Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188070 | sp|Q9LES3|AI5L2_ARATH | 54.426 | 305 | 112 | 8 | 23 | 322 | 15 | 297 | 2.87e-88 | 269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188070 | G7L6Z1 | 92.857 | 322 | 14 | 1 | 1 | 322 | 1 | 313 | 0.0 | 593 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1188070 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012040 | Msa1188070 | 0.809163 | 2.166842e-50 | -8.615850e-47 |
| Msa0015390 | Msa1188070 | 0.811749 | 5.991798e-51 | -8.615850e-47 |
| Msa0052640 | Msa1188070 | 0.804023 | 2.635697e-49 | -8.615850e-47 |
| Msa0052770 | Msa1188070 | 0.814862 | 1.241271e-51 | -8.615850e-47 |
| Msa0115270 | Msa1188070 | 0.807738 | 4.366186e-50 | -8.615850e-47 |
| Msa0119850 | Msa1188070 | 0.806328 | 8.678616e-50 | -8.615850e-47 |
| Msa0610430 | Msa1188070 | 0.834095 | 3.653391e-56 | -8.615850e-47 |
| Msa0647450 | Msa1188070 | -0.801373 | 9.284481e-49 | -8.615850e-47 |
| Msa0660490 | Msa1188070 | 0.803208 | 3.890171e-49 | -8.615850e-47 |
| Msa0661190 | Msa1188070 | -0.804024 | 2.634100e-49 | -8.615850e-47 |
| Msa0663920 | Msa1188070 | 0.823771 | 1.157328e-53 | -8.615850e-47 |
| Msa0692830 | Msa1188070 | 0.817303 | 3.536219e-52 | -8.615850e-47 |
| Msa0692950 | Msa1188070 | 0.832395 | 9.687432e-56 | -8.615850e-47 |
| Msa0716840 | Msa1188070 | 0.800197 | 1.613635e-48 | -8.615850e-47 |
| Msa0743720 | Msa1188070 | 0.823982 | 1.032893e-53 | -8.615850e-47 |
| Msa0771720 | Msa1188070 | 0.803516 | 3.358402e-49 | -8.615850e-47 |
| Msa0807470 | Msa1188070 | 0.801029 | 1.091906e-48 | -8.615850e-47 |
| Msa0808270 | Msa1188070 | 0.800701 | 1.273947e-48 | -8.615850e-47 |
| Msa0824680 | Msa1188070 | 0.801408 | 9.132639e-49 | -8.615850e-47 |
| Msa0834660 | Msa1188070 | 0.801895 | 7.255710e-49 | -8.615850e-47 |
| Msa0128020 | Msa1188070 | 0.809653 | 1.701186e-50 | -8.615850e-47 |
| Msa0160550 | Msa1188070 | 0.829491 | 4.998380e-55 | -8.615850e-47 |
| Msa0372340 | Msa1188070 | 0.806353 | 8.572055e-50 | -8.615850e-47 |
| Msa0434180 | Msa1188070 | 0.802287 | 6.026831e-49 | -8.615850e-47 |
| Msa0436490 | Msa1188070 | -0.804897 | 1.732195e-49 | -8.615850e-47 |
| Msa0993290 | Msa1188070 | 0.801547 | 8.550617e-49 | -8.615850e-47 |
| Msa0999430 | Msa1188070 | 0.806481 | 8.057540e-50 | -8.615850e-47 |
| Msa1014540 | Msa1188070 | 0.804836 | 1.784159e-49 | -8.615850e-47 |
| Msa1051200 | Msa1188070 | 0.809898 | 1.506800e-50 | -8.615850e-47 |
