Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834660 | XP_003607944.1 | 68.315 | 546 | 154 | 3 | 1 | 528 | 1 | 545 | 0.0 | 764 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834660 | G7JK31 | 68.315 | 546 | 154 | 3 | 1 | 528 | 1 | 545 | 0.0 | 764 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055740 | Msa0834660 | 0.814237 | 1.706674e-51 | -8.615850e-47 |
| Msa0826320 | Msa0834660 | 0.845151 | 4.856226e-59 | -8.615850e-47 |
| Msa0834660 | Msa1014730 | 0.805238 | 1.470110e-49 | -8.615850e-47 |
| Msa0834660 | Msa1107810 | -0.822757 | 1.997230e-53 | -8.615850e-47 |
| Msa0834660 | Msa1188070 | 0.801895 | 7.255710e-49 | -8.615850e-47 |
| Msa0834660 | Msa1287370 | -0.812167 | 4.858190e-51 | -8.615850e-47 |
| Msa0834660 | Msa1384240 | 0.822558 | 2.222054e-53 | -8.615850e-47 |
| Msa0194440 | Msa0834660 | 0.822394 | 2.425508e-53 | -8.615850e-47 |
| Msa0369460 | Msa0834660 | 0.828381 | 9.279160e-55 | -8.615850e-47 |
| Msa0283990 | Msa0834660 | 0.832084 | 1.156261e-55 | -8.615850e-47 |
| Msa0537720 | Msa0834660 | 0.838397 | 2.947341e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834660 | MtrunA17_Chr4g0044661 | 61.172 | 546 | 138 | 5 | 1 | 528 | 1 | 490 | 0.0 | 647 |
| Msa0834660 | MtrunA17_Chr5g0421991 | 58.633 | 278 | 108 | 3 | 257 | 528 | 2 | 278 | 7.03e-97 | 295 |
| Msa0834660 | MtrunA17_Chr1g0167871 | 35.945 | 434 | 266 | 8 | 9 | 438 | 208 | 633 | 5.52e-80 | 264 |
| Msa0834660 | MtrunA17_Chr2g0304851 | 34.367 | 387 | 225 | 8 | 5 | 386 | 3 | 365 | 1.07e-69 | 228 |
| Msa0834660 | MtrunA17_Chr1g0171051 | 41.195 | 318 | 120 | 5 | 7 | 291 | 49 | 332 | 9.36e-66 | 217 |
| Msa0834660 | MtrunA17_Chr5g0393521 | 35.393 | 178 | 115 | 0 | 261 | 438 | 9 | 186 | 4.24e-33 | 127 |
| Msa0834660 | MtrunA17_Chr5g0393531 | 35.377 | 212 | 114 | 7 | 9 | 213 | 3 | 198 | 8.00e-33 | 124 |
| Msa0834660 | MtrunA17_Chr5g0420451 | 34.434 | 212 | 123 | 4 | 10 | 221 | 5 | 200 | 6.67e-32 | 122 |
| Msa0834660 | MtrunA17_Chr7g0231491 | 37.989 | 179 | 108 | 2 | 9 | 185 | 37 | 214 | 1.91e-31 | 122 |
| Msa0834660 | MtrunA17_Chr8g0347361 | 35.542 | 166 | 106 | 1 | 5 | 170 | 9 | 173 | 1.53e-30 | 118 |
| Msa0834660 | MtrunA17_Chr7g0223511 | 34.615 | 156 | 101 | 1 | 5 | 160 | 22 | 176 | 1.58e-27 | 110 |
| Msa0834660 | MtrunA17_Chr5g0417421 | 36.552 | 145 | 92 | 0 | 294 | 438 | 110 | 254 | 2.35e-27 | 111 |
| Msa0834660 | MtrunA17_Chr2g0278111 | 26.744 | 258 | 177 | 5 | 26 | 277 | 20 | 271 | 1.66e-25 | 107 |
| Msa0834660 | MtrunA17_Chr5g0411141 | 26.744 | 258 | 177 | 5 | 26 | 277 | 21 | 272 | 1.72e-25 | 107 |
| Msa0834660 | MtrunA17_Chr1g0172341 | 42.982 | 114 | 64 | 1 | 7 | 120 | 3 | 115 | 1.97e-25 | 100 |
| Msa0834660 | MtrunA17_Chr6g0481111 | 37.226 | 137 | 84 | 2 | 7 | 142 | 1 | 136 | 4.40e-25 | 100 |
| Msa0834660 | MtrunA17_Chr5g0423441 | 27.232 | 224 | 154 | 4 | 26 | 243 | 20 | 240 | 2.19e-23 | 99.4 |
| Msa0834660 | MtrunA17_Chr2g0280031 | 26.180 | 233 | 154 | 5 | 26 | 243 | 1 | 230 | 1.30e-19 | 89.0 |
| Msa0834660 | MtrunA17_Chr1g0206481 | 25.448 | 279 | 192 | 7 | 26 | 295 | 20 | 291 | 8.92e-19 | 87.0 |
| Msa0834660 | MtrunA17_Chr4g0026601 | 32.258 | 155 | 97 | 3 | 26 | 178 | 33 | 181 | 9.30e-18 | 81.3 |
| Msa0834660 | MtrunA17_Chr5g0421841 | 26.562 | 192 | 137 | 2 | 26 | 213 | 20 | 211 | 1.10e-17 | 82.0 |
| Msa0834660 | MtrunA17_Chr6g0462951 | 33.077 | 130 | 85 | 1 | 89 | 216 | 2 | 131 | 1.17e-17 | 79.7 |
| Msa0834660 | MtrunA17_Chr5g0393801 | 37.000 | 100 | 62 | 1 | 9 | 108 | 3 | 101 | 1.66e-17 | 78.6 |
| Msa0834660 | MtrunA17_Chr4g0022201 | 44.944 | 89 | 49 | 0 | 5 | 93 | 74 | 162 | 1.82e-15 | 74.3 |
| Msa0834660 | MtrunA17_Chr7g0234461 | 35.417 | 96 | 62 | 0 | 47 | 142 | 1 | 96 | 2.76e-14 | 68.9 |
| Msa0834660 | MtrunA17_Chr8g0363071 | 28.662 | 157 | 110 | 2 | 54 | 208 | 2 | 158 | 2.45e-13 | 67.8 |
| Msa0834660 | MtrunA17_Chr1g0148611 | 28.125 | 160 | 112 | 3 | 54 | 211 | 2 | 160 | 2.73e-13 | 67.8 |
| Msa0834660 | MtrunA17_Chr6g0474551 | 32.632 | 95 | 64 | 0 | 251 | 345 | 6 | 100 | 4.10e-13 | 65.5 |
| Msa0834660 | MtrunA17_Chr8g0373221 | 53.191 | 47 | 22 | 0 | 7 | 53 | 49 | 95 | 2.45e-12 | 63.5 |
| Msa0834660 | MtrunA17_Chr1g0158831 | 27.344 | 128 | 88 | 2 | 150 | 277 | 12 | 134 | 5.84e-11 | 61.6 |
