AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1440270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440270 MtrunA17_Chr1g0192121 97.638 889 16 2 1 888 1 885 0.0 1800
Msa1440270 MtrunA17_Chr7g0272591 83.315 893 140 6 2 888 6 895 0.0 1539
Msa1440270 MtrunA17_Chr3g0131401 60.333 900 316 12 26 888 28 923 0.0 1125
Msa1440270 MtrunA17_Chr8g0385411 61.717 862 305 8 49 888 40 898 0.0 1114
Msa1440270 MtrunA17_Chr8g0387591 60.757 846 285 10 60 888 129 944 0.0 1031
Msa1440270 MtrunA17_Chr3g0131381 54.825 912 356 14 29 888 10 917 0.0 975
Msa1440270 MtrunA17_Chr3g0131361 53.215 902 376 16 21 888 21 910 0.0 942
Msa1440270 MtrunA17_Chr2g0301511 52.472 890 357 13 55 888 52 931 0.0 902
Msa1440270 MtrunA17_Chr7g0238371 53.778 794 336 11 116 888 68 851 0.0 872
Msa1440270 MtrunA17_Chr4g0061441 48.289 789 356 13 115 888 79 830 0.0 749
Msa1440270 MtrunA17_Chr2g0291481 28.099 242 146 7 514 752 293 509 7.70e-22 101
Msa1440270 MtrunA17_Chr4g0058571 25.610 246 140 6 479 721 257 462 2.04e-18 90.5
Msa1440270 MtrunA17_Chr1g0202731 25.764 229 133 6 503 729 263 456 2.13e-18 90.5
Msa1440270 MtrunA17_Chr1g0202741 24.891 229 135 6 503 729 258 451 1.16e-16 84.7
Msa1440270 MtrunA17_Chr8g0348531 25.225 222 110 6 514 722 281 459 2.12e-15 80.9
Msa1440270 MtrunA17_Chr8g0349071 25.943 212 121 6 514 722 37 215 8.58e-14 73.2
Msa1440270 MtrunA17_Chr8g0348521 26.415 212 120 6 514 722 268 446 1.79e-13 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440270 AT1G09090.2 68.042 848 238 9 47 888 23 843 0.0 1197
Msa1440270 AT5G47910.1 63.757 905 284 16 17 888 28 921 0.0 1166
Msa1440270 AT5G51060.1 62.374 893 307 11 22 888 16 905 0.0 1148
Msa1440270 AT5G07390.1 59.268 874 317 12 47 888 36 902 0.0 1041
Msa1440270 AT4G25090.1 60.870 782 285 8 116 888 80 849 0.0 1019
Msa1440270 AT4G25090.2 60.385 780 280 9 116 888 80 837 0.0 1001
Msa1440270 AT1G64060.1 55.568 916 324 13 49 888 36 944 0.0 994
Msa1440270 AT5G07390.2 55.529 850 289 15 47 855 36 837 0.0 914
Msa1440270 AT1G19230.2 49.725 909 366 12 55 888 60 952 0.0 870
Msa1440270 AT1G09090.1 67.590 614 174 7 47 654 23 617 0.0 862
Msa1440270 AT4G11230.1 56.195 799 306 13 118 888 159 941 0.0 861
Msa1440270 AT1G19230.1 49.613 905 347 12 55 888 60 926 0.0 858
Msa1440270 AT5G60010.1 50.814 799 359 12 116 888 96 886 0.0 824
Msa1440270 AT3G45810.1 48.837 817 364 13 116 888 106 912 0.0 782
Msa1440270 AT5G49740.1 28.692 237 145 6 514 747 291 506 1.37e-23 107
Msa1440270 AT5G49740.2 28.692 237 145 6 514 747 291 506 1.62e-23 106
Msa1440270 AT5G49740.3 28.692 237 145 6 514 747 291 506 2.13e-23 106
Msa1440270 AT5G49730.1 28.270 237 146 6 514 747 282 497 6.24e-23 105
Msa1440270 AT5G49730.2 28.270 237 146 6 514 747 282 497 6.81e-23 104
Msa1440270 AT5G50160.2 27.236 246 135 6 479 721 61 265 5.92e-22 101
Msa1440270 AT5G50160.1 27.236 246 135 6 479 721 240 444 3.01e-21 100
Msa1440270 AT5G23990.1 27.344 256 135 8 480 732 196 403 1.94e-19 94.0
Msa1440270 AT5G23990.3 26.562 256 137 7 480 732 106 313 3.27e-19 92.8
Msa1440270 AT1G01580.2 21.516 409 225 13 342 728 214 548 5.90e-19 92.8
Msa1440270 AT5G23980.1 25.483 259 143 6 479 734 236 447 8.37e-19 92.0
Msa1440270 AT5G23990.2 26.562 256 137 7 480 732 238 445 8.97e-19 92.0
Msa1440270 AT1G01580.1 21.516 409 225 13 342 728 136 470 1.08e-18 91.7
Msa1440270 AT1G23020.2 27.358 212 118 6 514 722 300 478 7.33e-18 89.0
Msa1440270 AT1G23020.1 27.358 212 118 6 514 722 299 477 8.26e-18 89.0
Msa1440270 AT1G23020.5 27.358 212 118 6 514 722 299 477 8.26e-18 89.0
Msa1440270 AT1G23020.6 27.358 212 118 6 514 722 277 455 1.02e-17 88.6
Msa1440270 AT1G23020.4 27.358 212 118 6 514 722 276 454 1.09e-17 88.6
Msa1440270 AT1G23020.3 27.358 212 118 6 514 722 276 454 1.09e-17 88.6
Msa1440270 AT1G23020.7 27.358 212 118 6 514 722 273 451 1.22e-17 88.2
Msa1440270 AT1G01590.1 27.039 233 110 8 505 722 270 457 4.83e-17 86.7

Find 229 sgRNAs with CRISPR-Local

Find 452 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAAGAGTTGCGAGAATTT+TGG 0.178663 tig0029054:+22248 Msa1440270:CDS
CAAAGCTTTGATCTGTAATT+TGG 0.206644 tig0029054:-22273 None:intergenic
AGGACAATTGGAAACGTATT+TGG 0.219648 tig0029054:+24851 Msa1440270:CDS
AACAAGACTTGATGAGAAAT+TGG 0.224217 tig0029054:-20565 None:intergenic
TACTTCGTATATAATATAAT+TGG 0.229273 tig0029054:+20626 Msa1440270:five_prime_UTR
AATTATTGGTGGTTCGTTAA+AGG 0.240496 tig0029054:+25913 Msa1440270:CDS
ACTATTTAGGTGATAGCTTT+TGG 0.241901 tig0029054:+25766 Msa1440270:intron
CCAAGCGAGCCTATTTCTAT+TGG 0.264084 tig0029054:+27335 Msa1440270:CDS
GTGAGTTTCTTGAGGGGTTT+TGG 0.265957 tig0029054:-26030 None:intergenic
CGGTTTCCGTTCAGAATATT+CGG 0.267262 tig0029054:+20999 Msa1440270:CDS
TCTCTAAAAGCCCGTTTAAT+AGG 0.271417 tig0029054:-24811 None:intergenic
GGTTCGTTTGAATGGTTTAA+AGG 0.272767 tig0029054:+27373 Msa1440270:CDS
GAAAAGTAAAACAAATAATT+AGG 0.277845 tig0029054:+20776 Msa1440270:five_prime_UTR
CGAACTAAGAAGGCTTTCTT+TGG 0.282783 tig0029054:+27769 Msa1440270:CDS
TTATAAACATTACGCCAATT+TGG 0.292843 tig0029054:-27580 None:intergenic
CTTGTTGTAAACATTTATTT+TGG 0.298293 tig0029054:+20582 Msa1440270:five_prime_UTR
TCAATATATCCAAGGTTGTT+TGG 0.300863 tig0029054:-24494 None:intergenic
TGTGGTCATGGTTGTGCTTA+TGG 0.307236 tig0029054:+25954 Msa1440270:CDS
CTAACTTCTGGCTTAACATT+TGG 0.313513 tig0029054:-24768 None:intergenic
TCGCAACTCTTCCTTTGTTA+TGG 0.316921 tig0029054:-22239 None:intergenic
CAGATCAAAGCTTTGATTCA+AGG 0.323044 tig0029054:+22281 Msa1440270:CDS
CCACTTTGGTCATCATTTGC+TGG 0.324385 tig0029054:-26894 None:intergenic
GAGAGTAGATAGGATTGTTA+TGG 0.325622 tig0029054:-20543 None:intergenic
AACCTTGGTTTCGTCGTAAT+AGG 0.334498 tig0029054:+25998 Msa1440270:CDS
CTAAGAATTGATGGACCTTA+TGG 0.339430 tig0029054:+27127 Msa1440270:CDS
ATGAAAGACCTGATAATTAT+TGG 0.340393 tig0029054:+25899 Msa1440270:CDS
CTTTAGTAGGGACTAACTTC+TGG 0.342443 tig0029054:-24780 None:intergenic
ACATTCGAACTTTGGGTGAT+TGG 0.346284 tig0029054:+26706 Msa1440270:CDS
GTATTTGGATCATAGCTCTA+TGG 0.352268 tig0029054:+24866 Msa1440270:CDS
GCGAGTAACCCAATAGAAAT+AGG 0.356360 tig0029054:-27344 None:intergenic
GGTTTCCGTTCAGAATATTC+GGG 0.356724 tig0029054:+21000 Msa1440270:CDS
CTTATTGGCCGAAGCACTTA+AGG 0.358195 tig0029054:-24411 None:intergenic
ACGAACCACCAATAATTATC+AGG 0.358413 tig0029054:-25907 None:intergenic
GAACATATACAATGACAAAA+AGG 0.358628 tig0029054:-26083 None:intergenic
CAAGCGAGCCTATTTCTATT+GGG 0.361277 tig0029054:+27336 Msa1440270:CDS
AGACACCGAAACGGCGCTTC+TGG 0.363185 tig0029054:+21027 Msa1440270:CDS
CAATATATCCAAGGTTGTTT+GGG 0.365860 tig0029054:-24493 None:intergenic
ATAGGATTGTGCTCTTTAGT+AGG 0.366120 tig0029054:-24793 None:intergenic
TCCTTTACCTTAGCAAGAAA+TGG 0.371765 tig0029054:+26127 Msa1440270:CDS
AAGCGTTCACATTCGAACTT+TGG 0.372800 tig0029054:+26698 Msa1440270:CDS
TGCAATGCCAGTACATTTCC+CGG 0.373710 tig0029054:-26465 None:intergenic
GAAGCGTCCGTCGTCGCTTT+CGG 0.373980 tig0029054:+21063 Msa1440270:CDS
TCGCATCCGTATAGTATCAT+TGG 0.375602 tig0029054:-26292 None:intergenic
CTTCGGCTTTCTGTGCTCTC+TGG 0.375928 tig0029054:-20839 None:intergenic
ATAATAATATAGATGTATTA+CGG 0.381189 tig0029054:-27872 None:intergenic
GCTTCAGCGGGCCGCTAAGC+GGG 0.384442 tig0029054:+20873 Msa1440270:CDS
AAGAGCACAATCCTATTAAA+CGG 0.386167 tig0029054:+24800 Msa1440270:CDS
GTTCGTTTGAATGGTTTAAA+GGG 0.386292 tig0029054:+27374 Msa1440270:CDS
CTCTTTATGAAAATCAAACT+TGG 0.388509 tig0029054:-27813 None:intergenic
CACCATACAATTTCTATCAT+AGG 0.391605 tig0029054:+20669 Msa1440270:five_prime_UTR
CTTAGAAGAAGGAGGGGAGG+TGG 0.393904 tig0029054:+27273 Msa1440270:CDS
