AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1069300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1069300 MtrunA17_Chr7g0251231 92.540 630 16 1 8 606 1 630 0.0 1130
Msa1069300 MtrunA17_Chr3g0102681 28.833 600 369 14 31 603 69 637 4.64e-22 100
Msa1069300 MtrunA17_Chr5g0446731 28.797 507 316 12 112 601 164 642 1.91e-13 73.6
Msa1069300 MtrunA17_Chr3g0078801 27.404 624 389 16 14 601 47 642 2.37e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1069300 AT1G66840.2 39.967 603 330 11 11 600 17 600 1.23e-98 313
Msa1069300 AT1G66840.1 39.967 603 330 11 11 600 17 600 1.23e-98 313
Msa1069300 AT5G38150.1 38.879 571 317 8 32 597 33 576 2.59e-83 272
Msa1069300 AT5G55860.1 27.660 611 386 14 22 603 52 635 1.98e-19 92.8
Msa1069300 AT2G26570.1 26.150 413 269 9 112 504 294 690 6.19e-11 65.9
Msa1069300 AT2G26570.2 26.150 413 269 9 112 504 294 690 6.19e-11 65.9

Find 83 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGATACTCGTATTCAAATT+TGG 0.191661 7_2:-64843882 None:intergenic
CGCCTCAAGTTCCTCCTTTA+CGG 0.197031 7_2:-64843366 None:intergenic
AAAGAAAGTTATCCCGAATT+TGG 0.197738 7_2:+64844276 Msa1069300:CDS
CTGAATAACTTTGCCAAATT+CGG 0.202551 7_2:-64844289 None:intergenic
TGTTAAAGCTCTTTCTTTCA+TGG 0.217709 7_2:-64843831 None:intergenic
GTTGCAGATTCAATTGAATT+TGG 0.253403 7_2:+64843241 Msa1069300:CDS
AGAAACAGATGAAGCTAAAA+TGG 0.255073 7_2:+64843637 Msa1069300:CDS
GGGCGTTGAATTTACTCTTT+AGG 0.305728 7_2:-64844331 None:intergenic
TGATGCATCGATTTCTTTCT+CGG 0.311118 7_2:-64842949 None:intergenic
AGTTCTCTTGTTCTTGAAGT+AGG 0.315905 7_2:-64842594 None:intergenic
ATTGAATTTGGTCAAAGAAA+TGG 0.316878 7_2:+64843253 Msa1069300:CDS
TGAATAACTTTGCCAAATTC+GGG 0.330803 7_2:-64844288 None:intergenic
AAGAAGATATGAAACTCTTA+TGG 0.337756 7_2:-64844629 None:intergenic
AACAACTGAAGCTTTAGCTT+TGG 0.339949 7_2:+64843781 Msa1069300:CDS
AGCAAGTACTTGTTCTTCAT+TGG 0.359144 7_2:-64843033 None:intergenic
AGAATTGGAATATCTCAAAA+AGG 0.374578 7_2:+64842872 Msa1069300:CDS
AGAACAAGTACTTGCTGAAT+TGG 0.382678 7_2:+64843040 Msa1069300:CDS
TTAAGAAAGGGTGACGAATC+AGG 0.386265 7_2:+64843323 Msa1069300:CDS
AGAAAGAGTATTAAATCAAA+TGG 0.421669 7_2:+64844163 Msa1069300:CDS
AAATTTCTCTTCTATGATTG+AGG 0.422441 7_2:+64842725 Msa1069300:CDS
TGGTCAAAGAAATGGAGAAA+AGG 0.424730 7_2:+64843261 Msa1069300:CDS
CTCCTTTACGGTTTGTAACT+CGG 0.426077 7_2:-64843354 None:intergenic
