AlfalfaGEDB | Msa1129250

M. sativa cultivar zhongmu-4 / Msa1129250

KEGG: K06176
GO: GO:0000154 GO:0000455 GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016556 GO:0016853 GO:0016866 GO:0022613 GO:0031118 GO:0031119 GO:0031120 GO:0031429 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0040031 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:1901360 GO:1902494 GO:1990481 GO:1990904
PFAM: PF01142.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1129250	AES82636.2	95.588	748	12	2	1	747	1	728	0.0	1461

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1129250	sp\|Q08647\|PUS7_YEAST	32.645	726	346	21	59	738	36	664	2.43e-101	329

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1129250	G7L1T8	95.588	748	12	2	1	747	1	728	0.0	1461

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007230	Msa1129250	0.800503	1.397738e-48	-8.615850e-47
Msa0024680	Msa1129250	0.822297	2.554704e-53	-8.615850e-47
Msa0027540	Msa1129250	0.836704	8.006670e-57	-8.615850e-47
Msa0028060	Msa1129250	0.836652	8.253041e-57	-8.615850e-47
Msa0030000	Msa1129250	0.804239	2.376701e-49	-8.615850e-47
Msa0030590	Msa1129250	0.832931	7.131561e-56	-8.615850e-47
Msa0032120	Msa1129250	0.844277	8.352224e-59	-8.615850e-47
Msa0032400	Msa1129250	0.841594	4.321811e-58	-8.615850e-47
Msa0038350	Msa1129250	-0.810264	1.256696e-50	-8.615850e-47
Msa0044220	Msa1129250	0.809694	1.667529e-50	-8.615850e-47

Showing 1 to 10 of 271 entries

Previous1 2 3 4 5…28Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1129250	MtrunA17_Chr7g0273921	98.263	403	6	1	1	402	1	403	0.0	818
Msa1129250	MtrunA17_Chr7g0273931	91.438	292	5	1	456	747	1	272	0.0	535

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1129250	AT3G04820.1	57.815	723	227	9	58	746	37	715	0.0	817

Showing 1 to 1 of 1 entries

Previous1Next

Find 172 sgRNAs with CRISPR-Local

Find 851 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTTAAAACAAAATCC+TGG	0.496973	7_3:+81269911	Msa1129250:CDS
AAAATGCTGGCAAGTTCCTT+AGG	0.459083	7_3:+81266963	Msa1129250:CDS
AAAATTTCAAGCACCATACA+GGG	0.612861	7_3:+81265519	Msa1129250:five_prime_UTR
AAACTCCACGGAAGCCAGGA+AGG	0.602329	7_3:-81265782	None:intergenic
AAACTTACCCTGGCATAGGA+AGG	0.605512	7_3:-81275635	None:intergenic
AAAGATACCAATGATGTTGC+TGG	0.386798	7_3:+81269688	Msa1129250:CDS
AAAGATACCCAGGAAGCTTT+GGG	0.362115	7_3:+81267790	Msa1129250:CDS
AAAGCCTGCAAGTAGTTTCC+AGG	0.358570	7_3:-81269929	None:intergenic
AAAGCTGCTGCAGATTCCTT+AGG	0.490229	7_3:+81269148	Msa1129250:CDS
AAATCCTGGAAACTACTTGC+AGG	0.424190	7_3:+81269925	Msa1129250:CDS

Showing 1 to 10 of 172 entries

Previous1 2 3 4 5…18Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATTTCAAGCACCATAC+AGG	+	chr7_3:81265518-81265537	Msa1129250:five_prime_UTR	30.0%
AAAATTTCAAGCACCATACA+GGG	+	chr7_3:81265519-81265538	Msa1129250:five_prime_UTR	30.0%
GTACATGAAGTAGATTTAGA+TGG	+	chr7_3:81265913-81265932	Msa1129250:CDS	30.0%
TCTGTGTTCTATGTTAGATT+TGG	+	chr7_3:81266351-81266370	Msa1129250:intron	30.0%
CTGTGTTCTATGTTAGATTT+GGG	+	chr7_3:81266352-81266371	Msa1129250:intron	30.0%
GTATGCTTCTTAAATCTATC+AGG	+	chr7_3:81266748-81266767	Msa1129250:intron	30.0%
GTTATCAGAAACTTTACCTA+AGG	-	chr7_3:81266982-81267001	None:intergenic	30.0%
TCTACTTTAAGTAGCAATTG+TGG	+	chr7_3:81267025-81267044	Msa1129250:intron	30.0%
CTACTTTAAGTAGCAATTGT+GGG	+	chr7_3:81267026-81267045	Msa1129250:intron	30.0%
TACTTTAAGTAGCAATTGTG+GGG	+	chr7_3:81267027-81267046	Msa1129250:intron	30.0%

