AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1208380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208380 MtrunA17_Chr4g0057301 93.132 597 24 4 1 597 1 580 0.0 1015
Msa1208380 MtrunA17_Chr8g0350381 41.743 218 121 3 381 597 323 535 1.14e-44 166
Msa1208380 MtrunA17_Chr8g0350381 34.014 294 138 16 1 275 36 292 5.53e-18 87.4
Msa1208380 MtrunA17_Chr4g0058781 31.138 167 101 5 441 595 206 370 2.54e-13 72.0
Msa1208380 MtrunA17_Chr1g0188921 31.746 189 88 5 438 596 288 465 2.08e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208380 AT4G11740.1 45.994 624 250 18 1 597 1 564 4.10e-136 409
Msa1208380 AT4G23040.1 44.793 605 246 18 1 597 1 525 4.96e-117 358
Msa1208380 AT4G11740.2 41.524 525 220 18 1 498 1 465 2.34e-88 282
Msa1208380 AT4G00752.1 53.846 117 47 1 481 597 359 468 1.85e-32 130
Msa1208380 AT4G00752.1 28.155 412 220 11 1 404 1 344 7.84e-26 111
Msa1208380 AT4G10790.1 31.953 169 86 5 447 596 321 479 3.84e-13 72.4

Find 174 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAAAGCTTCTTGCTTAT+TGG 0.125120 8_1:+66423904 None:intergenic
AACAATAACCGTATCTAAAT+TGG 0.200110 8_1:+66423580 None:intergenic
TGCGGAGGACTGCTGCTTTC+CGG 0.215239 8_1:+66425133 None:intergenic
CCTGGAGCTTATGAGATCTT+AGG 0.219787 8_1:+66424256 None:intergenic
GTAGGATCAATAAGAGAAAA+TGG 0.285471 8_1:+66426304 None:intergenic
ATGATGAAACAAAGAGGATT+TGG 0.297214 8_1:+66427751 None:intergenic
GGCGATAACCACTTCCTTCC+GGG 0.309185 8_1:+66424912 None:intergenic
CGCCCACGACGGCTGCCATC+TGG 0.310057 8_1:+66424285 None:intergenic
CCAATAGTTGAAGATGTTAC+TGG 0.310930 8_1:-66426145 Msa1208380:CDS
CCAGTAACATCTTCAACTAT+TGG 0.316434 8_1:+66426145 None:intergenic
TCTCTTATTGATCCTACAAT+TGG 0.317933 8_1:-66426298 Msa1208380:CDS
TCTATGTCATTGCTGCTATC+TGG 0.323869 8_1:+66425980 None:intergenic
GTGCAGGACGTGAGTGAATC+TGG 0.324522 8_1:-66425797 Msa1208380:intron
TGCAGTTTCATTGTCCTTGA+AGG 0.329311 8_1:-66425729 Msa1208380:intron
ATTGGATTTAAATTATTTGC+AGG 0.348056 8_1:+66423598 None:intergenic
GGAATTTGCCTTACCTCTCT+TGG 0.348395 8_1:+66426217 None:intergenic
ACATGAGTTCATGCAGAATA+GGG 0.354183 8_1:-66424876 Msa1208380:CDS
ATGACACTCCCATGTATATC+TGG 0.359077 8_1:+66426103 None:intergenic
AGTATACTTCTCCCAATTGT+AGG 0.369406 8_1:+66426286 None:intergenic
CCCATGTATATCTGGACCTT+GGG 0.371893 8_1:+66426111 None:intergenic
CATCTTCAACTATTGGAATA+TGG 0.374805 8_1:+66426152 None:intergenic
ATTCGTGGATGCTTTGTTGT+AGG 0.381356 8_1:-66423694 Msa1208380:three_prime_UTR
AGAATCTCAAAGAAAGTTGC+AGG 0.386414 8_1:-66424561 Msa1208380:CDS
CACATGAGTTCATGCAGAAT+AGG 0.393615 8_1:-66424877 Msa1208380:CDS
CGGCGATAACCACTTCCTTC+CGG 0.398155 8_1:+66424911 None:intergenic
TGTTGTGCCTGCCAGTGTGC+TGG 0.398181 8_1:+66425159 None:intergenic
TCACCCTCCTTCACCATCAT+TGG 0.401882 8_1:-66424822 Msa1208380:CDS
TGGTACTGTGGTAGTAAATA+TGG 0.401964 8_1:-66425328 Msa1208380:intron
AAAAGTGATTGCCTTGGGTT+AGG 0.405676 8_1:+66425773 None:intergenic
TCAACTCCTTGTGTCTTAGA+TGG 0.413557 8_1:+66425484 None:intergenic
ATATGGTCATTGTAGATTGC+AGG 0.414538 8_1:-66425311 Msa1208380:CDS
CCAAAGGCACGCCTAGGATA+TGG 0.415543 8_1:+66423968 None:intergenic
CTCTCGTCTGGATGCCTCAA+TGG 0.415695 8_1:+66425937 None:intergenic
GTGTCAATCGTCTCTTGATT+AGG 0.417630 8_1:+66427678 None:intergenic
CGTTCCCCAAGGAGATTTCA+TGG 0.423137 8_1:-66426393 Msa1208380:CDS
TCATCATCAGAGGATGGTTC+TGG 0.423795 8_1:+66424336 None:intergenic
TCTATCCATGAAATCTCCTT+GGG 0.423971 8_1:+66426388 None:intergenic
CTCTTATTGATCCTACAATT+GGG 0.431169 8_1:-66426297 Msa1208380:CDS
TGGAGGCTCAGCGCTTGATA+AGG 0.432269 8_1:-66424802 Msa1208380:CDS
AGACACAAGGAGTTGACTTA+GGG 0.445695 8_1:-66425477 Msa1208380:CDS
ATCTATCCATGAAATCTCCT+TGG 0.447087 8_1:+66426387 None:intergenic
TAGAGGAGATGCCTTTGGTT+AGG 0.447607 8_1:-66425249 Msa1208380:CDS
AACTTAAAGGTGTACCTTCA+AGG 0.447852 8_1:+66425715 None:intergenic
CTCACCAGTCTGTAACTGCT+TGG 0.449344 8_1:+66424103 None:intergenic
AGATGCCTTTGGTTAGGAAC+AGG 0.451031 8_1:-66425243 Msa1208380:CDS
CCTCTAAAAGTGATTGCCTT+GGG 0.451247 8_1:+66425768 None:intergenic
CCATATCCTAGGCGTGCCTT+TGG 0.452267 8_1:-66423968 Msa1208380:CDS
TGGTGGTAGAGAGACTTCTT+TGG 0.454142 8_1:+66424356 None:intergenic
CGAAGGAGACAGAAATTTGA+TGG 0.458140 8_1:-66426573 Msa1208380:CDS
GATGAGTGACAAACGGCGCC+TGG 0.460210 8_1:+66426239 None:intergenic
TTGGATTTAAATTATTTGCA+GGG 0.460676 8_1:+66423599 None:intergenic
GGAGGCTCAGCGCTTGATAA+GGG 0.466359 8_1:-66424801 Msa1208380:CDS
AAGAAAGTTGCAGGAAGAGC+AGG 0.467946 8_1:-66424552 Msa1208380:intron
GCAAATTCCGATAGAGGATA+AGG 0.469648 8_1:-66426203 Msa1208380:CDS
GCGCTTGATAAGGGAACAAC+AGG 0.471422 8_1:-66424792 Msa1208380:intron
AAGACACAAGGAGTTGACTT+AGG 0.474030 8_1:-66425478 Msa1208380:CDS
TCACTTAGCTCCACAGGGTC+AGG 0.475192 8_1:-66425205 Msa1208380:CDS
CCCTCCTTCACCATCATTGG+AGG 0.475775 8_1:-66424819 Msa1208380:CDS
TGCAATGTTCGGTGGAATCC+CGG 0.476007 8_1:-66424930 Msa1208380:CDS
AGTATACTTGATACTCATCT+TGG 0.477017 8_1:-66426271 Msa1208380:CDS
CTTCATAGATATTGGTAGAC+AGG 0.477272 8_1:-66424131 Msa1208380:CDS
ATGCTTGAGGCTGCAATGTT+CGG 0.477862 8_1:-66424941 Msa1208380:CDS
GATGCTGGAGCACCTACGGC+AGG 0.478392 8_1:-66425508 Msa1208380:CDS
