915505-57915524 Msa0739570:intron 40.0%
GGGTGTGTGTATGTTAACTT+TGG + chr5_1:57915526-57915545 Msa0739570:intron 40.0%
TGTCTTCTTACTTCACTGCA+TGG - chr5_1:57915581-57915600 None:intergenic 40.0%
AGATCCAAATCCTGACACAT+TGG - chr5_1:57915696-57915715 None:intergenic 40.0%
GTTCAAGACAATGTAGGAAG+AGG + chr5_1:57915830-57915849 Msa0739570:CDS 40.0%
AAGACAATGTAGGAAGAGGT+TGG + chr5_1:57915834-57915853 Msa0739570:CDS 40.0%
AGACAATGTAGGAAGAGGTT+GGG + chr5_1:57915835-57915854 Msa0739570:CDS 40.0%
AATTTCAGCAGGGACAATGT+TGG + chr5_1:57915865-57915884 Msa0739570:CDS 40.0%
!! GCAGTTGGTATTTTGCTTTG+TGG + chr5_1:57915890-57915909 Msa0739570:CDS 40.0%
!!! TGTTTTTGGCTTGGAAGAAG+AGG + chr5_1:57915975-57915994 Msa0739570:CDS 40.0%
TGAGTAAGGTAGGATCAGAA+GGG - chr5_1:57916012-57916031 None:intergenic 40.0%
TTGAGTAAGGTAGGATCAGA+AGG - chr5_1:57916013-57916032 None:intergenic 40.0%
TCTGATCCTACCTTACTCAA+TGG + chr5_1:57916013-57916032 Msa0739570:CDS 40.0%
ACGGATATTCTGTCTTGCTT+TGG + chr5_1:57916340-57916359 Msa0739570:intron 40.0%
CTAGATGCTATAGAAGAGTC+AGG - chr5_1:57916460-57916479 None:intergenic 40.0%
CTTAAGACCATAGCACTTGA+TGG + chr5_1:57916533-57916552 Msa0739570:intron 40.0%
GCATATCCCTTCATTGTCTT+CGG + chr5_1:57916555-57916574 Msa0739570:intron 40.0%
GAGTTGTTCAACGACCATTA+CGG - chr5_1:57916608-57916627 None:intergenic 40.0%
ACGGAAACAACGAAAATCCA+TGG + chr5_1:57916958-57916977 Msa0739570:CDS 40.0%
GAGTATGCATGTTGACCAAA+TGG - chr5_1:57917039-57917058 None:intergenic 40.0%
! GGTCAACATGCATACTCTTT+TGG + chr5_1:57917042-57917061 Msa0739570:CDS 40.0%
!! TGTAGCTTGCTCAATTGTGA+AGG - chr5_1:57917090-57917109 None:intergenic 40.0%
TAGGGAAGTAAAGAGGAGAA+TGG - chr5_1:57917180-57917199 None:intergenic 40.0%
AAGGACTCACAAGTCTTCAA+AGG + chr5_1:57917249-57917268 Msa0739570:CDS 40.0%
AGGACTCACAAGTCTTCAAA+GGG + chr5_1:57917250-57917269 Msa0739570:CDS 40.0%
AGTCTTCAAAGGGTAGGAAT+TGG + chr5_1:57917260-57917279 Msa0739570:CDS 40.0%
GCACCAACTAGAAAAAACTG+AGG - chr5_1:57917392-57917411 None:intergenic 40.0%
!!! CAGTTTTTTCTAGTTGGTGC+TGG + chr5_1:57917392-57917411 Msa0739570:CDS 40.0%
! GGAGAAGCTTTTGCTTATGT+TGG + chr5_1:57917413-57917432 Msa0739570:CDS 40.0%
CTCATAGATTTCATCCTCTC+AGG - chr5_1:57917467-57917486 None:intergenic 40.0%
! TATTGGTTGCTAGCAGTTCT+TGG + chr5_1:57917617-57917636 Msa0739570:CDS 40.0%