Showing 1 to 10 of 851 entries

Previous1 2 3 4 5…86Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	81265499	81278459	81265499	ID=Msa1129250;Name=Msa1129250
chr7_3	mRNA	81265499	81278459	81265499	ID=Msa1129250-mRNA-1;Parent=Msa1129250;Name=Msa1129250-mRNA-1;_AED=0.18;_eAED=0.18;_QI=62\|0.85\|0.85\|0.95\|1\|1\|21\|411\|747
chr7_3	exon	81265499	81265814	81265499	ID=Msa1129250-mRNA-1:exon:23537;Parent=Msa1129250-mRNA-1
chr7_3	exon	81265897	81266005	81265897	ID=Msa1129250-mRNA-1:exon:23538;Parent=Msa1129250-mRNA-1
chr7_3	exon	81266129	81266329	81266129	ID=Msa1129250-mRNA-1:exon:23539;Parent=Msa1129250-mRNA-1
chr7_3	exon	81266770	81266984	81266770	ID=Msa1129250-mRNA-1:exon:23540;Parent=Msa1129250-mRNA-1
chr7_3	exon	81267768	81267840	81267768	ID=Msa1129250-mRNA-1:exon:23541;Parent=Msa1129250-mRNA-1
chr7_3	exon	81268568	81268624	81268568	ID=Msa1129250-mRNA-1:exon:23542;Parent=Msa1129250-mRNA-1
chr7_3	exon	81268749	81268828	81268749	ID=Msa1129250-mRNA-1:exon:23543;Parent=Msa1129250-mRNA-1
chr7_3	exon	81268915	81268977	81268915	ID=Msa1129250-mRNA-1:exon:23544;Parent=Msa1129250-mRNA-1
chr7_3	exon	81269117	81269204	81269117	ID=Msa1129250-mRNA-1:exon:23545;Parent=Msa1129250-mRNA-1
chr7_3	exon	81269419	81269485	81269419	ID=Msa1129250-mRNA-1:exon:23546;Parent=Msa1129250-mRNA-1
chr7_3	exon	81269668	81269756	81269668	ID=Msa1129250-mRNA-1:exon:23547;Parent=Msa1129250-mRNA-1
chr7_3	exon	81269908	81269981	81269908	ID=Msa1129250-mRNA-1:exon:23548;Parent=Msa1129250-mRNA-1
chr7_3	exon	81270769	81270833	81270769	ID=Msa1129250-mRNA-1:exon:23549;Parent=Msa1129250-mRNA-1
chr7_3	exon	81271023	81271195	81271023	ID=Msa1129250-mRNA-1:exon:23550;Parent=Msa1129250-mRNA-1
chr7_3	exon	81273035	81273094	81273035	ID=Msa1129250-mRNA-1:exon:23551;Parent=Msa1129250-mRNA-1
chr7_3	exon	81275582	81275649	81275582	ID=Msa1129250-mRNA-1:exon:23552;Parent=Msa1129250-mRNA-1
chr7_3	exon	81275773	81275833	81275773	ID=Msa1129250-mRNA-1:exon:23553;Parent=Msa1129250-mRNA-1
chr7_3	exon	81277114	81277151	81277114	ID=Msa1129250-mRNA-1:exon:23554;Parent=Msa1129250-mRNA-1
chr7_3	exon	81277273	81277341	81277273	ID=Msa1129250-mRNA-1:exon:23555;Parent=Msa1129250-mRNA-1
chr7_3	exon	81277451	81277760	81277451	ID=Msa1129250-mRNA-1:exon:23556;Parent=Msa1129250-mRNA-1
chr7_3	exon	81278019	81278459	81278019	ID=Msa1129250-mRNA-1:exon:23557;Parent=Msa1129250-mRNA-1
chr7_3	five_prime_UTR	81265499	81265560	81265499	ID=Msa1129250-mRNA-1:five_prime_utr;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81265561	81265814	81265561	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81265897	81266005	81265897	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81266129	81266329	81266129	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81266770	81266984	81266770	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81267768	81267840	81267768	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81268568	81268624	81268568	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81268749	81268828	81268749	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81268915	81268977	81268915	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81269117	81269204	81269117	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81269419	81269485	81269419	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81269668	81269756	81269668	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81269908	81269981	81269908	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81270769	81270833	81270769	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81271023	81271195	81271023	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81273035	81273094	81273035	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81275582	81275649	81275582	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81275773	81275833	81275773	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81277114	81277151	81277114	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81277273	81277341	81277273	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81277451	81277760	81277451	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	CDS	81278019	81278048	81278019	ID=Msa1129250-mRNA-1:cds;Parent=Msa1129250-mRNA-1
chr7_3	three_prime_UTR	81278049	81278459	81278049	ID=Msa1129250-mRNA-1:three_prime_utr;Parent=Msa1129250-mRNA-1