AGATGTAGAGGAGATGCCTT+TGG 0.483061 8_1:-66425254 Msa1208380:CDS
ACTTATCATGGAAATATTCG+TGG 0.488746 8_1:-66423709 Msa1208380:three_prime_UTR
GGTAAGGCAAATTCCGATAG+AGG 0.489342 8_1:-66426209 Msa1208380:CDS
AATTGCACTGCAAAAGCTTC+AGG 0.492758 8_1:-66427625 Msa1208380:intron
CTTCTAAACTCTACGGCGTA+CGG 0.493880 8_1:-66427834 Msa1208380:five_prime_UTR
GGGTGATATGCAAGAGGTGC+GGG 0.494974 8_1:+66424839 None:intergenic
CATGTGTCACTTAGCTCCAC+AGG 0.497077 8_1:-66425211 Msa1208380:CDS
TTAGGGGAAGTATCTTCAAA+TGG 0.499966 8_1:-66425460 Msa1208380:CDS
ACTGGCAGGCACAACAGTTC+CGG 0.502879 8_1:-66425152 Msa1208380:CDS
CTACCATCCTTATCCTCTAT+CGG 0.505961 8_1:+66426196 None:intergenic
TCCCATGTATATCTGGACCT+TGG 0.507661 8_1:+66426110 None:intergenic
TTCTCCAATGTGGGAGCACT+AGG 0.508488 8_1:+66426007 None:intergenic
TCCTCTAAAAGTGATTGCCT+TGG 0.509045 8_1:+66425767 None:intergenic
GGTGAAGAATTAGTCGGAGC+AGG 0.510649 8_1:+66426046 None:intergenic
TGAAGAAGATGAAGATGTAG+AGG 0.512456 8_1:-66425266 Msa1208380:CDS
ATGCCAGATGGCAGCCGTCG+TGG 0.515721 8_1:-66424288 Msa1208380:CDS
CAAGAGGTGCGGGCTGAGGA+TGG 0.523670 8_1:+66424849 None:intergenic
CTAGGTCTCGCACTACTGTC+AGG 0.525591 8_1:+66426025 None:intergenic
TAGGCGTGCCTTTGGTGTTG+AGG 0.525926 8_1:-66423960 Msa1208380:CDS
GACACATTCATCAGCATCAC+CGG 0.531398 8_1:-66427660 Msa1208380:CDS
GAAACTGCACGAGCAAGCTC+AGG 0.531446 8_1:+66425743 None:intergenic
GCTTATGAGATCTTAGGAAT+CGG 0.531602 8_1:+66424262 None:intergenic
ATTATTTGCAGGGGAAGAGA+TGG 0.532664 8_1:+66423609 None:intergenic
TGCCAGATGGCAGCCGTCGT+GGG 0.532912 8_1:-66424287 Msa1208380:CDS
CCTAAGATCTCATAAGCTCC+AGG 0.534553 8_1:-66424256 Msa1208380:intron
AGCATCTTTGCCTGACCCTG+TGG 0.535288 8_1:+66425195 None:intergenic
GGCATCCAGACGAGAGGCTG+AGG 0.536461 8_1:-66425930 Msa1208380:CDS
AAGGACTATACTTCATCAGA+TGG 0.537129 8_1:+66425094 None:intergenic
CGTGTACAAGAAGGTGATGC+TGG 0.537918 8_1:-66425523 Msa1208380:CDS
CTTGCAAAAGATAAAAGAGA+TGG 0.538424 8_1:+66426337 None:intergenic
TGAGGAAAGTGCTGTGACAT+TGG 0.539969 8_1:-66423942 Msa1208380:CDS
GAGACAGAAATTTGATGGCC+AGG 0.541997 8_1:-66426568 Msa1208380:CDS
ATCGAGTCCAGCACACTGGC+AGG 0.544729 8_1:-66425166 Msa1208380:CDS
AAGCGCTGAGCCTCCAATGA+TGG 0.546680 8_1:+66424809 None:intergenic
GGTGGAATCCCGGAAGGAAG+TGG 0.546810 8_1:-66424920 Msa1208380:CDS
CATGAAATCTCCTTGGGGAA+CGG 0.548281 8_1:+66426394 None:intergenic
AATATCAAATCATGTTCAAG+TGG 0.556375 8_1:+66427809 None:intergenic
GCTGTGACATTGGACGAACT+TGG 0.558529 8_1:-66423932 Msa1208380:CDS
AGGTGATGCTGGAGCACCTA+CGG 0.559902 8_1:-66425512 Msa1208380:CDS
CTATACTTCATCAGATGGGA+AGG 0.562623 8_1:+66425099 None:intergenic
TCTCTTGGATGAGTGACAAA+CGG 0.564540 8_1:+66426232 None:intergenic
TATCATTCTTCTAAACTCTA+CGG 0.567389 8_1:-66427841 Msa1208380:five_prime_UTR
AGCAACCTCAGCTTCCGCAA+TGG 0.570576 8_1:+66424610 None:intergenic
AGCTCTGCCGCCGTTCCCCA+AGG 0.572207 8_1:-66426404 Msa1208380:CDS
TTTCAATATTTACAGTGGGG+TGG 0.572452 8_1:-66424995 Msa1208380:intron
ATCTGGTAAATTCTCCAATG+TGG 0.573046 8_1:+66425997 None:intergenic
GTTAATGCATATTTCAGCGA+AGG 0.573755 8_1:-66426590 Msa1208380:CDS
GATTGCGATTTCGATTTCCA+TGG 0.575402 8_1:-66427706 Msa1208380:exon
GCCCAAGGTCCAGATATACA+TGG 0.578375 8_1:-66426112 Msa1208380:CDS
CAAACCAAGCAGTTACAGAC+TGG 0.578668 8_1:-66424107 Msa1208380:intron
TATGCAAGAGGTGCGGGCTG+AGG 0.580181 8_1:+66424845 None:intergenic
AGTCAATCAACTCCTCAAGC+TGG 0.583922 8_1:-66426175 Msa1208380:CDS
CTCTTGATTAGGTGTCGCCA+TGG 0.585370 8_1:+66427689 None:intergenic
GGGAAGTATCTTCAAATGGA+AGG 0.585921 8_1:-66425456 Msa1208380:intron
TGCAGGACGTGAGTGAATCT+GGG 0.588133 8_1:-66425796 Msa1208380:intron
GTGGGGTGGCATGTCTTCAG+TGG 0.588272 8_1:-66424981 Msa1208380:CDS
CATGAGTTCATGCAGAATAG+GGG 0.589737 8_1:-66424875 Msa1208380:CDS
TCACTCATCCAAGAGAGGTA+AGG 0.590566 8_1:-66426225 Msa1208380:CDS
AATGATTCGTGCAGCCATTG+AGG 0.594407 8_1:-66425951 Msa1208380:CDS
TCATCTTGGTGCAACAAACC+AGG 0.596500 8_1:-66426257 Msa1208380:CDS
ACTGGAACTGTTCATGCCCA+AGG 0.596583 8_1:-66426127 Msa1208380:CDS
TGCAATTGGTTGAGAAACAC+CGG 0.598757 8_1:+66427641 None:intergenic
GAAGGCCATTGCGGAAGCTG+AGG 0.599946 8_1:-66424615 Msa1208380:CDS
CACAGCACTGTCATCATCAG+AGG 0.600630 8_1:+66424326 None:intergenic
GTCTTAGATGGCCCTGCCGT+AGG 0.601129 8_1:+66425496 None:intergenic
TCTGGTAAATTCTCCAATGT+GGG 0.601343 8_1:+66425998 None:intergenic
GCAAAAGATAAAAGAGATGG+AGG 0.602367 8_1:+66426340 None:intergenic
TCAACACCAAAGGCACGCCT+AGG 0.602812 8_1:+66423962 None:intergenic
ACTCATGTGGTGCATAAGCA+CGG 0.608070 8_1:+66424891 None:intergenic
TTGATGATGATGAAACAAAG+AGG 0.609697 8_1:+66427745 None:intergenic
TGGATTTAAATTATTTGCAG+GGG 0.611208 8_1:+66423600 None:intergenic
TGTCTGCTTCTAATGATGCA+AGG 0.612016 8_1:+66424651 None:intergenic
AAAGCACGGCGTGTACAAGA+AGG 0.613259 8_1:-66425532 Msa1208380:CDS
AGCTGAGGTTGCTCGCGAAG+AGG 0.613437 8_1:-66424600 Msa1208380:CDS
GGTCATTGTAGATTGCAGGC+AGG 0.615122 8_1:-66425307 Msa1208380:CDS
TGAGCCTCCAATGATGGTGA+AGG 0.617026 8_1:+66424815 None:intergenic
CTTGAGGCTGCAATGTTCGG+TGG 0.621722 8_1:-66424938 Msa1208380:CDS
GAAATCTCCTTGGGGAACGG+CGG 0.621741 8_1:+66426397 None:intergenic
