AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0172740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172740 MtrunA17_Chr1g0192121 97.750 889 15 2 1 888 1 885 0.0 1801
Msa0172740 MtrunA17_Chr7g0272591 83.203 893 141 6 2 888 6 895 0.0 1537
Msa0172740 MtrunA17_Chr3g0131401 60.222 900 317 12 26 888 28 923 0.0 1123
Msa0172740 MtrunA17_Chr8g0385411 61.601 862 306 8 49 888 40 898 0.0 1112
Msa0172740 MtrunA17_Chr8g0387591 63.544 790 264 9 116 888 162 944 0.0 1030
Msa0172740 MtrunA17_Chr3g0131381 54.715 912 357 14 29 888 10 917 0.0 974
Msa0172740 MtrunA17_Chr3g0131361 53.104 902 377 16 21 888 21 910 0.0 941
Msa0172740 MtrunA17_Chr2g0301511 52.472 890 357 13 55 888 52 931 0.0 901
Msa0172740 MtrunA17_Chr7g0238371 53.778 794 336 11 116 888 68 851 0.0 872
Msa0172740 MtrunA17_Chr4g0061441 48.289 789 356 13 115 888 79 830 0.0 749
Msa0172740 MtrunA17_Chr2g0291481 28.099 242 146 7 514 752 293 509 7.25e-22 101
Msa0172740 MtrunA17_Chr4g0058571 25.610 246 140 6 479 721 257 462 2.12e-18 90.5
Msa0172740 MtrunA17_Chr1g0202731 25.764 229 133 6 503 729 263 456 2.25e-18 90.5
Msa0172740 MtrunA17_Chr1g0202741 24.891 229 135 6 503 729 258 451 1.19e-16 84.7
Msa0172740 MtrunA17_Chr8g0348531 25.225 222 110 6 514 722 281 459 2.16e-15 80.9
Msa0172740 MtrunA17_Chr8g0349071 25.943 212 121 6 514 722 37 215 8.51e-14 73.2
Msa0172740 MtrunA17_Chr8g0348521 26.415 212 120 6 514 722 268 446 1.82e-13 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172740 AT1G09090.2 68.042 848 238 9 47 888 23 843 0.0 1196
Msa0172740 AT5G47910.1 63.646 905 285 16 17 888 28 921 0.0 1164
Msa0172740 AT5G51060.1 62.262 893 308 11 22 888 16 905 0.0 1147
Msa0172740 AT5G07390.1 59.039 874 319 11 47 888 36 902 0.0 1041
Msa0172740 AT4G25090.1 60.870 782 285 8 116 888 80 849 0.0 1018
Msa0172740 AT4G25090.2 60.385 780 280 9 116 888 80 837 0.0 1001
Msa0172740 AT1G64060.1 55.568 916 324 13 49 888 36 944 0.0 992
Msa0172740 AT5G07390.2 55.294 850 291 14 47 855 36 837 0.0 914
Msa0172740 AT1G19230.2 49.615 909 367 12 55 888 60 952 0.0 869
Msa0172740 AT4G11230.1 56.195 799 306 13 118 888 159 941 0.0 861
Msa0172740 AT1G09090.1 67.590 614 174 7 47 654 23 617 0.0 861
Msa0172740 AT1G19230.1 49.503 905 348 12 55 888 60 926 0.0 856
Msa0172740 AT5G60010.1 50.814 799 359 12 116 888 96 886 0.0 824
Msa0172740 AT3G45810.1 48.837 817 364 13 116 888 106 912 0.0 782
Msa0172740 AT5G49740.1 28.692 237 145 6 514 747 291 506 1.48e-23 107
Msa0172740 AT5G49740.2 28.692 237 145 6 514 747 291 506 1.57e-23 106
Msa0172740 AT5G49740.3 28.692 237 145 6 514 747 291 506 2.19e-23 106
Msa0172740 AT5G49730.2 28.270 237 146 6 514 747 282 497 6.01e-23 104
Msa0172740 AT5G49730.1 28.270 237 146 6 514 747 282 497 6.46e-23 105
Msa0172740 AT5G50160.2 27.236 246 135 6 479 721 61 265 6.30e-22 101
Msa0172740 AT5G50160.1 27.236 246 135 6 479 721 240 444 3.34e-21 99.8
Msa0172740 AT5G23990.1 26.562 256 137 7 480 732 196 403 1.99e-19 94.0
Msa0172740 AT5G23990.3 26.562 256 137 7 480 732 106 313 3.42e-19 92.8
Msa0172740 AT1G01580.2 21.516 409 225 13 342 728 214 548 6.83e-19 92.4
Msa0172740 AT5G23980.1 25.483 259 143 6 479 734 236 447 8.02e-19 92.0
Msa0172740 AT5G23990.2 26.562 256 137 7 480 732 238 445 8.97e-19 92.0
Msa0172740 AT1G01580.1 21.516 409 225 13 342 728 136 470 1.08e-18 91.7
Msa0172740 AT1G23020.2 27.358 212 118 6 514 722 300 478 7.85e-18 89.0
Msa0172740 AT1G23020.1 27.358 212 118 6 514 722 299 477 8.26e-18 89.0
Msa0172740 AT1G23020.5 27.358 212 118 6 514 722 299 477 8.26e-18 89.0
Msa0172740 AT1G23020.6 27.358 212 118 6 514 722 277 455 9.48e-18 88.6
Msa0172740 AT1G23020.4 27.358 212 118 6 514 722 276 454 1.04e-17 88.6
Msa0172740 AT1G23020.3 27.358 212 118 6 514 722 276 454 1.04e-17 88.6
Msa0172740 AT1G23020.7 27.358 212 118 6 514 722 273 451 1.27e-17 88.2
Msa0172740 AT1G01590.1 27.155 232 109 8 505 721 270 456 5.50e-17 86.3

Find 226 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAAGAGTTGCGAGAATTT+TGG 0.178663 1_4:+57906667 Msa0172740:CDS
CAAAGCTTTGATCTGTAATT+TGG 0.206644 1_4:-57906692 None:intergenic
AGGACAATTGGAAACGTATT+TGG 0.219648 1_4:+57908963 Msa0172740:CDS
AACAAGACTTGATGAGAAAT+TGG 0.224217 1_4:-57904978 None:intergenic
TACTTCGTATATAATATAAT+TGG 0.229273 1_4:+57905039 Msa0172740:five_prime_UTR
AATTATTGGTGGTTCGTTAA+AGG 0.240496 1_4:+57910025 Msa0172740:CDS
ACTATTTAGGTGATAGCTTT+TGG 0.241901 1_4:+57909878 Msa0172740:intron
AGACACCGAAACGGCGTTTC+TGG 0.250511 1_4:+57905440 Msa0172740:CDS
CCAAGCGAGCCTATTTCTAT+TGG 0.264084 1_4:+57911444 Msa0172740:CDS
GTGAGTTTCTTGAGGGGTTT+TGG 0.265957 1_4:-57910142 None:intergenic
TCTCTAAAAGCCCGTTTAAT+AGG 0.271417 1_4:-57908923 None:intergenic
GGTTCGTTTGAATGGTTTAA+AGG 0.272767 1_4:+57911482 Msa0172740:CDS
GAAAAGTAAAACAAATAATT+AGG 0.277845 1_4:+57905189 Msa0172740:five_prime_UTR
CGAACTAAGAAGGCTTTCTT+TGG 0.282783 1_4:+57911913 Msa0172740:CDS
TTATAAACATTACGCCAATT+TGG 0.292843 1_4:-57911689 None:intergenic
CTTGTTGTAAACATTTATTT+TGG 0.298293 1_4:+57904995 Msa0172740:five_prime_UTR
TCAATATATCCAAGGTTGTT+TGG 0.300863 1_4:-57908606 None:intergenic
TGTGGTCATGGTTGTGCTTA+TGG 0.307236 1_4:+57910066 Msa0172740:CDS
CTAACTTCTGGCTTAACATT+TGG 0.313513 1_4:-57908880 None:intergenic
TCGCAACTCTTCCTTTGTTA+TGG 0.316921 1_4:-57906658 None:intergenic
CAGATCAAAGCTTTGATTCA+AGG 0.323044 1_4:+57906700 Msa0172740:CDS
CCACTTTGGTCATCATTTGC+TGG 0.324385 1_4:-57911007 None:intergenic
GAGAGTAGATAGGATTGTTA+TGG 0.325622 1_4:-57904956 None:intergenic
AACCTTGGTTTCGTCGTAAT+AGG 0.334498 1_4:+57910110 Msa0172740:CDS
CTAAGAATTGATGGACCTTA+TGG 0.339430 1_4:+57911236 Msa0172740:CDS
ATGAAAGACCTGATAATTAT+TGG 0.340393 1_4:+57910011 Msa0172740:CDS
CTTTAGTAGGGACTAACTTC+TGG 0.342443 1_4:-57908892 None:intergenic
ACATTCGAACTTTGGGTGAT+TGG 0.346284 1_4:+57910818 Msa0172740:CDS
GTATTTGGATCATAGCTCTA+TGG 0.352268 1_4:+57908978 Msa0172740:CDS
GCGAGTAACCCAATAGAAAT+AGG 0.356360 1_4:-57911453 None:intergenic
CTTATTGGCCGAAGCACTTA+AGG 0.358195 1_4:-57908523 None:intergenic
ACGAACCACCAATAATTATC+AGG 0.358413 1_4:-57910019 None:intergenic
GAACATATACAATGACAAAA+AGG 0.358628 1_4:-57910195 None:intergenic
CAAGCGAGCCTATTTCTATT+GGG 0.361277 1_4:+57911445 Msa0172740:CDS
CAATATATCCAAGGTTGTTT+GGG 0.365860 1_4:-57908605 None:intergenic
ATAGGATTGTGCTCTTTAGT+AGG 0.366120 1_4:-57908905 None:intergenic
CATCAAAACGCTTCTCAACT+TGG 0.366463 1_4:-57905644 None:intergenic
TCCTTTACCTTAGCAAGAAA+TGG 0.371765 1_4:+57910239 Msa0172740:CDS
AAGCGTTCACATTCGAACTT+TGG 0.372800 1_4:+57910810 Msa0172740:CDS
TGCAATGCCAGTACATTTCC+CGG 0.373710 1_4:-57910577 None:intergenic
GAAGCGTCCGTCGTCGCTTT+CGG 0.373980 1_4:+57905476 Msa0172740:CDS
TCGCATCCGTATAGTATCAT+TGG 0.375602 1_4:-57910404 None:intergenic
CTTCGGCTTTCTGTGCTCTC+TGG 0.375928 1_4:-57905252 None:intergenic
ATAATAATATAGATGTATTA+CGG 0.381189 1_4:-57912016 None:intergenic
GCTTCAGCGGGCCGCTAAGC+GGG 0.384442 1_4:+57905286 Msa0172740:CDS
AAGAGCACAATCCTATTAAA+CGG 0.386167 1_4:+57908912 Msa0172740:CDS
GTTCGTTTGAATGGTTTAAA+GGG 0.386292 1_4:+57911483 Msa0172740:CDS
CTCTTTATGAAAATCAAACT+TGG 0.388509 1_4:-57911957 None:intergenic
CACCATACAATTTCTATCAT+AGG 0.391605 1_4:+57905082 Msa0172740:five_prime_UTR
CTTAGAAGAAGGAGGGGAGG+TGG 0.393904 1_4:+57911382 Msa0172740:CDS