| Msa0834660 | MtrunA17_Chr3g0093401 | 22.034 | 236 | 173 | 4 | 10 | 242 | 4 | 231 | 6.09e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834660 | AT1G52950.1 | 22.803 | 421 | 288 | 13 | 10 | 410 | 6 | 409 | 9.76e-18 | 86.7 |
Find 119 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAAATATTTAACATATTT+TGG | 0.082429 | 5_4:+7730542 | None:intergenic |
| TTTGGAGTCTTTGCATTCTT+TGG | 0.198670 | 5_4:+7730660 | None:intergenic |
| TGTTTGTATTTGTTACTTCT+TGG | 0.199869 | 5_4:+7732546 | None:intergenic |
| CTTCACAACCAAGTCATTAT+TGG | 0.203733 | 5_4:+7732811 | None:intergenic |
| TCAGCAACATGGGGCAATTC+TGG | 0.227687 | 5_4:+7732082 | None:intergenic |
| AACAATTGATCAAGTACTTT+TGG | 0.227964 | 5_4:+7731204 | None:intergenic |
| CCCTCAACTTCAAGGACTTT+GGG | 0.237251 | 5_4:-7732706 | Msa0834660:CDS |
| ATAAGGCAAGATTCCTATTC+TGG | 0.241625 | 5_4:-7731423 | Msa0834660:CDS |
| CTGTGAGGATTGTTGATCTT+TGG | 0.243477 | 5_4:-7733461 | Msa0834660:CDS |
| CAAGGACTTTGGGGAAGTTC+TGG | 0.251239 | 5_4:-7732696 | Msa0834660:CDS |
| ACTGCGAACTTTGACTGAAT+TGG | 0.261314 | 5_4:+7731911 | None:intergenic |
| CGTTTCAGACTCATTGTAAC+AGG | 0.267556 | 5_4:-7732776 | Msa0834660:CDS |
| CACTTTGCTTCACAAATACT+TGG | 0.299594 | 5_4:-7732129 | Msa0834660:CDS |
| TTTGAGGGCACACATGATTA+AGG | 0.313328 | 5_4:-7731359 | Msa0834660:intron |
| CTCTGCCAGCAGATGCTGTT+GGG | 0.317215 | 5_4:-7731951 | Msa0834660:CDS |
| GTCATCTAAGGAAAGTCTTT+TGG | 0.318239 | 5_4:+7730761 | None:intergenic |
| AACATCTAGCGCTCCAGCTT+TGG | 0.334304 | 5_4:+7730642 | None:intergenic |
| AAGTGCAGCACATCTTTAAA+TGG | 0.339284 | 5_4:+7732869 | None:intergenic |
| TTCAGAATCAGGGTCATCTA+AGG | 0.341016 | 5_4:+7730749 | None:intergenic |
| TGGAGTAGAAGAAGTTATAT+TGG | 0.356255 | 5_4:+7730788 | None:intergenic |
| GAAAGTATCAGCACATAGTT+TGG | 0.359604 | 5_4:+7732313 | None:intergenic |
| TGAGATTAATAATGTCAAAA+AGG | 0.361379 | 5_4:-7731839 | Msa0834660:intron |
| TGAGTTGGCTGAAGATCTAT+TGG | 0.368307 | 5_4:+7730711 | None:intergenic |
| CTTGAACAATACTTATGAAA+TGG | 0.372173 | 5_4:-7732849 | Msa0834660:CDS |
| ACCGTCCATCCTAACACTTT+TGG | 0.372654 | 5_4:+7731633 | None:intergenic |
| ACCCTCAACTTCAAGGACTT+TGG | 0.375210 | 5_4:-7732707 | Msa0834660:CDS |
| CTGCGAACTTTGACTGAATT+GGG | 0.376018 | 5_4:+7731912 | None:intergenic |
| AAGAATCTTGAAACACAGTT+TGG | 0.379039 | 5_4:-7731093 | Msa0834660:CDS |
| AACACAGTTTGGTTTGTTAG+AGG | 0.379713 | 5_4:-7731082 | Msa0834660:intron |
| CCCAAAGTCCTTGAAGTTGA+GGG | 0.384218 | 5_4:+7732706 | None:intergenic |
| TCAATTGTTGTCTGAAAAGA+AGG | 0.387649 | 5_4:-7731190 | Msa0834660:CDS |
| CAAGCAACAGTGAAGAATAT+TGG | 0.404573 | 5_4:+7732349 | None:intergenic |
| GTTGATCTTTGGCCAGTCAT+TGG | 0.407356 | 5_4:-7733450 | Msa0834660:CDS |
| CTGTTGTTTGTTTCAGAAGA+TGG | 0.411098 | 5_4:-7733559 | Msa0834660:exon |
| AAGCTGGAGCGCTAGATGTT+TGG | 0.425510 | 5_4:-7730639 | Msa0834660:exon |
| ACGAATGCACCAAAAGTGTT+AGG | 0.426384 | 5_4:-7731642 | Msa0834660:CDS |
| GAATGTGTGGCAGATGCTAT+TGG | 0.426791 | 5_4:-7732575 | Msa0834660:intron |
| ATTTCTTTGATCTCATCAAA+TGG | 0.426975 | 5_4:+7733513 | None:intergenic |
| GGAGTAGAAGAAGTTATATT+GGG | 0.436802 | 5_4:+7730789 | None:intergenic |
| TAAATACAGACAAGATTTGT+TGG | 0.440737 | 5_4:-7732669 | Msa0834660:CDS |
| CCCCAAAGTCCTTGAAGTTG+AGG | 0.444188 | 5_4:+7732705 | None:intergenic |
| TGTATTTGTTACTTCTTGGA+AGG | 0.444817 | 5_4:+7732550 | None:intergenic |
| AGCACATCCAGGAGGAAATC+CGG | 0.445200 | 5_4:-7731154 | Msa0834660:CDS |
| ACAAATACAAACAAGAGTTC+TGG | 0.448646 | 5_4:-7732536 | Msa0834660:CDS |
| TCGAATGAACTAATCTATCT+TGG | 0.450493 | 5_4:-7730419 | Msa0834660:three_prime_UTR |
| TATTCTTCACTGTTGCTTGT+GGG | 0.450494 | 5_4:-7732345 | Msa0834660:CDS |
| GCAAGGGTTAAAGCAGAAAC+TGG | 0.454091 | 5_4:-7732245 | Msa0834660:intron |
| AGATATCTGCTGCTGATTTG+AGG | 0.459637 | 5_4:-7731375 | Msa0834660:CDS |
| ATATTCTTCACTGTTGCTTG+TGG | 0.459868 | 5_4:-7732346 | Msa0834660:CDS |
| CACATTGTGCATCCCAGAAT+AGG | 0.461745 | 5_4:+7731410 | None:intergenic |
| ATATCGTAGGAGTCGCTTTG+TGG | 0.464724 | 5_4:-7730822 | Msa0834660:intron |
| CTATTGTATTTGCCAATGAC+TGG | 0.468151 | 5_4:+7733438 | None:intergenic |
| TATGGCAACCCTCAACTTCA+AGG | 0.473918 | 5_4:-7732714 | Msa0834660:CDS |
| TTATGAAATGGATAACTTCA+AGG | 0.479116 | 5_4:-7732837 | Msa0834660:CDS |