ATGCTGGAGCACCTACGGCA+GGG 0.622987 8_1:-66425507 Msa1208380:CDS
ATTGGAATATGGCCAGCTTG+AGG 0.623410 8_1:+66426163 None:intergenic
GTAGACCTGTTCCTAACCAA+AGG 0.623848 8_1:+66425238 None:intergenic
GCCTCCAATGATGGTGAAGG+AGG 0.625027 8_1:+66424818 None:intergenic
TTAGGAATCGGCGCCCACGA+CGG 0.625136 8_1:+66424274 None:intergenic
GGCAGGTAAGACCATATCCT+AGG 0.626242 8_1:-66423979 Msa1208380:intron
AGCACTTTCCTCAACACCAA+AGG 0.630829 8_1:+66423952 None:intergenic
AGGGTGATATGCAAGAGGTG+CGG 0.631640 8_1:+66424838 None:intergenic
AAAAGAATTGAAGGCCATTG+CGG 0.632012 8_1:-66424624 Msa1208380:CDS
GTGAATCTGGGCCTAACCCA+AGG 0.632081 8_1:-66425784 Msa1208380:CDS
CTGTCAGGTGAAGAATTAGT+CGG 0.632592 8_1:+66426040 None:intergenic
AGGACTATACTTCATCAGAT+GGG 0.635714 8_1:+66425095 None:intergenic
ATTAATCGAGTCCAGCACAC+TGG 0.635866 8_1:-66425170 Msa1208380:CDS
ATATCAAATCATGTTCAAGT+GGG 0.636947 8_1:+66427810 None:intergenic
CCCAAGGTCCAGATATACAT+GGG 0.639087 8_1:-66426111 Msa1208380:CDS
ATGTTCGGTGGAATCCCGGA+AGG 0.645721 8_1:-66424926 Msa1208380:CDS
GCACTGTCATCATCAGAGGA+TGG 0.645765 8_1:+66424330 None:intergenic
TCATCAGAGGATGGTTCTGG+TGG 0.646164 8_1:+66424339 None:intergenic
GGGAAGGAATTGTCATTATG+CGG 0.648088 8_1:+66425115 None:intergenic
GAGACCTAGTGCTCCCACAT+TGG 0.648732 8_1:-66426011 Msa1208380:CDS
CTATTCTGCATGAACTCATG+TGG 0.657273 8_1:+66424878 None:intergenic
GACACAAGGAGTTGACTTAG+GGG 0.664345 8_1:-66425476 Msa1208380:CDS
ATTCCGATAGAGGATAAGGA+TGG 0.664553 8_1:-66426199 Msa1208380:CDS
AAGGAATTGTCATTATGCGG+AGG 0.670479 8_1:+66425118 None:intergenic
CATTGAGGCATCCAGACGAG+AGG 0.670635 8_1:-66425936 Msa1208380:CDS
CTATCCATGAAATCTCCTTG+GGG 0.683243 8_1:+66426389 None:intergenic
TGACAGTGCTGTGAATCTGA+TGG 0.684961 8_1:-66424316 Msa1208380:CDS
GTTTGTCACTCATCCAAGAG+AGG 0.689319 8_1:-66426230 Msa1208380:CDS
ATGTGTCACTTAGCTCCACA+GGG 0.692890 8_1:-66425210 Msa1208380:CDS
GCAGGGCCATCTAAGACACA+AGG 0.699427 8_1:-66425490 Msa1208380:CDS
CCTCCAATGATGGTGAAGGA+GGG 0.700161 8_1:+66424819 None:intergenic
GAAGGAGGGTGATATGCAAG+AGG 0.710406 8_1:+66424833 None:intergenic
TGATGAAGCAGTAATGCTTG+AGG 0.722177 8_1:-66424954 Msa1208380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTTATTAAAATGTCT+TGG - chr8_1:66424139-66424158 Msa1208380:CDS 10.0%
!! AATAAGATAATTTAAAAACA+AGG + chr8_1:66424349-66424368 None:intergenic 10.0%
!!! TGACTTTATTTTTTTTATAT+TGG - chr8_1:66425866-66425885 Msa1208380:intron 10.0%
!!! TTTTTTTTATATTGGAAATT+TGG - chr8_1:66425874-66425893 Msa1208380:intron 10.0%
!!! TTTGTAAACATTTTTTTTCA+TGG - chr8_1:66424835-66424854 Msa1208380:CDS 15.0%
!!! ATTGTTTTTTTTGATATTGA+TGG - chr8_1:66425036-66425055 Msa1208380:intron 15.0%
!!! TATTTCTTAATTGTTTTTTC+CGG - chr8_1:66425613-66425632 Msa1208380:intron 15.0%
!! AATACAACATATAAAATTAG+AGG + chr8_1:66425642-66425661 None:intergenic 15.0%
!! AAAAAATAAAGTCAAAGTTA+CGG + chr8_1:66425860-66425879 None:intergenic 15.0%
!!! TAATTTTCAATATTTACAGT+GGG - chr8_1:66426479-66426498 Msa1208380:intron 15.0%
!!! AATTTTAAGATAAGAATGAT+AGG + chr8_1:66427417-66427436 None:intergenic 15.0%
!!! TGATTTGATATTTTTCAGTT+CGG - chr8_1:66423680-66423699 Msa1208380:three_prime_UTR 20.0%
!!! ACAAATTGTTATTACTCTTT+AGG - chr8_1:66423904-66423923 Msa1208380:CDS 20.0%
!! TTATGGTTTATCTAATCAAT+AGG - chr8_1:66423967-66423986 Msa1208380:CDS 20.0%
!! TATGGTTTATCTAATCAATA+GGG - chr8_1:66423968-66423987 Msa1208380:CDS 20.0%
!! AACAAAGCAATATTAAATCT+AGG + chr8_1:66424305-66424324 None:intergenic 20.0%
!! TCAACAATATAAGAAACTAA+TGG + chr8_1:66424622-66424641 None:intergenic 20.0%
!! TATGAGAAAGTAAACAATAT+CGG + chr8_1:66424751-66424770 None:intergenic 20.0%
!! ATAGAATAAGTTCTCTTTAA+TGG - chr8_1:66424781-66424800 Msa1208380:intron 20.0%
!! CAAAAAAAACAATGATGAAT+GGG + chr8_1:66425029-66425048 None:intergenic 20.0%
!! TCAAAAAAAACAATGATGAA+TGG + chr8_1:66425030-66425049 None:intergenic 20.0%
!! GGAAAAAACAATTAAGAAAT+AGG + chr8_1:66425614-66425633 None:intergenic 20.0%
!!! ATTTCTTAATTGTTTTTTCC+GGG - chr8_1:66425614-66425633 Msa1208380:intron 20.0%
!! CACTGTAAATATTGAAAATT+AGG + chr8_1:66426480-66426499 None:intergenic 20.0%
!!! CTAATTTTCAATATTTACAG+TGG - chr8_1:66426478-66426497 Msa1208380:intron 20.0%
!!! AATTTTCAATATTTACAGTG+GGG - chr8_1:66426480-66426499 Msa1208380:intron 20.0%
!!! CATCATTTTTCTGAATAATT+AGG + chr8_1:66427445-66427464 None:intergenic 20.0%
!!! TTTTTTTGTTTTGTTTCTGT+TGG - chr8_1:66427466-66427485 Msa1208380:intron 20.0%
!! TTGGATTTAAATTATTTGCA+GGG + chr8_1:66427882-66427901 None:intergenic 20.0%
!! ATTGGATTTAAATTATTTGC+AGG + chr8_1:66427883-66427902 None:intergenic 20.0%
!!! TTTTTGAGGGTTAATATGTA+AGG + chr8_1:66423604-66423623 None:intergenic 25.0%
! TATCATTCTTCTAAACTCTA+CGG - chr8_1:66423637-66423656 Msa1208380:three_prime_UTR 25.0%
! ATATCAAATCATGTTCAAGT+GGG + chr8_1:66423671-66423690 None:intergenic 25.0%
! AATATCAAATCATGTTCAAG+TGG + chr8_1:66423672-66423691 None:intergenic 25.0%
! TGTAATCAGAAAAGTGAATA+AGG + chr8_1:66423887-66423906 None:intergenic 25.0%
!! AGCGATTGAATTTTCAATTA+TGG - chr8_1:66423950-66423969 Msa1208380:CDS 25.0%
!! GAAAATTGTATTTTTCTCTC+TGG - chr8_1:66424029-66424048 Msa1208380:intron 25.0%