ATATAGCTAGCTCCATTTGA+TGG 0.394907 1_4:+57912082 Msa0172740:three_prime_UTR
TACAGAAGAAGAAGTAAAAG+AGG 0.396567 1_4:+57908325 Msa0172740:CDS
AATGCTGTATAATAGAAATT+AGG 0.401049 1_4:+57912161 Msa0172740:three_prime_UTR
ACTAGTAAGAGAGTAGTAAT+TGG 0.404495 1_4:+57905154 Msa0172740:five_prime_UTR
TGAGAAATTGGAGAGTAGAT+AGG 0.404958 1_4:-57904966 None:intergenic
AGCGTTCACATTCGAACTTT+GGG 0.412327 1_4:+57910811 Msa0172740:CDS
AGAGTAGATAGGATTGTTAT+GGG 0.415771 1_4:-57904955 None:intergenic
GATTATTGCCTTAAGTGCTT+CGG 0.419075 1_4:+57908515 Msa0172740:intron
CTACTTCGTGCATTTAGATC+TGG 0.420635 1_4:+57910431 Msa0172740:CDS
TCTGTGGCGTGTAATAATCT+TGG 0.420991 1_4:-57909953 None:intergenic
GCGAGCAGGGTTCGTTTGAA+TGG 0.421609 1_4:+57911474 Msa0172740:CDS
CACTGGCTAAATCGAGTCTT+GGG 0.426185 1_4:-57905690 None:intergenic
CTATTGGGTTACTCGCGAGC+AGG 0.429028 1_4:+57911460 Msa0172740:CDS
CTCACATAACTACAGATAGT+AGG 0.430099 1_4:+57908849 Msa0172740:CDS
AAACGGCACGACGTTTGTAC+TGG 0.430573 1_4:-57909039 None:intergenic
AACGAGTCAAAGGAGTTTGC+TGG 0.435309 1_4:+57906588 Msa0172740:CDS
CTTAGTTCGCCAACCAATCC+AGG 0.435611 1_4:-57911899 None:intergenic
TAATAATATAGATGTATTAC+GGG 0.435694 1_4:-57912015 None:intergenic
AGGAGCTGATGTAATAGAAA+AGG 0.435812 1_4:-57910773 None:intergenic
TCTTGTGCTGGTGCTCCATA+AGG 0.436359 1_4:-57911251 None:intergenic
CTATTGTGTCACCACGGCTA+AGG 0.440837 1_4:+57909075 Msa0172740:CDS
ATGCCAAGGCTAAGAATTGA+TGG 0.442152 1_4:+57911227 Msa0172740:CDS
TGAGGTAGCGGAGAATGATA+AGG 0.445771 1_4:+57911514 Msa0172740:CDS
TTAGGCACATACCATTCAAA+TGG 0.446242 1_4:-57910670 None:intergenic
GGTCCAGCTCCTCCATGATA+AGG 0.448687 1_4:-57908584 None:intergenic
GCACACAGATTCTACGTACT+TGG 0.449033 1_4:+57905129 Msa0172740:five_prime_UTR
AGCTCACGGGTGGGCTTCAG+CGG 0.449072 1_4:+57905273 Msa0172740:CDS
GATGCTAAAGGCCCGCTTAG+CGG 0.450959 1_4:-57905297 None:intergenic
TAGGCACATACCATTCAAAT+GGG 0.451319 1_4:-57910669 None:intergenic
GCTTGCCAGAAACGCCGTTT+CGG 0.451321 1_4:-57905445 None:intergenic
TTTGGAATTGCAATTGGGGT+TGG 0.452710 1_4:+57909896 Msa0172740:CDS
CTGTGGCGTGTAATAATCTT+GGG 0.458512 1_4:-57909952 None:intergenic
ACCATTTCTTGCTAAGGTAA+AGG 0.460848 1_4:-57910240 None:intergenic
TCTTATACCATTTCTTGCTA+AGG 0.464360 1_4:-57910246 None:intergenic
CAGATATCTCCCCATTTGAA+TGG 0.464534 1_4:+57910659 Msa0172740:CDS
CTTCAAGGATGACGGTGAAA+TGG 0.466601 1_4:+57905359 Msa0172740:CDS
GCGGTTCCAATGATACTATA+CGG 0.467047 1_4:+57910398 Msa0172740:CDS
TAGGCTCGCTTGGTTGCAAA+AGG 0.468284 1_4:-57911434 None:intergenic
AAGGTTGATAGATCAAAATC+TGG 0.469714 1_4:+57905558 Msa0172740:CDS
TAAACTAAGACAGGTGTCTC+AGG 0.471090 1_4:+57905500 Msa0172740:CDS
GGGTTGGACCGGTGTGGTCA+TGG 0.471179 1_4:+57910054 Msa0172740:CDS
GGCTTCAGCGGGCCGCTAAG+CGG 0.473400 1_4:+57905285 Msa0172740:CDS
TGAAGCCCACCCGTGAGCTT+CGG 0.474667 1_4:-57905269 None:intergenic
TAGGATTGTGCTCTTTAGTA+GGG 0.477941 1_4:-57908904 None:intergenic
CCAATAGAAATAGGCTCGCT+TGG 0.478144 1_4:-57911444 None:intergenic
CTTGGTAGGCTTGATTTGCC+TGG 0.478179 1_4:-57911052 None:intergenic
TGCCCTTATCATGGAGGAGC+TGG 0.478324 1_4:+57908581 Msa0172740:CDS
GGTCCATCAATTCTTAGCCT+TGG 0.479139 1_4:-57911230 None:intergenic
AAACAACCTTGGATATATTG+AGG 0.479313 1_4:+57908608 Msa0172740:CDS
TACGAAGTTCTTCTTCTAGT+AGG 0.479588 1_4:+57911284 Msa0172740:CDS
GATTGGTTGGCGAACTAAGA+AGG 0.482446 1_4:+57911903 Msa0172740:CDS
CTAAGAGCTGATATGCTACC+AGG 0.483278 1_4:+57911034 Msa0172740:CDS
AGAGCACAATCCTATTAAAC+GGG 0.483797 1_4:+57908913 Msa0172740:CDS
GAACAAAAGTGGAAGCTTCA+AGG 0.484269 1_4:+57905344 Msa0172740:CDS
TGCCTATGATAGAAATTGTA+TGG 0.487564 1_4:-57905084 None:intergenic
AATCCAGGTTGCAGTGTACC+CGG 0.489896 1_4:+57910558 Msa0172740:intron
AAGTTGATATTGTCATCAAA+TGG 0.490240 1_4:-57909202 None:intergenic
AAGAGAGTAGTAATTGGCTT+GGG 0.493053 1_4:+57905160 Msa0172740:five_prime_UTR
GTCCAGCTCCTCCATGATAA+GGG 0.494723 1_4:-57908583 None:intergenic
GCACTGGCTAAATCGAGTCT+TGG 0.494740 1_4:-57905691 None:intergenic
AAAACCAGTGAGTTTCTTGA+GGG 0.498737 1_4:-57910149 None:intergenic
GGAATATGCTGCCCTTATCA+TGG 0.499572 1_4:+57908572 Msa0172740:CDS
TAAGAGAGTAGTAATTGGCT+TGG 0.501598 1_4:+57905159 Msa0172740:five_prime_UTR
AACCGAAGCAAGAACAAAAG+TGG 0.503450 1_4:+57905333 Msa0172740:CDS
TTACTGTGGAGCGCCTGGAT+TGG 0.503829 1_4:+57911886 Msa0172740:CDS
TTACAACTCCATCCATCAAA+TGG 0.506903 1_4:-57912094 None:intergenic
GTGATGGTGTTTCTACATAC+AGG 0.507741 1_4:-57909142 None:intergenic
CAAGAAATGGTATAAGAAAA+CGG 0.507908 1_4:+57910252 Msa0172740:CDS
TGGAACCACCATTCCAAGCC+TGG 0.508118 1_4:-57909182 None:intergenic
CTTAGGAGTAGGACCAGGCT+TGG 0.508877 1_4:+57909169 Msa0172740:CDS
GTTCTTCTTCTAGTAGGACT+AGG 0.509693 1_4:+57911290 Msa0172740:CDS
AGAAGACTTAGAAGAAGGAG+GGG 0.511195 1_4:+57911376 Msa0172740:CDS
AGTGTACCCGGGAAATGTAC+TGG 0.514825 1_4:+57910570 Msa0172740:CDS
CACAGAAAGCCGAAGCTCAC+GGG 0.516919 1_4:+57905260 Msa0172740:CDS
GGTGCTGCTCGTGCTCTACA+AGG 0.517296 1_4:+57905579 Msa0172740:CDS
TATACCTCGACGACGTGCTA+AGG 0.520297 1_4:-57906625 None:intergenic
CAAGAAGAAGACTTAGAAGA+AGG 0.523128 1_4:+57911371 Msa0172740:CDS
ATCAAAACGCTTCTCAACTT+GGG 0.524127 1_4:-57905643 None:intergenic
GAAACACCATCACTTGGCTT+AGG 0.524639 1_4:+57909152 Msa0172740:CDS
AGACTTAGAAGAAGGAGGGG+AGG 0.525285 1_4:+57911379 Msa0172740:CDS
GACCACACCGGTCCAACCCT+CGG 0.525744 1_4:-57910050 None:intergenic
GGAGCTGATGTAATAGAAAA+GGG 0.527463 1_4:-57910772 None:intergenic
AAATAAAATGTAGGATGCCA+AGG 0.528211 1_4:+57911213 Msa0172740:intron
GCTCACGGGTGGGCTTCAGC+GGG 0.534753 1_4:+57905274 Msa0172740:CDS
GTAAAACAAATAATTAGGAA+TGG 0.535067 1_4:+57905194 Msa0172740:exon
TGCACAAGTGTGTATGAAGA+AGG 0.535781 1_4:+57911563 Msa0172740:CDS
TATTGTGTCACCACGGCTAA+GGG 0.536195 1_4:+57909076 Msa0172740:CDS
GCACAGAAAGCCGAAGCTCA+CGG 0.538948 1_4:+57905259 Msa0172740:CDS
AGGGGTGATGAATGAGGTAG+CGG 0.541100 1_4:+57911502 Msa0172740:CDS
TGATTGGACGTCACAACTGA+AGG 0.541866 1_4:+57910834 Msa0172740:CDS
GTTATGTGAGCTGATTGTGC+TGG 0.544038 1_4:-57908836 None:intergenic
AGCTAGCTCCATTTGATGGA+TGG 0.545007 1_4:+57912086 Msa0172740:three_prime_UTR
CATGTTAAACTTGAGCGTCT+CGG 0.548837 1_4:-57909104 None:intergenic
TTATGTGTAGCTGTACAACT+TGG 0.549622 1_4:+57908793 Msa0172740:intron
TCGTTAAAGGAACCGAGGGT+TGG 0.549825 1_4:+57910038 Msa0172740:CDS
TATTGGGTTACTCGCGAGCA+GGG 0.550595 1_4:+57911461 Msa0172740:CDS
ATAGCCCATGACATGGAAAA+CGG 0.551117 1_4:-57909056 None:intergenic
AAACGGCGTTTCTGGCAAGC+CGG 0.551405 1_4:+57905448 Msa0172740:CDS
ACATACAGGCAACAAGATCA+AGG 0.554086 1_4:-57909128 None:intergenic
TACAAACCTCAATATATCCA+AGG 0.555649 1_4:-57908614 None:intergenic
TTCGTTTGAATGGTTTAAAG+GGG 0.557889 1_4:+57911484 Msa0172740:CDS
TCACATAACTACAGATAGTA+GGG 0.557927 1_4:+57908850 Msa0172740:CDS
TGTGGAGCGCCTGGATTGGT+TGG 0.557961 1_4:+57911890 Msa0172740:CDS
AAAGGAACCGAGGGTTGGAC+CGG 0.558348 1_4:+57910043 Msa0172740:CDS
TAAAACCAGTGAGTTTCTTG+AGG 0.558629 1_4:-57910150 None:intergenic
CAGCTCTTAGAAGACCACTT+TGG 0.560760 1_4:-57911021 None:intergenic
CCATCACTTGGCTTAGGAGT+AGG 0.564213 1_4:+57909158 Msa0172740:CDS
TAGGACCAGGCTTGGAATGG+TGG 0.564316 1_4:+57909177 Msa0172740:CDS
AGGGTGGACAAGAATGCTGA+TGG 0.564553 1_4:+57908296 Msa0172740:intron
AAGAAGACTTAGAAGAAGGA+GGG 0.564813 1_4:+57911375 Msa0172740:CDS
GTTTCCGTTCAGAATATTCG+CGG 0.564937 1_4:+57905414 Msa0172740:CDS