| ATCATACAACCATCCGTGTC+TGG | 0.482747 | 5_4:+7731672 | None:intergenic |
| GGAGATCGTTTCAGAAAGCT+TGG | 0.484098 | 5_4:-7730947 | Msa0834660:CDS |
| GATATCTGCTGCTGATTTGA+GGG | 0.485268 | 5_4:-7731374 | Msa0834660:CDS |
| TACAGACAAGATTTGTTGGT+TGG | 0.490833 | 5_4:-7732665 | Msa0834660:intron |
| TGCTTCACAAATACTTGGGA+TGG | 0.493118 | 5_4:-7732124 | Msa0834660:CDS |
| AGGGTTGCCATAGGAATATC+AGG | 0.493851 | 5_4:+7732725 | None:intergenic |
| TCTTCAAGCAAACAACCTCT+TGG | 0.494853 | 5_4:-7730973 | Msa0834660:CDS |
| TAAGGCAAGATTCCTATTCT+GGG | 0.496810 | 5_4:-7731422 | Msa0834660:CDS |
| ACAAATGCCGGATTTCCTCC+TGG | 0.498432 | 5_4:+7731147 | None:intergenic |
| TTAGTTGTTGACAGTTGAGT+TGG | 0.500396 | 5_4:+7730696 | None:intergenic |
| GTTTATAACATTTAGATACA+AGG | 0.506227 | 5_4:-7731473 | Msa0834660:intron |
| CAAGGTAGCCAATAATGACT+TGG | 0.507975 | 5_4:-7732819 | Msa0834660:CDS |
| CTGATCTGTAATACAAATGC+CGG | 0.511308 | 5_4:+7731135 | None:intergenic |
| GAATGCAAAGACTCCAAAGC+TGG | 0.511333 | 5_4:-7730655 | Msa0834660:CDS |
| AGCTGTTCATAACTCTGATA+AGG | 0.512533 | 5_4:-7731440 | Msa0834660:CDS |
| CTTTGATCTCATCAAATGGA+CGG | 0.512792 | 5_4:+7733517 | None:intergenic |
| TCTGCCAGCAGATGCTGTTG+GGG | 0.520446 | 5_4:-7731950 | Msa0834660:CDS |
| GCTCTGCCAGCAGATGCTGT+TGG | 0.520614 | 5_4:-7731952 | Msa0834660:CDS |
| GACTTTGGGGAAGTTCTGGC+TGG | 0.524174 | 5_4:-7732692 | Msa0834660:CDS |
| CAAGTATTTGTGAAGCAAAG+TGG | 0.529531 | 5_4:+7732130 | None:intergenic |
| TGCATGAAGGTCAGACATAA+CGG | 0.530528 | 5_4:+7730596 | None:intergenic |
| TTTGATCTCATCAAATGGAC+GGG | 0.535946 | 5_4:+7733518 | None:intergenic |
| AAGCAAACAACCTCTTGGAC+TGG | 0.536065 | 5_4:-7730968 | Msa0834660:CDS |
| GAGCATAATTGTTTCAGTAG+AGG | 0.536433 | 5_4:+7730440 | None:intergenic |
| CTTGATAAACTCAGCAACAT+GGG | 0.543563 | 5_4:+7732072 | None:intergenic |
| TCAACTGTCAACAACTAAGC+TGG | 0.543858 | 5_4:-7730691 | Msa0834660:CDS |
| GTTTCAAGATTCTTTAGAAG+AGG | 0.548767 | 5_4:+7731102 | None:intergenic |
| TTTAAAGTGAAAGCACATCC+AGG | 0.549907 | 5_4:-7731165 | Msa0834660:CDS |
| GATACTTTCTCTAAGTTAGA+CGG | 0.552777 | 5_4:-7732299 | Msa0834660:CDS |
| TCTTGATAAACTCAGCAACA+TGG | 0.553202 | 5_4:+7732071 | None:intergenic |
| ACTTTGCTTCACAAATACTT+GGG | 0.553892 | 5_4:-7732128 | Msa0834660:CDS |
| CTGCCAGCAGATGCTGTTGG+GGG | 0.554029 | 5_4:-7731949 | Msa0834660:CDS |
| TATCAGAGTTATGAACAGCT+TGG | 0.559522 | 5_4:+7731443 | None:intergenic |
| CAATAATGACTTGGTTGTGA+AGG | 0.565415 | 5_4:-7732810 | Msa0834660:CDS |
| CTTTCACTCTTAAAGATGCT+AGG | 0.566088 | 5_4:-7732496 | Msa0834660:intron |
| TAAGCTTCATACCTTGGCAA+TGG | 0.567696 | 5_4:+7731571 | None:intergenic |
| TTATTGTGCTCAAACATGCA+AGG | 0.568241 | 5_4:-7732262 | Msa0834660:CDS |
| CATCATAGTTTCATGCATGA+AGG | 0.575445 | 5_4:+7730583 | None:intergenic |
| CCTCAACTTCAAGGACTTTG+GGG | 0.578826 | 5_4:-7732705 | Msa0834660:CDS |
| TTGAAGTTGAGGGTTGCCAT+AGG | 0.586865 | 5_4:+7732716 | None:intergenic |
| TGTCCGTGGATTGGTAAGAC+CGG | 0.587689 | 5_4:+7731230 | None:intergenic |
| AATCTCAGCAAGAGTCATGA+AGG | 0.588783 | 5_4:+7731855 | None:intergenic |
| ATGCACCAAAAGTGTTAGGA+TGG | 0.591610 | 5_4:-7731638 | Msa0834660:CDS |
| TATTGTGCTCAAACATGCAA+GGG | 0.592969 | 5_4:-7732261 | Msa0834660:CDS |
| ACCAAAAGTGTTAGGATGGA+CGG | 0.598957 | 5_4:-7731634 | Msa0834660:CDS |
| AAATTGAATGCTACCAGACA+CGG | 0.603984 | 5_4:-7731685 | Msa0834660:CDS |
| GCACATCTTTAAATGGTGCA+AGG | 0.630018 | 5_4:+7732876 | None:intergenic |
| TTGATGAAACTAAAGATGTG+TGG | 0.633385 | 5_4:-7733491 | Msa0834660:CDS |
| TTGATAAACTCAGCAACATG+GGG | 0.639697 | 5_4:+7732073 | None:intergenic |
| GTTTCAGACTCATTGTAACA+GGG | 0.644562 | 5_4:-7732775 | Msa0834660:CDS |
| GAAGATGGAAGATCATGTTG+AGG | 0.648581 | 5_4:-7733544 | Msa0834660:exon |
| GAAACGATCTCCAGTCCAAG+AGG | 0.656879 | 5_4:+7730958 | None:intergenic |
| ACATCTTGAAATGATTGTGA+AGG | 0.663196 | 5_4:-7733412 | Msa0834660:CDS |
| AGGCCGGTCTTACCAATCCA+CGG | 0.668099 | 5_4:-7731233 | Msa0834660:CDS |
| TCAATGAAAAGCCATTGCCA+AGG | 0.668257 | 5_4:-7731582 | Msa0834660:intron |
| AAAATCTTGAGATCTAATGA+CGG | 0.671912 | 5_4:+7732748 | None:intergenic |
| AGACACGGATGGTTGTATGA+TGG | 0.679172 | 5_4:-7731670 | Msa0834660:CDS |
| TTTCAGACTCATTGTAACAG+GGG | 0.679699 | 5_4:-7732774 | Msa0834660:CDS |