ATATAGCTAGCTCCATTTGA+TGG 0.394907 tig0029054:+27938 Msa1440270:three_prime_UTR
TACAGAAGAAGAAGTAAAAG+AGG 0.396567 tig0029054:+24209 Msa1440270:CDS
AATGCTGTATAATAGAAATT+AGG 0.401049 tig0029054:+28017 Msa1440270:three_prime_UTR
ACTAGTAAGAGAGTAGTAAT+TGG 0.404495 tig0029054:+20741 Msa1440270:five_prime_UTR
TGAGAAATTGGAGAGTAGAT+AGG 0.404958 tig0029054:-20553 None:intergenic
AGCGTTCACATTCGAACTTT+GGG 0.412327 tig0029054:+26699 Msa1440270:CDS
AGAGTAGATAGGATTGTTAT+GGG 0.415771 tig0029054:-20542 None:intergenic
GATTATTGCCTTAAGTGCTT+CGG 0.419075 tig0029054:+24403 Msa1440270:intron
GCTTGCCAGAAGCGCCGTTT+CGG 0.419540 tig0029054:-21032 None:intergenic
CTACTTCGTGCATTTAGATC+TGG 0.420635 tig0029054:+26319 Msa1440270:CDS
TCTGTGGCGTGTAATAATCT+TGG 0.420991 tig0029054:-25841 None:intergenic
GCGAGCAGGGTTCGTTTGAA+TGG 0.421609 tig0029054:+27365 Msa1440270:CDS
CACTGGCTAAATCGAGTCTT+GGG 0.426185 tig0029054:-21277 None:intergenic
CTATTGGGTTACTCGCGAGC+AGG 0.429028 tig0029054:+27351 Msa1440270:CDS
CTCACATAACTACAGATAGT+AGG 0.430099 tig0029054:+24737 Msa1440270:CDS
AAACGGCACGACGTTTGTAC+TGG 0.430573 tig0029054:-24927 None:intergenic
CTATTGTGTCACCACGGCTA+AGG 0.433727 tig0029054:+24963 Msa1440270:CDS
AACGAGTCAAAGGAGTTTGC+TGG 0.435309 tig0029054:+22169 Msa1440270:CDS
CTTAGTTCGCCAACCAATCC+AGG 0.435611 tig0029054:-27755 None:intergenic
TAATAATATAGATGTATTAC+GGG 0.435694 tig0029054:-27871 None:intergenic
AGGAGCTGATGTAATAGAAA+AGG 0.435812 tig0029054:-26661 None:intergenic
TCTTGTGCTGGTGCTCCATA+AGG 0.436359 tig0029054:-27142 None:intergenic
ATGCCAAGGCTAAGAATTGA+TGG 0.442152 tig0029054:+27118 Msa1440270:CDS
TGAGGTAGCGGAGAATGATA+AGG 0.445771 tig0029054:+27405 Msa1440270:CDS
TTAGGCACATACCATTCAAA+TGG 0.446242 tig0029054:-26558 None:intergenic
GGTCCAGCTCCTCCATGATA+AGG 0.448687 tig0029054:-24472 None:intergenic
GCACACAGATTCTACGTACT+TGG 0.449033 tig0029054:+20716 Msa1440270:five_prime_UTR
AGCTCACGGGTGGGCTTCAG+CGG 0.449072 tig0029054:+20860 Msa1440270:CDS
GATGCTAAAGGCCCGCTTAG+CGG 0.450959 tig0029054:-20884 None:intergenic
TAGGCACATACCATTCAAAT+GGG 0.451319 tig0029054:-26557 None:intergenic
TTTGGAATTGCAATTGGGGT+TGG 0.452710 tig0029054:+25784 Msa1440270:CDS
CTGTGGCGTGTAATAATCTT+GGG 0.458512 tig0029054:-25840 None:intergenic
ACCATTTCTTGCTAAGGTAA+AGG 0.460848 tig0029054:-26128 None:intergenic
TCTTATACCATTTCTTGCTA+AGG 0.464360 tig0029054:-26134 None:intergenic
CAGATATCTCCCCATTTGAA+TGG 0.464534 tig0029054:+26547 Msa1440270:CDS
CTTCAAGGATGACGGTGAAA+TGG 0.466601 tig0029054:+20946 Msa1440270:CDS
GCGGTTCCAATGATACTATA+CGG 0.467047 tig0029054:+26286 Msa1440270:CDS
TAGGCTCGCTTGGTTGCAAA+AGG 0.468284 tig0029054:-27325 None:intergenic
AAGGTTGATAGATCAAAATC+TGG 0.469714 tig0029054:+21145 Msa1440270:CDS
TAAACTAAGACAGGTGTCTC+AGG 0.471090 tig0029054:+21087 Msa1440270:CDS
GGGTTGGACCGGTGTGGTCA+TGG 0.471179 tig0029054:+25942 Msa1440270:CDS
GGCTTCAGCGGGCCGCTAAG+CGG 0.473400 tig0029054:+20872 Msa1440270:CDS
TGAAGCCCACCCGTGAGCTT+CGG 0.474667 tig0029054:-20856 None:intergenic
TAGGATTGTGCTCTTTAGTA+GGG 0.477941 tig0029054:-24792 None:intergenic
CCAATAGAAATAGGCTCGCT+TGG 0.478144 tig0029054:-27335 None:intergenic
CTTGGTAGGCTTGATTTGCC+TGG 0.478179 tig0029054:-26939 None:intergenic
TGCCCTTATCATGGAGGAGC+TGG 0.478324 tig0029054:+24469 Msa1440270:CDS
GGTCCATCAATTCTTAGCCT+TGG 0.479139 tig0029054:-27121 None:intergenic
AAACAACCTTGGATATATTG+AGG 0.479313 tig0029054:+24496 Msa1440270:CDS
TACGAAGTTCTTCTTCTAGT+AGG 0.479588 tig0029054:+27175 Msa1440270:CDS
GATTGGTTGGCGAACTAAGA+AGG 0.482446 tig0029054:+27759 Msa1440270:CDS
CTAAGAGCTGATATGCTACC+AGG 0.483278 tig0029054:+26921 Msa1440270:CDS
AGAGCACAATCCTATTAAAC+GGG 0.483797 tig0029054:+24801 Msa1440270:CDS
GAACAAAAGTGGAAGCTTCA+AGG 0.484269 tig0029054:+20931 Msa1440270:CDS
TGCCTATGATAGAAATTGTA+TGG 0.487564 tig0029054:-20671 None:intergenic
AATCCAGGTTGCAGTGTACC+CGG 0.489896 tig0029054:+26446 Msa1440270:intron
AAGTTGATATTGTCATCAAA+TGG 0.490240 tig0029054:-25090 None:intergenic
AAGAGAGTAGTAATTGGCTT+GGG 0.493053 tig0029054:+20747 Msa1440270:five_prime_UTR
GTCCAGCTCCTCCATGATAA+GGG 0.494723 tig0029054:-24471 None:intergenic
GCACTGGCTAAATCGAGTCT+TGG 0.494740 tig0029054:-21278 None:intergenic
AGGTTTAACTATACCTTGGT+AGG 0.495179 tig0029054:-26953 None:intergenic
AAAACCAGTGAGTTTCTTGA+GGG 0.498737 tig0029054:-26037 None:intergenic
GGAATATGCTGCCCTTATCA+TGG 0.499572 tig0029054:+24460 Msa1440270:CDS
TAAGAGAGTAGTAATTGGCT+TGG 0.501598 tig0029054:+20746 Msa1440270:five_prime_UTR
AACCGAAGCAAGAACAAAAG+TGG 0.503450 tig0029054:+20920 Msa1440270:CDS
TTACTGTGGAGCGCCTGGAT+TGG 0.503829 tig0029054:+27742 Msa1440270:CDS
TTACAACTCCATCCATCAAA+TGG 0.506903 tig0029054:-27950 None:intergenic
GTGATGGTGTTTCTACATAC+AGG 0.507741 tig0029054:-25030 None:intergenic
CAAGAAATGGTATAAGAAAA+CGG 0.507908 tig0029054:+26140 Msa1440270:CDS
TGGAACCACCATTCCAAGCC+TGG 0.508118 tig0029054:-25070 None:intergenic
CTTAGGAGTAGGACCAGGCT+TGG 0.508877 tig0029054:+25057 Msa1440270:CDS
GTTCTTCTTCTAGTAGGACT+AGG 0.509693 tig0029054:+27181 Msa1440270:CDS
AGAAGACTTAGAAGAAGGAG+GGG 0.511195 tig0029054:+27267 Msa1440270:CDS
AGTGTACCCGGGAAATGTAC+TGG 0.514825 tig0029054:+26458 Msa1440270:CDS
GTTGGACGTCCGTGATGACT+CGG 0.515876 tig0029054:+20979 Msa1440270:CDS
TATTGTGTCACCACGGCTAA+GGG 0.516732 tig0029054:+24964 Msa1440270:CDS
CACAGAAAGCCGAAGCTCAC+GGG 0.516919 tig0029054:+20847 Msa1440270:CDS
GGTGCTGCTCGTGCTCTACA+AGG 0.517296 tig0029054:+21166 Msa1440270:CDS
TATACCTCGACGACGTGCTA+AGG 0.520297 tig0029054:-22206 None:intergenic
CAAGAAGAAGACTTAGAAGA+AGG 0.523128 tig0029054:+27262 Msa1440270:CDS
GAAACACCATCACTTGGCTT+AGG 0.524639 tig0029054:+25040 Msa1440270:CDS
AGACTTAGAAGAAGGAGGGG+AGG 0.525285 tig0029054:+27270 Msa1440270:CDS
GACCACACCGGTCCAACCCT+CGG 0.525744 tig0029054:-25938 None:intergenic
GGAGCTGATGTAATAGAAAA+GGG 0.527463 tig0029054:-26660 None:intergenic
AAATAAAATGTAGGATGCCA+AGG 0.528211 tig0029054:+27104 Msa1440270:intron
GCTCACGGGTGGGCTTCAGC+GGG 0.534753 tig0029054:+20861 Msa1440270:CDS
GTAAAACAAATAATTAGGAA+TGG 0.535067 tig0029054:+20781 Msa1440270:exon
TGCACAAGTGTGTATGAAGA+AGG 0.535781 tig0029054:+27454 Msa1440270:CDS
GCACAGAAAGCCGAAGCTCA+CGG 0.538948 tig0029054:+20846 Msa1440270:CDS
AGGGGTGATGAATGAGGTAG+CGG 0.541100 tig0029054:+27393 Msa1440270:CDS
TGATTGGACGTCACAACTGA+AGG 0.541866 tig0029054:+26722 Msa1440270:CDS
GTTATGTGAGCTGATTGTGC+TGG 0.544038 tig0029054:-24724 None:intergenic
AGCTAGCTCCATTTGATGGA+TGG 0.545007 tig0029054:+27942 Msa1440270:three_prime_UTR
CATGTTAAACTTGAGCGTCT+CGG 0.548837 tig0029054:-24992 None:intergenic
TTATGTGTAGCTGTACAACT+TGG 0.549622 tig0029054:+24681 Msa1440270:intron
TCGTTAAAGGAACCGAGGGT+TGG 0.549825 tig0029054:+25926 Msa1440270:CDS
TATTGGGTTACTCGCGAGCA+GGG 0.550595 tig0029054:+27352 Msa1440270:CDS
ATAGCCCATGACATGGAAAA+CGG 0.551117 tig0029054:-24944 None:intergenic
ACATACAGGCAACAAGATCA+AGG 0.554086 tig0029054:-25016 None:intergenic
TACAAACCTCAATATATCCA+AGG 0.555649 tig0029054:-24502 None:intergenic
TTCGTTTGAATGGTTTAAAG+GGG 0.557889 tig0029054:+27375 Msa1440270:CDS
TCACATAACTACAGATAGTA+GGG 0.557927 tig0029054:+24738 Msa1440270:CDS
TGTGGAGCGCCTGGATTGGT+TGG 0.557961 tig0029054:+27746 Msa1440270:CDS
AAAGGAACCGAGGGTTGGAC+CGG 0.558348 tig0029054:+25931 Msa1440270:CDS
TAAAACCAGTGAGTTTCTTG+AGG 0.558629 tig0029054:-26038 None:intergenic
CAGCTCTTAGAAGACCACTT+TGG 0.560760 tig0029054:-26908 None:intergenic
CCATCACTTGGCTTAGGAGT+AGG 0.564213 tig0029054:+25046 Msa1440270:CDS
TAGGACCAGGCTTGGAATGG+TGG 0.564316 tig0029054:+25065 Msa1440270:CDS