ATTAGGAATGAACGAGTCAA+AGG 0.565200 1_4:+57906578 Msa0172740:intron
AAAGACCTGATAATTATTGG+TGG 0.565609 1_4:+57910014 Msa0172740:CDS
CTTCTAGTAGGACTAGGAAT+CGG 0.567489 1_4:+57911296 Msa0172740:CDS
GAGCTGGACCCAAACAACCT+TGG 0.567715 1_4:+57908597 Msa0172740:CDS
TGGATGTAGTTTCAGAGACA+AGG 0.568052 1_4:+57911645 Msa0172740:CDS
ACATGGACATACCTATGCAC+TGG 0.571320 1_4:-57905707 None:intergenic
TATTATATACGAAGTATATG+TGG 0.571701 1_4:-57905032 None:intergenic
AGAAAGCCGAAGCTCACGGG+TGG 0.572651 1_4:+57905263 Msa0172740:CDS
AAACCCCTCAAGAAACTCAC+TGG 0.573744 1_4:+57910145 Msa0172740:CDS
CAAATCTGTGAGGATACTAA+AGG 0.573820 1_4:+57910457 Msa0172740:CDS
GCTTTCGGCTAAACTAAGAC+AGG 0.576796 1_4:+57905491 Msa0172740:CDS
GTTTAAAGGGGTGATGAATG+AGG 0.577520 1_4:+57911496 Msa0172740:CDS
GTAGCGGAGAATGATAAGGA+AGG 0.577707 1_4:+57911518 Msa0172740:CDS
GAGTAGGACCAGGCTTGGAA+TGG 0.584321 1_4:+57909174 Msa0172740:CDS
GAAGAAGACTTAGAAGAAGG+AGG 0.587618 1_4:+57911374 Msa0172740:CDS
TTTGATGAGTTGGCTGTGGA+GGG 0.587990 1_4:+57905660 Msa0172740:CDS
CTTGGCTTAGGAGTAGGACC+AGG 0.588624 1_4:+57909164 Msa0172740:CDS
TCGCGGTGGAGACACCGAAA+CGG 0.593743 1_4:+57905431 Msa0172740:CDS
ACGCTTATATAGTCATCTCC+AGG 0.593990 1_4:-57910793 None:intergenic
ACGACGGACGCTTCTCAAGC+CGG 0.596085 1_4:-57905467 None:intergenic
GGGTTCATATTCTTCATCTG+TGG 0.596212 1_4:-57909969 None:intergenic
TGTATGAAGAAGGCGACGCT+CGG 0.602286 1_4:+57911573 Msa0172740:CDS
AGTTTAGCCGAAAGCGACGA+CGG 0.602465 1_4:-57905483 None:intergenic
AGTGGAAGCTTCAAGGATGA+CGG 0.607876 1_4:+57905351 Msa0172740:CDS
CAAGGATGACGGTGAAATGG+TGG 0.608567 1_4:+57905362 Msa0172740:CDS
CGAGACGCTCAAGTTTAACA+TGG 0.609198 1_4:+57909105 Msa0172740:CDS
ATCCAGGTTGCAGTGTACCC+GGG 0.609923 1_4:+57910559 Msa0172740:intron
TGGTTCGTTAAAGGAACCGA+GGG 0.611360 1_4:+57910034 Msa0172740:CDS
CAAGGGTTTAAGTACACTAG+TGG 0.613267 1_4:+57910613 Msa0172740:CDS
AGTAGTTGCTTCCATAACAA+AGG 0.614552 1_4:+57906647 Msa0172740:CDS
AAGAGAGCAAACATGAGTCA+TGG 0.614927 1_4:+57905223 Msa0172740:CDS
CTCGGCACCACCCTTAGCCG+TGG 0.616912 1_4:-57909086 None:intergenic
AAAACGTTGGAAGTGAAGGT+TGG 0.620114 1_4:+57905619 Msa0172740:CDS
TCTTTGAGTATGCTAATCAA+AGG 0.621357 1_4:-57911326 None:intergenic
TATGTAGAAACACCATCACT+TGG 0.622762 1_4:+57909146 Msa0172740:CDS
TGACACAATAGCCCATGACA+TGG 0.625098 1_4:-57909063 None:intergenic
ACTCGATTTAGCCAGTGCAT+AGG 0.626507 1_4:+57905696 Msa0172740:CDS
CTAGTGTACTTAAACCCTTG+TGG 0.628502 1_4:-57910610 None:intergenic
GAGCAAACATGAGTCATGGT+CGG 0.629365 1_4:+57905227 Msa0172740:CDS
GCAATGCCAGTACATTTCCC+GGG 0.633573 1_4:-57910576 None:intergenic
GATTGGACGTCACAACTGAA+GGG 0.637531 1_4:+57910835 Msa0172740:CDS
GAAAGCCGAAGCTCACGGGT+GGG 0.641161 1_4:+57905264 Msa0172740:CDS
TTGCATGTGTCTAAACCACA+AGG 0.642211 1_4:+57910595 Msa0172740:CDS
AAAATTACAAGAACGAGCAG+AGG 0.645722 1_4:+57908551 Msa0172740:CDS
GTGGTTCGTTAAAGGAACCG+AGG 0.646692 1_4:+57910033 Msa0172740:CDS
TGTGTCACCACGGCTAAGGG+TGG 0.647115 1_4:+57909079 Msa0172740:CDS
GGATGTAGTTTCAGAGACAA+GGG 0.648790 1_4:+57911646 Msa0172740:CDS
AGCCTATTACGACGAAACCA+AGG 0.648944 1_4:-57910112 None:intergenic
ATAGACATGGATGTATCTTG+CGG 0.650881 1_4:+57910379 Msa0172740:intron
CCTACTCCTAAGCCAAGTGA+TGG 0.654089 1_4:-57909158 None:intergenic
AACCGAGGGTTGGACCGGTG+TGG 0.658523 1_4:+57910048 Msa0172740:CDS
CCAGCAAATGATGACCAAAG+TGG 0.662394 1_4:+57911007 Msa0172740:CDS
GATGCCTTAGCACGTCGTCG+AGG 0.676702 1_4:+57906621 Msa0172740:CDS
TCCGTTCAGAATATTCGCGG+TGG 0.679005 1_4:+57905417 Msa0172740:CDS
CAGGCAAATCAAGCCTACCA+AGG 0.679852 1_4:+57911053 Msa0172740:CDS
AAACCAGTGAGTTTCTTGAG+GGG 0.680412 1_4:-57910148 None:intergenic
TCCACCGCGAATATTCTGAA+CGG 0.684589 1_4:-57905418 None:intergenic
TGAAATGGTGGAGATAACGT+TGG 0.685098 1_4:+57905374 Msa0172740:CDS
TGACAATATCAACTTTCACA+AGG 0.691296 1_4:+57909210 Msa0172740:CDS
TGCATGTGTCTAAACCACAA+GGG 0.711409 1_4:+57910596 Msa0172740:CDS
AAGCACAACCATGACCACAC+CGG 0.711632 1_4:-57910062 None:intergenic
AGGCACATACCATTCAAATG+GGG 0.712031 1_4:-57910668 None:intergenic
CATGGGCTATTGTGTCACCA+CGG 0.732084 1_4:+57909069 Msa0172740:CDS
ATATGCTGCCCTTATCATGG+AGG 0.734728 1_4:+57908575 Msa0172740:CDS
GATCTGGCTACAAATCTGTG+AGG 0.758785 1_4:+57910447 Msa0172740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTGCATATAAA+TGG + chr1_4:57905769-57905788 Msa0172740:intron 10.0%
!!! ATATAATAAACTTTGTTTAA+GGG - chr1_4:57907837-57907856 None:intergenic 10.0%
!! TTAAACAAAGTTTATTATAT+GGG + chr1_4:57907837-57907856 Msa0172740:intron 10.0%
!!! TTTAATGTTAATTTGTTTAA+TGG - chr1_4:57908419-57908438 None:intergenic 10.0%
!!! TAACATTAAATTTTCTAATA+TGG + chr1_4:57908429-57908448 Msa0172740:intron 10.0%
!! CAAATTAAAATATAATTTAC+TGG - chr1_4:57908719-57908738 None:intergenic 10.0%
!!! AAAAAAATCTTATTGTTTTA+GGG - chr1_4:57909247-57909266 None:intergenic 10.0%
!!! AAAAAAAATCTTATTGTTTT+AGG - chr1_4:57909248-57909267 None:intergenic 10.0%
!!! TAAAATAACATATTAGATTT+TGG + chr1_4:57909775-57909794 Msa0172740:intron 10.0%
!! TGTATGTTATATTATAAATT+TGG - chr1_4:57911812-57911831 None:intergenic 10.0%
!! ATAATAATATAGATGTATTA+CGG - chr1_4:57912019-57912038 None:intergenic 10.0%
!! TACTTCGTATATAATATAAT+TGG + chr1_4:57905039-57905058 Msa0172740:five_prime_UTR 15.0%
!! GAAAAGTAAAACAAATAATT+AGG + chr1_4:57905189-57905208 Msa0172740:five_prime_UTR 15.0%
!!! TAATATTAGTTTTTTTTTGG+TGG - chr1_4:57906529-57906548 None:intergenic 15.0%
!! TATTATGAGATTTATATGAA+TGG + chr1_4:57907216-57907235 Msa0172740:intron 15.0%
!! TAATATAGAAATATTGTCAT+GGG - chr1_4:57907411-57907430 None:intergenic 15.0%
!!! TTATTTTAACAAATGTCTAA+AGG + chr1_4:57907432-57907451 Msa0172740:intron 15.0%
!!! AATTTTTTATTTAGTTCCAT+AGG + chr1_4:57907711-57907730 Msa0172740:intron 15.0%
!!! TTTTTTTTGACATGTAATAT+TGG + chr1_4:57907766-57907785 Msa0172740:intron 15.0%
!! TAATATTGGAATATTCTTTA+TGG + chr1_4:57907780-57907799 Msa0172740:intron 15.0%
!!! CATATAATAAACTTTGTTTA+AGG - chr1_4:57907838-57907857 None:intergenic 15.0%
!! CTTAAACAAAGTTTATTATA+TGG + chr1_4:57907836-57907855 Msa0172740:intron 15.0%
!! ATCAACTAATTGTAAAAAAA+TGG + chr1_4:57908093-57908112 Msa0172740:intron 15.0%
!!! TATAAACTTGACAATTTTTT+AGG + chr1_4:57909447-57909466 Msa0172740:intron 15.0%
!! AAATAATTCATATACATCAT+CGG - chr1_4:57911139-57911158 None:intergenic 15.0%
!!! CTCAATTTTAAATAAAATGT+AGG + chr1_4:57911204-57911223 Msa0172740:intron 15.0%
!! TAATAATATAGATGTATTAC+GGG - chr1_4:57912018-57912037 None:intergenic 15.0%
!!! CTTGTTGTAAACATTTATTT+TGG + chr1_4:57904995-57905014 Msa0172740:five_prime_UTR 20.0%
!! TATTATATACGAAGTATATG+TGG - chr1_4:57905035-57905054 None:intergenic 20.0%
!! GTAAAACAAATAATTAGGAA+TGG + chr1_4:57905194-57905213 Msa0172740:exon 20.0%
!! GGTCATTAAGTTAAAAAAAA+TGG + chr1_4:57905810-57905829 Msa0172740:intron 20.0%
!! TGCTAAAAAAAACATATGTA+TGG + chr1_4:57905845-57905864 Msa0172740:intron 20.0%
!! ATATGTATGGTCTATTAATT+AGG + chr1_4:57905858-57905877 Msa0172740:intron 20.0%
!! TCAAGACATTTCATTTATAA+TGG + chr1_4:57905931-57905950 Msa0172740:intron 20.0%
!! AGACTTTAATTGAGATAAAA+TGG - chr1_4:57906106-57906125 None:intergenic 20.0%
!! CAAGAAAAATGTTACTATTT+AGG + chr1_4:57906237-57906256 Msa0172740:intron 20.0%
!! AATGGAGATGATATTATTAT+TGG + chr1_4:57907234-57907253 Msa0172740:intron 20.0%