| CTCAGCAAGAGTCATGAAGG+TGG | 0.685837 | 5_4:+7731858 | None:intergenic |
| ATCTTGAGATCTAATGACGG+TGG | 0.694783 | 5_4:+7732751 | None:intergenic |
| AAAGTGAAAGCACATCCAGG+AGG | 0.710260 | 5_4:-7731162 | Msa0834660:CDS |
| ATGTGTGGACTCTTGCTGTG+AGG | 0.724203 | 5_4:-7733476 | Msa0834660:CDS |
| AATGATTGTGAAGGATGCCG+AGG | 0.738086 | 5_4:-7733403 | Msa0834660:intron |
| TGAATGCTACCAGACACGGA+TGG | 0.740266 | 5_4:-7731681 | Msa0834660:CDS |
| AAAAGTGTTAGGATGGACGG+TGG | 0.747740 | 5_4:-7731631 | Msa0834660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATTGAAATTTACATT+TGG | + | chr5_4:7731059-7731078 | None:intergenic | 10.0% |
| !!! | TTAACTGTTAATTTTATTTA+TGG | - | chr5_4:7732049-7732068 | Msa0834660:intron | 10.0% |
| !!! | TAACTGTTAATTTTATTTAT+GGG | - | chr5_4:7732050-7732069 | Msa0834660:intron | 10.0% |
| !!! | TACAAATATTTAACATATTT+TGG | + | chr5_4:7733506-7733525 | None:intergenic | 10.0% |
| !! | ATAAGAAGTAAATGAAAAAT+TGG | + | chr5_4:7730459-7730478 | None:intergenic | 15.0% |
| !! | GGAGAAAAAAATAATTTATA+TGG | + | chr5_4:7730789-7730808 | None:intergenic | 15.0% |
| !!! | TCTGTATTCTTTTAATTAAA+AGG | + | chr5_4:7730943-7730962 | None:intergenic | 15.0% |
| !!! | GTTATATTTTATGATTTTCT+GGG | - | chr5_4:7731447-7731466 | Msa0834660:CDS | 15.0% |
| !!! | TTATATTTTATGATTTTCTG+GGG | - | chr5_4:7731448-7731467 | Msa0834660:CDS | 15.0% |
| !!! | CAATTTTTTTATTTTTGCTA+CGG | + | chr5_4:7732346-7732365 | None:intergenic | 15.0% |
| !! | ATATGTAATATATATGGAAA+TGG | + | chr5_4:7732539-7732558 | None:intergenic | 15.0% |
| !! | TGAAAGATATGTAATATATA+TGG | + | chr5_4:7732545-7732564 | None:intergenic | 15.0% |
| !! | ATCTAAATGTTATAAACAAT+TGG | + | chr5_4:7732569-7732588 | None:intergenic | 15.0% |
| !! | ATGAAAATTTATGAGATTAA+AGG | + | chr5_4:7733045-7733064 | None:intergenic | 15.0% |
| !!! | TTTTAAGTTATGATGTTGTT+TGG | - | chr5_4:7730431-7730450 | Msa0834660:three_prime_UTR | 20.0% |
| !!! | AAATTGTTTTCCATTTCTAT+AGG | - | chr5_4:7730715-7730734 | Msa0834660:CDS | 20.0% |
| !!! | AAATAATTTGCCTATAGAAA+TGG | + | chr5_4:7730728-7730747 | None:intergenic | 20.0% |
| !! | TATATGGAACTTAGTTAATA+TGG | + | chr5_4:7730773-7730792 | None:intergenic | 20.0% |
| !!! | TTGAAATTTACATTTGGTTT+TGG | + | chr5_4:7731053-7731072 | None:intergenic | 20.0% |
| !!! | GGTTATATTTTATGATTTTC+TGG | - | chr5_4:7731446-7731465 | Msa0834660:CDS | 20.0% |
| !!! | AATATTCTAAGAATTCAAGA+TGG | + | chr5_4:7732031-7732050 | None:intergenic | 20.0% |
| !! | TGAGATTAATAATGTCAAAA+AGG | - | chr5_4:7732206-7732225 | Msa0834660:intron | 20.0% |
| !! | TGATCACTTTACAATATAAA+TGG | - | chr5_4:7732252-7732271 | Msa0834660:CDS | 20.0% |
| !! | GATCACTTTACAATATAAAT+GGG | - | chr5_4:7732253-7732272 | Msa0834660:CDS | 20.0% |
| !! | GTTTATAACATTTAGATACA+AGG | - | chr5_4:7732572-7732591 | Msa0834660:intron | 20.0% |
| !!! | AATCTCATAAATTTTCATAC+AGG | - | chr5_4:7733047-7733066 | Msa0834660:intron | 20.0% |
| !! | TTTGGTTAAAAACAAAAAAG+AGG | + | chr5_4:7733488-7733507 | None:intergenic | 20.0% |
| ! | ATTTCTTTGATCTCATCAAA+TGG | + | chr5_4:7730535-7730554 | None:intergenic | 25.0% |
| ! | GTCACTAAAAAATTATACCT+CGG | + | chr5_4:7730662-7730681 | None:intergenic | 25.0% |
| ! | GAGTATAATTCATTCTCATA+AGG | - | chr5_4:7730961-7730980 | Msa0834660:CDS | 25.0% |
| ! | CTTGAACAATACTTATGAAA+TGG | - | chr5_4:7731196-7731215 | Msa0834660:CDS | 25.0% |
| ! | TTATGAAATGGATAACTTCA+AGG | - | chr5_4:7731208-7731227 | Msa0834660:CDS | 25.0% |
| ! | AAAATCTTGAGATCTAATGA+CGG | + | chr5_4:7731300-7731319 | None:intergenic | 25.0% |
| ! | TAAATACAGACAAGATTTGT+TGG | - | chr5_4:7731376-7731395 | Msa0834660:CDS | 25.0% |
| !!! | TTAATTTGTCAGAGTTTTGT+TGG | - | chr5_4:7731425-7731444 | Msa0834660:CDS | 25.0% |
| !! | TGTTTGTATTTGTTACTTCT+TGG | + | chr5_4:7731502-7731521 | None:intergenic | 25.0% |
| ! | GGTAAATTCATTTGCAATTA+TGG | - | chr5_4:7731570-7731589 | Msa0834660:intron | 25.0% |
| !! | TTGCTTTATGGTTTATTTCT+TGG | - | chr5_4:7731639-7731658 | Msa0834660:CDS | 25.0% |
| ! | AATTGTAAGAGTAATGAAGT+TGG | + | chr5_4:7732296-7732315 | None:intergenic | 25.0% |
| ! | AAAATATAAGCTTCATACCT+TGG | + | chr5_4:7732483-7732502 | None:intergenic | 25.0% |
| !!! | GCTTATATTTTGACTCAATT+TGG | - | chr5_4:7732492-7732511 | Msa0834660:intron | 25.0% |