AGATGAAAGTGTGAAACTAT+TGG 0.426555 7_2:+64843292 Msa1069300:CDS
GTTCTCTTGTTCTTGAAGTA+GGG 0.431248 7_2:-64842593 None:intergenic
GAAGGTACAAAGAGAGTAGA+TGG 0.434441 7_2:+64842640 Msa1069300:CDS
TTCCAATGTCTCTTCTAGCT+TGG 0.442664 7_2:-64842620 None:intergenic
TGCACAAGTGATGAGAGAAT+TGG 0.443791 7_2:+64842857 Msa1069300:CDS
CATAGAAACACTGGAGAAGA+AGG 0.444769 7_2:+64842782 Msa1069300:CDS
TTAGCTTTGATTAGAGATGA+AGG 0.446414 7_2:+64843401 Msa1069300:CDS
TGAGGCTTTGAAAGAGTTGG+AGG 0.446916 7_2:+64843070 Msa1069300:CDS
GGTCAAAGAAATGGAGAAAA+GGG 0.450694 7_2:+64843262 Msa1069300:CDS
AGATATTATAACAACTAAGT+TGG 0.460017 7_2:+64843679 Msa1069300:CDS
ATTGGAAGGAAGTTTAAGAA+AGG 0.468539 7_2:+64843310 Msa1069300:CDS
TGCTGAATTGGCCAGGATTG+AGG 0.469806 7_2:+64843052 Msa1069300:CDS
GGACTAATGTGCCGAGGTGC+GGG 0.475186 7_2:-64844235 None:intergenic
TTTCTCTTCTTAAGAGTGAA+AGG 0.481141 7_2:-64844256 None:intergenic
GATTGAGGCTTTGAAAGAGT+TGG 0.490184 7_2:+64843067 Msa1069300:CDS
CGAGCTGAAGCATGTAACTA+AGG 0.490959 7_2:+64843460 Msa1069300:CDS
AACATGGTGCTATGGTTGTA+AGG 0.493840 7_2:+64842814 Msa1069300:CDS
CTCTTTCAAAGCCTCAATCC+TGG 0.493907 7_2:-64843063 None:intergenic
GAAATGGAGAAAAGGGTTCA+AGG 0.496156 7_2:+64843269 Msa1069300:CDS
AAGTACTTGCTGAATTGGCC+AGG 0.505239 7_2:+64843045 Msa1069300:CDS
CAAGAAAAGAAGAAGTACTT+AGG 0.507607 7_2:+64842994 Msa1069300:CDS
TTGGAAGGAAGTTTAAGAAA+GGG 0.508282 7_2:+64843311 Msa1069300:CDS
AAGATGGATGATACTAAAGT+TGG 0.511606 7_2:+64842222 Msa1069300:CDS
GGTTCAAAATCTCAATTCAA+AGG 0.530696 7_2:+64843514 Msa1069300:CDS
AAGTTGCGGCAGCTGAGGCA+TGG 0.536231 7_2:+64843945 Msa1069300:CDS
ACACTGGAGAAGAAGGGAAA+AGG 0.536964 7_2:+64842789 Msa1069300:CDS
CACCAAGCTAGAAGAGACAT+TGG 0.548216 7_2:+64842618 Msa1069300:CDS
GAGTGAGAAGGAAATACTAC+TGG 0.549385 7_2:+64843985 Msa1069300:CDS
ATATCTAATATGCGAGGTGA+AGG 0.550812 7_2:+64844437 Msa1069300:three_prime_UTR
GGTTTACATCAAAGAGAAGA+TGG 0.551787 7_2:+64844063 Msa1069300:CDS
AAAAGGTCAACATGGTGCTA+TGG 0.555928 7_2:+64842806 Msa1069300:CDS
TAGAGTTCAAAGAGAAAGAG+AGG 0.559762 7_2:+64843097 Msa1069300:CDS
CAAGGCTAAGGCGAAAATGA+AGG 0.564183 7_2:+64842758 Msa1069300:CDS
TTGTGCATGCGATTGTAGAC+CGG 0.566209 7_2:-64844366 None:intergenic
AATGAAGGACATAGAAACAC+TGG 0.566930 7_2:+64842773 Msa1069300:CDS
GGAATCAAGTTACAAGGCTA+AGG 0.570445 7_2:+64842746 Msa1069300:CDS
AGAACAAGAAAACGCGAGAA+GGG 0.571742 7_2:+64844118 Msa1069300:CDS