AGGGTGGACAAGAATGCTGA+TGG 0.564553 tig0029054:+24180 Msa1440270:intron
AAGAAGACTTAGAAGAAGGA+GGG 0.564813 tig0029054:+27266 Msa1440270:CDS
ATTAGGAATGAACGAGTCAA+AGG 0.565200 tig0029054:+22159 Msa1440270:intron
AAAGACCTGATAATTATTGG+TGG 0.565609 tig0029054:+25902 Msa1440270:CDS
CTTCTAGTAGGACTAGGAAT+CGG 0.567489 tig0029054:+27187 Msa1440270:CDS
GAGCTGGACCCAAACAACCT+TGG 0.567715 tig0029054:+24485 Msa1440270:CDS
TGGATGTAGTTTCAGAGACA+AGG 0.568052 tig0029054:+27536 Msa1440270:CDS
ACATGGACATACCTATGCAC+TGG 0.571320 tig0029054:-21294 None:intergenic
TATTATATACGAAGTATATG+TGG 0.571701 tig0029054:-20619 None:intergenic
AGAAAGCCGAAGCTCACGGG+TGG 0.572651 tig0029054:+20850 Msa1440270:CDS
AAACCCCTCAAGAAACTCAC+TGG 0.573744 tig0029054:+26033 Msa1440270:CDS
CAAATCTGTGAGGATACTAA+AGG 0.573820 tig0029054:+26345 Msa1440270:CDS
GCTTTCGGCTAAACTAAGAC+AGG 0.576796 tig0029054:+21078 Msa1440270:CDS
GTTTAAAGGGGTGATGAATG+AGG 0.577520 tig0029054:+27387 Msa1440270:CDS
GTAGCGGAGAATGATAAGGA+AGG 0.577707 tig0029054:+27409 Msa1440270:CDS
CTCGGCACCGCCCTTAGCCG+TGG 0.582467 tig0029054:-24974 None:intergenic
GAGTAGGACCAGGCTTGGAA+TGG 0.584321 tig0029054:+25062 Msa1440270:CDS
AAACGGCGCTTCTGGCAAGC+CGG 0.585612 tig0029054:+21035 Msa1440270:CDS
GAAGAAGACTTAGAAGAAGG+AGG 0.587618 tig0029054:+27265 Msa1440270:CDS
TTTGATGAGTTGGCTGTGGA+GGG 0.587990 tig0029054:+21247 Msa1440270:CDS
CTTGGCTTAGGAGTAGGACC+AGG 0.588624 tig0029054:+25052 Msa1440270:CDS
ACGCTTATATAGTCATCTCC+AGG 0.593990 tig0029054:-26681 None:intergenic
ACGACGGACGCTTCTCAAGC+CGG 0.596085 tig0029054:-21054 None:intergenic
GGGTTCATATTCTTCATCTG+TGG 0.596212 tig0029054:-25857 None:intergenic
GAACGGAAACCGAGTCATCA+CGG 0.600432 tig0029054:-20988 None:intergenic
TGTATGAAGAAGGCGACGCT+CGG 0.602286 tig0029054:+27464 Msa1440270:CDS
AGTTTAGCCGAAAGCGACGA+CGG 0.602465 tig0029054:-21070 None:intergenic
TCGGGGTGGAGACACCGAAA+CGG 0.606902 tig0029054:+21018 Msa1440270:CDS
AGTGGAAGCTTCAAGGATGA+CGG 0.607876 tig0029054:+20938 Msa1440270:CDS
CAAGGATGACGGTGAAATGG+TGG 0.608567 tig0029054:+20949 Msa1440270:CDS
CGAGACGCTCAAGTTTAACA+TGG 0.609198 tig0029054:+24993 Msa1440270:CDS
ATCCAGGTTGCAGTGTACCC+GGG 0.609923 tig0029054:+26447 Msa1440270:intron
TGGTTCGTTAAAGGAACCGA+GGG 0.611360 tig0029054:+25922 Msa1440270:CDS
CAAGGGTTTAAGTACACTAG+TGG 0.613267 tig0029054:+26501 Msa1440270:CDS
AGTAGTTGCTTCCATAACAA+AGG 0.614552 tig0029054:+22228 Msa1440270:CDS
AAGAGAGCAAACATGAGTCA+TGG 0.614927 tig0029054:+20810 Msa1440270:CDS
GTTTCCGTTCAGAATATTCG+GGG 0.618715 tig0029054:+21001 Msa1440270:CDS
AAAACGTTGGAAGTGAAGGT+TGG 0.620114 tig0029054:+21206 Msa1440270:CDS
TCTTTGAGTATGCTAATCAA+AGG 0.621357 tig0029054:-27217 None:intergenic
TATGTAGAAACACCATCACT+TGG 0.622762 tig0029054:+25034 Msa1440270:CDS
TGACACAATAGCCCATGACA+TGG 0.625098 tig0029054:-24951 None:intergenic
ACTCGATTTAGCCAGTGCAT+AGG 0.626507 tig0029054:+21283 Msa1440270:CDS
CTAGTGTACTTAAACCCTTG+TGG 0.628502 tig0029054:-26498 None:intergenic
GAGCAAACATGAGTCATGGT+CGG 0.629365 tig0029054:+20814 Msa1440270:CDS
GCAATGCCAGTACATTTCCC+GGG 0.633573 tig0029054:-26464 None:intergenic
GATTGGACGTCACAACTGAA+GGG 0.637531 tig0029054:+26723 Msa1440270:CDS
GAAAGCCGAAGCTCACGGGT+GGG 0.641161 tig0029054:+20851 Msa1440270:CDS
TCCGTTCAGAATATTCGGGG+TGG 0.641896 tig0029054:+21004 Msa1440270:CDS
TTGCATGTGTCTAAACCACA+AGG 0.642211 tig0029054:+26483 Msa1440270:CDS
AAAATTACAAGAACGAGCAG+AGG 0.645722 tig0029054:+24439 Msa1440270:CDS
GTGGTTCGTTAAAGGAACCG+AGG 0.646692 tig0029054:+25921 Msa1440270:CDS
GGATGTAGTTTCAGAGACAA+GGG 0.648790 tig0029054:+27537 Msa1440270:CDS
AGCCTATTACGACGAAACCA+AGG 0.648944 tig0029054:-26000 None:intergenic
ATAGACATGGATGTATCTTG+CGG 0.650881 tig0029054:+26267 Msa1440270:intron
TCCACCCCGAATATTCTGAA+CGG 0.651915 tig0029054:-21005 None:intergenic
TGTGTCACCACGGCTAAGGG+CGG 0.653750 tig0029054:+24967 Msa1440270:CDS
CCTACTCCTAAGCCAAGTGA+TGG 0.654089 tig0029054:-25046 None:intergenic
AACCGAGGGTTGGACCGGTG+TGG 0.658523 tig0029054:+25936 Msa1440270:CDS
CCAGCAAATGATGACCAAAG+TGG 0.662394 tig0029054:+26894 Msa1440270:CDS
GATGCCTTAGCACGTCGTCG+AGG 0.676702 tig0029054:+22202 Msa1440270:CDS
CAGGCAAATCAAGCCTACCA+AGG 0.679852 tig0029054:+26940 Msa1440270:CDS
AAACCAGTGAGTTTCTTGAG+GGG 0.680412 tig0029054:-26036 None:intergenic
TGAAATGGTGGAGATAACGT+TGG 0.685098 tig0029054:+20961 Msa1440270:CDS
TGACAATATCAACTTTCACA+AGG 0.691296 tig0029054:+25098 Msa1440270:CDS
TGCATGTGTCTAAACCACAA+GGG 0.711409 tig0029054:+26484 Msa1440270:CDS
AAGCACAACCATGACCACAC+CGG 0.711632 tig0029054:-25950 None:intergenic
AGGCACATACCATTCAAATG+GGG 0.712031 tig0029054:-26556 None:intergenic
CATGGGCTATTGTGTCACCA+CGG 0.732084 tig0029054:+24957 Msa1440270:CDS
ATATGCTGCCCTTATCATGG+AGG 0.734728 tig0029054:+24463 Msa1440270:CDS
GATCTGGCTACAAATCTGTG+AGG 0.758785 tig0029054:+26335 Msa1440270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTGCATATAAA+TGG + tig0029054:21358-21377 Msa1440270:intron 10.0%
!!! CTAAGTTTTTTAAAAAAAAA+AGG + tig0029054:21985-22004 Msa1440270:intron 10.0%
!! AAAGAAATAATTAATGTAAT+TGG - tig0029054:22751-22770 None:intergenic 10.0%
!! AAAAAGATGTATAATAAATA+GGG - tig0029054:22784-22803 None:intergenic 10.0%
!!! ATATAATAAACTTTGTTTAA+GGG - tig0029054:23721-23740 None:intergenic 10.0%
!! TTAAACAAAGTTTATTATAT+GGG + tig0029054:23721-23740 Msa1440270:intron 10.0%
!!! TTTAATGTTAATTTGTTTAA+TGG - tig0029054:24303-24322 None:intergenic 10.0%
!!! TAACATTAAATTTTCTAATA+TGG + tig0029054:24313-24332 Msa1440270:intron 10.0%
!! CAAATTAAAATATAATTTAC+TGG - tig0029054:24607-24626 None:intergenic 10.0%
!!! AAAAAAATCTTATTGTTTTA+GGG - tig0029054:25135-25154 None:intergenic 10.0%
!!! AAAAAAAATCTTATTGTTTT+AGG - tig0029054:25136-25155 None:intergenic 10.0%
!!! TAAAATAACATATTAGATTT+TGG + tig0029054:25663-25682 Msa1440270:intron 10.0%
!! TGTATGTTATATTATAAATT+TGG - tig0029054:27703-27722 None:intergenic 10.0%
!! ATAATAATATAGATGTATTA+CGG - tig0029054:27875-27894 None:intergenic 10.0%
!! TACTTCGTATATAATATAAT+TGG + tig0029054:20626-20645 Msa1440270:five_prime_UTR 15.0%
!! GAAAAGTAAAACAAATAATT+AGG + tig0029054:20776-20795 Msa1440270:five_prime_UTR 15.0%
!!! TAATATTAGTTTTTTTTTGG+TGG - tig0029054:22110-22129 None:intergenic 15.0%
!! AAAAGATGTATAATAAATAG+GGG - tig0029054:22783-22802 None:intergenic 15.0%
!! GAAAAAGATGTATAATAAAT+AGG - tig0029054:22785-22804 None:intergenic 15.0%
!! TATTATGAGATTTATATGAA+TGG + tig0029054:23092-23111 Msa1440270:intron 15.0%
!! TAATATAGAAATATTGTCAT+GGG - tig0029054:23287-23306 None:intergenic 15.0%
!!! TTATTTTAACAAATGTCTAA+AGG + tig0029054:23308-23327 Msa1440270:intron 15.0%
!!! AATTTTTTATTTAGTTCCAT+AGG + tig0029054:23587-23606 Msa1440270:intron 15.0%
!! TAATATTGGAATATTCTTTA+TGG + tig0029054:23664-23683 Msa1440270:intron 15.0%
!!! CATATAATAAACTTTGTTTA+AGG - tig0029054:23722-23741 None:intergenic 15.0%
!! CTTAAACAAAGTTTATTATA+TGG + tig0029054:23720-23739 Msa1440270:intron 15.0%
!! ATCAACTAATTGTAAAAAAA+TGG + tig0029054:23977-23996 Msa1440270:intron 15.0%
!!! TATAAACTTGACAATTTTTT+AGG + tig0029054:25335-25354 Msa1440270:intron 15.0%
!!! AAAGTATAAGAATAAGATTT+TGG - tig0029054:26592-26611 None:intergenic 15.0%
!! AAATAATTCATATACATCAT+CGG - tig0029054:27030-27049 None:intergenic 15.0%
!!! CTCAATTTTAAATAAAATGT+AGG + tig0029054:27095-27114 Msa1440270:intron 15.0%
!! TAATAATATAGATGTATTAC+GGG - tig0029054:27874-27893 None:intergenic 15.0%
!!! CTTGTTGTAAACATTTATTT+TGG + tig0029054:20582-20601 Msa1440270:five_prime_UTR 20.0%
!! TATTATATACGAAGTATATG+TGG - tig0029054:20622-20641 None:intergenic 20.0%