!! ATGGAGATGATATTATTATT+GGG + chr1_4:57907235-57907254 Msa0172740:intron 20.0%
!! CTAATATAGAAATATTGTCA+TGG - chr1_4:57907412-57907431 None:intergenic 20.0%
!! TGTATACAATATGTAACATT+AGG - chr1_4:57907594-57907613 None:intergenic 20.0%
!!! ACACACACTTTATTTTTAAT+CGG - chr1_4:57907682-57907701 None:intergenic 20.0%
!! ACTAATTGTAAAAAAATGGT+TGG + chr1_4:57908097-57908116 Msa0172740:intron 20.0%
!!! TAATTTGTTTAATGGTCAAT+TGG - chr1_4:57908411-57908430 None:intergenic 20.0%
!!! TTGTAATTTTGATAGCTTAT+TGG - chr1_4:57908541-57908560 None:intergenic 20.0%
!! AAGAATTTACAATCGAATTT+AGG - chr1_4:57909394-57909413 None:intergenic 20.0%
!!! AGAGCTTATTTTACTTTATT+AGG + chr1_4:57909517-57909536 Msa0172740:intron 20.0%
!! TAGAAATATGACACAAATTA+AGG + chr1_4:57909634-57909653 Msa0172740:intron 20.0%
!!! TATGTTCTTTTTATCATTCA+TGG + chr1_4:57910211-57910230 Msa0172740:CDS 20.0%
!! AGATGAAAAAACAACTAAAA+TGG - chr1_4:57910313-57910332 None:intergenic 20.0%
!! TTTACAAAATTGAAGATGAA+GGG - chr1_4:57910509-57910528 None:intergenic 20.0%
!! ATTTACAAAATTGAAGATGA+AGG - chr1_4:57910510-57910529 None:intergenic 20.0%
!! TATTCATTGAAAAAAAATCC+AGG + chr1_4:57910543-57910562 Msa0172740:intron 20.0%
!!! AAGATTTTGGAACTTAAATT+AGG - chr1_4:57910691-57910710 None:intergenic 20.0%
!!! CAAGTATAAGAATAAGATTT+TGG - chr1_4:57910704-57910723 None:intergenic 20.0%
!!! GAGCTATGTTATTTTAAATT+TGG + chr1_4:57910899-57910918 Msa0172740:intron 20.0%
!!! TATTTTTCTATGAAATCGAT+AGG + chr1_4:57911154-57911173 Msa0172740:intron 20.0%
!!! GATTTTACTCTTAATTAGTT+TGG + chr1_4:57911756-57911775 Msa0172740:intron 20.0%
!! AATGCTGTATAATAGAAATT+AGG + chr1_4:57912161-57912180 Msa0172740:three_prime_UTR 20.0%
! AAGTTTATGACAAAAAACGT+TGG + chr1_4:57905606-57905625 Msa0172740:CDS 25.0%
!! TGGAAGTTCATTTGAAATAA+TGG + chr1_4:57905789-57905808 Msa0172740:intron 25.0%
! AATTAACACTGTTAGGATAT+AGG - chr1_4:57907093-57907112 None:intergenic 25.0%
! ATCAATCAATTAACACTGTT+AGG - chr1_4:57907100-57907119 None:intergenic 25.0%
! TGAACATGTTAATTGTTACA+AGG + chr1_4:57907119-57907138 Msa0172740:intron 25.0%
!!! AATGTGCATTTAATTTGCAA+TGG - chr1_4:57907151-57907170 None:intergenic 25.0%
!!! TAACATTGAATAAGTGTTGA+TGG + chr1_4:57907616-57907635 Msa0172740:intron 25.0%
! ATAATTCTTTCGTTCTCTAT+AGG - chr1_4:57907646-57907665 None:intergenic 25.0%
! ATTGGAATATTCTTTATGGT+TGG + chr1_4:57907784-57907803 Msa0172740:intron 25.0%
! ATCTCATCATATCTCATTAA+TGG - chr1_4:57907935-57907954 None:intergenic 25.0%
!! TTGTAAAAAAATGGTTGGTT+AGG + chr1_4:57908102-57908121 Msa0172740:intron 25.0%
!!! AGTACAGTATTTTTGACATT+AGG - chr1_4:57908228-57908247 None:intergenic 25.0%
!!! TAGAGAACTAGCTTATTTTA+TGG + chr1_4:57908940-57908959 Msa0172740:CDS 25.0%
!!! AAGTTGATATTGTCATCAAA+TGG - chr1_4:57909205-57909224 None:intergenic 25.0%
!! ATTTTACTTTATTAGGTCAC+TGG + chr1_4:57909524-57909543 Msa0172740:intron 25.0%
!! TTCTTTTCCTCTTACTATTT+AGG + chr1_4:57909865-57909884 Msa0172740:intron 25.0%
! ATGAAAGACCTGATAATTAT+TGG + chr1_4:57910011-57910030 Msa0172740:CDS 25.0%
! GAACATATACAATGACAAAA+AGG - chr1_4:57910198-57910217 None:intergenic 25.0%
! CAAGAAATGGTATAAGAAAA+CGG + chr1_4:57910252-57910271 Msa0172740:CDS 25.0%
! AAATGGAACAAAAAACACAT+TGG - chr1_4:57910296-57910315 None:intergenic 25.0%
! TTATGTGACATATATAGACA+TGG + chr1_4:57910366-57910385 Msa0172740:intron 25.0%
! TTTGATATTGTTCATGATCA+TGG + chr1_4:57910942-57910961 Msa0172740:intron 25.0%
! ATTAATTACATTCATCGTCA+TGG + chr1_4:57910966-57910985 Msa0172740:intron 25.0%
!!! TATAAACCTTTTTGATGATC+TGG + chr1_4:57911076-57911095 Msa0172740:intron 25.0%
! ACACATTGAATCAATCATAA+TGG - chr1_4:57911102-57911121 None:intergenic 25.0%
! TTATAAACATTACGCCAATT+TGG - chr1_4:57911692-57911711 None:intergenic 25.0%
!!! ACTTACCAACTTTTTTTTCA+GGG - chr1_4:57911733-57911752 None:intergenic 25.0%
!!! TACTTACCAACTTTTTTTTC+AGG - chr1_4:57911734-57911753 None:intergenic 25.0%
!!! GAAAAAAAAGTTGGTAAGTA+TGG + chr1_4:57911734-57911753 Msa0172740:intron 25.0%
! ATAACATACATTGTGTTCTT+AGG + chr1_4:57911822-57911841 Msa0172740:intron 25.0%
! ATAACATACATTGTGTTCTT+AGG + chr1_4:57911822-57911841 Msa0172740:intron 25.0%
! CTCTTTATGAAAATCAAACT+TGG - chr1_4:57911960-57911979 None:intergenic 25.0%
!!! TGAATCATTTTTTGTTGTAG+AGG + chr1_4:57912054-57912073 Msa0172740:three_prime_UTR 25.0%
AGAGTAGATAGGATTGTTAT+GGG - chr1_4:57904958-57904977 None:intergenic 30.0%
AACAAGACTTGATGAGAAAT+TGG - chr1_4:57904981-57905000 None:intergenic 30.0%
CACCATACAATTTCTATCAT+AGG + chr1_4:57905082-57905101 Msa0172740:five_prime_UTR 30.0%
TGCCTATGATAGAAATTGTA+TGG - chr1_4:57905087-57905106 None:intergenic 30.0%
ACTAGTAAGAGAGTAGTAAT+TGG + chr1_4:57905154-57905173 Msa0172740:five_prime_UTR 30.0%
!! AAGGTTGATAGATCAAAATC+TGG + chr1_4:57905558-57905577 Msa0172740:CDS 30.0%
ATGAAGCATAGACTATAACA+TGG - chr1_4:57905727-57905746 None:intergenic 30.0%
GTATGGTCTATTAATTAGGA+AGG + chr1_4:57905862-57905881 Msa0172740:intron 30.0%
TGAAATGTCTTGAACTCTTA+TGG - chr1_4:57905924-57905943 None:intergenic 30.0%
ATTTAGGCACGTAACAAATA+AGG + chr1_4:57906253-57906272 Msa0172740:intron 30.0%
TTTAGGCACGTAACAAATAA+GGG + chr1_4:57906254-57906273 Msa0172740:intron 30.0%
CGTAACAAATAAGGGTTAAA+TGG + chr1_4:57906262-57906281 Msa0172740:intron 30.0%
! CAAAGCTTTGATCTGTAATT+TGG - chr1_4:57906695-57906714 None:intergenic 30.0%
TAAAGCAAGCAAAAACAAGA+AGG + chr1_4:57908051-57908070 Msa0172740:intron 30.0%
AAAGCAAGCAAAAACAAGAA+GGG + chr1_4:57908052-57908071 Msa0172740:intron 30.0%
TACAGAAGAAGAAGTAAAAG+AGG + chr1_4:57908325-57908344 Msa0172740:CDS 30.0%
ACTACTTATTACTAAGTGAG+TGG + chr1_4:57908385-57908404 Msa0172740:intron 30.0%
GTTTATTTACAAGACACTTG+TGG + chr1_4:57908458-57908477 Msa0172740:intron 30.0%
CAATATATCCAAGGTTGTTT+GGG - chr1_4:57908608-57908627 None:intergenic 30.0%
TCAATATATCCAAGGTTGTT+TGG - chr1_4:57908609-57908628 None:intergenic 30.0%
AAACAACCTTGGATATATTG+AGG + chr1_4:57908608-57908627 Msa0172740:CDS 30.0%
TACAAACCTCAATATATCCA+AGG - chr1_4:57908617-57908636 None:intergenic 30.0%
!! TAAGTTGATCAGCTAGAAAA+TGG + chr1_4:57908657-57908676 Msa0172740:intron 30.0%
TCACATAACTACAGATAGTA+GGG + chr1_4:57908850-57908869 Msa0172740:CDS 30.0%
! AAGAGCACAATCCTATTAAA+CGG + chr1_4:57908912-57908931 Msa0172740:CDS 30.0%
!!! AGAACTAGCTTATTTTATGG+AGG + chr1_4:57908943-57908962 Msa0172740:CDS 30.0%
!!! CTTATTTTATGGAGGACAAT+TGG + chr1_4:57908951-57908970 Msa0172740:CDS 30.0%
TGACAATATCAACTTTCACA+AGG + chr1_4:57909210-57909229 Msa0172740:CDS 30.0%
AATCTAAGTCATAATGTGAG+TGG - chr1_4:57909351-57909370 None:intergenic 30.0%
GAAGTCAATGATTCTTTATG+AGG + chr1_4:57909417-57909436 Msa0172740:intron 30.0%
GTATATTGGAGAAAAGTTCA+AGG + chr1_4:57909601-57909620 Msa0172740:intron 30.0%
! TTAAGGAAGTGTAAACAGAT+TGG + chr1_4:57909651-57909670 Msa0172740:intron 30.0%
! ACTATTTAGGTGATAGCTTT+TGG + chr1_4:57909878-57909897 Msa0172740:intron 30.0%
!!! ATAGCTTTTGGAATTGCAAT+TGG + chr1_4:57909890-57909909 Msa0172740:CDS 30.0%
!!! TAGCTTTTGGAATTGCAATT+GGG + chr1_4:57909891-57909910 Msa0172740:CDS 30.0%
TCTCCAAAAAACTGTTTCAT+GGG - chr1_4:57909992-57910011 None:intergenic 30.0%
ATCTCCAAAAAACTGTTTCA+TGG - chr1_4:57909993-57910012 None:intergenic 30.0%
AAAGACCTGATAATTATTGG+TGG + chr1_4:57910014-57910033 Msa0172740:CDS 30.0%