GATTGAGGAATCAAGTTACA+AGG 0.579639 7_2:+64842740 Msa1069300:CDS
GGCATGGATTGAAGCGCTCA+AGG 0.579700 7_2:+64843961 Msa1069300:CDS
AGAAGCTGCATCTGCTGCAG+AGG 0.583596 7_2:+64843559 Msa1069300:CDS
TACCGAGTTACAAACCGTAA+AGG 0.586528 7_2:+64843352 Msa1069300:CDS
TAGAACAAGAAAACGCGAGA+AGG 0.587688 7_2:+64844117 Msa1069300:CDS
GAAAGTGTGAAACTATTGGA+AGG 0.594809 7_2:+64843296 Msa1069300:CDS
AGGACTAATGTGCCGAGGTG+CGG 0.603591 7_2:-64844236 None:intergenic
GTTTAAGCTAAAGCTTGACG+TGG 0.614923 7_2:+64842899 Msa1069300:CDS
AACCGTAAAGGAGGAACTTG+AGG 0.624780 7_2:+64843364 Msa1069300:CDS
AACAGCAGGGGAAAATAGTG+AGG 0.626121 7_2:+64844504 Msa1069300:three_prime_UTR
AGCGCTCAAGGCGAGTGAGA+AGG 0.630165 7_2:+64843973 Msa1069300:CDS
ATAGAAACACTGGAGAAGAA+GGG 0.633733 7_2:+64842783 Msa1069300:CDS
CGTAAAGGAGGAACTTGAGG+CGG 0.638927 7_2:+64843367 Msa1069300:CDS
AAGCTAGAAGAGACATTGGA+AGG 0.645006 7_2:+64842622 Msa1069300:CDS
CGAGTTACAAACCGTAAAGG+AGG 0.647932 7_2:+64843355 Msa1069300:CDS
GTTTGAGATTGATACGAGTG+AGG 0.648413 7_2:+64843718 Msa1069300:CDS
AACTTCATATCTAATATGCG+AGG 0.655272 7_2:+64844431 Msa1069300:three_prime_UTR
AAGAAGGGAAAAGGTCAACA+TGG 0.660376 7_2:+64842798 Msa1069300:CDS
TAGACCGGAATTTAAAACAA+GGG 0.660736 7_2:-64844351 None:intergenic
GTGAAAGGACTAATGTGCCG+AGG 0.674695 7_2:-64844241 None:intergenic
CTGCTGCTTCACCCGCACCT+CGG 0.677290 7_2:+64844224 Msa1069300:CDS
TGCAAGAAGAGTTAGTAGTG+AGG 0.677779 7_2:+64844087 Msa1069300:CDS
GTAGACCGGAATTTAAAACA+AGG 0.682646 7_2:-64844352 None:intergenic
ATGGTGCTATGGTTGTAAGG+AGG 0.699881 7_2:+64842817 Msa1069300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTTGAACTTAAAAAATAAT+TGG + chr7_2:64844649-64844668 Msa1069300:three_prime_UTR 15.0%
!!! TTATTAGTCTATATGATGAT+AGG + chr7_2:64842274-64842293 Msa1069300:intron 20.0%
!!! CTATCTTTTGTTATAGAAAT+AGG + chr7_2:64842433-64842452 Msa1069300:intron 20.0%
!!! TTTGTTATAGAAATAGGTTA+TGG + chr7_2:64842439-64842458 Msa1069300:intron 20.0%
!! TTGTATATGCATTATTATTG+TGG + chr7_2:64842507-64842526 Msa1069300:intron 20.0%
!!! AAATGAGTTTTCATTCAAAT+TGG + chr7_2:64843121-64843140 Msa1069300:CDS 20.0%
!! AAAAGAGATAGAAAAATCAA+AGG + chr7_2:64843175-64843194 Msa1069300:CDS 20.0%
!! AGATATTATAACAACTAAGT+TGG + chr7_2:64843679-64843698 Msa1069300:CDS 20.0%
!!! AGAAAGAGTATTAAATCAAA+TGG + chr7_2:64844163-64844182 Msa1069300:CDS 20.0%