!! GTAAAACAAATAATTAGGAA+TGG + tig0029054:20781-20800 Msa1440270:exon 20.0%
!! GGTCATTAAGTTAAAAAAAA+TGG + tig0029054:21399-21418 Msa1440270:intron 20.0%
!! GCTAAAAAAAAACATATGTA+TGG + tig0029054:21435-21454 Msa1440270:intron 20.0%
!! ATATGTATGGTCTATTAATT+AGG + tig0029054:21448-21467 Msa1440270:intron 20.0%
!! TCAAGACATTTCATTTATAA+TGG + tig0029054:21517-21536 Msa1440270:intron 20.0%
!! AGACTTTAATTGAGATAAAA+TGG - tig0029054:21692-21711 None:intergenic 20.0%
!! CAAGAAAAATGTTAGTATTT+AGG + tig0029054:21823-21842 Msa1440270:intron 20.0%
!! GACAAAAAAATTTCTCAAAA+GGG - tig0029054:22701-22720 None:intergenic 20.0%
!! AGACAAAAAAATTTCTCAAA+AGG - tig0029054:22702-22721 None:intergenic 20.0%
!! AATGGAGATGATATTATTAT+TGG + tig0029054:23110-23129 Msa1440270:intron 20.0%
!! ATGGAGATGATATTATTATT+GGG + tig0029054:23111-23130 Msa1440270:intron 20.0%
!! CTAATATAGAAATATTGTCA+TGG - tig0029054:23288-23307 None:intergenic 20.0%
!! TGTATACAATATGTAACATT+AGG - tig0029054:23470-23489 None:intergenic 20.0%
!!! ACACACACTTTATTTTTAAT+CGG - tig0029054:23558-23577 None:intergenic 20.0%
!! GACATGTAATATACTAATAT+TGG + tig0029054:23650-23669 Msa1440270:intron 20.0%
!! ACTAATTGTAAAAAAATGGT+TGG + tig0029054:23981-24000 Msa1440270:intron 20.0%
!!! TAATTTGTTTAATGGTCAAT+TGG - tig0029054:24295-24314 None:intergenic 20.0%
!!! TTGTAATTTTGATAGCTTAT+TGG - tig0029054:24429-24448 None:intergenic 20.0%
!! AAGAATTTACAATCGAATTT+AGG - tig0029054:25282-25301 None:intergenic 20.0%
!!! AGAGCTTATTTTACTTTATT+AGG + tig0029054:25405-25424 Msa1440270:intron 20.0%
!!! TTTTTTTCCTCTTACTATTT+AGG + tig0029054:25753-25772 Msa1440270:intron 20.0%
!!! TATGTTCTTTTTATCATTCA+TGG + tig0029054:26099-26118 Msa1440270:CDS 20.0%
!! AGATGAAAAAACAACTAAAA+TGG - tig0029054:26201-26220 None:intergenic 20.0%
!! TTTACAAAATTGAAGATGAA+GGG - tig0029054:26397-26416 None:intergenic 20.0%
!! ATTTACAAAATTGAAGATGA+AGG - tig0029054:26398-26417 None:intergenic 20.0%
!! TATTCATTGAAAAAAAATCC+AGG + tig0029054:26431-26450 Msa1440270:intron 20.0%
!!! AAGATTTTGGAACTTAAATT+AGG - tig0029054:26579-26598 None:intergenic 20.0%
!!! AGAGCTATGTTATTTTAATT+TGG + tig0029054:26786-26805 Msa1440270:intron 20.0%
!!! TATTTTTCTATGAAATCGAT+AGG + tig0029054:27045-27064 Msa1440270:intron 20.0%
!!! GATTTTACTCTTAATTAGTT+TGG + tig0029054:27647-27666 Msa1440270:intron 20.0%
!! AATGCTGTATAATAGAAATT+AGG + tig0029054:28017-28036 Msa1440270:three_prime_UTR 20.0%
! AAGTTTATGACAAAAAACGT+TGG + tig0029054:21193-21212 Msa1440270:CDS 25.0%
!! TGGAAGTTCATTTGAAATAA+TGG + tig0029054:21378-21397 Msa1440270:intron 25.0%
!! TCAAAAGGGTCTTATAATTA+GGG - tig0029054:22687-22706 None:intergenic 25.0%
! ATGTAATTGGAAATAGCAAA+GGG - tig0029054:22738-22757 None:intergenic 25.0%
! AATGTAATTGGAAATAGCAA+AGG - tig0029054:22739-22758 None:intergenic 25.0%
!!! ATTTTATCCTTTAAGAGAGA+GGG - tig0029054:22847-22866 None:intergenic 25.0%
!!! AATTTTATCCTTTAAGAGAG+AGG - tig0029054:22848-22867 None:intergenic 25.0%
!!! ATTCCCGTTATTTTTTCAAA+AGG + tig0029054:22920-22939 Msa1440270:intron 25.0%
!!! TTCCCGTTATTTTTTCAAAA+GGG + tig0029054:22921-22940 Msa1440270:intron 25.0%
! TGAACATGTTAATTGTTACA+AGG + tig0029054:22995-23014 Msa1440270:intron 25.0%
!!! AATGTGCATTTAATTTGCAA+TGG - tig0029054:23027-23046 None:intergenic 25.0%
!!! TAACATTGAATAAGTGTTGA+TGG + tig0029054:23492-23511 Msa1440270:intron 25.0%
! ATAATTCTTTCGTTCTCTAT+AGG - tig0029054:23522-23541 None:intergenic 25.0%
! ATTGGAATATTCTTTATGGT+TGG + tig0029054:23668-23687 Msa1440270:intron 25.0%
! ATCTCATCATATCTCATTAA+TGG - tig0029054:23819-23838 None:intergenic 25.0%
!! TTGTAAAAAAATGGTTGGTT+AGG + tig0029054:23986-24005 Msa1440270:intron 25.0%
!!! AGTACAGTATTTTTGACATT+AGG - tig0029054:24112-24131 None:intergenic 25.0%
!!! TAGAGAACTAGCTTATTTTA+TGG + tig0029054:24828-24847 Msa1440270:CDS 25.0%
!!! AAGTTGATATTGTCATCAAA+TGG - tig0029054:25093-25112 None:intergenic 25.0%
!! ATTTTACTTTATTAGGTCAC+TGG + tig0029054:25412-25431 Msa1440270:intron 25.0%
! ATGAAAGACCTGATAATTAT+TGG + tig0029054:25899-25918 Msa1440270:CDS 25.0%
! GAACATATACAATGACAAAA+AGG - tig0029054:26086-26105 None:intergenic 25.0%
! CAAGAAATGGTATAAGAAAA+CGG + tig0029054:26140-26159 Msa1440270:CDS 25.0%
! AAATGGAACAAAAAACACAT+TGG - tig0029054:26184-26203 None:intergenic 25.0%
! TTTGATATTGTTCATGATCA+TGG + tig0029054:26829-26848 Msa1440270:intron 25.0%
! ATTAATTACATTCATCGTCA+TGG + tig0029054:26853-26872 Msa1440270:intron 25.0%
! AAAAAGGTTTAACTATACCT+TGG - tig0029054:26960-26979 None:intergenic 25.0%
! ACACATTGAATCAATCATAA+TGG - tig0029054:26993-27012 None:intergenic 25.0%
! TTATAAACATTACGCCAATT+TGG - tig0029054:27583-27602 None:intergenic 25.0%
!!! ACTTACCAACTTTTTTTTCA+GGG - tig0029054:27624-27643 None:intergenic 25.0%
!!! TACTTACCAACTTTTTTTTC+AGG - tig0029054:27625-27644 None:intergenic 25.0%
!!! GAAAAAAAAGTTGGTAAGTA+TGG + tig0029054:27625-27644 Msa1440270:intron 25.0%
! ATAACATACATTGTGTTCTT+AGG + tig0029054:27713-27732 Msa1440270:intron 25.0%
! CTCTTTATGAAAATCAAACT+TGG - tig0029054:27816-27835 None:intergenic 25.0%
!!! TGAATCATTTTTTGTTGTAG+AGG + tig0029054:27910-27929 Msa1440270:three_prime_UTR 25.0%
AGAGTAGATAGGATTGTTAT+GGG - tig0029054:20545-20564 None:intergenic 30.0%
AACAAGACTTGATGAGAAAT+TGG - tig0029054:20568-20587 None:intergenic 30.0%
CACCATACAATTTCTATCAT+AGG + tig0029054:20669-20688 Msa1440270:five_prime_UTR 30.0%
TGCCTATGATAGAAATTGTA+TGG - tig0029054:20674-20693 None:intergenic 30.0%
ACTAGTAAGAGAGTAGTAAT+TGG + tig0029054:20741-20760 Msa1440270:five_prime_UTR 30.0%
!! AAGGTTGATAGATCAAAATC+TGG + tig0029054:21145-21164 Msa1440270:CDS 30.0%
! ATCAAAACGCTTTTCAACTT+GGG - tig0029054:21233-21252 None:intergenic 30.0%
ATGAAGCATAGACTATAACA+TGG - tig0029054:21314-21333 None:intergenic 30.0%
TGAAATGTCTTGAACTCTTA+TGG - tig0029054:21510-21529 None:intergenic 30.0%
ATTTAGGCACGTAACAAATA+AGG + tig0029054:21839-21858 Msa1440270:intron 30.0%
TTTAGGCACGTAACAAATAA+GGG + tig0029054:21840-21859 Msa1440270:intron 30.0%
CGTAACAAATAAGGGTTAAA+TGG + tig0029054:21848-21867 Msa1440270:intron 30.0%
! CAAAGCTTTGATCTGTAATT+TGG - tig0029054:22276-22295 None:intergenic 30.0%
! CTCAAAAGGGTCTTATAATT+AGG - tig0029054:22688-22707 None:intergenic 30.0%
TGTAATTGGAAATAGCAAAG+GGG - tig0029054:22737-22756 None:intergenic 30.0%
! AATAACGGGAATTAAGATAG+TGG - tig0029054:22912-22931 None:intergenic 30.0%
AGCAATCAATTAACACTGTT+AGG - tig0029054:22976-22995 None:intergenic 30.0%
TAAAGCAAGCAAAAACAAGA+AGG + tig0029054:23935-23954 Msa1440270:intron 30.0%
AAAGCAAGCAAAAACAAGAA+GGG + tig0029054:23936-23955 Msa1440270:intron 30.0%
TACAGAAGAAGAAGTAAAAG+AGG + tig0029054:24209-24228 Msa1440270:CDS 30.0%
ACTACTTATTACTAAGTGAG+TGG + tig0029054:24269-24288 Msa1440270:intron 30.0%
GTTTATTTACAAGACACTTG+TGG + tig0029054:24342-24361 Msa1440270:intron 30.0%
CAATATATCCAAGGTTGTTT+GGG - tig0029054:24496-24515 None:intergenic 30.0%
TCAATATATCCAAGGTTGTT+TGG - tig0029054:24497-24516 None:intergenic 30.0%
AAACAACCTTGGATATATTG+AGG + tig0029054:24496-24515 Msa1440270:CDS 30.0%
TACAAACCTCAATATATCCA+AGG - tig0029054:24505-24524 None:intergenic 30.0%
!! TAAGTTGATCAGCTAGAAAA+TGG + tig0029054:24545-24564 Msa1440270:intron 30.0%
TCACATAACTACAGATAGTA+GGG + tig0029054:24738-24757 Msa1440270:CDS 30.0%
! AAGAGCACAATCCTATTAAA+CGG + tig0029054:24800-24819 Msa1440270:CDS 30.0%
!!! AGAACTAGCTTATTTTATGG+AGG + tig0029054:24831-24850 Msa1440270:CDS 30.0%
!!! CTTATTTTATGGAGGACAAT+TGG + tig0029054:24839-24858 Msa1440270:CDS 30.0%
TGACAATATCAACTTTCACA+AGG + tig0029054:25098-25117 Msa1440270:CDS 30.0%
