AlfalfaGEDB | Msa1069300

M. sativa cultivar zhongmu-4 / Msa1069300

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006996 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840
PFAM: PF05701.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069300	XP_003624388.2	92.540	630	16	1	8	606	1	630	0.0	1130

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069300	sp\|Q9C9N6\|PMI2_ARATH	39.967	603	330	11	11	600	17	600	1.21e-97	313

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069300	G7KV75	92.540	630	16	1	8	606	1	630	0.0	1130

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003470	Msa1069300	0.818291	2.116792e-52	-8.615850e-47
Msa0004350	Msa1069300	0.843055	1.772535e-58	-8.615850e-47
Msa0006700	Msa1069300	0.862533	4.738163e-64	-8.615850e-47
Msa0007230	Msa1069300	0.857525	1.538318e-62	-8.615850e-47
Msa0007450	Msa1069300	0.802655	5.061540e-49	-8.615850e-47
Msa0008330	Msa1069300	0.831332	1.772168e-55	-8.615850e-47
Msa0008850	Msa1069300	0.858594	7.400640e-63	-8.615850e-47
Msa0011720	Msa1069300	0.859543	3.845816e-63	-8.615850e-47
Msa0012440	Msa1069300	0.830586	2.701079e-55	-8.615850e-47
Msa0012740	Msa1069300	0.815452	9.180415e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069300	MtrunA17_Chr7g0251231	92.540	630	16	1	8	606	1	630	0.0	1130
Msa1069300	MtrunA17_Chr3g0102681	28.833	600	369	14	31	603	69	637	4.64e-22	100
Msa1069300	MtrunA17_Chr5g0446731	28.797	507	316	12	112	601	164	642	1.91e-13	73.6
Msa1069300	MtrunA17_Chr3g0078801	27.404	624	389	16	14	601	47	642	2.37e-11	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069300	AT1G66840.2	39.967	603	330	11	11	600	17	600	1.23e-98	313
Msa1069300	AT1G66840.1	39.967	603	330	11	11	600	17	600	1.23e-98	313
Msa1069300	AT5G38150.1	38.879	571	317	8	32	597	33	576	2.59e-83	272
Msa1069300	AT5G55860.1	27.660	611	386	14	22	603	52	635	1.98e-19	92.8
Msa1069300	AT2G26570.1	26.150	413	269	9	112	504	294	690	6.19e-11	65.9
Msa1069300	AT2G26570.2	26.150	413	269	9	112	504	294	690	6.19e-11	65.9