| Msa1087710 | Msa1188070 | 0.821982 | 3.022357e-53 | -8.615850e-47 |
| Msa0344830 | Msa1188070 | 0.807978 | 3.881162e-50 | -8.615850e-47 |
| Msa0358170 | Msa1188070 | 0.814666 | 1.371660e-51 | -8.615850e-47 |
| Msa1173140 | Msa1188070 | 0.813389 | 2.623747e-51 | -8.615850e-47 |
| Msa1174040 | Msa1188070 | 0.800660 | 1.298312e-48 | -8.615850e-47 |
| Msa1188070 | Msa1204090 | 0.801177 | 1.018375e-48 | -8.615850e-47 |
| Msa1188070 | Msa1293510 | 0.810868 | 9.303687e-51 | -8.615850e-47 |
| Msa1188070 | Msa1322490 | 0.979992 | 3.341430e-149 | -8.615850e-47 |
| Msa1188070 | Msa1386780 | 0.805696 | 1.178469e-49 | -8.615850e-47 |
| Msa1188070 | Msa1419800 | -0.800810 | 1.210339e-48 | -8.615850e-47 |
| Msa1188070 | Msa1451550 | 0.810532 | 1.100085e-50 | -8.615850e-47 |
| Msa1188070 | Msa1454480 | 0.821812 | 3.308561e-53 | -8.615850e-47 |
| Msa0504020 | Msa1188070 | 0.811983 | 5.329331e-51 | -8.615850e-47 |
| Msa0519000 | Msa1188070 | 0.821823 | 3.289320e-53 | -8.615850e-47 |
| Msa0884470 | Msa1188070 | 0.807929 | 3.974755e-50 | -8.615850e-47 |
| Msa0920870 | Msa1188070 | 0.810400 | 1.174890e-50 | -8.615850e-47 |
| Msa0944190 | Msa1188070 | 0.802830 | 4.657447e-49 | -8.615850e-47 |
| Msa0976670 | Msa1188070 | 0.811201 | 7.880196e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188070 | MtrunA17_Chr8g0355121 | 92.857 | 322 | 14 | 1 | 1 | 322 | 1 | 313 | 0.0 | 593 |
| Msa1188070 | MtrunA17_Chr3g0080341 | 64.396 | 323 | 108 | 4 | 6 | 322 | 1 | 322 | 1.36e-145 | 413 |
| Msa1188070 | MtrunA17_Chr7g0254991 | 47.605 | 334 | 144 | 8 | 6 | 322 | 1 | 320 | 2.88e-87 | 265 |
| Msa1188070 | MtrunA17_Chr6g0460301 | 49.398 | 332 | 142 | 7 | 6 | 322 | 1 | 321 | 5.66e-83 | 253 |
| Msa1188070 | MtrunA17_Chr4g0044771 | 36.023 | 347 | 141 | 11 | 23 | 301 | 17 | 350 | 2.82e-47 | 163 |
| Msa1188070 | MtrunA17_Chr5g0440841 | 54.902 | 153 | 62 | 3 | 1 | 150 | 1 | 149 | 1.55e-35 | 129 |
| Msa1188070 | MtrunA17_Chr5g0440841 | 61.364 | 88 | 33 | 1 | 235 | 322 | 183 | 269 | 1.43e-24 | 100 |
| Msa1188070 | MtrunA17_Chr7g0266211 | 32.000 | 350 | 147 | 8 | 30 | 294 | 45 | 388 | 8.26e-34 | 128 |
| Msa1188070 | MtrunA17_Chr2g0321411 | 35.439 | 285 | 125 | 12 | 27 | 294 | 11 | 253 | 2.85e-31 | 119 |
| Msa1188070 | MtrunA17_Chr3g0133971 | 48.529 | 136 | 62 | 3 | 12 | 144 | 14 | 144 | 1.17e-29 | 117 |
| Msa1188070 | MtrunA17_Chr3g0133971 | 63.768 | 69 | 22 | 1 | 229 | 297 | 333 | 398 | 2.44e-17 | 82.4 |