| !! | ACAATTGATCAAGTACTTTT+GGG | + | chr5_4:7732843-7732862 | None:intergenic | 25.0% |
| !! | AACAATTGATCAAGTACTTT+TGG | + | chr5_4:7732844-7732863 | None:intergenic | 25.0% |
| !!! | TTTGTTAGAGGTATTGTATA+TGG | - | chr5_4:7732975-7732994 | Msa0834660:intron | 25.0% |
| !!! | TTGTTAGAGGTATTGTATAT+GGG | - | chr5_4:7732976-7732995 | Msa0834660:intron | 25.0% |
| !! | AAGATATGTTTTCAGAATCA+GGG | + | chr5_4:7733309-7733328 | None:intergenic | 25.0% |
| !! | CTTGAATCTTAAGTATTTTG+TGG | - | chr5_4:7733579-7733598 | Msa0834660:five_prime_UTR | 25.0% |
| TTGATGAAACTAAAGATGTG+TGG | - | chr5_4:7730554-7730573 | Msa0834660:three_prime_UTR | 30.0% | |
| ACATCTTGAAATGATTGTGA+AGG | - | chr5_4:7730633-7730652 | Msa0834660:exon | 30.0% | |
| AACAAAATAAGCGACTTTGA+TGG | + | chr5_4:7730828-7730847 | None:intergenic | 30.0% | |
| !! | TTTTGGTAGTTTTCATGGAT+AGG | + | chr5_4:7731036-7731055 | None:intergenic | 30.0% |
| !!! | TTTGGTTTTGGTAGTTTTCA+TGG | + | chr5_4:7731041-7731060 | None:intergenic | 30.0% |
| TCGTATAAATGATGTGATTC+AGG | + | chr5_4:7731107-7731126 | None:intergenic | 30.0% | |
| ACATCATTTATACGATTCAC+AGG | - | chr5_4:7731112-7731131 | Msa0834660:CDS | 30.0% | |
| CATCATTTATACGATTCACA+GGG | - | chr5_4:7731113-7731132 | Msa0834660:CDS | 30.0% | |
| ! | AGATTTTCCTGATATTCCTA+TGG | - | chr5_4:7731313-7731332 | Msa0834660:intron | 30.0% |
| ! | TGTATTTGTTACTTCTTGGA+AGG | + | chr5_4:7731498-7731517 | None:intergenic | 30.0% |
| ACAAATACAAACAAGAGTTC+TGG | - | chr5_4:7731509-7731528 | Msa0834660:intron | 30.0% | |
| AAACCATAAAGCAATAGTGA+GGG | + | chr5_4:7731633-7731652 | None:intergenic | 30.0% | |
| TAAACCATAAAGCAATAGTG+AGG | + | chr5_4:7731634-7731653 | None:intergenic | 30.0% | |
| ! | CTTTATGGTTTATTTCTTGG+TGG | - | chr5_4:7731642-7731661 | Msa0834660:CDS | 30.0% |
| GATACTTTCTCTAAGTTAGA+CGG | - | chr5_4:7731746-7731765 | Msa0834660:intron | 30.0% | |
| ACTTTGCTTCACAAATACTT+GGG | - | chr5_4:7731917-7731936 | Msa0834660:CDS | 30.0% | |
| GGATTGTAATTTGATGCATT+TGG | + | chr5_4:7732518-7732537 | None:intergenic | 30.0% | |
| AATAGAGTGAAATCAGAAGT+GGG | + | chr5_4:7732742-7732761 | None:intergenic | 30.0% | |
| AAATAGAGTGAAATCAGAAG+TGG | + | chr5_4:7732743-7732762 | None:intergenic | 30.0% | |
| TCAATTGTTGTCTGAAAAGA+AGG | - | chr5_4:7732855-7732874 | Msa0834660:CDS | 30.0% | |
| ! | GTTTCAAGATTCTTTAGAAG+AGG | + | chr5_4:7732946-7732965 | None:intergenic | 30.0% |
| AAGAATCTTGAAACACAGTT+TGG | - | chr5_4:7732952-7732971 | Msa0834660:intron | 30.0% | |
| TAAACCATTGCTTATATCGT+AGG | - | chr5_4:7733210-7733229 | Msa0834660:intron | 30.0% | |
| GGAGTAGAAGAAGTTATATT+GGG | + | chr5_4:7733259-7733278 | None:intergenic | 30.0% | |
| TGGAGTAGAAGAAGTTATAT+TGG | + | chr5_4:7733260-7733279 | None:intergenic | 30.0% | |
| ! | GAAGATATGTTTTCAGAATC+AGG | + | chr5_4:7733310-7733329 | None:intergenic | 30.0% |
| TCGAATGAACTAATCTATCT+TGG | - | chr5_4:7733626-7733645 | Msa0834660:five_prime_UTR | 30.0% | |
| ! | CTGTTGTTTGTTTCAGAAGA+TGG | - | chr5_4:7730486-7730505 | Msa0834660:three_prime_UTR | 35.0% |
| TTTGATCTCATCAAATGGAC+GGG | + | chr5_4:7730530-7730549 | None:intergenic | 35.0% | |
| CTTTGATCTCATCAAATGGA+CGG | + | chr5_4:7730531-7730550 | None:intergenic | 35.0% | |
| CTATTGTATTTGCCAATGAC+TGG | + | chr5_4:7730610-7730629 | None:intergenic | 35.0% | |
| TGATGGAATCAGTTCAGTTA+CGG | + | chr5_4:7730811-7730830 | None:intergenic | 35.0% | |
| !! | CCATTTTGAAGACAAATCCA+CGG | - | chr5_4:7730990-7731009 | Msa0834660:intron | 35.0% |
| ! | AATGTCTTTCTTTGTTTCCG+TGG | + | chr5_4:7731010-7731029 | None:intergenic | 35.0% |
| AAGTGCAGCACATCTTTAAA+TGG | + | chr5_4:7731179-7731198 | None:intergenic | 35.0% | |
| CTTCACAACCAAGTCATTAT+TGG | + | chr5_4:7731237-7731256 | None:intergenic | 35.0% | |
| !! | CAATAATGACTTGGTTGTGA+AGG | - | chr5_4:7731235-7731254 | Msa0834660:intron | 35.0% |
| GTTTCAGACTCATTGTAACA+GGG | - | chr5_4:7731270-7731289 | Msa0834660:intron | 35.0% | |
| TTTCAGACTCATTGTAACAG+GGG | - | chr5_4:7731271-7731290 | Msa0834660:intron | 35.0% | |
| !! | TACAGACAAGATTTGTTGGT+TGG | - | chr5_4:7731380-7731399 | Msa0834660:CDS | 35.0% |
| CTTTCACTCTTAAAGATGCT+AGG | - | chr5_4:7731549-7731568 | Msa0834660:intron | 35.0% | |
| TTTCCCTCACTATTGCTTTA+TGG | - | chr5_4:7731627-7731646 | Msa0834660:CDS | 35.0% | |