!! TATTTGTTGAATGATCAATG+AGG - chr8_1:66424057-66424076 Msa1208380:intron 25.0%
! TATAATCAGTTCTATGATGT+TGG - chr8_1:66424191-66424210 Msa1208380:intron 25.0%
!!! TTATTGCTGATTTCTGAATT+TGG - chr8_1:66424323-66424342 Msa1208380:CDS 25.0%
! AAACAAGAAGAAAACTGTAA+TGG + chr8_1:66424375-66424394 None:intergenic 25.0%
! AAAAATAAGCTAATCCAAAC+AGG + chr8_1:66424458-66424477 None:intergenic 25.0%
! AAAAATGTTTACAAATGCAG+AGG + chr8_1:66424830-66424849 None:intergenic 25.0%
!!! TAAACATTTTTTTTCATGGC+AGG - chr8_1:66424839-66424858 Msa1208380:CDS 25.0%
!!! TTTTTTTTGATATTGATGGC+CGG - chr8_1:66425040-66425059 Msa1208380:intron 25.0%
!!! ATTAATTTGTATTTCCCACA+TGG - chr8_1:66425659-66425678 Msa1208380:intron 25.0%
! AATAAGAGAACACAACTTAA+AGG + chr8_1:66425779-66425798 None:intergenic 25.0%
! TTTGACTGTTATATATGACA+TGG - chr8_1:66426130-66426149 Msa1208380:CDS 25.0%
! TCTGAAAATTCATAAAGTGA+AGG + chr8_1:66426406-66426425 None:intergenic 25.0%
!! CACTTTATGAATTTTCAGAA+CGG - chr8_1:66426407-66426426 Msa1208380:intron 25.0%
!! ACTTTATGAATTTTCAGAAC+GGG - chr8_1:66426408-66426427 Msa1208380:intron 25.0%
! TAGGTTAAAGTTTCTTACAT+AGG - chr8_1:66426727-66426746 Msa1208380:intron 25.0%
! TAAATCTGTAACTAATTGCA+TGG - chr8_1:66426955-66426974 Msa1208380:intron 25.0%
! TTCATTGCAATTAGTTATAC+TGG - chr8_1:66426982-66427001 Msa1208380:intron 25.0%
! TAGAAATCAAATTCCCATTT+CGG - chr8_1:66427043-66427062 Msa1208380:intron 25.0%
!! AAAAGAGACTGAAAATTTTC+AGG + chr8_1:66427324-66427343 None:intergenic 25.0%
! TGGATTTAAATTATTTGCAG+GGG + chr8_1:66427881-66427900 None:intergenic 25.0%
!!! GTAGTTTCTGTTGTTTTTGA+GGG + chr8_1:66423617-66423636 None:intergenic 30.0%
!!! AGTAGTTTCTGTTGTTTTTG+AGG + chr8_1:66423618-66423637 None:intergenic 30.0%
!!! GAGGATTTGGTTTTGTTTTT+GGG + chr8_1:66423717-66423736 None:intergenic 30.0%
!!! AGAGGATTTGGTTTTGTTTT+TGG + chr8_1:66423718-66423737 None:intergenic 30.0%
ATGATGAAACAAAGAGGATT+TGG + chr8_1:66423730-66423749 None:intergenic 30.0%
!! TTGATGATGATGAAACAAAG+AGG + chr8_1:66423736-66423755 None:intergenic 30.0%
CAGAAAAGTGAATAAGGAAA+AGG + chr8_1:66423881-66423900 None:intergenic 30.0%
ACTTATGCAAGTAGTTATCT+CGG - chr8_1:66424421-66424440 Msa1208380:intron 30.0%
TAGTTATCTCGGATGATTTA+GGG - chr8_1:66424432-66424451 Msa1208380:intron 30.0%
TATTATTCATAAGCTTGTCG+AGG - chr8_1:66424521-66424540 Msa1208380:intron 30.0%
TAAGAAACTAATGGCATGTT+TGG + chr8_1:66424613-66424632 None:intergenic 30.0%
TAAGTTCTCTTTAATGGTGT+TGG - chr8_1:66424787-66424806 Msa1208380:intron 30.0%
TGCTTCTAATGCATGAAAAA+AGG + chr8_1:66424940-66424959 None:intergenic 30.0%
CTTGCAAAAGATAAAAGAGA+TGG + chr8_1:66425144-66425163 None:intergenic 30.0%
GTAGGATCAATAAGAGAAAA+TGG + chr8_1:66425177-66425196 None:intergenic 30.0%
TCTCTTATTGATCCTACAAT+TGG - chr8_1:66425180-66425199 Msa1208380:CDS 30.0%
CTCTTATTGATCCTACAATT+GGG - chr8_1:66425181-66425200 Msa1208380:CDS 30.0%
AGTATACTTGATACTCATCT+TGG - chr8_1:66425207-66425226 Msa1208380:CDS 30.0%
CATCTTCAACTATTGGAATA+TGG + chr8_1:66425329-66425348 None:intergenic 30.0%
TTATATATGACATGGTACTG+TGG - chr8_1:66426138-66426157 Msa1208380:CDS 30.0%
!! GTGTCACTTATTTCTTACAT+AGG - chr8_1:66426708-66426727 Msa1208380:intron 30.0%
CTTACATAGGTTAAAGTTAC+AGG - chr8_1:66426740-66426759 Msa1208380:intron 30.0%
TGTCTATGTTTATTTGATGC+AGG - chr8_1:66426794-66426813 Msa1208380:intron 30.0%
AGACAGAGAAAAAGAATTGA+AGG - chr8_1:66426845-66426864 Msa1208380:intron 30.0%
ATCAAACTCATACTTTCCTA+TGG - chr8_1:66427019-66427038 Msa1208380:intron 30.0%
! GGAATTTGATTTCTATCCAT+AGG + chr8_1:66427038-66427057 None:intergenic 30.0%
! TTGCATTTTCATAAACTGTC+AGG - chr8_1:66427078-66427097 Msa1208380:intron 30.0%
TTTCATAAACTGTCAGGAAT+TGG - chr8_1:66427084-66427103 Msa1208380:intron 30.0%
! CTAGCAGCATATTTTATAAC+AGG + chr8_1:66427256-66427275 None:intergenic 30.0%
! TAGTGTTTTCCTCCTTTATT+TGG - chr8_1:66427273-66427292 Msa1208380:intron 30.0%
! CTTTTCGACTTCATAGATAT+TGG - chr8_1:66427339-66427358 Msa1208380:intron 30.0%
!! TTGTTTCTGTTGGTTATTGT+TGG - chr8_1:66427476-66427495 Msa1208380:intron 30.0%
! TGTTTCTGTTGGTTATTGTT+GGG - chr8_1:66427477-66427496 Msa1208380:intron 30.0%
AAACAAAGCTTCTTGCTTAT+TGG + chr8_1:66427577-66427596 None:intergenic 30.0%
!!! TAAGCAAGAAGCTTTGTTTT+TGG - chr8_1:66427578-66427597 Msa1208380:intron 30.0%
!!! CTTCTAGCTTTTTTTCACAA+GGG + chr8_1:66427616-66427635 None:intergenic 30.0%
!!! TCTTCTAGCTTTTTTTCACA+AGG + chr8_1:66427617-66427636 None:intergenic 30.0%
!! AAGAACGTTGCATTTTAATC+TGG - chr8_1:66427688-66427707 Msa1208380:CDS 30.0%
ACTTATCATGGAAATATTCG+TGG - chr8_1:66427769-66427788 Msa1208380:five_prime_UTR 30.0%
! TATGATCCTTGCTGTCAATT+TGG - chr8_1:66424243-66424262 Msa1208380:intron 35.0%
! ATGATCCTTGCTGTCAATTT+GGG - chr8_1:66424244-66424263 Msa1208380:intron 35.0%
!! TCTTGTTGACTTAAAGCTAG+AGG - chr8_1:66424268-66424287 Msa1208380:CDS 35.0%
GTAGTTATCTCGGATGATTT+AGG - chr8_1:66424431-66424450 Msa1208380:intron 35.0%
AACTAATGGCATGTTTGGAT+TGG + chr8_1:66424608-66424627 None:intergenic 35.0%
TTAGCGTTAGATCTTACTCT+TGG - chr8_1:66424657-66424676 Msa1208380:CDS 35.0%