!! TAAATTCATTCCTTCAGTTT+TGG + chr7_2:64842196-64842215 Msa1069300:intron 25.0%
! TATATGATGATAGGAATCAT+AGG + chr7_2:64842283-64842302 Msa1069300:intron 25.0%
! AAATTTCTCTTCTATGATTG+AGG + chr7_2:64842725-64842744 Msa1069300:CDS 25.0%
! AGAATTGGAATATCTCAAAA+AGG + chr7_2:64842872-64842891 Msa1069300:CDS 25.0%
! AAACACAAGAAAAAAGTTGA+AGG + chr7_2:64843145-64843164 Msa1069300:CDS 25.0%
!! TGATTTTTCTATCTCTTTTG+TGG - chr7_2:64843174-64843193 None:intergenic 25.0%
! ATTGAATTTGGTCAAAGAAA+TGG + chr7_2:64843253-64843272 Msa1069300:CDS 25.0%
! TAGATACTCGTATTCAAATT+TGG - chr7_2:64843885-64843904 None:intergenic 25.0%
!! ACTCAAAGAAAACATTTTGA+AGG + chr7_2:64844030-64844049 Msa1069300:CDS 25.0%
!!! ATTGCTAAATTTTAACAGCA+GGG + chr7_2:64844491-64844510 Msa1069300:three_prime_UTR 25.0%
! AAGAAGATATGAAACTCTTA+TGG - chr7_2:64844632-64844651 None:intergenic 25.0%
AAGATGGATGATACTAAAGT+TGG + chr7_2:64842222-64842241 Msa1069300:CDS 30.0%
TTCATTGAAGAAAACTCAGA+TGG + chr7_2:64842326-64842345 Msa1069300:intron 30.0%
!! CAAGAAAAGAAGAAGTACTT+AGG + chr7_2:64842994-64843013 Msa1069300:CDS 30.0%
GTTGCAGATTCAATTGAATT+TGG + chr7_2:64843241-64843260 Msa1069300:CDS 30.0%
! AGATGAAAGTGTGAAACTAT+TGG + chr7_2:64843292-64843311 Msa1069300:CDS 30.0%
ATTGGAAGGAAGTTTAAGAA+AGG + chr7_2:64843310-64843329 Msa1069300:CDS 30.0%
TTGGAAGGAAGTTTAAGAAA+GGG + chr7_2:64843311-64843330 Msa1069300:CDS 30.0%
!! TTAGCTTTGATTAGAGATGA+AGG + chr7_2:64843401-64843420 Msa1069300:CDS 30.0%
! AGATGAAGGTTTTCAGTTTA+TGG + chr7_2:64843415-64843434 Msa1069300:CDS 30.0%
! TTTTCAGTTTATGGCTTCTA+TGG + chr7_2:64843424-64843443 Msa1069300:CDS 30.0%
CTTGAAGAAAAACGATTCAT+CGG + chr7_2:64843493-64843512 Msa1069300:CDS 30.0%
GGTTCAAAATCTCAATTCAA+AGG + chr7_2:64843514-64843533 Msa1069300:CDS 30.0%
AGAAACAGATGAAGCTAAAA+TGG + chr7_2:64843637-64843656 Msa1069300:CDS 30.0%
TGTTAAAGCTCTTTCTTTCA+TGG - chr7_2:64843834-64843853 None:intergenic 30.0%
! ACTTGCTGATAAAAAAGTTG+CGG + chr7_2:64843931-64843950 Msa1069300:CDS 30.0%
!! AAAACATTTTGAAGGAAGAG+AGG + chr7_2:64844038-64844057 Msa1069300:CDS 30.0%
!! AAACATTTTGAAGGAAGAGA+GGG + chr7_2:64844039-64844058 Msa1069300:CDS 30.0%
! TGAAACTTGATTCTTTTAGC+AGG - chr7_2:64844199-64844218 None:intergenic 30.0%
TTTCTCTTCTTAAGAGTGAA+AGG - chr7_2:64844259-64844278 None:intergenic 30.0%
AAAGAAAGTTATCCCGAATT+TGG + chr7_2:64844276-64844295 Msa1069300:CDS 30.0%