AATCTAAGTCATAATGTGAG+TGG - tig0029054:25239-25258 None:intergenic 30.0%
GAAGTCAATGATTCTTTATG+AGG + tig0029054:25305-25324 Msa1440270:intron 30.0%
GTATATTGGAGAAAAGTTCA+AGG + tig0029054:25489-25508 Msa1440270:intron 30.0%
! TTAAGGAAGTGTAAACAGAT+TGG + tig0029054:25539-25558 Msa1440270:intron 30.0%
! ACTATTTAGGTGATAGCTTT+TGG + tig0029054:25766-25785 Msa1440270:intron 30.0%
!!! ATAGCTTTTGGAATTGCAAT+TGG + tig0029054:25778-25797 Msa1440270:CDS 30.0%
!!! TAGCTTTTGGAATTGCAATT+GGG + tig0029054:25779-25798 Msa1440270:CDS 30.0%
TCTCCAAAAAACTGTTTCAT+GGG - tig0029054:25880-25899 None:intergenic 30.0%
ATCTCCAAAAAACTGTTTCA+TGG - tig0029054:25881-25900 None:intergenic 30.0%
AAAGACCTGATAATTATTGG+TGG + tig0029054:25902-25921 Msa1440270:CDS 30.0%
! AATTATTGGTGGTTCGTTAA+AGG + tig0029054:25913-25932 Msa1440270:CDS 30.0%
!!! TCACTGGTTTTAATGCATTT+TGG + tig0029054:26049-26068 Msa1440270:CDS 30.0%
TCTTATACCATTTCTTGCTA+AGG - tig0029054:26137-26156 None:intergenic 30.0%
TGATGTGACATATATAGACA+TGG + tig0029054:26254-26273 Msa1440270:intron 30.0%
!! GTTAAACCTTTTTGATGATC+TGG + tig0029054:26967-26986 Msa1440270:intron 30.0%
AAATAAAATGTAGGATGCCA+AGG + tig0029054:27104-27123 Msa1440270:intron 30.0%
TCTTTGAGTATGCTAATCAA+AGG - tig0029054:27220-27239 None:intergenic 30.0%
GTTCGTTTGAATGGTTTAAA+GGG + tig0029054:27374-27393 Msa1440270:CDS 30.0%
TTCGTTTGAATGGTTTAAAG+GGG + tig0029054:27375-27394 Msa1440270:CDS 30.0%
AAACACCCTGAAAAAAAAGT+TGG + tig0029054:27616-27635 Msa1440270:CDS 30.0%
!!! TTCTTAGGTGTTTTTTACTG+TGG + tig0029054:27728-27747 Msa1440270:intron 30.0%
!! TTGGACTTTTCAAGAAAAAC+TGG + tig0029054:27788-27807 Msa1440270:CDS 30.0%
!!! CTTCACTTTTTGAGTTTGAT+TGG + tig0029054:27994-28013 Msa1440270:three_prime_UTR 30.0%
GAGAGTAGATAGGATTGTTA+TGG - tig0029054:20546-20565 None:intergenic 35.0%
TGAGAAATTGGAGAGTAGAT+AGG - tig0029054:20556-20575 None:intergenic 35.0%
TAAGAGAGTAGTAATTGGCT+TGG + tig0029054:20746-20765 Msa1440270:five_prime_UTR 35.0%
! AAGAGAGTAGTAATTGGCTT+GGG + tig0029054:20747-20766 Msa1440270:five_prime_UTR 35.0%
!! TTCCACTTTTGTTCTTGCTT+CGG - tig0029054:20925-20944 None:intergenic 35.0%
!!! GTCTTTTAAGGCGTTTGATA+AGG + tig0029054:21126-21145 Msa1440270:CDS 35.0%
ACAAAAAACGTTGGAAGTGA+AGG + tig0029054:21202-21221 Msa1440270:CDS 35.0%
! CATCAAAACGCTTTTCAACT+TGG - tig0029054:21234-21253 None:intergenic 35.0%
!!! TGAAAAGCGTTTTGATGAGT+TGG + tig0029054:21237-21256 Msa1440270:CDS 35.0%
TCTATGCACTACAACGTATA+TGG + tig0029054:21768-21787 Msa1440270:intron 35.0%
GGGTGTAAATGACAATGATT+AGG + tig0029054:22142-22161 Msa1440270:intron 35.0%
ATTAGGAATGAACGAGTCAA+AGG + tig0029054:22159-22178 Msa1440270:intron 35.0%
AGTAGTTGCTTCCATAACAA+AGG + tig0029054:22228-22247 Msa1440270:CDS 35.0%
! CAGATCAAAGCTTTGATTCA+AGG + tig0029054:22281-22300 Msa1440270:CDS 35.0%
!!! TCAAGGCTTCAAACCTTTTT+TGG + tig0029054:22298-22317 Msa1440270:CDS 35.0%
GTCTTCTTACATGCCAAAAA+AGG - tig0029054:22314-22333 None:intergenic 35.0%
CTGACAAGTGACAACTTAAA+TGG - tig0029054:22443-22462 None:intergenic 35.0%
TTGAATTATGCAACTGAGTG+CGG - tig0029054:22642-22661 None:intergenic 35.0%
! AAGGGTCTTATAATTAGGGA+CGG - tig0029054:22683-22702 None:intergenic 35.0%
TAAACAACCCTCTCTCTTAA+AGG + tig0029054:22837-22856 Msa1440270:intron 35.0%
!! GGCCCTTTTGAAAAAATAAC+GGG - tig0029054:22926-22945 None:intergenic 35.0%
!! GGGCCCTTTTGAAAAAATAA+CGG - tig0029054:22927-22946 None:intergenic 35.0%
TTCAAAAGGGCCCTATAATT+AGG + tig0029054:22934-22953 Msa1440270:intron 35.0%
TCAAAAGGGCCCTATAATTA+GGG + tig0029054:22935-22954 Msa1440270:intron 35.0%
!! CATTGAATAAGTGTTGATGG+TGG + tig0029054:23495-23514 Msa1440270:intron 35.0%
AATTCCAATATTCACCAGCA+GGG - tig0029054:23620-23639 None:intergenic 35.0%
AAATTCCAATATTCACCAGC+AGG - tig0029054:23621-23640 None:intergenic 35.0%
GATTATTGCCTTAAGTGCTT+CGG + tig0029054:24403-24422 Msa1440270:intron 35.0%
AAAATTACAAGAACGAGCAG+AGG + tig0029054:24439-24458 Msa1440270:CDS 35.0%
!!! TTACTGGCTCAATTTTGATG+AGG - tig0029054:24591-24610 None:intergenic 35.0%
TTATGTGTAGCTGTACAACT+TGG + tig0029054:24681-24700 Msa1440270:intron 35.0%
CTCACATAACTACAGATAGT+AGG + tig0029054:24737-24756 Msa1440270:CDS 35.0%
!! CTAACTTCTGGCTTAACATT+TGG - tig0029054:24771-24790 None:intergenic 35.0%
TAGGATTGTGCTCTTTAGTA+GGG - tig0029054:24795-24814 None:intergenic 35.0%
ATAGGATTGTGCTCTTTAGT+AGG - tig0029054:24796-24815 None:intergenic 35.0%
AGAGCACAATCCTATTAAAC+GGG + tig0029054:24801-24820 Msa1440270:CDS 35.0%
! TCTCTAAAAGCCCGTTTAAT+AGG - tig0029054:24814-24833 None:intergenic 35.0%
AGGACAATTGGAAACGTATT+TGG + tig0029054:24851-24870 Msa1440270:CDS 35.0%
! GTATTTGGATCATAGCTCTA+TGG + tig0029054:24866-24885 Msa1440270:CDS 35.0%
TATGTAGAAACACCATCACT+TGG + tig0029054:25034-25053 Msa1440270:CDS 35.0%
!! CTTTTTGTGGTTGGTACATA+TGG + tig0029054:25204-25223 Msa1440270:intron 35.0%
TAAGTCATAATGTGAGTGGA+AGG - tig0029054:25235-25254 None:intergenic 35.0%
GCTATCACCTAAATAGTAAG+AGG - tig0029054:25763-25782 None:intergenic 35.0%
!!! AGCTTTTGGAATTGCAATTG+GGG + tig0029054:25780-25799 Msa1440270:CDS 35.0%
!!! GAACCCATGAAACAGTTTTT+TGG + tig0029054:25874-25893 Msa1440270:CDS 35.0%
ACGAACCACCAATAATTATC+AGG - tig0029054:25910-25929 None:intergenic 35.0%
!! CTTTCATTTTAGCACAACCT+TGG + tig0029054:25983-26002 Msa1440270:CDS 35.0%
AAAACCAGTGAGTTTCTTGA+GGG - tig0029054:26040-26059 None:intergenic 35.0%
TAAAACCAGTGAGTTTCTTG+AGG - tig0029054:26041-26060 None:intergenic 35.0%
TCCTTTACCTTAGCAAGAAA+TGG + tig0029054:26127-26146 Msa1440270:CDS 35.0%
ACCATTTCTTGCTAAGGTAA+AGG - tig0029054:26131-26150 None:intergenic 35.0%
ATAGACATGGATGTATCTTG+CGG + tig0029054:26267-26286 Msa1440270:intron 35.0%
CAAATCTGTGAGGATACTAA+AGG + tig0029054:26345-26364 Msa1440270:CDS 35.0%
TAGGCACATACCATTCAAAT+GGG - tig0029054:26560-26579 None:intergenic 35.0%
TTAGGCACATACCATTCAAA+TGG - tig0029054:26561-26580 None:intergenic 35.0%
TTTACTTGCAATTTGTCTCC+AGG + tig0029054:26634-26653 Msa1440270:intron 35.0%
GGAGCTGATGTAATAGAAAA+GGG - tig0029054:26663-26682 None:intergenic 35.0%
AGGAGCTGATGTAATAGAAA+AGG - tig0029054:26664-26683 None:intergenic 35.0%
! TTTTCTATTACATCAGCTCC+TGG + tig0029054:26663-26682 Msa1440270:CDS 35.0%
GCACGAGTATTTATTTACCT+TGG - tig0029054:26757-26776 None:intergenic 35.0%
AGGTTTAACTATACCTTGGT+AGG - tig0029054:26956-26975 None:intergenic 35.0%
TAATGGCCAGATCATCAAAA+AGG - tig0029054:26976-26995 None:intergenic 35.0%
! CTAAGAATTGATGGACCTTA+TGG + tig0029054:27127-27146 Msa1440270:CDS 35.0%
!!! TAGTTTTTGTAGTCTTGTGC+TGG - tig0029054:27157-27176 None:intergenic 35.0%
TACGAAGTTCTTCTTCTAGT+AGG + tig0029054:27175-27194 Msa1440270:CDS 35.0%
CAAGAAGAAGACTTAGAAGA+AGG + tig0029054:27262-27281 Msa1440270:CDS 35.0%
AAGAAGACTTAGAAGAAGGA+GGG + tig0029054:27266-27285 Msa1440270:CDS 35.0%
GGTTCGTTTGAATGGTTTAA+AGG + tig0029054:27373-27392 Msa1440270:CDS 35.0%
! AACTACATCCACACCATTTT+TGG - tig0029054:27527-27546 None:intergenic 35.0%
ATATAGCTAGCTCCATTTGA+TGG + tig0029054:27938-27957 Msa1440270:three_prime_UTR 35.0%
TTACAACTCCATCCATCAAA+TGG - tig0029054:27953-27972 None:intergenic 35.0%
AAGAGAGCAAACATGAGTCA+TGG + tig0029054:20810-20829 Msa1440270:CDS 40.0%
!!! CGCTGTTTTTTGGATGCTAA+AGG - tig0029054:20899-20918 None:intergenic 40.0%
AACCGAAGCAAGAACAAAAG+TGG + tig0029054:20920-20939 Msa1440270:CDS 40.0%
GAACAAAAGTGGAAGCTTCA+AGG + tig0029054:20931-20950 Msa1440270:CDS 40.0%
! TGAAATGGTGGAGATAACGT+TGG + tig0029054:20961-20980 Msa1440270:CDS 40.0%
CGGTTTCCGTTCAGAATATT+CGG + tig0029054:20999-21018 Msa1440270:CDS 40.0%