TAGAAGCAAACTAGCATAAG+AGG + chr8_1:66424717-66424736 None:intergenic 35.0%
GTTAATGCATATTTCAGCGA+AGG - chr8_1:66424888-66424907 Msa1208380:CDS 35.0%
AGAAATGTACCTTGTCACTA+TGG - chr8_1:66424971-66424990 Msa1208380:CDS 35.0%
AATGTAACACCATAGTGACA+AGG + chr8_1:66424983-66425002 None:intergenic 35.0%
TCTATCCATGAAATCTCCTT+GGG + chr8_1:66425093-66425112 None:intergenic 35.0%
ATCTATCCATGAAATCTCCT+TGG + chr8_1:66425094-66425113 None:intergenic 35.0%
GCAAAAGATAAAAGAGATGG+AGG + chr8_1:66425141-66425160 None:intergenic 35.0%
AGTATACTTCTCCCAATTGT+AGG + chr8_1:66425195-66425214 None:intergenic 35.0%
CCAGTAACATCTTCAACTAT+TGG + chr8_1:66425336-66425355 None:intergenic 35.0%
CCAATAGTTGAAGATGTTAC+TGG - chr8_1:66425333-66425352 Msa1208380:intron 35.0%
TCTGGTAAATTCTCCAATGT+GGG + chr8_1:66425483-66425502 None:intergenic 35.0%
ATCTGGTAAATTCTCCAATG+TGG + chr8_1:66425484-66425503 None:intergenic 35.0%
CATATAAAATTAGAGGAGCC+CGG + chr8_1:66425635-66425654 None:intergenic 35.0%
! AACTTAAAGGTGTACCTTCA+AGG + chr8_1:66425766-66425785 None:intergenic 35.0%
TTTCATGTCAGAAGCAATTC+AGG + chr8_1:66425902-66425921 None:intergenic 35.0%
!! TTAGGGGAAGTATCTTCAAA+TGG - chr8_1:66426018-66426037 Msa1208380:CDS 35.0%
TGGTACTGTGGTAGTAAATA+TGG - chr8_1:66426150-66426169 Msa1208380:CDS 35.0%
ATATGGTCATTGTAGATTGC+AGG - chr8_1:66426167-66426186 Msa1208380:CDS 35.0%
TGAAGAAGATGAAGATGTAG+AGG - chr8_1:66426212-66426231 Msa1208380:CDS 35.0%
AGGACTATACTTCATCAGAT+GGG + chr8_1:66426386-66426405 None:intergenic 35.0%
AAGGACTATACTTCATCAGA+TGG + chr8_1:66426387-66426406 None:intergenic 35.0%
TTTCAATATTTACAGTGGGG+TGG - chr8_1:66426483-66426502 Msa1208380:intron 35.0%
ACATGAGTTCATGCAGAATA+GGG - chr8_1:66426602-66426621 Msa1208380:CDS 35.0%
! AAGTTACAGGTTTTACGAGA+TGG - chr8_1:66426753-66426772 Msa1208380:intron 35.0%
TTTACGAGATGGTCTAATTG+TGG - chr8_1:66426764-66426783 Msa1208380:intron 35.0%
AAAAGAATTGAAGGCCATTG+CGG - chr8_1:66426854-66426873 Msa1208380:intron 35.0%
AGAATCTCAAAGAAAGTTGC+AGG - chr8_1:66426917-66426936 Msa1208380:intron 35.0%
GCTTATGAGATCTTAGGAAT+CGG + chr8_1:66427219-66427238 None:intergenic 35.0%
TTATAACAGGCATCTTTACC+TGG + chr8_1:66427243-66427262 None:intergenic 35.0%
ATGTATGCACCAAATAAAGG+AGG + chr8_1:66427285-66427304 None:intergenic 35.0%
AGCATGTATGCACCAAATAA+AGG + chr8_1:66427288-66427307 None:intergenic 35.0%
CTTCATAGATATTGGTAGAC+AGG - chr8_1:66427347-66427366 Msa1208380:intron 35.0%
AGAATGATAGGCAGAAAGTT+GGG + chr8_1:66427405-66427424 None:intergenic 35.0%
AAGAATGATAGGCAGAAAGT+TGG + chr8_1:66427406-66427425 None:intergenic 35.0%
! GTTTCTGTTGGTTATTGTTG+GGG - chr8_1:66427478-66427497 Msa1208380:intron 35.0%
! TGCAACGTTCTTTTGTGTAT+TGG + chr8_1:66427680-66427699 None:intergenic 35.0%
GATTGCGATTTCGATTTCCA+TGG - chr8_1:66423772-66423791 Msa1208380:three_prime_UTR 40.0%
GTGTCAATCGTCTCTTGATT+AGG + chr8_1:66423803-66423822 None:intergenic 40.0%
TGCAATTGGTTGAGAAACAC+CGG + chr8_1:66423840-66423859 None:intergenic 40.0%
! TGAAGCTTTTGCAGTGCAAT+TGG + chr8_1:66423854-66423873 None:intergenic 40.0%
AATTGCACTGCAAAAGCTTC+AGG - chr8_1:66423853-66423872 Msa1208380:three_prime_UTR 40.0%
AAGATCCCAAATTGACAGCA+AGG + chr8_1:66424252-66424271 None:intergenic 40.0%
! GTTCTCTTTAATGGTGTTGG+AGG - chr8_1:66424790-66424809 Msa1208380:intron 40.0%
!!! TTTTTTTCATGGCAGGAGCA+TGG - chr8_1:66424846-66424865 Msa1208380:CDS 40.0%
CGAAGGAGACAGAAATTTGA+TGG - chr8_1:66424905-66424924 Msa1208380:CDS 40.0%
! TGCATGAAAAAAGGCATACC+TGG + chr8_1:66424931-66424950 None:intergenic 40.0%
CTATCCATGAAATCTCCTTG+GGG + chr8_1:66425092-66425111 None:intergenic 40.0%
TCTCTTGGATGAGTGACAAA+CGG + chr8_1:66425249-66425268 None:intergenic 40.0%
GCAAATTCCGATAGAGGATA+AGG - chr8_1:66425275-66425294 Msa1208380:CDS 40.0%
ATTCCGATAGAGGATAAGGA+TGG - chr8_1:66425279-66425298 Msa1208380:CDS 40.0%
CTACCATCCTTATCCTCTAT+CGG + chr8_1:66425285-66425304 None:intergenic 40.0%
ATGACACTCCCATGTATATC+TGG + chr8_1:66425378-66425397 None:intergenic 40.0%
CTGTCAGGTGAAGAATTAGT+CGG + chr8_1:66425441-66425460 None:intergenic 40.0%
TCTATGTCATTGCTGCTATC+TGG + chr8_1:66425501-66425520 None:intergenic 40.0%
AAAAGTGATTGCCTTGGGTT+AGG + chr8_1:66425708-66425727 None:intergenic 40.0%
! CCTCTAAAAGTGATTGCCTT+GGG + chr8_1:66425713-66425732 None:intergenic 40.0%
! TCCTCTAAAAGTGATTGCCT+TGG + chr8_1:66425714-66425733 None:intergenic 40.0%
TGCAGTTTCATTGTCCTTGA+AGG - chr8_1:66425749-66425768 Msa1208380:CDS 40.0%
! CTGTTCTGGTTGTAAAACAC+TGG + chr8_1:66425830-66425849 None:intergenic 40.0%
TAAAGTCAAAGTTACGGCAC+CGG + chr8_1:66425854-66425873 None:intergenic 40.0%
TCAACTCCTTGTGTCTTAGA+TGG + chr8_1:66425997-66426016 None:intergenic 40.0%
! AAGACACAAGGAGTTGACTT+AGG - chr8_1:66426000-66426019 Msa1208380:CDS 40.0%
! AGACACAAGGAGTTGACTTA+GGG - chr8_1:66426001-66426020 Msa1208380:CDS 40.0%
!! GGGAAGTATCTTCAAATGGA+AGG - chr8_1:66426022-66426041 Msa1208380:CDS 40.0%
AAGGAATTGTCATTATGCGG+AGG + chr8_1:66426363-66426382 None:intergenic 40.0%
GGGAAGGAATTGTCATTATG+CGG + chr8_1:66426366-66426385 None:intergenic 40.0%
CTATACTTCATCAGATGGGA+AGG + chr8_1:66426382-66426401 None:intergenic 40.0%