TGAATAACTTTGCCAAATTC+GGG - chr7_2:64844291-64844310 None:intergenic 30.0%
CTGAATAACTTTGCCAAATT+CGG - chr7_2:64844292-64844311 None:intergenic 30.0%
! TAGACCGGAATTTAAAACAA+GGG - chr7_2:64844354-64844373 None:intergenic 30.0%
AACTTCATATCTAATATGCG+AGG + chr7_2:64844431-64844450 Msa1069300:three_prime_UTR 30.0%
!! CATTGCTAAATTTTAACAGC+AGG + chr7_2:64844490-64844509 Msa1069300:three_prime_UTR 30.0%
!! TTGCTAAATTTTAACAGCAG+GGG + chr7_2:64844492-64844511 Msa1069300:three_prime_UTR 30.0%
! ATTTCTCTTTTCTCTTCCAT+TGG + chr7_2:64844579-64844598 Msa1069300:three_prime_UTR 30.0%
GTTCTCTTGTTCTTGAAGTA+GGG - chr7_2:64842596-64842615 None:intergenic 35.0%
AGTTCTCTTGTTCTTGAAGT+AGG - chr7_2:64842597-64842616 None:intergenic 35.0%
GATTGAGGAATCAAGTTACA+AGG + chr7_2:64842740-64842759 Msa1069300:CDS 35.0%
AATGAAGGACATAGAAACAC+TGG + chr7_2:64842773-64842792 Msa1069300:CDS 35.0%
ATAGAAACACTGGAGAAGAA+GGG + chr7_2:64842783-64842802 Msa1069300:CDS 35.0%
!! TGATGCATCGATTTCTTTCT+CGG - chr7_2:64842952-64842971 None:intergenic 35.0%
AGCAAGTACTTGTTCTTCAT+TGG - chr7_2:64843036-64843055 None:intergenic 35.0%
! AGAACAAGTACTTGCTGAAT+TGG + chr7_2:64843040-64843059 Msa1069300:CDS 35.0%
TAGAGTTCAAAGAGAAAGAG+AGG + chr7_2:64843097-64843116 Msa1069300:CDS 35.0%
CACAAGAAAAAAGTTGAAGG+AGG + chr7_2:64843148-64843167 Msa1069300:CDS 35.0%
TGGTCAAAGAAATGGAGAAA+AGG + chr7_2:64843261-64843280 Msa1069300:CDS 35.0%
GGTCAAAGAAATGGAGAAAA+GGG + chr7_2:64843262-64843281 Msa1069300:CDS 35.0%
! GAAAGTGTGAAACTATTGGA+AGG + chr7_2:64843296-64843315 Msa1069300:CDS 35.0%
! AACAACTGAAGCTTTAGCTT+TGG + chr7_2:64843781-64843800 Msa1069300:CDS 35.0%
GGTTTACATCAAAGAGAAGA+TGG + chr7_2:64844063-64844082 Msa1069300:CDS 35.0%
!!! AACGCCCTTGTTTTAAATTC+CGG + chr7_2:64844347-64844366 Msa1069300:three_prime_UTR 35.0%
! GTAGACCGGAATTTAAAACA+AGG - chr7_2:64844355-64844374 None:intergenic 35.0%
ATATCTAATATGCGAGGTGA+AGG + chr7_2:64844437-64844456 Msa1069300:three_prime_UTR 35.0%
ATGAAAAACACTAGAGCCAA+TGG - chr7_2:64844598-64844617 None:intergenic 35.0%
! CCATCTTTTGCCAAAACTGA+AGG - chr7_2:64842209-64842228 None:intergenic 40.0%
!! CCTTCAGTTTTGGCAAAAGA+TGG + chr7_2:64842206-64842225 Msa1069300:intron 40.0%
! TTCCAATGTCTCTTCTAGCT+TGG - chr7_2:64842623-64842642 None:intergenic 40.0%
AAGCTAGAAGAGACATTGGA+AGG + chr7_2:64842622-64842641 Msa1069300:CDS 40.0%