| CAAGCAACAGTGAAGAATAT+TGG | + | chr5_4:7731699-7731718 | None:intergenic | 35.0% | |
| ! | ATATTCTTCACTGTTGCTTG+TGG | - | chr5_4:7731699-7731718 | Msa0834660:CDS | 35.0% |
| ! | TATTCTTCACTGTTGCTTGT+GGG | - | chr5_4:7731700-7731719 | Msa0834660:CDS | 35.0% |
| !! | GAAAGTATCAGCACATAGTT+TGG | + | chr5_4:7731735-7731754 | None:intergenic | 35.0% |
| TTATTGTGCTCAAACATGCA+AGG | - | chr5_4:7731783-7731802 | Msa0834660:intron | 35.0% | |
| TATTGTGCTCAAACATGCAA+GGG | - | chr5_4:7731784-7731803 | Msa0834660:intron | 35.0% | |
| CAAGTATTTGTGAAGCAAAG+TGG | + | chr5_4:7731918-7731937 | None:intergenic | 35.0% | |
| CACTTTGCTTCACAAATACT+TGG | - | chr5_4:7731916-7731935 | Msa0834660:CDS | 35.0% | |
| TTGATAAACTCAGCAACATG+GGG | + | chr5_4:7731975-7731994 | None:intergenic | 35.0% | |
| CTTGATAAACTCAGCAACAT+GGG | + | chr5_4:7731976-7731995 | None:intergenic | 35.0% | |
| TCTTGATAAACTCAGCAACA+TGG | + | chr5_4:7731977-7731996 | None:intergenic | 35.0% | |
| TGAAGTTGGCATGAAACATA+AGG | + | chr5_4:7732282-7732301 | None:intergenic | 35.0% | |
| !! | CTCTTACAATTTGCTATTGC+AGG | - | chr5_4:7732305-7732324 | Msa0834660:CDS | 35.0% |
| ! | TTTTGCTACGGTAACACATA+AGG | + | chr5_4:7732334-7732353 | None:intergenic | 35.0% |
| AAATTGAATGCTACCAGACA+CGG | - | chr5_4:7732360-7732379 | Msa0834660:intron | 35.0% | |
| TATCAGAGTTATGAACAGCT+TGG | + | chr5_4:7732605-7732624 | None:intergenic | 35.0% | |
| AGCTGTTCATAACTCTGATA+AGG | - | chr5_4:7732605-7732624 | Msa0834660:intron | 35.0% | |
| ATAAGGCAAGATTCCTATTC+TGG | - | chr5_4:7732622-7732641 | Msa0834660:intron | 35.0% | |
| TAAGGCAAGATTCCTATTCT+GGG | - | chr5_4:7732623-7732642 | Msa0834660:intron | 35.0% | |
| GTCATTGCCAAACATAATGT+AGG | - | chr5_4:7732792-7732811 | Msa0834660:CDS | 35.0% | |
| ! | TTTAAAGTGAAAGCACATCC+AGG | - | chr5_4:7732880-7732899 | Msa0834660:CDS | 35.0% |
| CTGATCTGTAATACAAATGC+CGG | + | chr5_4:7732913-7732932 | None:intergenic | 35.0% | |
| !! | AACACAGTTTGGTTTGTTAG+AGG | - | chr5_4:7732963-7732982 | Msa0834660:intron | 35.0% |
| ! | GTCATCTAAGGAAAGTCTTT+TGG | + | chr5_4:7733287-7733306 | None:intergenic | 35.0% |
| TTAGTTGTTGACAGTTGAGT+TGG | + | chr5_4:7733352-7733371 | None:intergenic | 35.0% | |
| ! | TTTGGAGTCTTTGCATTCTT+TGG | + | chr5_4:7733388-7733407 | None:intergenic | 35.0% |
| CATCATAGTTTCATGCATGA+AGG | + | chr5_4:7733465-7733484 | None:intergenic | 35.0% | |
| ! | TAGTTTTCATCAGGCTGAAT+TGG | + | chr5_4:7733536-7733555 | None:intergenic | 35.0% |
| !!! | AGCAGAAGTTAGTTTTCATC+AGG | + | chr5_4:7733545-7733564 | None:intergenic | 35.0% |
| GAGCATAATTGTTTCAGTAG+AGG | + | chr5_4:7733608-7733627 | None:intergenic | 35.0% | |
| GAAGATGGAAGATCATGTTG+AGG | - | chr5_4:7730501-7730520 | Msa0834660:three_prime_UTR | 40.0% | |
| CTGTGAGGATTGTTGATCTT+TGG | - | chr5_4:7730584-7730603 | Msa0834660:three_prime_UTR | 40.0% | |
| GATGGAATCAGTTCAGTTAC+GGG | + | chr5_4:7730810-7730829 | None:intergenic | 40.0% | |
| CCGTGGATTTGTCTTCAAAA+TGG | + | chr5_4:7730993-7731012 | None:intergenic | 40.0% | |
| GCACATCTTTAAATGGTGCA+AGG | + | chr5_4:7731172-7731191 | None:intergenic | 40.0% | |
| CAAGGTAGCCAATAATGACT+TGG | - | chr5_4:7731226-7731245 | Msa0834660:CDS | 40.0% | |
| CGTTTCAGACTCATTGTAAC+AGG | - | chr5_4:7731269-7731288 | Msa0834660:intron | 40.0% | |
| ATCTTGAGATCTAATGACGG+TGG | + | chr5_4:7731297-7731316 | None:intergenic | 40.0% | |
| !! | ATGATTTTCTGGGGAATGTG+TGG | - | chr5_4:7731457-7731476 | Msa0834660:CDS | 40.0% |
| GCATGATATGTGTGTGGAAA+TGG | + | chr5_4:7731885-7731904 | None:intergenic | 40.0% | |
| TTTCCACACACATATCATGC+AGG | - | chr5_4:7731885-7731904 | Msa0834660:CDS | 40.0% | |
| TTCCACACACATATCATGCA+GGG | - | chr5_4:7731886-7731905 | Msa0834660:CDS | 40.0% | |
| TGCTTCACAAATACTTGGGA+TGG | - | chr5_4:7731921-7731940 | Msa0834660:CDS | 40.0% | |
| CTGCGAACTTTGACTGAATT+GGG | + | chr5_4:7732136-7732155 | None:intergenic | 40.0% | |
| ACTGCGAACTTTGACTGAAT+TGG | + | chr5_4:7732137-7732156 | None:intergenic | 40.0% | |
| AATCTCAGCAAGAGTCATGA+AGG | + | chr5_4:7732193-7732212 | None:intergenic | 40.0% | |
| !! | ACGAATGCACCAAAAGTGTT+AGG | - | chr5_4:7732403-7732422 | Msa0834660:intron | 40.0% |
| !! | ATGCACCAAAAGTGTTAGGA+TGG | - | chr5_4:7732407-7732426 | Msa0834660:intron | 40.0% |