TGGCATTATAGATTGTGTGC+AGG + chr5_1:57917805-57917824 Msa0739570:three_prime_UTR 40.0%
CATTATAGATTGTGTGCAGG+AGG + chr5_1:57917808-57917827 Msa0739570:three_prime_UTR 40.0%
CCGGCTGACAAAACAAAAAC+TGG + chr5_1:57914790-57914809 Msa0739570:CDS 45.0%
CTAGCAGCAGGACTAATCTT+AGG + chr5_1:57914820-57914839 Msa0739570:CDS 45.0%
! ATGGGAACTCTCAACTTGCT+TGG + chr5_1:57915044-57915063 Msa0739570:CDS 45.0%
CAGCTAGAAAACCACCAAGA+AGG - chr5_1:57915070-57915089 None:intergenic 45.0%
ATCTGCAACCATAGCTACAG+TGG + chr5_1:57915124-57915143 Msa0739570:CDS 45.0%
GATTTGAACTCCGTCTCTTG+AGG + chr5_1:57915259-57915278 Msa0739570:intron 45.0%
! CTTCAGGTTAAAAGCGTGTC+TGG - chr5_1:57915460-57915479 None:intergenic 45.0%
CTTCTTACTTCACTGCATGG+AGG - chr5_1:57915578-57915597 None:intergenic 45.0%
CACTTGCTTGAATGCACTGA+TGG - chr5_1:57915607-57915626 None:intergenic 45.0%
CATCAGTGCATTCAAGCAAG+TGG + chr5_1:57915605-57915624 Msa0739570:CDS 45.0%
!! ACAATAGCTTTAGGAGGTGG+AGG + chr5_1:57915662-57915681 Msa0739570:CDS 45.0%
GACAATGTAGGAAGAGGTTG+GGG + chr5_1:57915836-57915855 Msa0739570:CDS 45.0%
TGGGGATATGGAATTTCAGC+AGG + chr5_1:57915854-57915873 Msa0739570:CDS 45.0%
GGGGATATGGAATTTCAGCA+GGG + chr5_1:57915855-57915874 Msa0739570:CDS 45.0%
!!! GGAGGGTTTTGTTTTTGGCT+TGG + chr5_1:57915966-57915985 Msa0739570:CDS 45.0%
AAGGTAGGATCAGAAGGGAT+AGG - chr5_1:57916007-57916026 None:intergenic 45.0%
GGATATGCCATCAAGTGCTA+TGG - chr5_1:57916543-57916562 None:intergenic 45.0%
GATAGATGCATGGACCGTAA+TGG + chr5_1:57916591-57916610 Msa0739570:intron 45.0%
!! CTAGGATTGCTGCTTTGTCA+AGG - chr5_1:57916920-57916939 None:intergenic 45.0%
TGCATGTTGACCAAATGGGA+AGG - chr5_1:57917034-57917053 None:intergenic 45.0%
AAAGCTGATAAGGATCCTGC+TGG - chr5_1:57917146-57917165 None:intergenic 45.0%
TGAAGACTTGTGAGTCCTTG+AGG - chr5_1:57917248-57917267 None:intergenic 45.0%
CTCACAAGTCTTCAAAGGGT+AGG + chr5_1:57917254-57917273 Msa0739570:CDS 45.0%
!! AATGCTGCGGTCGATTTTCG+TGG + chr5_1:57914763-57914782 Msa0739570:CDS 50.0%
TGGTAGCAGAGCTAGCTGAA+TGG - chr5_1:57915010-57915029 None:intergenic 50.0%
! CTCAACTTGCTTGGCCTTCT+TGG + chr5_1:57915053-57915072 Msa0739570:CDS 50.0%
! AACTTGCTTGGCCTTCTTGG+TGG + chr5_1:57915056-57915075 Msa0739570:CDS 50.0%
CTTACTTCACTGCATGGAGG+AGG - chr5_1:57915575-57915594 None:intergenic 50.0%