! GAAGGTACAAAGAGAGTAGA+TGG + chr7_2:64842640-64842659 Msa1069300:CDS 40.0%
GGAATCAAGTTACAAGGCTA+AGG + chr7_2:64842746-64842765 Msa1069300:CDS 40.0%
CATAGAAACACTGGAGAAGA+AGG + chr7_2:64842782-64842801 Msa1069300:CDS 40.0%
AAGAAGGGAAAAGGTCAACA+TGG + chr7_2:64842798-64842817 Msa1069300:CDS 40.0%
! AAAAGGTCAACATGGTGCTA+TGG + chr7_2:64842806-64842825 Msa1069300:CDS 40.0%
!! AACATGGTGCTATGGTTGTA+AGG + chr7_2:64842814-64842833 Msa1069300:CDS 40.0%
TGCACAAGTGATGAGAGAAT+TGG + chr7_2:64842857-64842876 Msa1069300:CDS 40.0%
GTTTAAGCTAAAGCTTGACG+TGG + chr7_2:64842899-64842918 Msa1069300:CDS 40.0%
!! GATTGAGGCTTTGAAAGAGT+TGG + chr7_2:64843067-64843086 Msa1069300:CDS 40.0%
GAAATGGAGAAAAGGGTTCA+AGG + chr7_2:64843269-64843288 Msa1069300:CDS 40.0%
TTAAGAAAGGGTGACGAATC+AGG + chr7_2:64843323-64843342 Msa1069300:CDS 40.0%
TACCGAGTTACAAACCGTAA+AGG + chr7_2:64843352-64843371 Msa1069300:CDS 40.0%
CTCCTTTACGGTTTGTAACT+CGG - chr7_2:64843357-64843376 None:intergenic 40.0%
! GTTTGAGATTGATACGAGTG+AGG + chr7_2:64843718-64843737 Msa1069300:CDS 40.0%
ACGAGTGAGGAAAAATTGCA+AGG + chr7_2:64843731-64843750 Msa1069300:CDS 40.0%
GAGTGAGAAGGAAATACTAC+TGG + chr7_2:64843985-64844004 Msa1069300:CDS 40.0%
TGCAAGAAGAGTTAGTAGTG+AGG + chr7_2:64844087-64844106 Msa1069300:CDS 40.0%
TAGAACAAGAAAACGCGAGA+AGG + chr7_2:64844117-64844136 Msa1069300:CDS 40.0%
AGAACAAGAAAACGCGAGAA+GGG + chr7_2:64844118-64844137 Msa1069300:CDS 40.0%
!! GGGCGTTGAATTTACTCTTT+AGG - chr7_2:64844334-64844353 None:intergenic 40.0%
! GGTGAAGGATTTTCATGTCT+TGG + chr7_2:64844452-64844471 Msa1069300:three_prime_UTR 40.0%
! AACTCAGATGGATTTCGCAG+CGG + chr7_2:64842338-64842357 Msa1069300:intron 45.0%
CACCAAGCTAGAAGAGACAT+TGG + chr7_2:64842618-64842637 Msa1069300:CDS 45.0%
CAAGGCTAAGGCGAAAATGA+AGG + chr7_2:64842758-64842777 Msa1069300:CDS 45.0%
ACACTGGAGAAGAAGGGAAA+AGG + chr7_2:64842789-64842808 Msa1069300:CDS 45.0%
!! ATGGTGCTATGGTTGTAAGG+AGG + chr7_2:64842817-64842836 Msa1069300:CDS 45.0%
! AAGTACTTGCTGAATTGGCC+AGG + chr7_2:64843045-64843064 Msa1069300:CDS 45.0%
CTCTTTCAAAGCCTCAATCC+TGG - chr7_2:64843066-64843085 None:intergenic 45.0%
!! TGAGGCTTTGAAAGAGTTGG+AGG + chr7_2:64843070-64843089 Msa1069300:CDS 45.0%
CGAGTTACAAACCGTAAAGG+AGG + chr7_2:64843355-64843374 Msa1069300:CDS 45.0%
AACCGTAAAGGAGGAACTTG+AGG + chr7_2:64843364-64843383 Msa1069300:CDS 45.0%
CGAGCTGAAGCATGTAACTA+AGG + chr7_2:64843460-64843479 Msa1069300:CDS 45.0%