| !! | ACCAAAAGTGTTAGGATGGA+CGG | - | chr5_4:7732411-7732430 | Msa0834660:intron | 40.0% |
| TCAATGAAAAGCCATTGCCA+AGG | - | chr5_4:7732463-7732482 | Msa0834660:intron | 40.0% | |
| TAAGCTTCATACCTTGGCAA+TGG | + | chr5_4:7732477-7732496 | None:intergenic | 40.0% | |
| !! | AGATATCTGCTGCTGATTTG+AGG | - | chr5_4:7732670-7732689 | Msa0834660:CDS | 40.0% |
| !! | GATATCTGCTGCTGATTTGA+GGG | - | chr5_4:7732671-7732690 | Msa0834660:CDS | 40.0% |
| ! | TTTGAGGGCACACATGATTA+AGG | - | chr5_4:7732686-7732705 | Msa0834660:CDS | 40.0% |
| CAATGACAGTTCGAACATAC+AGG | + | chr5_4:7732779-7732798 | None:intergenic | 40.0% | |
| TTGCCAAACATAATGTAGGC+CGG | - | chr5_4:7732796-7732815 | Msa0834660:CDS | 40.0% | |
| TCTTCAAGCAAACAACCTCT+TGG | - | chr5_4:7733072-7733091 | Msa0834660:intron | 40.0% | |
| GACTCCTACGATATAAGCAA+TGG | + | chr5_4:7733217-7733236 | None:intergenic | 40.0% | |
| ! | TCTAAGGAAAGTCTTTTGGC+TGG | + | chr5_4:7733283-7733302 | None:intergenic | 40.0% |
| TTCAGAATCAGGGTCATCTA+AGG | + | chr5_4:7733299-7733318 | None:intergenic | 40.0% | |
| ! | TGAGTTGGCTGAAGATCTAT+TGG | + | chr5_4:7733337-7733356 | None:intergenic | 40.0% |
| TCAACTGTCAACAACTAAGC+TGG | - | chr5_4:7733354-7733373 | Msa0834660:intron | 40.0% | |
| TGCATGAAGGTCAGACATAA+CGG | + | chr5_4:7733452-7733471 | None:intergenic | 40.0% | |
| GTTGATCTTTGGCCAGTCAT+TGG | - | chr5_4:7730595-7730614 | Msa0834660:three_prime_UTR | 45.0% | |
| AATGATTGTGAAGGATGCCG+AGG | - | chr5_4:7730642-7730661 | Msa0834660:exon | 45.0% | |
| AGGGTTGCCATAGGAATATC+AGG | + | chr5_4:7731323-7731342 | None:intergenic | 45.0% | |
| TTGAAGTTGAGGGTTGCCAT+AGG | + | chr5_4:7731332-7731351 | None:intergenic | 45.0% | |
| TATGGCAACCCTCAACTTCA+AGG | - | chr5_4:7731331-7731350 | Msa0834660:intron | 45.0% | |
| ACCCTCAACTTCAAGGACTT+TGG | - | chr5_4:7731338-7731357 | Msa0834660:intron | 45.0% | |
| CCCAAAGTCCTTGAAGTTGA+GGG | + | chr5_4:7731342-7731361 | None:intergenic | 45.0% | |
| CCCTCAACTTCAAGGACTTT+GGG | - | chr5_4:7731339-7731358 | Msa0834660:intron | 45.0% | |
| CCTCAACTTCAAGGACTTTG+GGG | - | chr5_4:7731340-7731359 | Msa0834660:intron | 45.0% | |
| GAATGTGTGGCAGATGCTAT+TGG | - | chr5_4:7731470-7731489 | Msa0834660:intron | 45.0% | |
| GCAAGGGTTAAAGCAGAAAC+TGG | - | chr5_4:7731800-7731819 | Msa0834660:intron | 45.0% | |
| ATCCCTGCATGATATGTGTG+TGG | + | chr5_4:7731891-7731910 | None:intergenic | 45.0% | |
| GTGATCATGCTGAAGAGTGA+AGG | + | chr5_4:7732239-7732258 | None:intergenic | 45.0% | |
| ATCATACAACCATCCGTGTC+TGG | + | chr5_4:7732376-7732395 | None:intergenic | 45.0% | |
| AGACACGGATGGTTGTATGA+TGG | - | chr5_4:7732375-7732394 | Msa0834660:intron | 45.0% | |
| ! | ACCGTCCATCCTAACACTTT+TGG | + | chr5_4:7732415-7732434 | None:intergenic | 45.0% |
| !! | AAAAGTGTTAGGATGGACGG+TGG | - | chr5_4:7732414-7732433 | Msa0834660:intron | 45.0% |
| CACATTGTGCATCCCAGAAT+AGG | + | chr5_4:7732638-7732657 | None:intergenic | 45.0% | |
| TGAAATCAGAAGTGGGTGGT+AGG | + | chr5_4:7732735-7732754 | None:intergenic | 45.0% | |
| AGAGTGAAATCAGAAGTGGG+TGG | + | chr5_4:7732739-7732758 | None:intergenic | 45.0% | |
| AGACCGGCCTACATTATGTT+TGG | + | chr5_4:7732802-7732821 | None:intergenic | 45.0% | |
| !! | TTTTGGGTATGTCCGTGGAT+TGG | + | chr5_4:7732827-7732846 | None:intergenic | 45.0% |
| !! | AGTACTTTTGGGTATGTCCG+TGG | + | chr5_4:7732832-7732851 | None:intergenic | 45.0% |
| ! | AAAGTGAAAGCACATCCAGG+AGG | - | chr5_4:7732883-7732902 | Msa0834660:CDS | 45.0% |
| AAGCAAACAACCTCTTGGAC+TGG | - | chr5_4:7733077-7733096 | Msa0834660:intron | 45.0% | |
| GGAGATCGTTTCAGAAAGCT+TGG | - | chr5_4:7733098-7733117 | Msa0834660:intron | 45.0% | |
| ! | ATATCGTAGGAGTCGCTTTG+TGG | - | chr5_4:7733223-7733242 | Msa0834660:intron | 45.0% |
| !! | AAGGAAAGTCTTTTGGCTGG+TGG | + | chr5_4:7733280-7733299 | None:intergenic | 45.0% |
| GAATGCAAAGACTCCAAAGC+TGG | - | chr5_4:7733390-7733409 | Msa0834660:intron | 45.0% | |
| ! | ATGTGTGGACTCTTGCTGTG+AGG | - | chr5_4:7730569-7730588 | Msa0834660:three_prime_UTR | 50.0% |
| CCCCAAAGTCCTTGAAGTTG+AGG | + | chr5_4:7731343-7731362 | None:intergenic | 50.0% | |
| ! | CAAGGACTTTGGGGAAGTTC+TGG | - | chr5_4:7731349-7731368 | Msa0834660:intron | 50.0% |
| TCAGCAACATGGGGCAATTC+TGG | + | chr5_4:7731966-7731985 | None:intergenic | 50.0% | |