GGTTTCCGTTCAGAATATTC+GGG + tig0029054:21000-21019 Msa1440270:CDS 40.0%
GTTTCCGTTCAGAATATTCG+GGG + tig0029054:21001-21020 Msa1440270:CDS 40.0%
TAAACTAAGACAGGTGTCTC+AGG + tig0029054:21087-21106 Msa1440270:CDS 40.0%
AAAACGTTGGAAGTGAAGGT+TGG + tig0029054:21206-21225 Msa1440270:CDS 40.0%
TCTAGTATGCATGCATGTCT+AGG + tig0029054:21709-21728 Msa1440270:intron 40.0%
TTTCACTAACGTCTGTAGCA+TGG - tig0029054:21887-21906 None:intergenic 40.0%
TCGCAACTCTTCCTTTGTTA+TGG - tig0029054:22242-22261 None:intergenic 40.0%
! AGGAAGAGTTGCGAGAATTT+TGG + tig0029054:22248-22267 Msa1440270:CDS 40.0%
! GGAAGAGTTGCGAGAATTTT+GGG + tig0029054:22249-22268 Msa1440270:CDS 40.0%
ACTTGTCAGCATGAAAGAGA+TGG + tig0029054:22454-22473 Msa1440270:intron 40.0%
!! TGGCCAAACGGGTTTTATAT+TGG + tig0029054:22474-22493 Msa1440270:intron 40.0%
ACGCCAATATAAAACCCGTT+TGG - tig0029054:22480-22499 None:intergenic 40.0%
AGAAAACTTAGCACTCGACT+TGG - tig0029054:22542-22561 None:intergenic 40.0%
TACCTCCGTCCCTAATTATA+GGG - tig0029054:22675-22694 None:intergenic 40.0%
ATTATTGGGTCATGCTAACC+AGG + tig0029054:23125-23144 Msa1440270:intron 40.0%
! AACCAGGTTTTCTGTGACAT+TGG + tig0029054:23141-23160 Msa1440270:intron 40.0%
AACCAATGTCACAGAAAACC+TGG - tig0029054:23146-23165 None:intergenic 40.0%
ATTGGTTAGAACGATCATGC+TGG + tig0029054:23159-23178 Msa1440270:intron 40.0%
AACGATCATGCTGGTATTTC+TGG + tig0029054:23168-23187 Msa1440270:intron 40.0%
ACGATCATGCTGGTATTTCT+GGG + tig0029054:23169-23188 Msa1440270:intron 40.0%
TTATCCCTGCTGGTGAATAT+TGG + tig0029054:23613-23632 Msa1440270:intron 40.0%
!! AAGGGTGTCATATATGTGCA+TGG + tig0029054:23954-23973 Msa1440270:intron 40.0%
CTTTAGTAGGGACTAACTTC+TGG - tig0029054:24783-24802 None:intergenic 40.0%
ATAGCCCATGACATGGAAAA+CGG - tig0029054:24947-24966 None:intergenic 40.0%
CATGTTAAACTTGAGCGTCT+CGG - tig0029054:24995-25014 None:intergenic 40.0%
ACATACAGGCAACAAGATCA+AGG - tig0029054:25019-25038 None:intergenic 40.0%
! GTGATGGTGTTTCTACATAC+AGG - tig0029054:25033-25052 None:intergenic 40.0%
!!! TGCTTGACTTGCACTTTTTG+TGG + tig0029054:25191-25210 Msa1440270:intron 40.0%
!! TGACTTGCACTTTTTGTGGT+TGG + tig0029054:25195-25214 Msa1440270:intron 40.0%
AATATACCCTACCATGTCGA+GGG - tig0029054:25476-25495 None:intergenic 40.0%
! TTTGGAATTGCAATTGGGGT+TGG + tig0029054:25784-25803 Msa1440270:CDS 40.0%
CTGTGGCGTGTAATAATCTT+GGG - tig0029054:25843-25862 None:intergenic 40.0%
TCTGTGGCGTGTAATAATCT+TGG - tig0029054:25844-25863 None:intergenic 40.0%
GGGTTCATATTCTTCATCTG+TGG - tig0029054:25860-25879 None:intergenic 40.0%
AACCTTGGTTTCGTCGTAAT+AGG + tig0029054:25998-26017 Msa1440270:CDS 40.0%
AAACCAGTGAGTTTCTTGAG+GGG - tig0029054:26039-26058 None:intergenic 40.0%
GCGGTTCCAATGATACTATA+CGG + tig0029054:26286-26305 Msa1440270:CDS 40.0%
TCGCATCCGTATAGTATCAT+TGG - tig0029054:26295-26314 None:intergenic 40.0%
CTACTTCGTGCATTTAGATC+TGG + tig0029054:26319-26338 Msa1440270:CDS 40.0%
TTGCATGTGTCTAAACCACA+AGG + tig0029054:26483-26502 Msa1440270:CDS 40.0%
TGCATGTGTCTAAACCACAA+GGG + tig0029054:26484-26503 Msa1440270:CDS 40.0%
CTAGTGTACTTAAACCCTTG+TGG - tig0029054:26501-26520 None:intergenic 40.0%
CAAGGGTTTAAGTACACTAG+TGG + tig0029054:26501-26520 Msa1440270:CDS 40.0%
CAGATATCTCCCCATTTGAA+TGG + tig0029054:26547-26566 Msa1440270:CDS 40.0%
AGGCACATACCATTCAAATG+GGG - tig0029054:26559-26578 None:intergenic 40.0%
TGTAATAGAAAAGGGATGCC+TGG - tig0029054:26655-26674 None:intergenic 40.0%
ACGCTTATATAGTCATCTCC+AGG - tig0029054:26684-26703 None:intergenic 40.0%
AAGCGTTCACATTCGAACTT+TGG + tig0029054:26698-26717 Msa1440270:CDS 40.0%
AGCGTTCACATTCGAACTTT+GGG + tig0029054:26699-26718 Msa1440270:CDS 40.0%
ACATTCGAACTTTGGGTGAT+TGG + tig0029054:26706-26725 Msa1440270:CDS 40.0%
ATGCCAAGGCTAAGAATTGA+TGG + tig0029054:27118-27137 Msa1440270:CDS 40.0%
GTTCTTCTTCTAGTAGGACT+AGG + tig0029054:27181-27200 Msa1440270:CDS 40.0%
CTTCTAGTAGGACTAGGAAT+CGG + tig0029054:27187-27206 Msa1440270:CDS 40.0%
GAAGAAGACTTAGAAGAAGG+AGG + tig0029054:27265-27284 Msa1440270:CDS 40.0%
AGAAGACTTAGAAGAAGGAG+GGG + tig0029054:27267-27286 Msa1440270:CDS 40.0%
!! CAAGCGAGCCTATTTCTATT+GGG + tig0029054:27336-27355 Msa1440270:CDS 40.0%
GCGAGTAACCCAATAGAAAT+AGG - tig0029054:27347-27366 None:intergenic 40.0%
GTTTAAAGGGGTGATGAATG+AGG + tig0029054:27387-27406 Msa1440270:CDS 40.0%
TGCACAAGTGTGTATGAAGA+AGG + tig0029054:27454-27473 Msa1440270:CDS 40.0%
!!! ACCATTTTTGGCATGGTGAA+GGG - tig0029054:27515-27534 None:intergenic 40.0%
TGGATGTAGTTTCAGAGACA+AGG + tig0029054:27536-27555 Msa1440270:CDS 40.0%
GGATGTAGTTTCAGAGACAA+GGG + tig0029054:27537-27556 Msa1440270:CDS 40.0%
! GGGTTAAGACACATTTTGCT+AGG + tig0029054:27557-27576 Msa1440270:CDS 40.0%
! CACATTTTGCTAGGCCAAAT+TGG + tig0029054:27566-27585 Msa1440270:CDS 40.0%
CGAACTAAGAAGGCTTTCTT+TGG + tig0029054:27769-27788 Msa1440270:CDS 40.0%
GCACACAGATTCTACGTACT+TGG + tig0029054:20716-20735 Msa1440270:five_prime_UTR 45.0%
GAGCAAACATGAGTCATGGT+CGG + tig0029054:20814-20833 Msa1440270:CDS 45.0%
!!! GCTTCGGTTTCGCTGTTTTT+TGG - tig0029054:20909-20928 None:intergenic 45.0%
AGTGGAAGCTTCAAGGATGA+CGG + tig0029054:20938-20957 Msa1440270:CDS 45.0%
! CTTCAAGGATGACGGTGAAA+TGG + tig0029054:20946-20965 Msa1440270:CDS 45.0%
TCCACCCCGAATATTCTGAA+CGG - tig0029054:21008-21027 None:intergenic 45.0%
GCTTTCGGCTAAACTAAGAC+AGG + tig0029054:21078-21097 Msa1440270:CDS 45.0%
! GAAGCGCATGACGTCTTTTA+AGG + tig0029054:21114-21133 Msa1440270:CDS 45.0%
!! TTTTGATGAGTTGGCTGTGG+AGG + tig0029054:21246-21265 Msa1440270:CDS 45.0%
! TTTGATGAGTTGGCTGTGGA+GGG + tig0029054:21247-21266 Msa1440270:CDS 45.0%
! CACTGGCTAAATCGAGTCTT+GGG - tig0029054:21280-21299 None:intergenic 45.0%
ACTCGATTTAGCCAGTGCAT+AGG + tig0029054:21283-21302 Msa1440270:CDS 45.0%
ACATGGACATACCTATGCAC+TGG - tig0029054:21297-21316 None:intergenic 45.0%
AACGAGTCAAAGGAGTTTGC+TGG + tig0029054:22169-22188 Msa1440270:CDS 45.0%
GCATGAAAGAGATGGCCAAA+CGG + tig0029054:22462-22481 Msa1440270:intron 45.0%
CATGAAAGAGATGGCCAAAC+GGG + tig0029054:22463-22482 Msa1440270:intron 45.0%
TAATTAGGGACGGAGGTAGT+AGG - tig0029054:22949-22968 None:intergenic 45.0%
! GGTCTTATAATTAGGGACGG+AGG - tig0029054:22680-22699 None:intergenic 45.0%
AAGGGCCCTATAATTAGGGA+CGG + tig0029054:22939-22958 Msa1440270:intron 45.0%
CTACCTCCGTCCCTAATTAT+AGG - tig0029054:22674-22693 None:intergenic 45.0%
CCAGCAGGGATAATTTCCTA+TGG - tig0029054:23606-23625 None:intergenic 45.0%
CCATAGGAAATTATCCCTGC+TGG + tig0029054:23603-23622 Msa1440270:intron 45.0%
! CTTATTGGCCGAAGCACTTA+AGG - tig0029054:24414-24433 None:intergenic 45.0%
GGAATATGCTGCCCTTATCA+TGG + tig0029054:24460-24479 Msa1440270:CDS 45.0%
ATATGCTGCCCTTATCATGG+AGG + tig0029054:24463-24482 Msa1440270:CDS 45.0%
GTTATGTGAGCTGATTGTGC+TGG - tig0029054:24727-24746 None:intergenic 45.0%
! TTTGCGCAGCACTTTTCACT+TGG + tig0029054:24896-24915 Msa1440270:CDS 45.0%
TGACACAATAGCCCATGACA+TGG - tig0029054:24954-24973 None:intergenic 45.0%
TATTGTGTCACCACGGCTAA+GGG + tig0029054:24964-24983 Msa1440270:CDS 45.0%
CGAGACGCTCAAGTTTAACA+TGG + tig0029054:24993-25012 Msa1440270:CDS 45.0%
GAAACACCATCACTTGGCTT+AGG + tig0029054:25040-25059 Msa1440270:CDS 45.0%
ATATACCCTACCATGTCGAG+GGG - tig0029054:25475-25494 None:intergenic 45.0%
CAATATACCCTACCATGTCG+AGG - tig0029054:25477-25496 None:intergenic 45.0%
CTCGACATGGTAGGGTATAT+TGG + tig0029054:25475-25494 Msa1440270:intron 45.0%
TGGTTCGTTAAAGGAACCGA+GGG + tig0029054:25922-25941 Msa1440270:CDS 45.0%
TGTGGTCATGGTTGTGCTTA+TGG + tig0029054:25954-25973 Msa1440270:CDS 45.0%
AGCCTATTACGACGAAACCA+AGG - tig0029054:26003-26022 None:intergenic 45.0%