TAAAAAAGTTGCGGCAGCTG+AGG + chr7_2:64843940-64843959 Msa1069300:CDS 45.0%
!! CATTTTGAAGGAAGAGAGGG+AGG + chr7_2:64844042-64844061 Msa1069300:CDS 45.0%
TTGTGCATGCGATTGTAGAC+CGG - chr7_2:64844369-64844388 None:intergenic 45.0%
AACAGCAGGGGAAAATAGTG+AGG + chr7_2:64844504-64844523 Msa1069300:three_prime_UTR 45.0%
! TTTCGCAGCGGATTTCTCAG+CGG + chr7_2:64842350-64842369 Msa1069300:intron 50.0%
TGCTGAATTGGCCAGGATTG+AGG + chr7_2:64843052-64843071 Msa1069300:CDS 50.0%
CGCCTCAAGTTCCTCCTTTA+CGG - chr7_2:64843369-64843388 None:intergenic 50.0%
CGTAAAGGAGGAACTTGAGG+CGG + chr7_2:64843367-64843386 Msa1069300:CDS 50.0%
GTGAAAGGACTAATGTGCCG+AGG - chr7_2:64844244-64844263 None:intergenic 50.0%
AGAAGCTGCATCTGCTGCAG+AGG + chr7_2:64843559-64843578 Msa1069300:CDS 55.0%
! GGCATGGATTGAAGCGCTCA+AGG + chr7_2:64843961-64843980 Msa1069300:CDS 55.0%
AGGACTAATGTGCCGAGGTG+CGG - chr7_2:64844239-64844258 None:intergenic 55.0%
AAGTTGCGGCAGCTGAGGCA+TGG + chr7_2:64843945-64843964 Msa1069300:CDS 60.0%
AGCGCTCAAGGCGAGTGAGA+AGG + chr7_2:64843973-64843992 Msa1069300:CDS 60.0%
GGACTAATGTGCCGAGGTGC+GGG - chr7_2:64844238-64844257 None:intergenic 60.0%
! CTGCTGCTTCACCCGCACCT+CGG + chr7_2:64844224-64844243 Msa1069300:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 64842145 64844714 64842145 ID=Msa1069300;Name=Msa1069300
chr7_2 mRNA 64842145 64844714 64842145 ID=Msa1069300-mRNA-1;Parent=Msa1069300;Name=Msa1069300-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0.33|1|0|0.33|3|372|606
chr7_2 exon 64842145 64842153 64842145 ID=Msa1069300-mRNA-1:exon:13540;Parent=Msa1069300-mRNA-1
chr7_2 exon 64842213 64842272 64842213 ID=Msa1069300-mRNA-1:exon:13541;Parent=Msa1069300-mRNA-1
chr7_2 exon 64842591 64844714 64842591 ID=Msa1069300-mRNA-1:exon:13542;Parent=Msa1069300-mRNA-1
chr7_2 CDS 64842145 64842153 64842145 ID=Msa1069300-mRNA-1:cds;Parent=Msa1069300-mRNA-1
chr7_2 CDS 64842213 64842272 64842213 ID=Msa1069300-mRNA-1:cds;Parent=Msa1069300-mRNA-1
chr7_2 CDS 64842591 64844342 64842591 ID=Msa1069300-mRNA-1:cds;Parent=Msa1069300-mRNA-1
chr7_2 three_prime_UTR 64844343 64844714 64844343 ID=Msa1069300-mRNA-1:three_prime_utr;Parent=Msa1069300-mRNA-1
Gene Sequence

>Msa1069300