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Find 83 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTCAACATGGTGCTA+TGG	0.555928	7_2:+64842806	Msa1069300:CDS
AAAGAAAGTTATCCCGAATT+TGG	0.197738	7_2:+64844276	Msa1069300:CDS
AAATTTCTCTTCTATGATTG+AGG	0.422441	7_2:+64842725	Msa1069300:CDS
AACAACTGAAGCTTTAGCTT+TGG	0.339949	7_2:+64843781	Msa1069300:CDS
AACAGCAGGGGAAAATAGTG+AGG	0.626121	7_2:+64844504	Msa1069300:three_prime_UTR
AACATGGTGCTATGGTTGTA+AGG	0.493840	7_2:+64842814	Msa1069300:CDS
AACCGTAAAGGAGGAACTTG+AGG	0.624780	7_2:+64843364	Msa1069300:CDS
AACTTCATATCTAATATGCG+AGG	0.655272	7_2:+64844431	Msa1069300:three_prime_UTR
AAGAAGATATGAAACTCTTA+TGG	0.337756	7_2:-64844629	None:intergenic
AAGAAGGGAAAAGGTCAACA+TGG	0.660376	7_2:+64842798	Msa1069300:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATGGATGATACTAAAGT+TGG	+	chr7_2:64842222-64842241	Msa1069300:CDS	30.0%
TTCATTGAAGAAAACTCAGA+TGG	+	chr7_2:64842326-64842345	Msa1069300:intron	30.0%
GTTGCAGATTCAATTGAATT+TGG	+	chr7_2:64843241-64843260	Msa1069300:CDS	30.0%
ATTGGAAGGAAGTTTAAGAA+AGG	+	chr7_2:64843310-64843329	Msa1069300:CDS	30.0%
TTGGAAGGAAGTTTAAGAAA+GGG	+	chr7_2:64843311-64843330	Msa1069300:CDS	30.0%
CTTGAAGAAAAACGATTCAT+CGG	+	chr7_2:64843493-64843512	Msa1069300:CDS	30.0%
GGTTCAAAATCTCAATTCAA+AGG	+	chr7_2:64843514-64843533	Msa1069300:CDS	30.0%
AGAAACAGATGAAGCTAAAA+TGG	+	chr7_2:64843637-64843656	Msa1069300:CDS	30.0%
TGTTAAAGCTCTTTCTTTCA+TGG	-	chr7_2:64843834-64843853	None:intergenic	30.0%
TTTCTCTTCTTAAGAGTGAA+AGG	-	chr7_2:64844259-64844278	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	64842145	64844714	64842145	ID=Msa1069300;Name=Msa1069300
chr7_2	mRNA	64842145	64844714	64842145	ID=Msa1069300-mRNA-1;Parent=Msa1069300;Name=Msa1069300-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0\|0.33\|1\|0\|0.33\|3\|372\|606
chr7_2	exon	64842145	64842153	64842145	ID=Msa1069300-mRNA-1:exon:13540;Parent=Msa1069300-mRNA-1
chr7_2	exon	64842213	64842272	64842213	ID=Msa1069300-mRNA-1:exon:13541;Parent=Msa1069300-mRNA-1
chr7_2	exon	64842591	64844714	64842591	ID=Msa1069300-mRNA-1:exon:13542;Parent=Msa1069300-mRNA-1
chr7_2	CDS	64842145	64842153	64842145	ID=Msa1069300-mRNA-1:cds;Parent=Msa1069300-mRNA-1
chr7_2	CDS	64842213	64842272	64842213	ID=Msa1069300-mRNA-1:cds;Parent=Msa1069300-mRNA-1
chr7_2	CDS	64842591	64844342	64842591	ID=Msa1069300-mRNA-1:cds;Parent=Msa1069300-mRNA-1
chr7_2	three_prime_UTR	64844343	64844714	64844343	ID=Msa1069300-mRNA-1:three_prime_utr;Parent=Msa1069300-mRNA-1