! AATTATTGGTGGTTCGTTAA+AGG + chr1_4:57910025-57910044 Msa0172740:CDS 30.0%
!!! TCACTGGTTTTAATGCATTT+TGG + chr1_4:57910161-57910180 Msa0172740:CDS 30.0%
TCTTATACCATTTCTTGCTA+AGG - chr1_4:57910249-57910268 None:intergenic 30.0%
AAAAAGGTTTATACCTTGGT+AGG - chr1_4:57911069-57911088 None:intergenic 30.0%
CATCAAAAAGGTTTATACCT+TGG - chr1_4:57911073-57911092 None:intergenic 30.0%
AAATAAAATGTAGGATGCCA+AGG + chr1_4:57911213-57911232 Msa0172740:intron 30.0%
TCTTTGAGTATGCTAATCAA+AGG - chr1_4:57911329-57911348 None:intergenic 30.0%
GTTCGTTTGAATGGTTTAAA+GGG + chr1_4:57911483-57911502 Msa0172740:CDS 30.0%
TTCGTTTGAATGGTTTAAAG+GGG + chr1_4:57911484-57911503 Msa0172740:CDS 30.0%
AAACACCCTGAAAAAAAAGT+TGG + chr1_4:57911725-57911744 Msa0172740:CDS 30.0%
!!! TTCTTAGGTGTTTTTTACTG+TGG + chr1_4:57911872-57911891 Msa0172740:intron 30.0%
!! TTGGACTTTTCAAGAAAAAC+TGG + chr1_4:57911932-57911951 Msa0172740:CDS 30.0%
!!! CTTCACTTTTTGAGTTTGAT+TGG + chr1_4:57912138-57912157 Msa0172740:three_prime_UTR 30.0%
GAGAGTAGATAGGATTGTTA+TGG - chr1_4:57904959-57904978 None:intergenic 35.0%
TGAGAAATTGGAGAGTAGAT+AGG - chr1_4:57904969-57904988 None:intergenic 35.0%
TAAGAGAGTAGTAATTGGCT+TGG + chr1_4:57905159-57905178 Msa0172740:five_prime_UTR 35.0%
! AAGAGAGTAGTAATTGGCTT+GGG + chr1_4:57905160-57905179 Msa0172740:five_prime_UTR 35.0%
!! TTCCACTTTTGTTCTTGCTT+CGG - chr1_4:57905338-57905357 None:intergenic 35.0%
!!! GTCTTTTAAGGCGTTTGATA+AGG + chr1_4:57905539-57905558 Msa0172740:CDS 35.0%
ACAAAAAACGTTGGAAGTGA+AGG + chr1_4:57905615-57905634 Msa0172740:CDS 35.0%
ATCAAAACGCTTCTCAACTT+GGG - chr1_4:57905646-57905665 None:intergenic 35.0%
TCTATGCACTACAACGTATA+TGG + chr1_4:57906182-57906201 Msa0172740:intron 35.0%
GGGTGTAAATGACAATGATT+AGG + chr1_4:57906561-57906580 Msa0172740:intron 35.0%
ATTAGGAATGAACGAGTCAA+AGG + chr1_4:57906578-57906597 Msa0172740:intron 35.0%
AGTAGTTGCTTCCATAACAA+AGG + chr1_4:57906647-57906666 Msa0172740:CDS 35.0%
! CAGATCAAAGCTTTGATTCA+AGG + chr1_4:57906700-57906719 Msa0172740:CDS 35.0%
!!! TCAAGGCTTCAAACCTTTTT+TGG + chr1_4:57906717-57906736 Msa0172740:CDS 35.0%
GTCTTCTTACATGCCAAAAA+AGG - chr1_4:57906733-57906752 None:intergenic 35.0%
CTGACAAGTGACAACTTAAA+TGG - chr1_4:57906863-57906882 None:intergenic 35.0%
TTGAATTATGCAACTGAGTG+CGG - chr1_4:57907062-57907081 None:intergenic 35.0%
CTGTTAGGATATAGGAAACA+AGG - chr1_4:57907085-57907104 None:intergenic 35.0%
!! CATTGAATAAGTGTTGATGG+TGG + chr1_4:57907619-57907638 Msa0172740:intron 35.0%
AATTCCAATATTCACCAGCA+GGG - chr1_4:57907744-57907763 None:intergenic 35.0%
AAATTCCAATATTCACCAGC+AGG - chr1_4:57907745-57907764 None:intergenic 35.0%
GATTATTGCCTTAAGTGCTT+CGG + chr1_4:57908515-57908534 Msa0172740:intron 35.0%
AAAATTACAAGAACGAGCAG+AGG + chr1_4:57908551-57908570 Msa0172740:CDS 35.0%
!!! TTACTGGCTCAATTTTGATG+AGG - chr1_4:57908703-57908722 None:intergenic 35.0%
TTATGTGTAGCTGTACAACT+TGG + chr1_4:57908793-57908812 Msa0172740:intron 35.0%
CTCACATAACTACAGATAGT+AGG + chr1_4:57908849-57908868 Msa0172740:CDS 35.0%
!! CTAACTTCTGGCTTAACATT+TGG - chr1_4:57908883-57908902 None:intergenic 35.0%
TAGGATTGTGCTCTTTAGTA+GGG - chr1_4:57908907-57908926 None:intergenic 35.0%
ATAGGATTGTGCTCTTTAGT+AGG - chr1_4:57908908-57908927 None:intergenic 35.0%
AGAGCACAATCCTATTAAAC+GGG + chr1_4:57908913-57908932 Msa0172740:CDS 35.0%
! TCTCTAAAAGCCCGTTTAAT+AGG - chr1_4:57908926-57908945 None:intergenic 35.0%
AGGACAATTGGAAACGTATT+TGG + chr1_4:57908963-57908982 Msa0172740:CDS 35.0%
! GTATTTGGATCATAGCTCTA+TGG + chr1_4:57908978-57908997 Msa0172740:CDS 35.0%
TATGTAGAAACACCATCACT+TGG + chr1_4:57909146-57909165 Msa0172740:CDS 35.0%
!! CTTTTTGTGGTTGGTACATA+TGG + chr1_4:57909316-57909335 Msa0172740:intron 35.0%
TAAGTCATAATGTGAGTGGA+AGG - chr1_4:57909347-57909366 None:intergenic 35.0%
GCTATCACCTAAATAGTAAG+AGG - chr1_4:57909875-57909894 None:intergenic 35.0%
!!! AGCTTTTGGAATTGCAATTG+GGG + chr1_4:57909892-57909911 Msa0172740:CDS 35.0%
!!! GAACCCATGAAACAGTTTTT+TGG + chr1_4:57909986-57910005 Msa0172740:CDS 35.0%
ACGAACCACCAATAATTATC+AGG - chr1_4:57910022-57910041 None:intergenic 35.0%
!! CTTTCATTTTAGCACAACCT+TGG + chr1_4:57910095-57910114 Msa0172740:CDS 35.0%
AAAACCAGTGAGTTTCTTGA+GGG - chr1_4:57910152-57910171 None:intergenic 35.0%
TAAAACCAGTGAGTTTCTTG+AGG - chr1_4:57910153-57910172 None:intergenic 35.0%
TCCTTTACCTTAGCAAGAAA+TGG + chr1_4:57910239-57910258 Msa0172740:CDS 35.0%
ACCATTTCTTGCTAAGGTAA+AGG - chr1_4:57910243-57910262 None:intergenic 35.0%
ATAGACATGGATGTATCTTG+CGG + chr1_4:57910379-57910398 Msa0172740:intron 35.0%
CAAATCTGTGAGGATACTAA+AGG + chr1_4:57910457-57910476 Msa0172740:CDS 35.0%
TAGGCACATACCATTCAAAT+GGG - chr1_4:57910672-57910691 None:intergenic 35.0%
TTAGGCACATACCATTCAAA+TGG - chr1_4:57910673-57910692 None:intergenic 35.0%
TTTACTTGCAATTTGTCTCC+AGG + chr1_4:57910746-57910765 Msa0172740:intron 35.0%
GGAGCTGATGTAATAGAAAA+GGG - chr1_4:57910775-57910794 None:intergenic 35.0%
AGGAGCTGATGTAATAGAAA+AGG - chr1_4:57910776-57910795 None:intergenic 35.0%
! TTTTCTATTACATCAGCTCC+TGG + chr1_4:57910775-57910794 Msa0172740:CDS 35.0%
GCACGAGTATTTATTTACCT+TGG - chr1_4:57910869-57910888 None:intergenic 35.0%
TAATGGCCAGATCATCAAAA+AGG - chr1_4:57911085-57911104 None:intergenic 35.0%
! CTAAGAATTGATGGACCTTA+TGG + chr1_4:57911236-57911255 Msa0172740:CDS 35.0%
!!! TAGTTTTTGTAGTCTTGTGC+TGG - chr1_4:57911266-57911285 None:intergenic 35.0%
TACGAAGTTCTTCTTCTAGT+AGG + chr1_4:57911284-57911303 Msa0172740:CDS 35.0%
CAAGAAGAAGACTTAGAAGA+AGG + chr1_4:57911371-57911390 Msa0172740:CDS 35.0%
AAGAAGACTTAGAAGAAGGA+GGG + chr1_4:57911375-57911394 Msa0172740:CDS 35.0%
GGTTCGTTTGAATGGTTTAA+AGG + chr1_4:57911482-57911501 Msa0172740:CDS 35.0%
! AACTACATCCACACCATTTT+TGG - chr1_4:57911636-57911655 None:intergenic 35.0%
ATATAGCTAGCTCCATTTGA+TGG + chr1_4:57912082-57912101 Msa0172740:three_prime_UTR 35.0%
TTACAACTCCATCCATCAAA+TGG - chr1_4:57912097-57912116 None:intergenic 35.0%
AAGAGAGCAAACATGAGTCA+TGG + chr1_4:57905223-57905242 Msa0172740:CDS 40.0%
!!! CGCTGTTTTTTGGATGCTAA+AGG - chr1_4:57905312-57905331 None:intergenic 40.0%
AACCGAAGCAAGAACAAAAG+TGG + chr1_4:57905333-57905352 Msa0172740:CDS 40.0%
GAACAAAAGTGGAAGCTTCA+AGG + chr1_4:57905344-57905363 Msa0172740:CDS 40.0%
! TGAAATGGTGGAGATAACGT+TGG + chr1_4:57905374-57905393 Msa0172740:CDS 40.0%
GTTTCCGTTCAGAATATTCG+CGG + chr1_4:57905414-57905433 Msa0172740:CDS 40.0%
TAAACTAAGACAGGTGTCTC+AGG + chr1_4:57905500-57905519 Msa0172740:CDS 40.0%
AAAACGTTGGAAGTGAAGGT+TGG + chr1_4:57905619-57905638 Msa0172740:CDS 40.0%
CATCAAAACGCTTCTCAACT+TGG - chr1_4:57905647-57905666 None:intergenic 40.0%
!!! TGAGAAGCGTTTTGATGAGT+TGG + chr1_4:57905650-57905669 Msa0172740:CDS 40.0%
TCTAGTATGCATGCATGTCT+AGG + chr1_4:57906123-57906142 Msa0172740:intron 40.0%
TTTCACTAACGTCTGTAGCA+TGG - chr1_4:57906301-57906320 None:intergenic 40.0%
TCGCAACTCTTCCTTTGTTA+TGG - chr1_4:57906661-57906680 None:intergenic 40.0%
! AGGAAGAGTTGCGAGAATTT+TGG + chr1_4:57906667-57906686 Msa0172740:CDS 40.0%
! GGAAGAGTTGCGAGAATTTT+GGG + chr1_4:57906668-57906687 Msa0172740:CDS 40.0%
ACTTGTCAGCATGAAAGAGA+TGG + chr1_4:57906874-57906893 Msa0172740:intron 40.0%
!! TGGCCAAACGGGTTTTATAT+TGG + chr1_4:57906894-57906913 Msa0172740:intron 40.0%