Gene Sequence

>Msa1129250

ATGGTGCTAATACCAACGTTTTTTTTTTGGTTTAATTTCACAAACCCAAAAAGGAGTTACGACACAATTTTGCAAATAAAACCGGCGCGTTTTCGAGGAAAATCGTCGAATACCTTATATGCAACTGCAGTAGCACGTAGCAGTTACCACTCACTCCCTCACTCGGTCACCATGAATTCTATGGAAGAACACGATGTTGGAATCACCTGCTACATTTCCAACCTTCCTGGCTTCCGTGGAGTTTTAAAGCAAAGGTATTCTGATTTTATTGTACATGAAGTAGATTTAGATGGAAAAGTTGTTGAGTTGTCCTCACTTGAAGCCCTTGCTGAGGAATCTAAGCTTGCAGCAGTGGAATCGAAGAGTGTCCAGGAAAATAAAACAGATACTCCATCCGAAACTGAAGTTATAAGTTATGTTTCTCAAATTGAATCCTTTAAGTCTCTTGCGGGGGATTCTGATGCGTCTAGTTTGGAAGAATTTATTAATCAAATTAGTGCTGGCGGTGAAGATGATATCTCTCCGATTACTCTTTCTCCGGATTCTGATAAATCCCATCGGACGGCAGTGCATGTTTTCTTTAGGGAAAACTTCAAGTTCCTGGTCACTGACACAGTCGATGGACCTGATGCTTCCACAAAATGCATCCGTGTGAGATTGAATTCTGGTGGATCCAACAACAACGGCAAAAACTCTAGGAAACGCAAAGAAAGAGATACCAAGCCTTTTGACAGTAGAGGTTCTGAAAATTGGCCAGAAAATGCTGGCAAGTTCCTTAGGTTTCACCTTTATAAGGAGAACAAAGATACCCAGGAAGCTTTGGGGGTGCTTGGACATATGCTTGGCGTCAAGTCGAGATCATTTGGATTTGCGGGTACAAAGGATAAGCGTGCTGTCACGACCCAACAGGTTACTGTTTATAAGAAGCAAGCAAGCAAACTAGCTTCCCTTAATGAGAAGTTGTTTGGTATTAAAGTGGGTGATTTCTGTTATGTTAATGAAGGACTCTGTCTTGGTCAGCTATTCGGAAACAGATTTACAATCACATTACGAGGTGTTGTTGCAGATTCTGTGGATACCATAAAAGCTGCTGCAGATTCCTTAGGACGGCATGGCTTCATTAACTACTTTGGTTTACAACGTTTTGGAAGTGGTTCTGTGCCCACTCATCGCATTGGAGCCGCATTACTCCGGGGGGAATGGAAATCCAAGGCACGCAAGTACTATAAAGATACCAATGATGTTGCTGGGACACTTGAGCAGTTGCCCCAATTCTTAGTTGCTGAAACGGCCGTGCTGAAAAGTTTAAAACAAAATCCTGGAAACTACTTGCAGGCTTTGAAATCTATTCCACGAACTTTAAGGATGATGTATGTGCATAGTTATCAAAGCTATTTGTGGAACAACGCAGCAAGTACAAGGGTTAAAAAATATGGAACTGAACAAGTAGTATTAGGAGACTTGGTATACTGTAAAGAAAATCCTTCCGAAAAAGTTACAGGGATTGTTGGACCTGAATGTCATGATGACTGCGGCGATAGTTATGATACTAATAACGAAGATGAAGTCTCTGGAGATATTCATGACAAAAGAAATAGCTATGTAAAGGGCCGTCCCTGGGGAGGTGCAAACAGCTCTATTGAGCTGGGCCTCCCCAATTTTGGGGAGGCTGTGACCACTGAAGATCTAAATTCAAAATGTTATGCAATTGATGATGTCATCCTTCCTATGCCAGGTTCACGGTCAATTTATCCAACCAATGATATTGTCAAAGTGTATAATGATTTGACAAGTAAAGATGGAATCAGTTTAACTGATAGCGTGCATAATGCAAAGGAATTCTCGATCACTAGTGTTACTGGAAGTTACAGGAGGGTTTTTCAGAAACCAATTGACTTTGAATGGGAATTACTTACATATACTGATAGTTATAAGCCATTGGTAGAGACAGATTTAGATAAAATTGGAAAGTCTAAACCTATAATTGTCAACACAGTGCGTGCACTAAATGAGCAAAAGGAGAAAGTCTTTGATTGCATTAGCCAATTAGAGAGCTCTGATGATGCTCCAAAGGAAGTAATATTACCACATGATGAATCTGTCCATGACTCCAGCTCTCAAGACTCCCATACTGCTCTCAAGTTGACCTTTACTCTTCCTTCTTCATCTTATGCGACAATGGCGATAAGAGAGCTTCTGAAGACTTCAACATCTGTTGCATATCAGAAGACATTAAACCAGTAA