| Msa1188070 | MtrunA17_Chr2g0321381 | 34.164 | 281 | 153 | 8 | 26 | 294 | 24 | 284 | 1.07e-28 | 112 |
| Msa1188070 | MtrunA17_Chr5g0424871 | 31.313 | 297 | 163 | 8 | 16 | 273 | 4 | 298 | 3.91e-23 | 97.4 |
| Msa1188070 | MtrunA17_Chr4g0051101 | 53.521 | 71 | 29 | 1 | 238 | 304 | 117 | 187 | 1.54e-12 | 65.5 |
| Msa1188070 | MtrunA17_Chr5g0405951 | 30.328 | 244 | 102 | 11 | 102 | 297 | 1 | 224 | 1.86e-11 | 63.2 |
| Msa1188070 | MtrunA17_Chr1g0201751 | 62.745 | 51 | 19 | 0 | 246 | 296 | 157 | 207 | 6.85e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188070 | AT3G56850.1 | 54.426 | 305 | 112 | 8 | 23 | 322 | 15 | 297 | 2.91e-89 | 269 |
| Msa1188070 | AT2G41070.3 | 48.344 | 302 | 96 | 8 | 23 | 320 | 15 | 260 | 1.94e-73 | 228 |
| Msa1188070 | AT2G41070.1 | 48.344 | 302 | 96 | 8 | 23 | 320 | 15 | 260 | 1.94e-73 | 228 |
| Msa1188070 | AT2G41070.2 | 48.344 | 302 | 96 | 8 | 23 | 320 | 15 | 260 | 1.94e-73 | 228 |
| Msa1188070 | AT2G41070.4 | 48.344 | 302 | 96 | 8 | 23 | 320 | 24 | 269 | 2.21e-73 | 228 |
| Msa1188070 | AT2G41070.5 | 48.561 | 278 | 83 | 8 | 23 | 296 | 15 | 236 | 4.72e-65 | 205 |
| Msa1188070 | AT2G36270.1 | 32.367 | 414 | 159 | 13 | 23 | 322 | 36 | 442 | 1.59e-36 | 136 |
| Msa1188070 | AT2G36270.2 | 32.367 | 414 | 159 | 13 | 23 | 322 | 36 | 442 | 1.59e-36 | 136 |
| Msa1188070 | AT2G36270.3 | 32.723 | 382 | 143 | 10 | 23 | 297 | 36 | 410 | 2.58e-35 | 133 |
| Msa1188070 | AT3G44460.1 | 38.596 | 285 | 129 | 12 | 26 | 294 | 37 | 291 | 5.38e-29 | 114 |
| Msa1188070 | AT3G19290.2 | 46.429 | 140 | 56 | 3 | 24 | 144 | 34 | 173 | 1.60e-25 | 105 |
| Msa1188070 | AT3G19290.4 | 46.429 | 140 | 56 | 3 | 24 | 144 | 34 | 173 | 1.91e-25 | 105 |
| Msa1188070 | AT3G19290.4 | 59.016 | 61 | 22 | 1 | 236 | 296 | 340 | 397 | 1.21e-13 | 71.6 |
| Msa1188070 | AT3G19290.3 | 46.429 | 140 | 56 | 3 | 24 | 144 | 34 | 173 | 2.56e-25 | 105 |
| Msa1188070 | AT3G19290.3 | 59.016 | 61 | 22 | 1 | 236 | 296 | 340 | 397 | 2.01e-13 | 70.9 |
| Msa1188070 | AT3G19290.1 | 46.429 | 140 | 56 | 3 | 24 | 144 | 34 | 173 | 2.56e-25 | 105 |
| Msa1188070 | AT3G19290.1 | 59.016 | 61 | 22 | 1 | 236 | 296 | 340 | 397 | 2.04e-13 | 70.9 |
| Msa1188070 | AT3G19290.5 | 46.429 | 140 | 56 | 3 | 24 | 144 | 34 | 173 | 2.56e-25 | 105 |
| Msa1188070 | AT3G19290.5 | 59.016 | 61 | 22 | 1 | 236 | 296 | 340 | 397 | 2.04e-13 | 70.9 |
| Msa1188070 | AT4G34000.3 | 39.130 | 161 | 58 | 3 | 24 | 144 | 27 | 187 | 6.67e-24 | 101 |
| Msa1188070 | AT4G34000.3 | 55.294 | 85 | 36 | 2 | 234 | 317 | 357 | 440 | 3.45e-16 | 79.3 |