ACGCCAATATAAAACCCGTT+TGG - chr1_4:57906900-57906919 None:intergenic 40.0%
AGAAAACTTAGCACTCGACT+TGG - chr1_4:57906962-57906981 None:intergenic 40.0%
ATTATTGGGTCATGCTAACC+AGG + chr1_4:57907249-57907268 Msa0172740:intron 40.0%
! AACCAGGTTTTCTGTGACAT+TGG + chr1_4:57907265-57907284 Msa0172740:intron 40.0%
AACCAATGTCACAGAAAACC+TGG - chr1_4:57907270-57907289 None:intergenic 40.0%
ATTGGTTAGAACGATCATGC+TGG + chr1_4:57907283-57907302 Msa0172740:intron 40.0%
TTATCCCTGCTGGTGAATAT+TGG + chr1_4:57907737-57907756 Msa0172740:intron 40.0%
!! AAGGGTGTCATATATGTGCA+TGG + chr1_4:57908070-57908089 Msa0172740:intron 40.0%
CTTTAGTAGGGACTAACTTC+TGG - chr1_4:57908895-57908914 None:intergenic 40.0%
ATAGCCCATGACATGGAAAA+CGG - chr1_4:57909059-57909078 None:intergenic 40.0%
CATGTTAAACTTGAGCGTCT+CGG - chr1_4:57909107-57909126 None:intergenic 40.0%
ACATACAGGCAACAAGATCA+AGG - chr1_4:57909131-57909150 None:intergenic 40.0%
! GTGATGGTGTTTCTACATAC+AGG - chr1_4:57909145-57909164 None:intergenic 40.0%
!!! TGCTTGACTTGCACTTTTTG+TGG + chr1_4:57909303-57909322 Msa0172740:intron 40.0%
!! TGACTTGCACTTTTTGTGGT+TGG + chr1_4:57909307-57909326 Msa0172740:intron 40.0%
AATATACCCTACCATGTCGA+GGG - chr1_4:57909588-57909607 None:intergenic 40.0%
! TTTGGAATTGCAATTGGGGT+TGG + chr1_4:57909896-57909915 Msa0172740:CDS 40.0%
CTGTGGCGTGTAATAATCTT+GGG - chr1_4:57909955-57909974 None:intergenic 40.0%
TCTGTGGCGTGTAATAATCT+TGG - chr1_4:57909956-57909975 None:intergenic 40.0%
GGGTTCATATTCTTCATCTG+TGG - chr1_4:57909972-57909991 None:intergenic 40.0%
AACCTTGGTTTCGTCGTAAT+AGG + chr1_4:57910110-57910129 Msa0172740:CDS 40.0%
AAACCAGTGAGTTTCTTGAG+GGG - chr1_4:57910151-57910170 None:intergenic 40.0%
GCGGTTCCAATGATACTATA+CGG + chr1_4:57910398-57910417 Msa0172740:CDS 40.0%
TCGCATCCGTATAGTATCAT+TGG - chr1_4:57910407-57910426 None:intergenic 40.0%
CTACTTCGTGCATTTAGATC+TGG + chr1_4:57910431-57910450 Msa0172740:CDS 40.0%
TTGCATGTGTCTAAACCACA+AGG + chr1_4:57910595-57910614 Msa0172740:CDS 40.0%
TGCATGTGTCTAAACCACAA+GGG + chr1_4:57910596-57910615 Msa0172740:CDS 40.0%
CTAGTGTACTTAAACCCTTG+TGG - chr1_4:57910613-57910632 None:intergenic 40.0%
CAAGGGTTTAAGTACACTAG+TGG + chr1_4:57910613-57910632 Msa0172740:CDS 40.0%
CAGATATCTCCCCATTTGAA+TGG + chr1_4:57910659-57910678 Msa0172740:CDS 40.0%
AGGCACATACCATTCAAATG+GGG - chr1_4:57910671-57910690 None:intergenic 40.0%
TGTAATAGAAAAGGGATGCC+TGG - chr1_4:57910767-57910786 None:intergenic 40.0%
ACGCTTATATAGTCATCTCC+AGG - chr1_4:57910796-57910815 None:intergenic 40.0%
AAGCGTTCACATTCGAACTT+TGG + chr1_4:57910810-57910829 Msa0172740:CDS 40.0%
AGCGTTCACATTCGAACTTT+GGG + chr1_4:57910811-57910830 Msa0172740:CDS 40.0%
ACATTCGAACTTTGGGTGAT+TGG + chr1_4:57910818-57910837 Msa0172740:CDS 40.0%
ATGCCAAGGCTAAGAATTGA+TGG + chr1_4:57911227-57911246 Msa0172740:CDS 40.0%
GTTCTTCTTCTAGTAGGACT+AGG + chr1_4:57911290-57911309 Msa0172740:CDS 40.0%
CTTCTAGTAGGACTAGGAAT+CGG + chr1_4:57911296-57911315 Msa0172740:CDS 40.0%
GAAGAAGACTTAGAAGAAGG+AGG + chr1_4:57911374-57911393 Msa0172740:CDS 40.0%
AGAAGACTTAGAAGAAGGAG+GGG + chr1_4:57911376-57911395 Msa0172740:CDS 40.0%
!! CAAGCGAGCCTATTTCTATT+GGG + chr1_4:57911445-57911464 Msa0172740:CDS 40.0%
GCGAGTAACCCAATAGAAAT+AGG - chr1_4:57911456-57911475 None:intergenic 40.0%
GTTTAAAGGGGTGATGAATG+AGG + chr1_4:57911496-57911515 Msa0172740:CDS 40.0%
TGCACAAGTGTGTATGAAGA+AGG + chr1_4:57911563-57911582 Msa0172740:CDS 40.0%
!!! ACCATTTTTGGCATGGTGAA+GGG - chr1_4:57911624-57911643 None:intergenic 40.0%
TGGATGTAGTTTCAGAGACA+AGG + chr1_4:57911645-57911664 Msa0172740:CDS 40.0%
GGATGTAGTTTCAGAGACAA+GGG + chr1_4:57911646-57911665 Msa0172740:CDS 40.0%
! GGGTTAAGACACATTTTGCT+AGG + chr1_4:57911666-57911685 Msa0172740:CDS 40.0%
! CACATTTTGCTAGGCCAAAT+TGG + chr1_4:57911675-57911694 Msa0172740:CDS 40.0%
CGAACTAAGAAGGCTTTCTT+TGG + chr1_4:57911913-57911932 Msa0172740:CDS 40.0%
GCACACAGATTCTACGTACT+TGG + chr1_4:57905129-57905148 Msa0172740:five_prime_UTR 45.0%
GAGCAAACATGAGTCATGGT+CGG + chr1_4:57905227-57905246 Msa0172740:CDS 45.0%
!!! GCTTCGGTTTCGCTGTTTTT+TGG - chr1_4:57905322-57905341 None:intergenic 45.0%
AGTGGAAGCTTCAAGGATGA+CGG + chr1_4:57905351-57905370 Msa0172740:CDS 45.0%
! CTTCAAGGATGACGGTGAAA+TGG + chr1_4:57905359-57905378 Msa0172740:CDS 45.0%
TCCACCGCGAATATTCTGAA+CGG - chr1_4:57905421-57905440 None:intergenic 45.0%
GCTTTCGGCTAAACTAAGAC+AGG + chr1_4:57905491-57905510 Msa0172740:CDS 45.0%
! GAAGCGCATGACGTCTTTTA+AGG + chr1_4:57905527-57905546 Msa0172740:CDS 45.0%
!! TTTTGATGAGTTGGCTGTGG+AGG + chr1_4:57905659-57905678 Msa0172740:CDS 45.0%
! TTTGATGAGTTGGCTGTGGA+GGG + chr1_4:57905660-57905679 Msa0172740:CDS 45.0%
! CACTGGCTAAATCGAGTCTT+GGG - chr1_4:57905693-57905712 None:intergenic 45.0%
ACTCGATTTAGCCAGTGCAT+AGG + chr1_4:57905696-57905715 Msa0172740:CDS 45.0%
ACATGGACATACCTATGCAC+TGG - chr1_4:57905710-57905729 None:intergenic 45.0%
AACGAGTCAAAGGAGTTTGC+TGG + chr1_4:57906588-57906607 Msa0172740:CDS 45.0%
GCATGAAAGAGATGGCCAAA+CGG + chr1_4:57906882-57906901 Msa0172740:intron 45.0%
CATGAAAGAGATGGCCAAAC+GGG + chr1_4:57906883-57906902 Msa0172740:intron 45.0%
AACGATCATGCTGGTGTTTC+TGG + chr1_4:57907292-57907311 Msa0172740:intron 45.0%
ACGATCATGCTGGTGTTTCT+GGG + chr1_4:57907293-57907312 Msa0172740:intron 45.0%
CCAGCAGGGATAATTTCCTA+TGG - chr1_4:57907730-57907749 None:intergenic 45.0%
CCATAGGAAATTATCCCTGC+TGG + chr1_4:57907727-57907746 Msa0172740:intron 45.0%
! CTTATTGGCCGAAGCACTTA+AGG - chr1_4:57908526-57908545 None:intergenic 45.0%
GGAATATGCTGCCCTTATCA+TGG + chr1_4:57908572-57908591 Msa0172740:CDS 45.0%
ATATGCTGCCCTTATCATGG+AGG + chr1_4:57908575-57908594 Msa0172740:CDS 45.0%
GTTATGTGAGCTGATTGTGC+TGG - chr1_4:57908839-57908858 None:intergenic 45.0%
! TTTGCGCAGCACTTTTCACT+TGG + chr1_4:57909008-57909027 Msa0172740:CDS 45.0%
TGACACAATAGCCCATGACA+TGG - chr1_4:57909066-57909085 None:intergenic 45.0%
TATTGTGTCACCACGGCTAA+GGG + chr1_4:57909076-57909095 Msa0172740:CDS 45.0%
CGAGACGCTCAAGTTTAACA+TGG + chr1_4:57909105-57909124 Msa0172740:CDS 45.0%
GAAACACCATCACTTGGCTT+AGG + chr1_4:57909152-57909171 Msa0172740:CDS 45.0%
ATATACCCTACCATGTCGAG+GGG - chr1_4:57909587-57909606 None:intergenic 45.0%
CAATATACCCTACCATGTCG+AGG - chr1_4:57909589-57909608 None:intergenic 45.0%
CTCGACATGGTAGGGTATAT+TGG + chr1_4:57909587-57909606 Msa0172740:intron 45.0%
TGGTTCGTTAAAGGAACCGA+GGG + chr1_4:57910034-57910053 Msa0172740:CDS 45.0%
TGTGGTCATGGTTGTGCTTA+TGG + chr1_4:57910066-57910085 Msa0172740:CDS 45.0%
AGCCTATTACGACGAAACCA+AGG - chr1_4:57910115-57910134 None:intergenic 45.0%
!!! GTTTCTTGAGGGGTTTTGGA+AGG - chr1_4:57910141-57910160 None:intergenic 45.0%
! GTGAGTTTCTTGAGGGGTTT+TGG - chr1_4:57910145-57910164 None:intergenic 45.0%
AAACCCCTCAAGAAACTCAC+TGG + chr1_4:57910145-57910164 Msa0172740:CDS 45.0%
GATCTGGCTACAAATCTGTG+AGG + chr1_4:57910447-57910466 Msa0172740:CDS 45.0%
TGCAATGCCAGTACATTTCC+CGG - chr1_4:57910580-57910599 None:intergenic 45.0%
TGATTGGACGTCACAACTGA+AGG + chr1_4:57910834-57910853 Msa0172740:CDS 45.0%
GATTGGACGTCACAACTGAA+GGG + chr1_4:57910835-57910854 Msa0172740:CDS 45.0%
!!! ACTGAAGGGTATTTTCGCCA+AGG + chr1_4:57910849-57910868 Msa0172740:CDS 45.0%
TTCATCGTCATGGTTTACGC+AGG + chr1_4:57910976-57910995 Msa0172740:intron 45.0%