!!! GTTTCTTGAGGGGTTTTGGA+AGG - tig0029054:26029-26048 None:intergenic 45.0%
! GTGAGTTTCTTGAGGGGTTT+TGG - tig0029054:26033-26052 None:intergenic 45.0%
AAACCCCTCAAGAAACTCAC+TGG + tig0029054:26033-26052 Msa1440270:CDS 45.0%
GATCTGGCTACAAATCTGTG+AGG + tig0029054:26335-26354 Msa1440270:CDS 45.0%
TGCAATGCCAGTACATTTCC+CGG - tig0029054:26468-26487 None:intergenic 45.0%
TGATTGGACGTCACAACTGA+AGG + tig0029054:26722-26741 Msa1440270:CDS 45.0%
GATTGGACGTCACAACTGAA+GGG + tig0029054:26723-26742 Msa1440270:CDS 45.0%
!!! ACTGAAGGGTATTTTCGCCA+AGG + tig0029054:26737-26756 Msa1440270:CDS 45.0%
TTCATCGTCATGGTTTACGC+AGG + tig0029054:26863-26882 Msa1440270:intron 45.0%
CCACTTTGGTCATCATTTGC+TGG - tig0029054:26897-26916 None:intergenic 45.0%
CCAGCAAATGATGACCAAAG+TGG + tig0029054:26894-26913 Msa1440270:CDS 45.0%
CAGCTCTTAGAAGACCACTT+TGG - tig0029054:26911-26930 None:intergenic 45.0%
CTAAGAGCTGATATGCTACC+AGG + tig0029054:26921-26940 Msa1440270:CDS 45.0%
GGTCCATCAATTCTTAGCCT+TGG - tig0029054:27124-27143 None:intergenic 45.0%
CCAATAGAAATAGGCTCGCT+TGG - tig0029054:27338-27357 None:intergenic 45.0%
!! CCAAGCGAGCCTATTTCTAT+TGG + tig0029054:27335-27354 Msa1440270:CDS 45.0%
!! TGAGGTAGCGGAGAATGATA+AGG + tig0029054:27405-27424 Msa1440270:CDS 45.0%
! GTAGCGGAGAATGATAAGGA+AGG + tig0029054:27409-27428 Msa1440270:CDS 45.0%
TCCCTTCACCATGCCAAAAA+TGG + tig0029054:27511-27530 Msa1440270:CDS 45.0%
!!! CACCATTTTTGGCATGGTGA+AGG - tig0029054:27516-27535 None:intergenic 45.0%
TCACCATGCCAAAAATGGTG+TGG + tig0029054:27516-27535 Msa1440270:CDS 45.0%
!!! CATCCACACCATTTTTGGCA+TGG - tig0029054:27522-27541 None:intergenic 45.0%
! GATTGGTTGGCGAACTAAGA+AGG + tig0029054:27759-27778 Msa1440270:CDS 45.0%
AGCTAGCTCCATTTGATGGA+TGG + tig0029054:27942-27961 Msa1440270:three_prime_UTR 45.0%
!!! TAAGTTTTTTAAAAAAAAAA+GGG + tig0029054:21986-22005 Msa1440270:intron 5.0%
!!! AAATAATATTAGTTTTTTTT+TGG - tig0029054:22113-22132 None:intergenic 5.0%
!!! ACTAATATTATTTTTTAATT+TGG + tig0029054:22120-22139 Msa1440270:intron 5.0%
!!! CTAATATTATTTTTTAATTT+GGG + tig0029054:22121-22140 Msa1440270:intron 5.0%
!!! TAATATTATTTTTTAATTTG+GGG + tig0029054:22122-22141 Msa1440270:intron 5.0%
! CAAGGATGACGGTGAAATGG+TGG + tig0029054:20949-20968 Msa1440270:CDS 50.0%
GAACGGAAACCGAGTCATCA+CGG - tig0029054:20991-21010 None:intergenic 50.0%
TCCGTTCAGAATATTCGGGG+TGG + tig0029054:21004-21023 Msa1440270:CDS 50.0%
AGTTTAGCCGAAAGCGACGA+CGG - tig0029054:21073-21092 None:intergenic 50.0%
!! GCGTTTTGATGAGTTGGCTG+TGG + tig0029054:21243-21262 Msa1440270:CDS 50.0%
!! GCACTGGCTAAATCGAGTCT+TGG - tig0029054:21281-21300 None:intergenic 50.0%
TATACCTCGACGACGTGCTA+AGG - tig0029054:22209-22228 None:intergenic 50.0%
GACGGAGGTAGTAGGAAACA+AGG - tig0029054:22665-22684 None:intergenic 50.0%
TCAGCATTCTTGTCCACCCT+GGG - tig0029054:24180-24199 None:intergenic 50.0%
ATCAGCATTCTTGTCCACCC+TGG - tig0029054:24181-24200 None:intergenic 50.0%
AGGGTGGACAAGAATGCTGA+TGG + tig0029054:24180-24199 Msa1440270:intron 50.0%
GTCCAGCTCCTCCATGATAA+GGG - tig0029054:24474-24493 None:intergenic 50.0%
AAACGGCACGACGTTTGTAC+TGG - tig0029054:24930-24949 None:intergenic 50.0%
!!! TCGTGCCGTTTTCCATGTCA+TGG + tig0029054:24939-24958 Msa1440270:CDS 50.0%
!!! CGTGCCGTTTTCCATGTCAT+GGG + tig0029054:24940-24959 Msa1440270:CDS 50.0%
! CATGGGCTATTGTGTCACCA+CGG + tig0029054:24957-24976 Msa1440270:CDS 50.0%
CTATTGTGTCACCACGGCTA+AGG + tig0029054:24963-24982 Msa1440270:CDS 50.0%
CCTACTCCTAAGCCAAGTGA+TGG - tig0029054:25049-25068 None:intergenic 50.0%
CCATCACTTGGCTTAGGAGT+AGG + tig0029054:25046-25065 Msa1440270:CDS 50.0%
!! GGTCACTGGTGCTATCAACA+CGG + tig0029054:25426-25445 Msa1440270:intron 50.0%
CATGTCGAGGGGCTATTTGT+GGG - tig0029054:25464-25483 None:intergenic 50.0%
AAATAGCCCCTCGACATGGT+AGG + tig0029054:25466-25485 Msa1440270:intron 50.0%
AATAGCCCCTCGACATGGTA+GGG + tig0029054:25467-25486 Msa1440270:intron 50.0%
GTGGTTCGTTAAAGGAACCG+AGG + tig0029054:25921-25940 Msa1440270:CDS 50.0%
TCGTTAAAGGAACCGAGGGT+TGG + tig0029054:25926-25945 Msa1440270:CDS 50.0%
AAGCACAACCATGACCACAC+CGG - tig0029054:25953-25972 None:intergenic 50.0%
AATCCAGGTTGCAGTGTACC+CGG + tig0029054:26446-26465 Msa1440270:intron 50.0%
AGTGTACCCGGGAAATGTAC+TGG + tig0029054:26458-26477 Msa1440270:CDS 50.0%
GCAATGCCAGTACATTTCCC+GGG - tig0029054:26467-26486 None:intergenic 50.0%
!! CTTGGTAGGCTTGATTTGCC+TGG - tig0029054:26942-26961 None:intergenic 50.0%
CAGGCAAATCAAGCCTACCA+AGG + tig0029054:26940-26959 Msa1440270:CDS 50.0%
! TCTTGTGCTGGTGCTCCATA+AGG - tig0029054:27145-27164 None:intergenic 50.0%
AGACTTAGAAGAAGGAGGGG+AGG + tig0029054:27270-27289 Msa1440270:CDS 50.0%
TAGGCTCGCTTGGTTGCAAA+AGG - tig0029054:27328-27347 None:intergenic 50.0%
TATTGGGTTACTCGCGAGCA+GGG + tig0029054:27352-27371 Msa1440270:CDS 50.0%
AGGGGTGATGAATGAGGTAG+CGG + tig0029054:27393-27412 Msa1440270:CDS 50.0%
TGTATGAAGAAGGCGACGCT+CGG + tig0029054:27464-27483 Msa1440270:CDS 50.0%
!!! GTTTTTTACTGTGGAGCGCC+TGG + tig0029054:27737-27756 Msa1440270:CDS 50.0%
CTTAGTTCGCCAACCAATCC+AGG - tig0029054:27758-27777 None:intergenic 50.0%
CTTCGGCTTTCTGTGCTCTC+TGG - tig0029054:20842-20861 None:intergenic 55.0%
GCACAGAAAGCCGAAGCTCA+CGG + tig0029054:20846-20865 Msa1440270:CDS 55.0%
CACAGAAAGCCGAAGCTCAC+GGG + tig0029054:20847-20866 Msa1440270:CDS 55.0%
GATGCTAAAGGCCCGCTTAG+CGG - tig0029054:20887-20906 None:intergenic 55.0%
GTTGGACGTCCGTGATGACT+CGG + tig0029054:20979-20998 Msa1440270:CDS 55.0%
GGCCCTATAATTAGGGACGG+AGG + tig0029054:22942-22961 Msa1440270:intron 55.0%
! ACTCGTGTGCCACTATCCCA+GGG + tig0029054:24161-24180 Msa1440270:intron 55.0%
TCTTGTCCACCCTGGGATAG+TGG - tig0029054:24173-24192 None:intergenic 55.0%
TGCCCTTATCATGGAGGAGC+TGG + tig0029054:24469-24488 Msa1440270:CDS 55.0%
GGTCCAGCTCCTCCATGATA+AGG - tig0029054:24475-24494 None:intergenic 55.0%
GAGCTGGACCCAAACAACCT+TGG + tig0029054:24485-24504 Msa1440270:CDS 55.0%
CTTGGCTTAGGAGTAGGACC+AGG + tig0029054:25052-25071 Msa1440270:CDS 55.0%
CTTAGGAGTAGGACCAGGCT+TGG + tig0029054:25057-25076 Msa1440270:CDS 55.0%
GAGTAGGACCAGGCTTGGAA+TGG + tig0029054:25062-25081 Msa1440270:CDS 55.0%
TAGGACCAGGCTTGGAATGG+TGG + tig0029054:25065-25084 Msa1440270:CDS 55.0%
TGGAACCACCATTCCAAGCC+TGG - tig0029054:25073-25092 None:intergenic 55.0%
!! GCTATTTGTGGGTTGGTGCG+TGG - tig0029054:25453-25472 None:intergenic 55.0%
TCGAGGGGCTATTTGTGGGT+TGG - tig0029054:25460-25479 None:intergenic 55.0%
CCATGTCGAGGGGCTATTTG+TGG - tig0029054:25465-25484 None:intergenic 55.0%
CCACAAATAGCCCCTCGACA+TGG + tig0029054:25462-25481 Msa1440270:intron 55.0%
AAAGGAACCGAGGGTTGGAC+CGG + tig0029054:25931-25950 Msa1440270:CDS 55.0%
ATCCAGGTTGCAGTGTACCC+GGG + tig0029054:26447-26466 Msa1440270:intron 55.0%
CTTAGAAGAAGGAGGGGAGG+TGG + tig0029054:27273-27292 Msa1440270:CDS 55.0%
CTATTGGGTTACTCGCGAGC+AGG + tig0029054:27351-27370 Msa1440270:CDS 55.0%
GCGAGCAGGGTTCGTTTGAA+TGG + tig0029054:27365-27384 Msa1440270:CDS 55.0%
! TTACTGTGGAGCGCCTGGAT+TGG + tig0029054:27742-27761 Msa1440270:CDS 55.0%
AGAAAGCCGAAGCTCACGGG+TGG + tig0029054:20850-20869 Msa1440270:CDS 60.0%
GAAAGCCGAAGCTCACGGGT+GGG + tig0029054:20851-20870 Msa1440270:CDS 60.0%
TGAAGCCCACCCGTGAGCTT+CGG - tig0029054:20859-20878 None:intergenic 60.0%
TCGGGGTGGAGACACCGAAA+CGG + tig0029054:21018-21037 Msa1440270:CDS 60.0%
AGACACCGAAACGGCGCTTC+TGG + tig0029054:21027-21046 Msa1440270:CDS 60.0%
!! GCTTGCCAGAAGCGCCGTTT+CGG - tig0029054:21035-21054 None:intergenic 60.0%
AAACGGCGCTTCTGGCAAGC+CGG + tig0029054:21035-21054 Msa1440270:CDS 60.0%