GTAGGAAGAGGTTGGGGATA+TGG + chr5_1:57915842-57915861 Msa0739570:CDS 50.0%
!! GGGACAATGTTGGTAGCAGT+TGG + chr5_1:57915875-57915894 Msa0739570:CDS 50.0%
GACTAGTAGCCGAGTCTATG+AGG - chr5_1:57916697-57916716 None:intergenic 50.0%
GGATCACTAGAGATTCCAGC+AGG + chr5_1:57917128-57917147 Msa0739570:CDS 50.0%
!! TCATAAGGGAAGCACCTGAG+AGG + chr5_1:57917450-57917469 Msa0739570:CDS 50.0%
AGGCACAGCAGACAATGCTG+CGG + chr5_1:57914750-57914769 Msa0739570:CDS 55.0%
!! GGTCGATTTTCGTGGTCACC+CGG + chr5_1:57914771-57914790 Msa0739570:CDS 55.0%
!! CATGGAGGAGGTGTCATGCT+AGG - chr5_1:57915563-57915582 None:intergenic 55.0%
ACTGGAGGATGGCTAGCAGC+AGG + chr5_1:57914808-57914827 Msa0739570:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 57914505 57918051 57914505 ID=Msa0739570;Name=Msa0739570
chr5_1 mRNA 57914505 57918051 57914505 ID=Msa0739570-mRNA-1;Parent=Msa0739570;Name=Msa0739570-mRNA-1;_AED=0.01;_eAED=0.01;_QI=109|1|1|1|1|1|5|261|588
chr5_1 exon 57914505 57914616 57914505 ID=Msa0739570-mRNA-1:exon:16469;Parent=Msa0739570-mRNA-1
chr5_1 exon 57914721 57914841 57914721 ID=Msa0739570-mRNA-1:exon:16470;Parent=Msa0739570-mRNA-1
chr5_1 exon 57914928 57915145 57914928 ID=Msa0739570-mRNA-1:exon:16471;Parent=Msa0739570-mRNA-1
chr5_1 exon 57915527 57916074 57915527 ID=Msa0739570-mRNA-1:exon:16472;Parent=Msa0739570-mRNA-1
chr5_1 exon 57916914 57918051 57916914 ID=Msa0739570-mRNA-1:exon:16473;Parent=Msa0739570-mRNA-1
chr5_1 five_prime_UTR 57914505 57914613 57914505 ID=Msa0739570-mRNA-1:five_prime_utr;Parent=Msa0739570-mRNA-1
chr5_1 CDS 57914614 57914616 57914614 ID=Msa0739570-mRNA-1:cds;Parent=Msa0739570-mRNA-1
chr5_1 CDS 57914721 57914841 57914721 ID=Msa0739570-mRNA-1:cds;Parent=Msa0739570-mRNA-1
chr5_1 CDS 57914928 57915145 57914928 ID=Msa0739570-mRNA-1:cds;Parent=Msa0739570-mRNA-1
chr5_1 CDS 57915527 57916074 57915527 ID=Msa0739570-mRNA-1:cds;Parent=Msa0739570-mRNA-1
chr5_1 CDS 57916914 57917790 57916914 ID=Msa0739570-mRNA-1:cds;Parent=Msa0739570-mRNA-1
chr5_1 three_prime_UTR 57917791 57918051 57917791 ID=Msa0739570-mRNA-1:three_prime_utr;Parent=Msa0739570-mRNA-1
Gene Sequence

>Msa0739570