Protein sequence

>Msa1129250

MVLIPTFFFWFNFTNPKRSYDTILQIKPARFRGKSSNTLYATAVARSSYHSLPHSVTMNSMEEHDVGITCYISNLPGFRGVLKQRYSDFIVHEVDLDGKVVELSSLEALAEESKLAAVESKSVQENKTDTPSETEVISYVSQIESFKSLAGDSDASSLEEFINQISAGGEDDISPITLSPDSDKSHRTAVHVFFRENFKFLVTDTVDGPDASTKCIRVRLNSGGSNNNGKNSRKRKERDTKPFDSRGSENWPENAGKFLRFHLYKENKDTQEALGVLGHMLGVKSRSFGFAGTKDKRAVTTQQVTVYKKQASKLASLNEKLFGIKVGDFCYVNEGLCLGQLFGNRFTITLRGVVADSVDTIKAAADSLGRHGFINYFGLQRFGSGSVPTHRIGAALLRGEWKSKARKYYKDTNDVAGTLEQLPQFLVAETAVLKSLKQNPGNYLQALKSIPRTLRMMYVHSYQSYLWNNAASTRVKKYGTEQVVLGDLVYCKENPSEKVTGIVGPECHDDCGDSYDTNNEDEVSGDIHDKRNSYVKGRPWGGANSSIELGLPNFGEAVTTEDLNSKCYAIDDVILPMPGSRSIYPTNDIVKVYNDLTSKDGISLTDSVHNAKEFSITSVTGSYRRVFQKPIDFEWELLTYTDSYKPLVETDLDKIGKSKPIIVNTVRALNEQKEKVFDCISQLESSDDAPKEVILPHDESVHDSSSQDSHTALKLTFTLPSSSYATMAIRELLKTSTSVAYQKTLNQ*