ACGACGGACGCTTCTCAAGC+CGG - tig0029054:21057-21076 None:intergenic 60.0%
! GAAGCGTCCGTCGTCGCTTT+CGG + tig0029054:21063-21082 Msa1440270:CDS 60.0%
!! GGTGCTGCTCGTGCTCTACA+AGG + tig0029054:21166-21185 Msa1440270:CDS 60.0%
GATGCCTTAGCACGTCGTCG+AGG + tig0029054:22202-22221 Msa1440270:CDS 60.0%
! CACTCGTGTGCCACTATCCC+AGG + tig0029054:24160-24179 Msa1440270:intron 60.0%
TGTGTCACCACGGCTAAGGG+CGG + tig0029054:24967-24986 Msa1440270:CDS 60.0%
TTCCCGGGTACACTGCAACC+TGG - tig0029054:26452-26471 None:intergenic 60.0%
!! TGTGGAGCGCCTGGATTGGT+TGG + tig0029054:27746-27765 Msa1440270:CDS 60.0%
! AGCTCACGGGTGGGCTTCAG+CGG + tig0029054:20860-20879 Msa1440270:CDS 65.0%
! CGTGTGCCACTATCCCAGGG+TGG + tig0029054:24164-24183 Msa1440270:intron 65.0%
AACCGAGGGTTGGACCGGTG+TGG + tig0029054:25936-25955 Msa1440270:CDS 65.0%
GACCACACCGGTCCAACCCT+CGG - tig0029054:25941-25960 None:intergenic 65.0%
GGGTTGGACCGGTGTGGTCA+TGG + tig0029054:25942-25961 Msa1440270:CDS 65.0%
! GCTCACGGGTGGGCTTCAGC+GGG + tig0029054:20861-20880 Msa1440270:CDS 70.0%
GGCTTCAGCGGGCCGCTAAG+CGG + tig0029054:20872-20891 Msa1440270:CDS 70.0%
GCTTCAGCGGGCCGCTAAGC+GGG + tig0029054:20873-20892 Msa1440270:CDS 70.0%
CTCGGCACCGCCCTTAGCCG+TGG - tig0029054:24977-24996 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0029054 gene 20524 28045 20524 ID=Msa1440270;Name=Msa1440270
tig0029054 mRNA 20524 28045 20524 ID=Msa1440270-mRNA-1;Parent=Msa1440270;Name=Msa1440270-mRNA-1;_AED=0.08;_eAED=0.08;_QI=276|1|0.91|1|1|1|12|201|888
tig0029054 exon 20524 21304 20524 ID=Msa1440270-mRNA-1:exon:12175;Parent=Msa1440270-mRNA-1
tig0029054 exon 22164 22323 22164 ID=Msa1440270-mRNA-1:exon:12176;Parent=Msa1440270-mRNA-1
tig0029054 exon 24182 24230 24182 ID=Msa1440270-mRNA-1:exon:12177;Parent=Msa1440270-mRNA-1
tig0029054 exon 24404 24517 24404 ID=Msa1440270-mRNA-1:exon:12178;Parent=Msa1440270-mRNA-1
tig0029054 exon 24691 25119 24691 ID=Msa1440270-mRNA-1:exon:12179;Parent=Msa1440270-mRNA-1
tig0029054 exon 25775 26161 25775 ID=Msa1440270-mRNA-1:exon:12180;Parent=Msa1440270-mRNA-1
tig0029054 exon 26271 26366 26271 ID=Msa1440270-mRNA-1:exon:12181;Parent=Msa1440270-mRNA-1
tig0029054 exon 26453 26568 26453 ID=Msa1440270-mRNA-1:exon:12182;Parent=Msa1440270-mRNA-1
tig0029054 exon 26656 26758 26656 ID=Msa1440270-mRNA-1:exon:12183;Parent=Msa1440270-mRNA-1
tig0029054 exon 26885 26961 26885 ID=Msa1440270-mRNA-1:exon:12184;Parent=Msa1440270-mRNA-1
tig0029054 exon 27117 27637 27117 ID=Msa1440270-mRNA-1:exon:12185;Parent=Msa1440270-mRNA-1
tig0029054 exon 27735 28045 27735 ID=Msa1440270-mRNA-1:exon:12186;Parent=Msa1440270-mRNA-1
tig0029054 five_prime_UTR 20524 20799 20524 ID=Msa1440270-mRNA-1:five_prime_utr;Parent=Msa1440270-mRNA-1
tig0029054 CDS 20800 21304 20800 ID=Msa1440270-mRNA-1:cds;Parent=Msa1440270-mRNA-1
tig0029054 CDS 22164 22323 22164 ID=Msa1440270-mRNA-1:cds;Parent=Msa1440270-mRNA-1
tig0029054 CDS 24182 24230 24182 ID=Msa1440270-mRNA-1:cds;Parent=Msa1440270-mRNA-1
tig0029054 CDS 24404 24517 24404 ID=Msa1440270-mRNA-1:cds;Parent=Msa1440270-mRNA-1
tig0029054 CDS 24691 25119 24691 ID=Msa1440270-mRNA-1:cds;Parent=Msa1440270-mRNA-1
tig0029054 CDS 25775 26161 25775 ID=Msa1440270-mRNA-1:cds;Parent=Msa1440270-mRNA-1
tig0029054 CDS 26271 26366 26271 ID=Msa1440270-mRNA-1:cds;Parent=Msa1440270-mRNA-1
tig0029054 CDS 26453 26568 26453 ID=Msa1440270-mRNA-1:cds;Parent=Msa1440270-mRNA-1
tig0029054 CDS 26656 26758 26656 ID=Msa1440270-mRNA-1:cds;Parent=Msa1440270-mRNA-1
tig0029054 CDS 26885 26961 26885 ID=Msa1440270-mRNA-1:cds;Parent=Msa1440270-mRNA-1
tig0029054 CDS 27117 27637 27117 ID=Msa1440270-mRNA-1:cds;Parent=Msa1440270-mRNA-1
tig0029054 CDS 27735 27844 27735 ID=Msa1440270-mRNA-1:cds;Parent=Msa1440270-mRNA-1
tig0029054 three_prime_UTR 27845 28045 27845 ID=Msa1440270-mRNA-1:three_prime_utr;Parent=Msa1440270-mRNA-1
Gene Sequence

>Msa1440270

ATGGAAGTTCAAGAGAGCAAACATGAGTCATGGTCGGAGCCAGAGAGCACAGAAAGCCGAAGCTCACGGGTGGGCTTCAGCGGGCCGCTAAGCGGGCCTTTAGCATCCAAAAAACAGCGAAACCGAAGCAAGAACAAAAGTGGAAGCTTCAAGGATGACGGTGAAATGGTGGAGATAACGTTGGACGTCCGTGATGACTCGGTTTCCGTTCAGAATATTCGGGGTGGAGACACCGAAACGGCGCTTCTGGCAAGCCGGCTTGAGAAGCGTCCGTCGTCGCTTTCGGCTAAACTAAGACAGGTGTCTCAGGAGCTGAAGCGCATGACGTCTTTTAAGGCGTTTGATAAGGTTGATAGATCAAAATCTGGTGCTGCTCGTGCTCTACAAGGTCTTAAGTTTATGACAAAAAACGTTGGAAGTGAAGGTTGGTCCCAAGTTGAAAAGCGTTTTGATGAGTTGGCTGTGGAGGGAAAATTGCCCAAGACTCGATTTAGCCAGTGCATAGGAATGAACGAGTCAAAGGAGTTTGCTGGTGAGTTATTTGATGCCTTAGCACGTCGTCGAGGTATAGTAGTTGCTTCCATAACAAAGGAAGAGTTGCGAGAATTTTGGGACCAAATTACAGATCAAAGCTTTGATTCAAGGCTTCAAACCTTTTTTGGCATGGTGGACAAGAATGCTGATGGAAGAATTACAGAAGAAGAAGTAAAAGAGATTATTGCCTTAAGTGCTTCGGCCAATAAGCTATCAAAATTACAAGAACGAGCAGAGGAATATGCTGCCCTTATCATGGAGGAGCTGGACCCAAACAACCTTGGATATATTGAGCTGTACAACTTGGAAATGCTTCTTTTACAAGCTCCAGCACAATCAGCTCACATAACTACAGATAGTAGGGTTTTGAGCCAAATGTTAAGCCAGAAGTTAGTCCCTACTAAAGAGCACAATCCTATTAAACGGGCTTTTAGAGAACTAGCTTATTTTATGGAGGACAATTGGAAACGTATTTGGATCATAGCTCTATGGCTTTCAATTTGCGCAGCACTTTTCACTTGGAAGTTCATCCAGTACAAACGTCGTGCCGTTTTCCATGTCATGGGCTATTGTGTCACCACGGCTAAGGGCGGTGCCGAGACGCTCAAGTTTAACATGGCCTTGATCTTGTTGCCTGTATGTAGAAACACCATCACTTGGCTTAGGAGTAGGACCAGGCTTGGAATGGTGGTTCCATTTGATGACAATATCAACTTTCACAAGGTGATAGCTTTTGGAATTGCAATTGGGGTTGGATTACATGCAATTTCACATTTAACTTGCGACTTCCCAAGATTATTACACGCCACAGATGAAGAATATGAACCCATGAAACAGTTTTTTGGAGATGAAAGACCTGATAATTATTGGTGGTTCGTTAAAGGAACCGAGGGTTGGACCGGTGTGGTCATGGTTGTGCTTATGGCTATAGCTTTCATTTTAGCACAACCTTGGTTTCGTCGTAATAGGCTAAACCTTCCAAAACCCCTCAAGAAACTCACTGGTTTTAATGCATTTTGGTATTCACATCACCTTTTTGTCATTGTATATGTTCTTTTTATCATTCATGGATACTTCCTTTACCTTAGCAAGAAATGGTATAAGAAAACGACATGGATGTATCTTGCGGTTCCAATGATACTATACGGATGCGAAAGACTACTTCGTGCATTTAGATCTGGCTACAAATCTGTGAGGATACTAAAGGTTGCAGTGTACCCGGGAAATGTACTGGCATTGCATGTGTCTAAACCACAAGGGTTTAAGTACACTAGTGGACAGTATATTTATGTTAATTGTTCAGATATCTCCCCATTTGAATGGCATCCCTTTTCTATTACATCAGCTCCTGGAGATGACTATATAAGCGTTCACATTCGAACTTTGGGTGATTGGACGTCACAACTGAAGGGTATTTTCGCCAAGGCATGTCAACCAGCAAATGATGACCAAAGTGGTCTTCTAAGAGCTGATATGCTACCAGGCAAATCAAGCCTACCAAGGATGCCAAGGCTAAGAATTGATGGACCTTATGGAGCACCAGCACAAGACTACAAAAACTACGAAGTTCTTCTTCTAGTAGGACTAGGAATCGGTGCAACGCCTTTGATTAGCATACTCAAAGATGTGCTAAACAACATTAAGCAACAAGAAGAAGACTTAGAAGAAGGAGGGGAGGTGGAAAGCGAAGTTAAGAACAATAAGAAAAAGCCTTTTGCAACCAAGCGAGCCTATTTCTATTGGGTTACTCGCGAGCAGGGTTCGTTTGAATGGTTTAAAGGGGTGATGAATGAGGTAGCGGAGAATGATAAGGAAGGAGTAATTGAGCTTCATAACTATTGCACAAGTGTGTATGAAGAAGGCGACGCTCGGTCAGCTTTGATCACAATGCTTCAATCCCTTCACCATGCCAAAAATGGTGTGGATGTAGTTTCAGAGACAAGGGTTAAGACACATTTTGCTAGGCCAAATTGGCGTAATGTTTATAAACATGTTGCTCTTAAACACCCTGAAAAAAAAGTTGGTGTTTTTTACTGTGGAGCGCCTGGATTGGTTGGCGAACTAAGAAGGCTTTCTTTGGACTTTTCAAGAAAAACTGGCACCAAGTTTGATTTTCATAAAGAGAATTTTTAG
Protein sequence

>Msa1440270

MEVQESKHESWSEPESTESRSSRVGFSGPLSGPLASKKQRNRSKNKSGSFKDDGEMVEITLDVRDDSVSVQNIRGGDTETALLASRLEKRPSSLSAKLRQVSQELKRMTSFKAFDKVDRSKSGAARALQGLKFMTKNVGSEGWSQVEKRFDELAVEGKLPKTRFSQCIGMNESKEFAGELFDALARRRGIVVASITKEELREFWDQITDQSFDSRLQTFFGMVDKNADGRITEEEVKEIIALSASANKLSKLQERAEEYAALIMEELDPNNLGYIELYNLEMLLLQAPAQSAHITTDSRVLSQMLSQKLVPTKEHNPIKRAFRELAYFMEDNWKRIWIIALWLSICAALFTWKFIQYKRRAVFHVMGYCVTTAKGGAETLKFNMALILLPVCRNTITWLRSRTRLGMVVPFDDNINFHKVIAFGIAIGVGLHAISHLTCDFPRLLHATDEEYEPMKQFFGDERPDNYWWFVKGTEGWTGVVMVVLMAIAFILAQPWFRRNRLNLPKPLKKLTGFNAFWYSHHLFVIVYVLFIIHGYFLYLSKKWYKKTTWMYLAVPMILYGCERLLRAFRSGYKSVRILKVAVYPGNVLALHVSKPQGFKYTSGQYIYVNCSDISPFEWHPFSITSAPGDDYISVHIRTLGDWTSQLKGIFAKACQPANDDQSGLLRADMLPGKSSLPRMPRLRIDGPYGAPAQDYKNYEVLLLVGLGIGATPLISILKDVLNNIKQQEEDLEEGGEVESEVKNNKKKPFATKRAYFYWVTREQGSFEWFKGVMNEVAENDKEGVIELHNYCTSVYEEGDARSALITMLQSLHHAKNGVDVVSETRVKTHFARPNWRNVYKHVALKHPEKKVGVFYCGAPGLVGELRRLSLDFSRKTGTKFDFHKENF*