Gene Sequence

>Msa1069300

ATGGTGATTTTTTGGCAAAAGATGGATGATACTAAAGTTGGTATGAGAAGAGTTAGATCAGTTAAAGATAACCCTACTTCAAGAACAAGAGAACTACACCAAGCTAGAAGAGACATTGGAAGGTACAAAGAGAGTAGATGGACAGCAGAATCTGCAAAATCTCAAGCTGAATCTGAGCTTTTAAATGCTAAAAAGACAGCGAAAAATTTCTCTTCTATGATTGAGGAATCAAGTTACAAGGCTAAGGCGAAAATGAAGGACATAGAAACACTGGAGAAGAAGGGAAAAGGTCAACATGGTGCTATGGTTGTAAGGAGGAATGAGAATTATGAGTATGCACAAGTGATGAGAGAATTGGAATATCTCAAAAAGGAATTGTTTAAGCTAAAGCTTGACGTGGCTTCTGTTTTGCAACAGAAATCGCGAGCCGAGAAAGAAATCGATGCATCAAGCTCGAAGATGATCGATTGTTCAAGAAAAGAAGAAGTACTTAGGAAAGAGATTGAAGAAGCCAATGAAGAACAAGTACTTGCTGAATTGGCCAGGATTGAGGCTTTGAAAGAGTTGGAGGATATTAGAGTTCAAAGAGAAAGAGAGGCAAATGAGTTTTCATTCAAATTGGAAAACACAAGAAAAAAGTTGAAGGAGGCCACAAAAGAGATAGAAAAATCAAAGGAACTTGAAATGAAATTAGCTATGACAGTTTCAGATGTTGATCTGTTGCAGATTCAATTGAATTTGGTCAAAGAAATGGAGAAAAGGGTTCAAGGAGATGAAAGTGTGAAACTATTGGAAGGAAGTTTAAGAAAGGGTGACGAATCAGGAGACTCTACCGAGTTACAAACCGTAAAGGAGGAACTTGAGGCGGCAACGAAAGAATTAGCTTTGATTAGAGATGAAGGTTTTCAGTTTATGGCTTCTATGGATGTTATAAGAAACGAGCTGAAGCATGTAACTAAGGAAATAGCTCGCTTGAAGAAAAACGATTCATCGGTTCAAAATCTCAATTCAAAGGTTCTAAGAACAAAATCTAAGCTAGAAGCTGCATCTGCTGCAGAGGAAAAAGCAAGATCATTAGTAATTAGTCTATCTCATTCTCTTGAGACTCTGAAGAAAGAAACAGATGAAGCTAAAATGGAAAAAGAGCTCATATCTCAAGATATTATAACAACTAAGTTGGAAATTGAAAAAACTGAGTTTGAGATTGATACGAGTGAGGAAAAATTGCAAGGTGTTATGAAAGAGTTAGAAGAAGCAAAAACAACTGAAGCTTTAGCTTTGGAGAAGCTTAAAACACTTTCTGAGACAACCATGAAAGAAAGAGCTTTAACAGCAAAACATAGTTCATCGATTACTATCTCCAAATTTGAATACGAGTATCTAACTAATCATGCAGCTGCAGCAGAAGAACTTGCTGATAAAAAAGTTGCGGCAGCTGAGGCATGGATTGAAGCGCTCAAGGCGAGTGAGAAGGAAATACTACTGGAAACAAAAATAGTTCAAAGAGAACTCAAAGAAAACATTTTGAAGGAAGAGAGGGAGGTTTACATCAAAGAGAAGATGGCTGCAAGAAGAGTTAGTAGTGAGGAGTTTGATAGAACAAGAAAACGCGAGAAGGGTTCGTCGCAGAGAGCTATTTCTAGAAAGAGTATTAAATCAAATGGAAGTATGACTCCTGCTAAAAGAATCAAGTTTCAGAAGTCTGCTGCTTCACCCGCACCTCGGCACATTAGTCCTTTCACTCTTAAGAAGAGAAAGAAAGTTATCCCGAATTTGGCAAAGTTATTCAGTAGCAAGAAAAACACTATGCCTAAAGAGTAA

Protein sequence

>Msa1069300

MVIFWQKMDDTKVGMRRVRSVKDNPTSRTRELHQARRDIGRYKESRWTAESAKSQAESELLNAKKTAKNFSSMIEESSYKAKAKMKDIETLEKKGKGQHGAMVVRRNENYEYAQVMRELEYLKKELFKLKLDVASVLQQKSRAEKEIDASSSKMIDCSRKEEVLRKEIEEANEEQVLAELARIEALKELEDIRVQREREANEFSFKLENTRKKLKEATKEIEKSKELEMKLAMTVSDVDLLQIQLNLVKEMEKRVQGDESVKLLEGSLRKGDESGDSTELQTVKEELEAATKELALIRDEGFQFMASMDVIRNELKHVTKEIARLKKNDSSVQNLNSKVLRTKSKLEAASAAEEKARSLVISLSHSLETLKKETDEAKMEKELISQDIITTKLEIEKTEFEIDTSEEKLQGVMKELEEAKTTEALALEKLKTLSETTMKERALTAKHSSSITISKFEYEYLTNHAAAAEELADKKVAAAEAWIEALKASEKEILLETKIVQRELKENILKEEREVYIKEKMAARRVSSEEFDRTRKREKGSSQRAISRKSIKSNGSMTPAKRIKFQKSAASPAPRHISPFTLKKRKKVIPNLAKLFSSKKNTMPKE*