| Msa1188070 | AT4G34000.1 | 39.130 | 161 | 58 | 3 | 24 | 144 | 27 | 187 | 9.25e-24 | 101 |
| Msa1188070 | AT4G34000.1 | 64.706 | 68 | 22 | 2 | 234 | 301 | 357 | 422 | 6.17e-16 | 78.6 |
| Msa1188070 | AT4G34000.4 | 39.130 | 161 | 58 | 3 | 24 | 144 | 27 | 187 | 9.25e-24 | 101 |
| Msa1188070 | AT4G34000.4 | 64.706 | 68 | 22 | 2 | 234 | 301 | 357 | 422 | 6.17e-16 | 78.6 |
| Msa1188070 | AT4G34000.2 | 39.130 | 161 | 58 | 3 | 24 | 144 | 27 | 187 | 9.25e-24 | 101 |
| Msa1188070 | AT4G34000.2 | 64.706 | 68 | 22 | 2 | 234 | 301 | 357 | 422 | 6.17e-16 | 78.6 |
| Msa1188070 | AT5G42910.1 | 29.301 | 372 | 165 | 16 | 23 | 319 | 19 | 367 | 8.81e-23 | 97.8 |
| Msa1188070 | AT1G45249.10 | 34.392 | 189 | 91 | 5 | 24 | 190 | 21 | 198 | 2.14e-21 | 94.0 |
| Msa1188070 | AT1G45249.5 | 34.392 | 189 | 91 | 5 | 24 | 190 | 21 | 198 | 2.14e-21 | 94.0 |
| Msa1188070 | AT1G45249.7 | 34.392 | 189 | 91 | 5 | 24 | 190 | 36 | 213 | 3.39e-21 | 94.0 |
| Msa1188070 | AT1G45249.7 | 52.632 | 95 | 33 | 2 | 236 | 322 | 341 | 431 | 1.16e-17 | 83.6 |
| Msa1188070 | AT1G45249.6 | 34.392 | 189 | 91 | 5 | 24 | 190 | 36 | 213 | 3.39e-21 | 94.0 |
| Msa1188070 | AT1G45249.6 | 52.632 | 95 | 33 | 2 | 236 | 322 | 341 | 431 | 1.16e-17 | 83.6 |
| Msa1188070 | AT1G45249.4 | 34.392 | 189 | 91 | 5 | 24 | 190 | 21 | 198 | 3.57e-21 | 93.6 |
| Msa1188070 | AT1G45249.8 | 34.392 | 189 | 91 | 5 | 24 | 190 | 21 | 198 | 3.57e-21 | 93.6 |
| Msa1188070 | AT1G45249.2 | 34.392 | 189 | 91 | 5 | 24 | 190 | 21 | 198 | 3.57e-21 | 93.6 |
| Msa1188070 | AT1G45249.9 | 34.392 | 189 | 91 | 5 | 24 | 190 | 21 | 198 | 3.57e-21 | 93.6 |
| Msa1188070 | AT1G45249.1 | 34.392 | 189 | 91 | 5 | 24 | 190 | 21 | 198 | 3.61e-21 | 93.6 |
| Msa1188070 | AT1G45249.1 | 52.632 | 95 | 33 | 2 | 236 | 322 | 326 | 416 | 7.72e-18 | 84.0 |
| Msa1188070 | AT1G45249.3 | 34.392 | 189 | 91 | 5 | 24 | 190 | 21 | 198 | 5.78e-21 | 93.2 |
| Msa1188070 | AT1G45249.3 | 47.170 | 106 | 33 | 3 | 236 | 322 | 326 | 427 | 5.49e-15 | 75.5 |
| Msa1188070 | AT4G35900.1 | 30.739 | 257 | 110 | 12 | 101 | 322 | 62 | 285 | 5.95e-18 | 82.8 |
| Msa1188070 | AT5G44080.1 | 33.047 | 233 | 105 | 10 | 100 | 320 | 120 | 313 | 2.26e-17 | 81.6 |
| Msa1188070 | AT1G49720.1 | 46.875 | 96 | 39 | 2 | 236 | 322 | 300 | 392 | 4.09e-14 | 72.8 |
| Msa1188070 | AT1G49720.3 | 46.875 | 96 | 39 | 2 | 236 | 322 | 300 | 392 | 4.09e-14 | 72.8 |