TGATGAAGCAGTAATGCTTG+AGG - chr8_1:66426524-66426543 Msa1208380:intron 40.0%
CTATTCTGCATGAACTCATG+TGG + chr8_1:66426603-66426622 None:intergenic 40.0%
CACATGAGTTCATGCAGAAT+AGG - chr8_1:66426601-66426620 Msa1208380:CDS 40.0%
CATGAGTTCATGCAGAATAG+GGG - chr8_1:66426603-66426622 Msa1208380:CDS 40.0%
TGTCTGCTTCTAATGATGCA+AGG + chr8_1:66426830-66426849 None:intergenic 40.0%
AGAGTAAGCAACACCGAAAT+GGG + chr8_1:66427059-66427078 None:intergenic 40.0%
AAGAGTAAGCAACACCGAAA+TGG + chr8_1:66427060-66427079 None:intergenic 40.0%
CTGATGGTAAAAATGCCAGA+TGG - chr8_1:66427178-66427197 Msa1208380:intron 40.0%
! GCGTGTGCTTTTACTTATCA+TGG - chr8_1:66427757-66427776 Msa1208380:five_prime_UTR 40.0%
! ATTCGTGGATGCTTTGTTGT+AGG - chr8_1:66427784-66427803 Msa1208380:five_prime_UTR 40.0%
ATTATTTGCAGGGGAAGAGA+TGG + chr8_1:66427872-66427891 None:intergenic 40.0%
CTTCTAAACTCTACGGCGTA+CGG - chr8_1:66423644-66423663 Msa1208380:three_prime_UTR 45.0%
GACACATTCATCAGCATCAC+CGG - chr8_1:66423818-66423837 Msa1208380:three_prime_UTR 45.0%
! GAGACAGAAATTTGATGGCC+AGG - chr8_1:66424910-66424929 Msa1208380:CDS 45.0%
CATGAAATCTCCTTGGGGAA+CGG + chr8_1:66425087-66425106 None:intergenic 45.0%
! TCATCTTGGTGCAACAAACC+AGG - chr8_1:66425221-66425240 Msa1208380:CDS 45.0%
GTTTGTCACTCATCCAAGAG+AGG - chr8_1:66425248-66425267 Msa1208380:CDS 45.0%
TCACTCATCCAAGAGAGGTA+AGG - chr8_1:66425253-66425272 Msa1208380:CDS 45.0%
GGAATTTGCCTTACCTCTCT+TGG + chr8_1:66425264-66425283 None:intergenic 45.0%
GGTAAGGCAAATTCCGATAG+AGG - chr8_1:66425269-66425288 Msa1208380:CDS 45.0%
AGTCAATCAACTCCTCAAGC+TGG - chr8_1:66425303-66425322 Msa1208380:CDS 45.0%
ATTGGAATATGGCCAGCTTG+AGG + chr8_1:66425318-66425337 None:intergenic 45.0%
CCCATGTATATCTGGACCTT+GGG + chr8_1:66425370-66425389 None:intergenic 45.0%
CCCAAGGTCCAGATATACAT+GGG - chr8_1:66425367-66425386 Msa1208380:intron 45.0%
TCCCATGTATATCTGGACCT+TGG + chr8_1:66425371-66425390 None:intergenic 45.0%
AATGATTCGTGCAGCCATTG+AGG - chr8_1:66425527-66425546 Msa1208380:CDS 45.0%
TTGTATTTCCCACATGGTGC+AGG - chr8_1:66425665-66425684 Msa1208380:intron 45.0%
!! CCCAAGGCAATCACTTTTAG+AGG - chr8_1:66425710-66425729 Msa1208380:intron 45.0%
! GTTTTACAACCAGAACAGCC+CGG - chr8_1:66425832-66425851 Msa1208380:intron 45.0%
AAAGTCAAAGTTACGGCACC+GGG + chr8_1:66425853-66425872 None:intergenic 45.0%
! CTTTTTCTTGCTCTGCTGTC+TGG + chr8_1:66425930-66425949 None:intergenic 45.0%
CAGCAGAGCAAGAAAAAGCA+CGG - chr8_1:66425932-66425951 Msa1208380:CDS 45.0%
! GACACAAGGAGTTGACTTAG+GGG - chr8_1:66426002-66426021 Msa1208380:CDS 45.0%
AGATGTAGAGGAGATGCCTT+TGG - chr8_1:66426224-66426243 Msa1208380:CDS 45.0%
TAGAGGAGATGCCTTTGGTT+AGG - chr8_1:66426229-66426248 Msa1208380:CDS 45.0%
AGATGCCTTTGGTTAGGAAC+AGG - chr8_1:66426235-66426254 Msa1208380:CDS 45.0%
GTAGACCTGTTCCTAACCAA+AGG + chr8_1:66426243-66426262 None:intergenic 45.0%
!! ATGTGTCACTTAGCTCCACA+GGG - chr8_1:66426268-66426287 Msa1208380:CDS 45.0%
ATTAATCGAGTCCAGCACAC+TGG - chr8_1:66426308-66426327 Msa1208380:CDS 45.0%
ATGCTTGAGGCTGCAATGTT+CGG - chr8_1:66426537-66426556 Msa1208380:intron 45.0%
ACTCATGTGGTGCATAAGCA+CGG + chr8_1:66426590-66426609 None:intergenic 45.0%
AAGAAAGTTGCAGGAAGAGC+AGG - chr8_1:66426926-66426945 Msa1208380:intron 45.0%
TGGTGGTAGAGAGACTTCTT+TGG + chr8_1:66427125-66427144 None:intergenic 45.0%
TCATCATCAGAGGATGGTTC+TGG + chr8_1:66427145-66427164 None:intergenic 45.0%
TGACAGTGCTGTGAATCTGA+TGG - chr8_1:66427162-66427181 Msa1208380:intron 45.0%
CCTGGAGCTTATGAGATCTT+AGG + chr8_1:66427225-66427244 None:intergenic 45.0%
CCTAAGATCTCATAAGCTCC+AGG - chr8_1:66427222-66427241 Msa1208380:intron 45.0%
CAAACCAAGCAGTTACAGAC+TGG - chr8_1:66427371-66427390 Msa1208380:intron 45.0%
AGCACTTTCCTCAACACCAA+AGG + chr8_1:66427529-66427548 None:intergenic 45.0%
!! TGAGGAAAGTGCTGTGACAT+TGG - chr8_1:66427536-66427555 Msa1208380:intron 45.0%
! CTCTTGATTAGGTGTCGCCA+TGG + chr8_1:66423792-66423811 None:intergenic 50.0%
! CGGATGATTTAGGGCCTGTT+TGG - chr8_1:66424441-66424460 Msa1208380:intron 50.0%
!! TTTTCATGGCAGGAGCATGG+TGG - chr8_1:66424849-66424868 Msa1208380:CDS 50.0%
CGTTCCCCAAGGAGATTTCA+TGG - chr8_1:66425085-66425104 Msa1208380:intron 50.0%
ACTGGAACTGTTCATGCCCA+AGG - chr8_1:66425351-66425370 Msa1208380:intron 50.0%
GCCCAAGGTCCAGATATACA+TGG - chr8_1:66425366-66425385 Msa1208380:intron 50.0%
GGTGAAGAATTAGTCGGAGC+AGG + chr8_1:66425435-66425454 None:intergenic 50.0%
!! TTCTCCAATGTGGGAGCACT+AGG + chr8_1:66425474-66425493 None:intergenic 50.0%
! ATTTTCCTCAGCCTCTCGTC+TGG + chr8_1:66425556-66425575 None:intergenic 50.0%
TGCAGGACGTGAGTGAATCT+GGG - chr8_1:66425682-66425701 Msa1208380:intron 50.0%
AAAGCACGGCGTGTACAAGA+AGG - chr8_1:66425946-66425965 Msa1208380:CDS 50.0%
CGTGTACAAGAAGGTGATGC+TGG - chr8_1:66425955-66425974 Msa1208380:CDS 50.0%
GAATTCATTGCAGCAGCCAC+AGG + chr8_1:66426078-66426097 None:intergenic 50.0%
GGTCATTGTAGATTGCAGGC+AGG - chr8_1:66426171-66426190 Msa1208380:CDS 50.0%
!! CATGTGTCACTTAGCTCCAC+AGG - chr8_1:66426267-66426286 Msa1208380:CDS 50.0%
! TGCAATGTTCGGTGGAATCC+CGG - chr8_1:66426548-66426567 Msa1208380:CDS 50.0%