CCACTTTGGTCATCATTTGC+TGG - chr1_4:57911010-57911029 None:intergenic 45.0%
CCAGCAAATGATGACCAAAG+TGG + chr1_4:57911007-57911026 Msa0172740:CDS 45.0%
CAGCTCTTAGAAGACCACTT+TGG - chr1_4:57911024-57911043 None:intergenic 45.0%
CTAAGAGCTGATATGCTACC+AGG + chr1_4:57911034-57911053 Msa0172740:CDS 45.0%
GGTCCATCAATTCTTAGCCT+TGG - chr1_4:57911233-57911252 None:intergenic 45.0%
CCAATAGAAATAGGCTCGCT+TGG - chr1_4:57911447-57911466 None:intergenic 45.0%
!! CCAAGCGAGCCTATTTCTAT+TGG + chr1_4:57911444-57911463 Msa0172740:CDS 45.0%
!! TGAGGTAGCGGAGAATGATA+AGG + chr1_4:57911514-57911533 Msa0172740:CDS 45.0%
! GTAGCGGAGAATGATAAGGA+AGG + chr1_4:57911518-57911537 Msa0172740:CDS 45.0%
TCCCTTCACCATGCCAAAAA+TGG + chr1_4:57911620-57911639 Msa0172740:CDS 45.0%
!!! CACCATTTTTGGCATGGTGA+AGG - chr1_4:57911625-57911644 None:intergenic 45.0%
TCACCATGCCAAAAATGGTG+TGG + chr1_4:57911625-57911644 Msa0172740:CDS 45.0%
!!! CATCCACACCATTTTTGGCA+TGG - chr1_4:57911631-57911650 None:intergenic 45.0%
! GATTGGTTGGCGAACTAAGA+AGG + chr1_4:57911903-57911922 Msa0172740:CDS 45.0%
AGCTAGCTCCATTTGATGGA+TGG + chr1_4:57912086-57912105 Msa0172740:three_prime_UTR 45.0%
!!! TAAGTTTTTTAAAAAAAAAA+AGG + chr1_4:57906406-57906425 Msa0172740:intron 5.0%
!!! AAGTTTTTTAAAAAAAAAAA+GGG + chr1_4:57906407-57906426 Msa0172740:intron 5.0%
!!! AAATAATATTAGTTTTTTTT+TGG - chr1_4:57906532-57906551 None:intergenic 5.0%
!!! ACTAATATTATTTTTTAATT+TGG + chr1_4:57906539-57906558 Msa0172740:intron 5.0%
!!! CTAATATTATTTTTTAATTT+GGG + chr1_4:57906540-57906559 Msa0172740:intron 5.0%
!!! TAATATTATTTTTTAATTTG+GGG + chr1_4:57906541-57906560 Msa0172740:intron 5.0%
! CAAGGATGACGGTGAAATGG+TGG + chr1_4:57905362-57905381 Msa0172740:CDS 50.0%
TCCGTTCAGAATATTCGCGG+TGG + chr1_4:57905417-57905436 Msa0172740:CDS 50.0%
AGTTTAGCCGAAAGCGACGA+CGG - chr1_4:57905486-57905505 None:intergenic 50.0%
!! GCGTTTTGATGAGTTGGCTG+TGG + chr1_4:57905656-57905675 Msa0172740:CDS 50.0%
!! GCACTGGCTAAATCGAGTCT+TGG - chr1_4:57905694-57905713 None:intergenic 50.0%
TATACCTCGACGACGTGCTA+AGG - chr1_4:57906628-57906647 None:intergenic 50.0%
TCAGCATTCTTGTCCACCCT+GGG - chr1_4:57908296-57908315 None:intergenic 50.0%
ATCAGCATTCTTGTCCACCC+TGG - chr1_4:57908297-57908316 None:intergenic 50.0%
AGGGTGGACAAGAATGCTGA+TGG + chr1_4:57908296-57908315 Msa0172740:intron 50.0%
GTCCAGCTCCTCCATGATAA+GGG - chr1_4:57908586-57908605 None:intergenic 50.0%
AAACGGCACGACGTTTGTAC+TGG - chr1_4:57909042-57909061 None:intergenic 50.0%
!!! TCGTGCCGTTTTCCATGTCA+TGG + chr1_4:57909051-57909070 Msa0172740:CDS 50.0%
!!! CGTGCCGTTTTCCATGTCAT+GGG + chr1_4:57909052-57909071 Msa0172740:CDS 50.0%
! CATGGGCTATTGTGTCACCA+CGG + chr1_4:57909069-57909088 Msa0172740:CDS 50.0%
CTATTGTGTCACCACGGCTA+AGG + chr1_4:57909075-57909094 Msa0172740:CDS 50.0%
CCTACTCCTAAGCCAAGTGA+TGG - chr1_4:57909161-57909180 None:intergenic 50.0%
CCATCACTTGGCTTAGGAGT+AGG + chr1_4:57909158-57909177 Msa0172740:CDS 50.0%
!! GGTCACTGGTGCTATCAACA+CGG + chr1_4:57909538-57909557 Msa0172740:intron 50.0%
CATGTCGAGGGGCTATTTGT+GGG - chr1_4:57909576-57909595 None:intergenic 50.0%
AAATAGCCCCTCGACATGGT+AGG + chr1_4:57909578-57909597 Msa0172740:intron 50.0%
AATAGCCCCTCGACATGGTA+GGG + chr1_4:57909579-57909598 Msa0172740:intron 50.0%
GTGGTTCGTTAAAGGAACCG+AGG + chr1_4:57910033-57910052 Msa0172740:CDS 50.0%
TCGTTAAAGGAACCGAGGGT+TGG + chr1_4:57910038-57910057 Msa0172740:CDS 50.0%
AAGCACAACCATGACCACAC+CGG - chr1_4:57910065-57910084 None:intergenic 50.0%
AATCCAGGTTGCAGTGTACC+CGG + chr1_4:57910558-57910577 Msa0172740:intron 50.0%
AGTGTACCCGGGAAATGTAC+TGG + chr1_4:57910570-57910589 Msa0172740:CDS 50.0%
GCAATGCCAGTACATTTCCC+GGG - chr1_4:57910579-57910598 None:intergenic 50.0%
!! CTTGGTAGGCTTGATTTGCC+TGG - chr1_4:57911055-57911074 None:intergenic 50.0%
CAGGCAAATCAAGCCTACCA+AGG + chr1_4:57911053-57911072 Msa0172740:CDS 50.0%
! TCTTGTGCTGGTGCTCCATA+AGG - chr1_4:57911254-57911273 None:intergenic 50.0%
AGACTTAGAAGAAGGAGGGG+AGG + chr1_4:57911379-57911398 Msa0172740:CDS 50.0%
TAGGCTCGCTTGGTTGCAAA+AGG - chr1_4:57911437-57911456 None:intergenic 50.0%
TATTGGGTTACTCGCGAGCA+GGG + chr1_4:57911461-57911480 Msa0172740:CDS 50.0%
AGGGGTGATGAATGAGGTAG+CGG + chr1_4:57911502-57911521 Msa0172740:CDS 50.0%
TGTATGAAGAAGGCGACGCT+CGG + chr1_4:57911573-57911592 Msa0172740:CDS 50.0%
!!! GTTTTTTACTGTGGAGCGCC+TGG + chr1_4:57911881-57911900 Msa0172740:CDS 50.0%
CTTAGTTCGCCAACCAATCC+AGG - chr1_4:57911902-57911921 None:intergenic 50.0%
CTTCGGCTTTCTGTGCTCTC+TGG - chr1_4:57905255-57905274 None:intergenic 55.0%
GCACAGAAAGCCGAAGCTCA+CGG + chr1_4:57905259-57905278 Msa0172740:CDS 55.0%
CACAGAAAGCCGAAGCTCAC+GGG + chr1_4:57905260-57905279 Msa0172740:CDS 55.0%
GATGCTAAAGGCCCGCTTAG+CGG - chr1_4:57905300-57905319 None:intergenic 55.0%
AGACACCGAAACGGCGTTTC+TGG + chr1_4:57905440-57905459 Msa0172740:CDS 55.0%
GCTTGCCAGAAACGCCGTTT+CGG - chr1_4:57905448-57905467 None:intergenic 55.0%
!! AAACGGCGTTTCTGGCAAGC+CGG + chr1_4:57905448-57905467 Msa0172740:CDS 55.0%
! ACTCGTGTGCCACTATCCCA+GGG + chr1_4:57908277-57908296 Msa0172740:intron 55.0%
TCTTGTCCACCCTGGGATAG+TGG - chr1_4:57908289-57908308 None:intergenic 55.0%
TGCCCTTATCATGGAGGAGC+TGG + chr1_4:57908581-57908600 Msa0172740:CDS 55.0%
GGTCCAGCTCCTCCATGATA+AGG - chr1_4:57908587-57908606 None:intergenic 55.0%
GAGCTGGACCCAAACAACCT+TGG + chr1_4:57908597-57908616 Msa0172740:CDS 55.0%
CTTGGCTTAGGAGTAGGACC+AGG + chr1_4:57909164-57909183 Msa0172740:CDS 55.0%
CTTAGGAGTAGGACCAGGCT+TGG + chr1_4:57909169-57909188 Msa0172740:CDS 55.0%
GAGTAGGACCAGGCTTGGAA+TGG + chr1_4:57909174-57909193 Msa0172740:CDS 55.0%
TAGGACCAGGCTTGGAATGG+TGG + chr1_4:57909177-57909196 Msa0172740:CDS 55.0%
TGGAACCACCATTCCAAGCC+TGG - chr1_4:57909185-57909204 None:intergenic 55.0%
!! GCTATTTGTGGGTTGGTGCG+TGG - chr1_4:57909565-57909584 None:intergenic 55.0%
TCGAGGGGCTATTTGTGGGT+TGG - chr1_4:57909572-57909591 None:intergenic 55.0%
CCATGTCGAGGGGCTATTTG+TGG - chr1_4:57909577-57909596 None:intergenic 55.0%
CCACAAATAGCCCCTCGACA+TGG + chr1_4:57909574-57909593 Msa0172740:intron 55.0%
AAAGGAACCGAGGGTTGGAC+CGG + chr1_4:57910043-57910062 Msa0172740:CDS 55.0%
ATCCAGGTTGCAGTGTACCC+GGG + chr1_4:57910559-57910578 Msa0172740:intron 55.0%
CTTAGAAGAAGGAGGGGAGG+TGG + chr1_4:57911382-57911401 Msa0172740:CDS 55.0%
CTATTGGGTTACTCGCGAGC+AGG + chr1_4:57911460-57911479 Msa0172740:CDS 55.0%
GCGAGCAGGGTTCGTTTGAA+TGG + chr1_4:57911474-57911493 Msa0172740:CDS 55.0%
! TTACTGTGGAGCGCCTGGAT+TGG + chr1_4:57911886-57911905 Msa0172740:CDS 55.0%
AGAAAGCCGAAGCTCACGGG+TGG + chr1_4:57905263-57905282 Msa0172740:CDS 60.0%
GAAAGCCGAAGCTCACGGGT+GGG + chr1_4:57905264-57905283 Msa0172740:CDS 60.0%
TGAAGCCCACCCGTGAGCTT+CGG - chr1_4:57905272-57905291 None:intergenic 60.0%
TCGCGGTGGAGACACCGAAA+CGG + chr1_4:57905431-57905450 Msa0172740:CDS 60.0%
ACGACGGACGCTTCTCAAGC+CGG - chr1_4:57905470-57905489 None:intergenic 60.0%
! GAAGCGTCCGTCGTCGCTTT+CGG + chr1_4:57905476-57905495 Msa0172740:CDS 60.0%
!! GGTGCTGCTCGTGCTCTACA+AGG + chr1_4:57905579-57905598 Msa0172740:CDS 60.0%
GATGCCTTAGCACGTCGTCG+AGG + chr1_4:57906621-57906640 Msa0172740:CDS 60.0%
! CACTCGTGTGCCACTATCCC+AGG + chr1_4:57908276-57908295 Msa0172740:intron 60.0%
TGTGTCACCACGGCTAAGGG+TGG + chr1_4:57909079-57909098 Msa0172740:CDS 60.0%