ATGGTGATTTTTTGGCAAAAGATGGATGATACTAAAGTTGGTATGAGAAGAGTTAGATCAGTTAAAGATAACCCTACTTCAAGAACAAGAGAACTACACCAAGCTAGAAGAGACATTGGAAGGTACAAAGAGAGTAGATGGACAGCAGAATCTGCAAAATCTCAAGCTGAATCTGAGCTTTTAAATGCTAAAAAGACAGCGAAAAATTTCTCTTCTATGATTGAGGAATCAAGTTACAAGGCTAAGGCGAAAATGAAGGACATAGAAACACTGGAGAAGAAGGGAAAAGGTCAACATGGTGCTATGGTTGTAAGGAGGAATGAGAATTATGAGTATGCACAAGTGATGAGAGAATTGGAATATCTCAAAAAGGAATTGTTTAAGCTAAAGCTTGACGTGGCTTCTGTTTTGCAACAGAAATCGCGAGCCGAGAAAGAAATCGATGCATCAAGCTCGAAGATGATCGATTGTTCAAGAAAAGAAGAAGTACTTAGGAAAGAGATTGAAGAAGCCAATGAAGAACAAGTACTTGCTGAATTGGCCAGGATTGAGGCTTTGAAAGAGTTGGAGGATATTAGAGTTCAAAGAGAAAGAGAGGCAAATGAGTTTTCATTCAAATTGGAAAACACAAGAAAAAAGTTGAAGGAGGCCACAAAAGAGATAGAAAAATCAAAGGAACTTGAAATGAAATTAGCTATGACAGTTTCAGATGTTGATCTGTTGCAGATTCAATTGAATTTGGTCAAAGAAATGGAGAAAAGGGTTCAAGGAGATGAAAGTGTGAAACTATTGGAAGGAAGTTTAAGAAAGGGTGACGAATCAGGAGACTCTACCGAGTTACAAACCGTAAAGGAGGAACTTGAGGCGGCAACGAAAGAATTAGCTTTGATTAGAGATGAAGGTTTTCAGTTTATGGCTTCTATGGATGTTATAAGAAACGAGCTGAAGCATGTAACTAAGGAAATAGCTCGCTTGAAGAAAAACGATTCATCGGTTCAAAATCTCAATTCAAAGGTTCTAAGAACAAAATCTAAGCTAGAAGCTGCATCTGCTGCAGAGGAAAAAGCAAGATCATTAGTAATTAGTCTATCTCATTCTCTTGAGACTCTGAAGAAAGAAACAGATGAAGCTAAAATGGAAAAAGAGCTCATATCTCAAGATATTATAACAACTAAGTTGGAAATTGAAAAAACTGAGTTTGAGATTGATACGAGTGAGGAAAAATTGCAAGGTGTTATGAAAGAGTTAGAAGAAGCAAAAACAACTGAAGCTTTAGCTTTGGAGAAGCTTAAAACACTTTCTGAGACAACCATGAAAGAAAGAGCTTTAACAGCAAAACATAGTTCATCGATTACTATCTCCAAATTTGAATACGAGTATCTAACTAATCATGCAGCTGCAGCAGAAGAACTTGCTGATAAAAAAGTTGCGGCAGCTGAGGCATGGATTGAAGCGCTCAAGGCGAGTGAGAAGGAAATACTACTGGAAACAAAAATAGTTCAAAGAGAACTCAAAGAAAACATTTTGAAGGAAGAGAGGGAGGTTTACATCAAAGAGAAGATGGCTGCAAGAAGAGTTAGTAGTGAGGAGTTTGATAGAACAAGAAAACGCGAGAAGGGTTCGTCGCAGAGAGCTATTTCTAGAAAGAGTATTAAATCAAATGGAAGTATGACTCCTGCTAAAAGAATCAAGTTTCAGAAGTCTGCTGCTTCACCCGCACCTCGGCACATTAGTCCTTTCACTCTTAAGAAGAGAAAGAAAGTTATCCCGAATTTGGCAAAGTTATTCAGTAGCAAGAAAAACACTATGCCTAAAGAGTAA

Protein sequence

>Msa1069300

MVIFWQKMDDTKVGMRRVRSVKDNPTSRTRELHQARRDIGRYKESRWTAESAKSQAESELLNAKKTAKNFSSMIEESSYKAKAKMKDIETLEKKGKGQHGAMVVRRNENYEYAQVMRELEYLKKELFKLKLDVASVLQQKSRAEKEIDASSSKMIDCSRKEEVLRKEIEEANEEQVLAELARIEALKELEDIRVQREREANEFSFKLENTRKKLKEATKEIEKSKELEMKLAMTVSDVDLLQIQLNLVKEMEKRVQGDESVKLLEGSLRKGDESGDSTELQTVKEELEAATKELALIRDEGFQFMASMDVIRNELKHVTKEIARLKKNDSSVQNLNSKVLRTKSKLEAASAAEEKARSLVISLSHSLETLKKETDEAKMEKELISQDIITTKLEIEKTEFEIDTSEEKLQGVMKELEEAKTTEALALEKLKTLSETTMKERALTAKHSSSITISKFEYEYLTNHAAAAEELADKKVAAAEAWIEALKASEKEILLETKIVQRELKENILKEEREVYIKEKMAARRVSSEEFDRTRKREKGSSQRAISRKSIKSNGSMTPAKRIKFQKSAASPAPRHISPFTLKKRKKVIPNLAKLFSSKKNTMPKE*