AGGGTGATATGCAAGAGGTG+CGG + chr8_1:66426643-66426662 None:intergenic 50.0%
GAAGGAGGGTGATATGCAAG+AGG + chr8_1:66426648-66426667 None:intergenic 50.0%
TCACCCTCCTTCACCATCAT+TGG - chr8_1:66426656-66426675 Msa1208380:intron 50.0%
! CCTCCAATGATGGTGAAGGA+GGG + chr8_1:66426662-66426681 None:intergenic 50.0%
! TGAGCCTCCAATGATGGTGA+AGG + chr8_1:66426666-66426685 None:intergenic 50.0%
GCGCTTGATAAGGGAACAAC+AGG - chr8_1:66426686-66426705 Msa1208380:intron 50.0%
!! TCATCAGAGGATGGTTCTGG+TGG + chr8_1:66427142-66427161 None:intergenic 50.0%
GCACTGTCATCATCAGAGGA+TGG + chr8_1:66427151-66427170 None:intergenic 50.0%
CACAGCACTGTCATCATCAG+AGG + chr8_1:66427155-66427174 None:intergenic 50.0%
CTCACCAGTCTGTAACTGCT+TGG + chr8_1:66427378-66427397 None:intergenic 50.0%
! CTGTTGGTTATTGTTGGGGC+AGG - chr8_1:66427482-66427501 Msa1208380:intron 50.0%
GGCAGGTAAGACCATATCCT+AGG - chr8_1:66427499-66427518 Msa1208380:intron 50.0%
GCTGTGACATTGGACGAACT+TGG - chr8_1:66427546-66427565 Msa1208380:intron 50.0%
GAAATCTCCTTGGGGAACGG+CGG + chr8_1:66425084-66425103 None:intergenic 55.0%
CTAGGTCTCGCACTACTGTC+AGG + chr8_1:66425456-66425475 None:intergenic 55.0%
GAGACCTAGTGCTCCCACAT+TGG - chr8_1:66425467-66425486 Msa1208380:CDS 55.0%
CTCTCGTCTGGATGCCTCAA+TGG + chr8_1:66425544-66425563 None:intergenic 55.0%
! CATTGAGGCATCCAGACGAG+AGG - chr8_1:66425542-66425561 Msa1208380:CDS 55.0%
ACTCACGTCCTGCACCATGT+GGG + chr8_1:66425676-66425695 None:intergenic 55.0%
GTGCAGGACGTGAGTGAATC+TGG - chr8_1:66425681-66425700 Msa1208380:intron 55.0%
GTGAATCTGGGCCTAACCCA+AGG - chr8_1:66425694-66425713 Msa1208380:intron 55.0%
GAAACTGCACGAGCAAGCTC+AGG + chr8_1:66425738-66425757 None:intergenic 55.0%
! AGGTGATGCTGGAGCACCTA+CGG - chr8_1:66425966-66425985 Msa1208380:CDS 55.0%
! GCAGGGCCATCTAAGACACA+AGG - chr8_1:66425988-66426007 Msa1208380:CDS 55.0%
TCCTGCATGTTGTCCACCTG+TGG - chr8_1:66426059-66426078 Msa1208380:CDS 55.0%
TTCATTGCAGCAGCCACAGG+TGG + chr8_1:66426075-66426094 None:intergenic 55.0%
TCACTTAGCTCCACAGGGTC+AGG - chr8_1:66426273-66426292 Msa1208380:CDS 55.0%
AGCATCTTTGCCTGACCCTG+TGG + chr8_1:66426286-66426305 None:intergenic 55.0%
ACTGGCAGGCACAACAGTTC+CGG - chr8_1:66426326-66426345 Msa1208380:CDS 55.0%
CTTGAGGCTGCAATGTTCGG+TGG - chr8_1:66426540-66426559 Msa1208380:CDS 55.0%
! ATGTTCGGTGGAATCCCGGA+AGG - chr8_1:66426552-66426571 Msa1208380:CDS 55.0%
GGCGATAACCACTTCCTTCC+GGG + chr8_1:66426569-66426588 None:intergenic 55.0%
CGGCGATAACCACTTCCTTC+CGG + chr8_1:66426570-66426589 None:intergenic 55.0%
! GGGTGATATGCAAGAGGTGC+GGG + chr8_1:66426642-66426661 None:intergenic 55.0%
CCCTCCTTCACCATCATTGG+AGG - chr8_1:66426659-66426678 Msa1208380:intron 55.0%
! GCCTCCAATGATGGTGAAGG+AGG + chr8_1:66426663-66426682 None:intergenic 55.0%
!! AAGCGCTGAGCCTCCAATGA+TGG + chr8_1:66426672-66426691 None:intergenic 55.0%
TGGAGGCTCAGCGCTTGATA+AGG - chr8_1:66426676-66426695 Msa1208380:intron 55.0%
GGAGGCTCAGCGCTTGATAA+GGG - chr8_1:66426677-66426696 Msa1208380:intron 55.0%
AGCAACCTCAGCTTCCGCAA+TGG + chr8_1:66426871-66426890 None:intergenic 55.0%
! CCAAAGGCACGCCTAGGATA+TGG + chr8_1:66427513-66427532 None:intergenic 55.0%
CCATATCCTAGGCGTGCCTT+TGG - chr8_1:66427510-66427529 Msa1208380:intron 55.0%
! TCAACACCAAAGGCACGCCT+AGG + chr8_1:66427519-66427538 None:intergenic 55.0%
!! TAGGCGTGCCTTTGGTGTTG+AGG - chr8_1:66427518-66427537 Msa1208380:intron 55.0%
GCAGAGCTGTCATGAGAGGC+CGG + chr8_1:66425062-66425081 None:intergenic 60.0%
GATGAGTGACAAACGGCGCC+TGG + chr8_1:66425242-66425261 None:intergenic 60.0%
CACTCACGTCCTGCACCATG+TGG + chr8_1:66425677-66425696 None:intergenic 60.0%
! ATGCTGGAGCACCTACGGCA+GGG - chr8_1:66425971-66425990 Msa1208380:CDS 60.0%
GTCTTAGATGGCCCTGCCGT+AGG + chr8_1:66425985-66426004 None:intergenic 60.0%
GCCACAGGTGGACAACATGC+AGG + chr8_1:66426063-66426082 None:intergenic 60.0%
ATCGAGTCCAGCACACTGGC+AGG - chr8_1:66426312-66426331 Msa1208380:CDS 60.0%
TGTTGTGCCTGCCAGTGTGC+TGG + chr8_1:66426322-66426341 None:intergenic 60.0%
!! TGCGGAGGACTGCTGCTTTC+CGG + chr8_1:66426348-66426367 None:intergenic 60.0%
GTGGGGTGGCATGTCTTCAG+TGG - chr8_1:66426497-66426516 Msa1208380:intron 60.0%
GGTGGAATCCCGGAAGGAAG+TGG - chr8_1:66426558-66426577 Msa1208380:CDS 60.0%
! TATGCAAGAGGTGCGGGCTG+AGG + chr8_1:66426636-66426655 None:intergenic 60.0%
GAAGGCCATTGCGGAAGCTG+AGG - chr8_1:66426863-66426882 Msa1208380:intron 60.0%
AGCTGAGGTTGCTCGCGAAG+AGG - chr8_1:66426878-66426897 Msa1208380:intron 60.0%
TTAGGAATCGGCGCCCACGA+CGG + chr8_1:66427207-66427226 None:intergenic 60.0%
GGCGGCAGAGCTGTCATGAG+AGG + chr8_1:66425066-66425085 None:intergenic 65.0%
GGCATCCAGACGAGAGGCTG+AGG - chr8_1:66425548-66425567 Msa1208380:CDS 65.0%
! GTTACGGCACCGGGCTGTTC+TGG + chr8_1:66425844-66425863 None:intergenic 65.0%
! GATGCTGGAGCACCTACGGC+AGG - chr8_1:66425970-66425989 Msa1208380:CDS 65.0%
! CAAGAGGTGCGGGCTGAGGA+TGG + chr8_1:66426632-66426651 None:intergenic 65.0%
ATGCCAGATGGCAGCCGTCG+TGG - chr8_1:66427190-66427209 Msa1208380:intron 65.0%
TGCCAGATGGCAGCCGTCGT+GGG - chr8_1:66427191-66427210 Msa1208380:intron 65.0%
AGCTCTGCCGCCGTTCCCCA+AGG - chr8_1:66425074-66425093 Msa1208380:intron 70.0%