| CTCAGCAAGAGTCATGAAGG+TGG | + | chr5_4:7732190-7732209 | None:intergenic | 50.0% | |
| TGAATGCTACCAGACACGGA+TGG | - | chr5_4:7732364-7732383 | Msa0834660:intron | 50.0% | |
| GTGGTAGGAAATGAACGCAG+AGG | + | chr5_4:7732720-7732739 | None:intergenic | 50.0% | |
| !! | TGTCCGTGGATTGGTAAGAC+CGG | + | chr5_4:7732818-7732837 | None:intergenic | 50.0% |
| AGCACATCCAGGAGGAAATC+CGG | - | chr5_4:7732891-7732910 | Msa0834660:CDS | 50.0% | |
| ACAAATGCCGGATTTCCTCC+TGG | + | chr5_4:7732901-7732920 | None:intergenic | 50.0% | |
| GAAACGATCTCCAGTCCAAG+AGG | + | chr5_4:7733090-7733109 | None:intergenic | 50.0% | |
| AACATCTAGCGCTCCAGCTT+TGG | + | chr5_4:7733406-7733425 | None:intergenic | 50.0% | |
| ! | AAGCTGGAGCGCTAGATGTT+TGG | - | chr5_4:7733406-7733425 | Msa0834660:CDS | 50.0% |
| ! | GACTTTGGGGAAGTTCTGGC+TGG | - | chr5_4:7731353-7731372 | Msa0834660:intron | 55.0% |
| CTCTGCCAGCAGATGCTGTT+GGG | - | chr5_4:7732094-7732113 | Msa0834660:CDS | 55.0% | |
| TCTGCCAGCAGATGCTGTTG+GGG | - | chr5_4:7732095-7732114 | Msa0834660:CDS | 55.0% | |
| AGGCCGGTCTTACCAATCCA+CGG | - | chr5_4:7732812-7732831 | Msa0834660:CDS | 55.0% | |
| GCTCTGCCAGCAGATGCTGT+TGG | - | chr5_4:7732093-7732112 | Msa0834660:CDS | 60.0% | |
| CTGCCAGCAGATGCTGTTGG+GGG | - | chr5_4:7732096-7732115 | Msa0834660:CDS | 60.0% | |
| GATCCCCCAACAGCATCTGC+TGG | + | chr5_4:7732102-7732121 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 7730401 | 7733666 | 7730401 | ID=Msa0834660;Name=Msa0834660 |
| chr5_4 | mRNA | 7730401 | 7733666 | 7730401 | ID=Msa0834660-mRNA-1;Parent=Msa0834660;Name=Msa0834660-mRNA-1;_AED=0.13;_eAED=0.13;_QI=104|1|1|1|1|1|11|246|528 |
| chr5_4 | exon | 7730401 | 7730835 | 7730401 | ID=Msa0834660-mRNA-1:exon:3409;Parent=Msa0834660-mRNA-1 |
| chr5_4 | exon | 7730927 | 7730998 | 7730927 | ID=Msa0834660-mRNA-1:exon:3408;Parent=Msa0834660-mRNA-1 |
| chr5_4 | exon | 7731083 | 7731253 | 7731083 | ID=Msa0834660-mRNA-1:exon:3407;Parent=Msa0834660-mRNA-1 |
| chr5_4 | exon | 7731360 | 7731480 | 7731360 | ID=Msa0834660-mRNA-1:exon:3406;Parent=Msa0834660-mRNA-1 |
| chr5_4 | exon | 7731583 | 7731740 | 7731583 | ID=Msa0834660-mRNA-1:exon:3405;Parent=Msa0834660-mRNA-1 |
| chr5_4 | exon | 7731840 | 7731981 | 7731840 | ID=Msa0834660-mRNA-1:exon:3404;Parent=Msa0834660-mRNA-1 |
| chr5_4 | exon | 7732070 | 7732160 | 7732070 | ID=Msa0834660-mRNA-1:exon:3403;Parent=Msa0834660-mRNA-1 |
| chr5_4 | exon | 7732246 | 7732373 | 7732246 | ID=Msa0834660-mRNA-1:exon:3402;Parent=Msa0834660-mRNA-1 |
| chr5_4 | exon | 7732497 | 7732584 | 7732497 | ID=Msa0834660-mRNA-1:exon:3401;Parent=Msa0834660-mRNA-1 |
| chr5_4 | exon | 7732666 | 7732933 | 7732666 | ID=Msa0834660-mRNA-1:exon:3400;Parent=Msa0834660-mRNA-1 |
| chr5_4 | exon | 7733404 | 7733666 | 7733404 | ID=Msa0834660-mRNA-1:exon:3399;Parent=Msa0834660-mRNA-1 |
| chr5_4 | five_prime_UTR | 7733563 | 7733666 | 7733563 | ID=Msa0834660-mRNA-1:five_prime_utr;Parent=Msa0834660-mRNA-1 |
| chr5_4 | CDS | 7733404 | 7733562 | 7733404 | ID=Msa0834660-mRNA-1:cds;Parent=Msa0834660-mRNA-1 |
| chr5_4 | CDS | 7732666 | 7732933 | 7732666 | ID=Msa0834660-mRNA-1:cds;Parent=Msa0834660-mRNA-1 |
| chr5_4 | CDS | 7732497 | 7732584 | 7732497 | ID=Msa0834660-mRNA-1:cds;Parent=Msa0834660-mRNA-1 |
| chr5_4 | CDS | 7732246 | 7732373 | 7732246 | ID=Msa0834660-mRNA-1:cds;Parent=Msa0834660-mRNA-1 |
| chr5_4 | CDS | 7732070 | 7732160 | 7732070 | ID=Msa0834660-mRNA-1:cds;Parent=Msa0834660-mRNA-1 |
| chr5_4 | CDS | 7731840 | 7731981 | 7731840 | ID=Msa0834660-mRNA-1:cds;Parent=Msa0834660-mRNA-1 |
| chr5_4 | CDS | 7731583 | 7731740 | 7731583 | ID=Msa0834660-mRNA-1:cds;Parent=Msa0834660-mRNA-1 |
| chr5_4 | CDS | 7731360 | 7731480 | 7731360 | ID=Msa0834660-mRNA-1:cds;Parent=Msa0834660-mRNA-1 |
| chr5_4 | CDS | 7731083 | 7731253 | 7731083 | ID=Msa0834660-mRNA-1:cds;Parent=Msa0834660-mRNA-1 |
| chr5_4 | CDS | 7730927 | 7730998 | 7730927 | ID=Msa0834660-mRNA-1:cds;Parent=Msa0834660-mRNA-1 |
| chr5_4 | CDS | 7730647 | 7730835 | 7730647 | ID=Msa0834660-mRNA-1:cds;Parent=Msa0834660-mRNA-1 |
| chr5_4 | three_prime_UTR | 7730401 | 7730646 | 7730401 | ID=Msa0834660-mRNA-1:three_prime_utr;Parent=Msa0834660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