TTCCCGGGTACACTGCAACC+TGG - chr1_4:57910564-57910583 None:intergenic 60.0%
!! TGTGGAGCGCCTGGATTGGT+TGG + chr1_4:57911890-57911909 Msa0172740:CDS 60.0%
! AGCTCACGGGTGGGCTTCAG+CGG + chr1_4:57905273-57905292 Msa0172740:CDS 65.0%
! CGTGTGCCACTATCCCAGGG+TGG + chr1_4:57908280-57908299 Msa0172740:intron 65.0%
AACCGAGGGTTGGACCGGTG+TGG + chr1_4:57910048-57910067 Msa0172740:CDS 65.0%
GACCACACCGGTCCAACCCT+CGG - chr1_4:57910053-57910072 None:intergenic 65.0%
GGGTTGGACCGGTGTGGTCA+TGG + chr1_4:57910054-57910073 Msa0172740:CDS 65.0%
! GCTCACGGGTGGGCTTCAGC+GGG + chr1_4:57905274-57905293 Msa0172740:CDS 70.0%
GGCTTCAGCGGGCCGCTAAG+CGG + chr1_4:57905285-57905304 Msa0172740:CDS 70.0%
GCTTCAGCGGGCCGCTAAGC+GGG + chr1_4:57905286-57905305 Msa0172740:CDS 70.0%
CTCGGCACCACCCTTAGCCG+TGG - chr1_4:57909089-57909108 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 57904937 57912189 57904937 ID=Msa0172740;Name=Msa0172740
chr1_4 mRNA 57904937 57912189 57904937 ID=Msa0172740-mRNA-1;Parent=Msa0172740;Name=Msa0172740-mRNA-1;_AED=0.08;_eAED=0.08;_QI=276|1|0.91|1|1|1|12|201|888
chr1_4 exon 57904937 57905717 57904937 ID=Msa0172740-mRNA-1:exon:17782;Parent=Msa0172740-mRNA-1
chr1_4 exon 57906583 57906742 57906583 ID=Msa0172740-mRNA-1:exon:17783;Parent=Msa0172740-mRNA-1
chr1_4 exon 57908298 57908346 57908298 ID=Msa0172740-mRNA-1:exon:17784;Parent=Msa0172740-mRNA-1
chr1_4 exon 57908516 57908629 57908516 ID=Msa0172740-mRNA-1:exon:17785;Parent=Msa0172740-mRNA-1
chr1_4 exon 57908803 57909231 57908803 ID=Msa0172740-mRNA-1:exon:17786;Parent=Msa0172740-mRNA-1
chr1_4 exon 57909887 57910273 57909887 ID=Msa0172740-mRNA-1:exon:17787;Parent=Msa0172740-mRNA-1
chr1_4 exon 57910383 57910478 57910383 ID=Msa0172740-mRNA-1:exon:17788;Parent=Msa0172740-mRNA-1
chr1_4 exon 57910565 57910680 57910565 ID=Msa0172740-mRNA-1:exon:17789;Parent=Msa0172740-mRNA-1
chr1_4 exon 57910768 57910870 57910768 ID=Msa0172740-mRNA-1:exon:17790;Parent=Msa0172740-mRNA-1
chr1_4 exon 57910998 57911074 57910998 ID=Msa0172740-mRNA-1:exon:17791;Parent=Msa0172740-mRNA-1
chr1_4 exon 57911226 57911746 57911226 ID=Msa0172740-mRNA-1:exon:17792;Parent=Msa0172740-mRNA-1
chr1_4 exon 57911879 57912189 57911879 ID=Msa0172740-mRNA-1:exon:17793;Parent=Msa0172740-mRNA-1
chr1_4 five_prime_UTR 57904937 57905212 57904937 ID=Msa0172740-mRNA-1:five_prime_utr;Parent=Msa0172740-mRNA-1
chr1_4 CDS 57905213 57905717 57905213 ID=Msa0172740-mRNA-1:cds;Parent=Msa0172740-mRNA-1
chr1_4 CDS 57906583 57906742 57906583 ID=Msa0172740-mRNA-1:cds;Parent=Msa0172740-mRNA-1
chr1_4 CDS 57908298 57908346 57908298 ID=Msa0172740-mRNA-1:cds;Parent=Msa0172740-mRNA-1
chr1_4 CDS 57908516 57908629 57908516 ID=Msa0172740-mRNA-1:cds;Parent=Msa0172740-mRNA-1
chr1_4 CDS 57908803 57909231 57908803 ID=Msa0172740-mRNA-1:cds;Parent=Msa0172740-mRNA-1
chr1_4 CDS 57909887 57910273 57909887 ID=Msa0172740-mRNA-1:cds;Parent=Msa0172740-mRNA-1
chr1_4 CDS 57910383 57910478 57910383 ID=Msa0172740-mRNA-1:cds;Parent=Msa0172740-mRNA-1
chr1_4 CDS 57910565 57910680 57910565 ID=Msa0172740-mRNA-1:cds;Parent=Msa0172740-mRNA-1
chr1_4 CDS 57910768 57910870 57910768 ID=Msa0172740-mRNA-1:cds;Parent=Msa0172740-mRNA-1
chr1_4 CDS 57910998 57911074 57910998 ID=Msa0172740-mRNA-1:cds;Parent=Msa0172740-mRNA-1
chr1_4 CDS 57911226 57911746 57911226 ID=Msa0172740-mRNA-1:cds;Parent=Msa0172740-mRNA-1
chr1_4 CDS 57911879 57911988 57911879 ID=Msa0172740-mRNA-1:cds;Parent=Msa0172740-mRNA-1
chr1_4 three_prime_UTR 57911989 57912189 57911989 ID=Msa0172740-mRNA-1:three_prime_utr;Parent=Msa0172740-mRNA-1
Gene Sequence

>Msa0172740

ATGGAAGTTCAAGAGAGCAAACATGAGTCATGGTCGGAGCCAGAGAGCACAGAAAGCCGAAGCTCACGGGTGGGCTTCAGCGGGCCGCTAAGCGGGCCTTTAGCATCCAAAAAACAGCGAAACCGAAGCAAGAACAAAAGTGGAAGCTTCAAGGATGACGGTGAAATGGTGGAGATAACGTTGGACGTACGTGATGACTCTGTTTCCGTTCAGAATATTCGCGGTGGAGACACCGAAACGGCGTTTCTGGCAAGCCGGCTTGAGAAGCGTCCGTCGTCGCTTTCGGCTAAACTAAGACAGGTGTCTCAGGAGCTGAAGCGCATGACGTCTTTTAAGGCGTTTGATAAGGTTGATAGATCAAAATCTGGTGCTGCTCGTGCTCTACAAGGTCTTAAGTTTATGACAAAAAACGTTGGAAGTGAAGGTTGGTCCCAAGTTGAGAAGCGTTTTGATGAGTTGGCTGTGGAGGGAAAATTGCCCAAGACTCGATTTAGCCAGTGCATAGGAATGAACGAGTCAAAGGAGTTTGCTGGTGAGTTATTTGATGCCTTAGCACGTCGTCGAGGTATAGTAGTTGCTTCCATAACAAAGGAAGAGTTGCGAGAATTTTGGGACCAAATTACAGATCAAAGCTTTGATTCAAGGCTTCAAACCTTTTTTGGCATGGTGGACAAGAATGCTGATGGAAGAATTACAGAAGAAGAAGTAAAAGAGATTATTGCCTTAAGTGCTTCGGCCAATAAGCTATCAAAATTACAAGAACGAGCAGAGGAATATGCTGCCCTTATCATGGAGGAGCTGGACCCAAACAACCTTGGATATATTGAGCTGTACAACTTGGAAATGCTTCTTTTACAAGCTCCAGCACAATCAGCTCACATAACTACAGATAGTAGGGTTTTGAGCCAAATGTTAAGCCAGAAGTTAGTCCCTACTAAAGAGCACAATCCTATTAAACGGGCTTTTAGAGAACTAGCTTATTTTATGGAGGACAATTGGAAACGTATTTGGATCATAGCTCTATGGCTTTCAATTTGCGCAGCACTTTTCACTTGGAAGTTCATCCAGTACAAACGTCGTGCCGTTTTCCATGTCATGGGCTATTGTGTCACCACGGCTAAGGGTGGTGCCGAGACGCTCAAGTTTAACATGGCCTTGATCTTGTTGCCTGTATGTAGAAACACCATCACTTGGCTTAGGAGTAGGACCAGGCTTGGAATGGTGGTTCCATTTGATGACAATATCAACTTTCACAAGGTGATAGCTTTTGGAATTGCAATTGGGGTTGGATTACATGCAATTTCACATTTAACTTGCGACTTCCCAAGATTATTACACGCCACAGATGAAGAATATGAACCCATGAAACAGTTTTTTGGAGATGAAAGACCTGATAATTATTGGTGGTTCGTTAAAGGAACCGAGGGTTGGACCGGTGTGGTCATGGTTGTGCTTATGGCTATAGCTTTCATTTTAGCACAACCTTGGTTTCGTCGTAATAGGCTAAACCTTCCAAAACCCCTCAAGAAACTCACTGGTTTTAATGCATTTTGGTATTCACATCACCTTTTTGTCATTGTATATGTTCTTTTTATCATTCATGGATACTTCCTTTACCTTAGCAAGAAATGGTATAAGAAAACGACATGGATGTATCTTGCGGTTCCAATGATACTATACGGATGCGAAAGACTACTTCGTGCATTTAGATCTGGCTACAAATCTGTGAGGATACTAAAGGTTGCAGTGTACCCGGGAAATGTACTGGCATTGCATGTGTCTAAACCACAAGGGTTTAAGTACACTAGTGGACAGTATATTTATGTTAATTGTTCAGATATCTCCCCATTTGAATGGCATCCCTTTTCTATTACATCAGCTCCTGGAGATGACTATATAAGCGTTCACATTCGAACTTTGGGTGATTGGACGTCACAACTGAAGGGTATTTTCGCCAAGGCATGTCAACCAGCAAATGATGACCAAAGTGGTCTTCTAAGAGCTGATATGCTACCAGGCAAATCAAGCCTACCAAGGATGCCAAGGCTAAGAATTGATGGACCTTATGGAGCACCAGCACAAGACTACAAAAACTACGAAGTTCTTCTTCTAGTAGGACTAGGAATCGGTGCAACGCCTTTGATTAGCATACTCAAAGATGTGCTAAACAACATTAAGCAACAAGAAGAAGACTTAGAAGAAGGAGGGGAGGTGGAAAGCGAAGTTAAGAACAATAAGAAAAAGCCTTTTGCAACCAAGCGAGCCTATTTCTATTGGGTTACTCGCGAGCAGGGTTCGTTTGAATGGTTTAAAGGGGTGATGAATGAGGTAGCGGAGAATGATAAGGAAGGAGTAATTGAGCTTCATAACTATTGCACAAGTGTGTATGAAGAAGGCGACGCTCGGTCAGCTTTGATCACAATGCTTCAATCCCTTCACCATGCCAAAAATGGTGTGGATGTAGTTTCAGAGACAAGGGTTAAGACACATTTTGCTAGGCCAAATTGGCGTAATGTTTATAAACATGTTGCTCTTAAACACCCTGAAAAAAAAGTTGGTGTTTTTTACTGTGGAGCGCCTGGATTGGTTGGCGAACTAAGAAGGCTTTCTTTGGACTTTTCAAGAAAAACTGGCACCAAGTTTGATTTTCATAAAGAGAATTTTTAG
Protein sequence

>Msa0172740

MEVQESKHESWSEPESTESRSSRVGFSGPLSGPLASKKQRNRSKNKSGSFKDDGEMVEITLDVRDDSVSVQNIRGGDTETAFLASRLEKRPSSLSAKLRQVSQELKRMTSFKAFDKVDRSKSGAARALQGLKFMTKNVGSEGWSQVEKRFDELAVEGKLPKTRFSQCIGMNESKEFAGELFDALARRRGIVVASITKEELREFWDQITDQSFDSRLQTFFGMVDKNADGRITEEEVKEIIALSASANKLSKLQERAEEYAALIMEELDPNNLGYIELYNLEMLLLQAPAQSAHITTDSRVLSQMLSQKLVPTKEHNPIKRAFRELAYFMEDNWKRIWIIALWLSICAALFTWKFIQYKRRAVFHVMGYCVTTAKGGAETLKFNMALILLPVCRNTITWLRSRTRLGMVVPFDDNINFHKVIAFGIAIGVGLHAISHLTCDFPRLLHATDEEYEPMKQFFGDERPDNYWWFVKGTEGWTGVVMVVLMAIAFILAQPWFRRNRLNLPKPLKKLTGFNAFWYSHHLFVIVYVLFIIHGYFLYLSKKWYKKTTWMYLAVPMILYGCERLLRAFRSGYKSVRILKVAVYPGNVLALHVSKPQGFKYTSGQYIYVNCSDISPFEWHPFSITSAPGDDYISVHIRTLGDWTSQLKGIFAKACQPANDDQSGLLRADMLPGKSSLPRMPRLRIDGPYGAPAQDYKNYEVLLLVGLGIGATPLISILKDVLNNIKQQEEDLEEGGEVESEVKNNKKKPFATKRAYFYWVTREQGSFEWFKGVMNEVAENDKEGVIELHNYCTSVYEEGDARSALITMLQSLHHAKNGVDVVSETRVKTHFARPNWRNVYKHVALKHPEKKVGVFYCGAPGLVGELRRLSLDFSRKTGTKFDFHKENF*