CGCCCACGACGGCTGCCATC+TGG + chr8_1:66427196-66427215 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 66423593 66427907 66423593 ID=Msa1208380;Name=Msa1208380
chr8_1 mRNA 66423593 66427907 66423593 ID=Msa1208380-mRNA-1;Parent=Msa1208380;Name=Msa1208380-mRNA-1;_AED=0.12;_eAED=0.13;_QI=198|0.8|0.81|1|1|1|11|296|597
chr8_1 exon 66423593 66423996 66423593 ID=Msa1208380-mRNA-1:exon:21895;Parent=Msa1208380-mRNA-1
chr8_1 exon 66424108 66424164 66424108 ID=Msa1208380-mRNA-1:exon:21894;Parent=Msa1208380-mRNA-1
chr8_1 exon 66424257 66424400 66424257 ID=Msa1208380-mRNA-1:exon:21893;Parent=Msa1208380-mRNA-1
chr8_1 exon 66424553 66424684 66424553 ID=Msa1208380-mRNA-1:exon:21892;Parent=Msa1208380-mRNA-1
chr8_1 exon 66424793 66425002 66424793 ID=Msa1208380-mRNA-1:exon:21891;Parent=Msa1208380-mRNA-1
chr8_1 exon 66425105 66425336 66425105 ID=Msa1208380-mRNA-1:exon:21890;Parent=Msa1208380-mRNA-1
chr8_1 exon 66425457 66425569 66425457 ID=Msa1208380-mRNA-1:exon:21889;Parent=Msa1208380-mRNA-1
chr8_1 exon 66425730 66425813 66425730 ID=Msa1208380-mRNA-1:exon:21888;Parent=Msa1208380-mRNA-1
chr8_1 exon 66425895 66426424 66425895 ID=Msa1208380-mRNA-1:exon:21887;Parent=Msa1208380-mRNA-1
chr8_1 exon 66426540 66426639 66426540 ID=Msa1208380-mRNA-1:exon:21886;Parent=Msa1208380-mRNA-1
chr8_1 exon 66427626 66427907 66427626 ID=Msa1208380-mRNA-1:exon:21885;Parent=Msa1208380-mRNA-1
chr8_1 five_prime_UTR 66427710 66427907 66427710 ID=Msa1208380-mRNA-1:five_prime_utr;Parent=Msa1208380-mRNA-1
chr8_1 CDS 66427626 66427709 66427626 ID=Msa1208380-mRNA-1:cds;Parent=Msa1208380-mRNA-1
chr8_1 CDS 66426540 66426639 66426540 ID=Msa1208380-mRNA-1:cds;Parent=Msa1208380-mRNA-1
chr8_1 CDS 66425895 66426424 66425895 ID=Msa1208380-mRNA-1:cds;Parent=Msa1208380-mRNA-1
chr8_1 CDS 66425730 66425813 66425730 ID=Msa1208380-mRNA-1:cds;Parent=Msa1208380-mRNA-1
chr8_1 CDS 66425457 66425569 66425457 ID=Msa1208380-mRNA-1:cds;Parent=Msa1208380-mRNA-1
chr8_1 CDS 66425105 66425336 66425105 ID=Msa1208380-mRNA-1:cds;Parent=Msa1208380-mRNA-1
chr8_1 CDS 66424793 66425002 66424793 ID=Msa1208380-mRNA-1:cds;Parent=Msa1208380-mRNA-1
chr8_1 CDS 66424553 66424684 66424553 ID=Msa1208380-mRNA-1:cds;Parent=Msa1208380-mRNA-1
chr8_1 CDS 66424257 66424400 66424257 ID=Msa1208380-mRNA-1:cds;Parent=Msa1208380-mRNA-1
chr8_1 CDS 66424108 66424164 66424108 ID=Msa1208380-mRNA-1:cds;Parent=Msa1208380-mRNA-1
chr8_1 CDS 66423889 66423996 66423889 ID=Msa1208380-mRNA-1:cds;Parent=Msa1208380-mRNA-1
chr8_1 three_prime_UTR 66423593 66423888 66423593 ID=Msa1208380-mRNA-1:three_prime_utr;Parent=Msa1208380-mRNA-1
Gene Sequence

>Msa1208380

ATGGCGACACCTAATCAAGAGACGATTGACACATTCATCAGCATCACCGGTGTTTCTCAACCAATTGCACTGCAAAAGCTTCAGGAGCATGGTGGTAGTCTTAATGAAGCTGTTAATGCATATTTCAGCGAAGGAGACAGAAATTTGATGGCCAGGTATGCCTTTTTTCATGCATTAGAAGCAACTCTGCCGCCGTTCCCCAAGGAGATTTCATGGATAGATGATCAACATGATGAAATTCTTAGACCTCCATCTCTTTTATCTTTTGCAAGAAATCTCGATCCATTTTCTCTTATTGATCCTACAATTGGGAGAAGTATACTTGATACTCATCTTGGTGCAACAAACCAGGCGCCGTTTGTCACTCATCCAAGAGAGGTAAGGCAAATTCCGATAGAGGATAAGGATGGTAGTCAATCAACTCCTCAAGCTGGCCATATTCCAATAGTTGAAGATGTTACTGGAACTGTTCATGCCCAAGGTCCAGATATACATGGGAGTGTCATAGTACTTGATGATGATGATGATGACAATACTCTGCCTGCTCCGACTAATTCTTCACCTGACAGTAGTGCGAGACCTAGTGCTCCCACATTGGAGAATTTACCAGATAGCAGCAATGACATAGAAGAAGAAATGATTCGTGCAGCCATTGAGGCATCCAGACGAGAGGCTGAGGAAAATTACAGCAATCATGAAGTTGACAGACAAATTGACGTGAGTGAATCTGGGCCTAACCCAAGGCAATCACTTTTAGAGGATCCTGAGCTTGCTCGTGCAGTTTCATTGTCCTTGAAGACAGCAGAGCAAGAAAAAGCACGGCGTGTACAAGAAGGTGATGCTGGAGCACCTACGGCAGGGCCATCTAAGACACAAGGAGTTGACTTAGGGGAAGTATCTTCAAATGGAAGTAAATATGGTCATTGTAGATTGCAGGCAGGAGAAGATGAAGATGAAGATGAAGAAGATGAAGATGTAGAGGAGATGCCTTTGGTTAGGAACAGGTCTACTAGACATGTGTCACTTAGCTCCACAGGGTCAGGCAAAGATGCTGAATTAATCGAGTCCAGCACACTGGCAGGCACAACAGTTCCGGAAAGCAGCAGTCCTCCGCATAATGACAATTCCTTCCCATCTGATGAATGGGGTGGCATGTCTTCAGTGGAACATGATGAAGCAGTAATGCTTGAGGCTGCAATGTTCGGTGGAATCCCGGAAGGAAGTGGTTATCGCCGTGCTTATGCACCACATGAGTTCATGCAGAATAGGGGTTTCCATCCTCAGCCCGCACCTCTTGCATATCACCCTCCTTCACCATCATTGGAGGCTCAGCGCTTGATAAGGGAACAACAGGATGATGAATACCTTGCATCATTAGAAGCAGACAGAGAAAAAGAATTGAAGGCCATTGCGGAAGCTGAGGTTGCTCGCGAAGAGGAAAAACAGAGAGCAGAAGAATCTCAAAGAAAGTTGCAGGAAGAGCAGGAATTGGAAGCACAGTTAGCTGCCAAAGAAGTCTCTCTACCACCAGAACCATCCTCTGATGATGACAGTGCTGTGAATCTGATGGTAAAAATGCCAGATGGCAGCCGTCGTGGGCGCCGATTCCTAAGATCTCATAAGCTCCAGTCTCTTTTCGACTTCATAGATATTGGTAGACAGGTCAAACCAAGCAGTTACAGACTGGTAAGACCATATCCTAGGCGTGCCTTTGGTGTTGAGGAAAGTGCTGTGACATTGGACGAACTTGGCTTAACCAATAAGCAAGAAGCTTTGTTTTTGGAGTTAGTCTGA
Protein sequence

>Msa1208380

MATPNQETIDTFISITGVSQPIALQKLQEHGGSLNEAVNAYFSEGDRNLMARYAFFHALEATLPPFPKEISWIDDQHDEILRPPSLLSFARNLDPFSLIDPTIGRSILDTHLGATNQAPFVTHPREVRQIPIEDKDGSQSTPQAGHIPIVEDVTGTVHAQGPDIHGSVIVLDDDDDDNTLPAPTNSSPDSSARPSAPTLENLPDSSNDIEEEMIRAAIEASRREAEENYSNHEVDRQIDVSESGPNPRQSLLEDPELARAVSLSLKTAEQEKARRVQEGDAGAPTAGPSKTQGVDLGEVSSNGSKYGHCRLQAGEDEDEDEEDEDVEEMPLVRNRSTRHVSLSSTGSGKDAELIESSTLAGTTVPESSSPPHNDNSFPSDEWGGMSSVEHDEAVMLEAAMFGGIPEGSGYRRAYAPHEFMQNRGFHPQPAPLAYHPPSPSLEAQRLIREQQDDEYLASLEADREKELKAIAEAEVAREEEKQRAEESQRKLQEEQELEAQLAAKEVSLPPEPSSDDDSAVNLMVKMPDGSRRGRRFLRSHKLQSLFDFIDIGRQVKPSSYRLVRPYPRRAFGVEESAVTLDELGLTNKQEALFLELV*