ATGGTTCTTGTTGCAAGTAATGGAGAGAAAAAAGGCACAGCAGACAATGCTGCGGTCGATTTTCGTGGTCACCCGGCTGACAAAACAAAAACTGGAGGATGGCTAGCAGCAGGACTAATCTTAGGTACTGAACTTGCTGAAAGAATATGTGTTATGGGAATTTCCATGAACTTAGTGACATACTTGGTTGGAGATTTACATCTCCATTCAGCTAGCTCTGCTACCATAGTTACCAACTTTATGGGAACTCTCAACTTGCTTGGCCTTCTTGGTGGTTTTCTAGCTGATGCAAAACTTGGCAGATACTTAACTGTTGCCATATCTGCAACCATAGCTACAGTGGGTGTGTGTATGTTAACTTTGGCTACAACAATTCCTAGCATGACACCTCCTCCATGCAGTGAAGTAAGAAGACAACACCATCAGTGCATTCAAGCAAGTGGCAAACAGTTAGCACTTCTCTTTGCAGCACTTTATACAATAGCTTTAGGAGGTGGAGGAATAAAATCCAATGTGTCAGGATTTGGATCTGATCAATTTGACACAAATGATCCAAAGGAAGAAAAGAATATGATATTTTTCTTCAACAGATTCTACTTTTTTATAAGTATTGGATCCTTATTTTCAGTGGTTGTATTGGTTTATGTTCAAGACAATGTAGGAAGAGGTTGGGGATATGGAATTTCAGCAGGGACAATGTTGGTAGCAGTTGGTATTTTGCTTTGTGGTACTCCATTGTATAGATTCAAGAAACCTCAAGGAAGTCCTTTAACTATTATTTGGAGGGTTTTGTTTTTGGCTTGGAAGAAGAGGACTCTTCCTATCCCTTCTGATCCTACCTTACTCAATGGTTATCTTGAAGCTAAGGTCACATATACAGACAAATTCAGGTACCTTGACAAAGCAGCAATCCTAGATGAAACAAACTCAAAGGACGGAAACAACGAAAATCCATGGTTAGTTTCAACAATGACTCAAGTTGAGGAAGTTAAAATGGTAATCAAACTCCTTCCCATTTGGTCAACATGCATACTCTTTTGGACAGTTTATTCTCAAATGAACACCTTCACAATTGAGCAAGCTACATTCATGAACAGAAAAGTTGGATCACTAGAGATTCCAGCAGGATCCTTATCAGCTTTTCTCATCATCACCATTCTCCTCTTTACTTCCCTAAATGAGAAAATAACTGTACCTTTAGCAAGAAAAATCACTCACAATCCTCAAGGACTCACAAGTCTTCAAAGGGTAGGAATTGGACTCATTTTCTCTATTGTTGCAATGGTAGTTTCTGCTATCGTTGAGAAAGAAAGAAGGGACAATGCAGTTAAAAAACAAACTACAATAAGTGCTTTTTGGCTTGTACCTCAGTTTTTTCTAGTTGGTGCTGGAGAAGCTTTTGCTTATGTTGGACAGTTAGAGTTTTTCATAAGGGAAGCACCTGAGAGGATGAAATCTATGAGTACTGGTCTTTTTCTATGTACACTTTCAATGGGATATTTTGTTAGTAGCTTATTGGTTTCAATTGTGGACAAAGTAAGCAAGAAAAGATGGTTGAAGAGTAATCTTGACAAGGGTAAGTTAGATTACTTCTATTGGTTGCTAGCAGTTCTTGGAGTGCTGAATTTTTTACTTTTTCTTGTCTTATCAATGAGGCATCAATACAAAGTTCAACACAACAATATTGAGAGTAATGACAATGTAGAGAAAGAGCTTGTGCTTGTGAATGAAGTCAAAATTGGTGTTGATGGAAAGGAAGAAGCATAG
Protein sequence

>Msa0739570

MVLVASNGEKKGTADNAAVDFRGHPADKTKTGGWLAAGLILGTELAERICVMGISMNLVTYLVGDLHLHSASSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAISATIATVGVCMLTLATTIPSMTPPPCSEVRRQHHQCIQASGKQLALLFAALYTIALGGGGIKSNVSGFGSDQFDTNDPKEEKNMIFFFNRFYFFISIGSLFSVVVLVYVQDNVGRGWGYGISAGTMLVAVGILLCGTPLYRFKKPQGSPLTIIWRVLFLAWKKRTLPIPSDPTLLNGYLEAKVTYTDKFRYLDKAAILDETNSKDGNNENPWLVSTMTQVEEVKMVIKLLPIWSTCILFWTVYSQMNTFTIEQATFMNRKVGSLEIPAGSLSAFLIITILLFTSLNEKITVPLARKITHNPQGLTSLQRVGIGLIFSIVAMVVSAIVEKERRDNAVKKQTTISAFWLVPQFFLVGAGEAFAYVGQLEFFIREAPERMKSMSTGLFLCTLSMGYFVSSLLVSIVDKVSKKRWLKSNLDKGKLDYFYWLLAVLGVLNFLLFLVLSMRHQYKVQHNNIESNDNVEKELVLVNEVKIGVDGKEEA*