| Msa1188070 | AT2G17770.2 | 48.276 | 87 | 42 | 2 | 236 | 322 | 112 | 195 | 6.78e-14 | 69.7 |
| Msa1188070 | AT1G49720.2 | 62.295 | 61 | 20 | 1 | 236 | 296 | 300 | 357 | 2.87e-13 | 70.5 |
| Msa1188070 | AT1G03970.1 | 27.928 | 222 | 100 | 6 | 100 | 310 | 85 | 257 | 1.34e-11 | 64.3 |
Find 98 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACAGTGGTAATTGATAAA+TGG | 0.173245 | 8_1:+28112703 | Msa1188070:exon |
| ATTCGACGTAGCTGATATTT+AGG | 0.229724 | 8_1:-28114602 | None:intergenic |
| GATGACATTGGAGGATTTCT+TGG | 0.249290 | 8_1:+28113108 | Msa1188070:CDS |
| ATCTACAAACCTCTACTTAT+AGG | 0.296760 | 8_1:-28114654 | None:intergenic |
| GGCATTGGGTGCACCTCTAA+TGG | 0.309529 | 8_1:+28113378 | Msa1188070:CDS |
| AAGGAGTACTCCGGAGGATA+TGG | 0.328607 | 8_1:+28113435 | Msa1188070:CDS |
| CAAAATCAATTAGGTGACTT+AGG | 0.335660 | 8_1:+28112836 | Msa1188070:CDS |
| CGAGAGAGACAAACTACTTT+AGG | 0.337274 | 8_1:+28113082 | Msa1188070:CDS |
| CGCAGATGCCTGGAAGAAAA+AGG | 0.341495 | 8_1:+28113416 | Msa1188070:CDS |
| GATGAAGTTCAAAATCAATT+AGG | 0.351054 | 8_1:+28112827 | Msa1188070:CDS |
| CTGTTTCCGTGCTCTTGAAC+GGG | 0.379424 | 8_1:-28113515 | None:intergenic |
| GGTTTGTAGATATAAGAATC+AGG | 0.382447 | 8_1:+28114666 | Msa1188070:three_prime_UTR |
| GCCTTCATTGTCCGTATTCG+TGG | 0.383060 | 8_1:-28112927 | None:intergenic |
| TGAGGCTGACACCTGCCTTT+TGG | 0.384315 | 8_1:+28114712 | Msa1188070:three_prime_UTR |
| GCATTGGGTGCACCTCTAAT+GGG | 0.388776 | 8_1:+28113379 | Msa1188070:CDS |
| AACAGTGGTAATTGATAAAT+GGG | 0.393072 | 8_1:+28112704 | Msa1188070:exon |
| CCGTTCAAGAGCACGGAAAC+AGG | 0.394263 | 8_1:+28113516 | Msa1188070:CDS |
| TCTGACACAGTCCCCATTAG+AGG | 0.402141 | 8_1:-28113391 | None:intergenic |
| TCTACAACGTCAAGCTAGTC+TGG | 0.406297 | 8_1:+28112973 | Msa1188070:CDS |
| TCTAGGAACAGGGATCAAAT+TGG | 0.411529 | 8_1:+28112645 | Msa1188070:intron |
| CATTGTCCGTATTCGTGGAC+TGG | 0.421785 | 8_1:-28112922 | None:intergenic |
| AGAGGACTGTGGATGAGGTT+TGG | 0.422682 | 8_1:+28113017 | Msa1188070:CDS |
| TGATATTTAGGTTCGGCAAT+TGG | 0.425901 | 8_1:-28114590 | None:intergenic |
| TCTAGGTTCATACTGCTTAG+TGG | 0.432596 | 8_1:-28112863 | None:intergenic |
| AAAATCAATTAGGTGACTTA+GGG | 0.436185 | 8_1:+28112837 | Msa1188070:CDS |
| CGAAGCGAACCTTTGTTTGT+CGG | 0.442161 | 8_1:-28111837 | None:intergenic |
| TCCGTTTGCAGATAGTCATA+TGG | 0.455759 | 8_1:+28113357 | Msa1188070:CDS |
| AGAAAAGGATGATCAAGAAT+CGG | 0.457820 | 8_1:+28113482 | Msa1188070:CDS |
| AAATAAAATTAACTCATGAT+TGG | 0.459209 | 8_1:-28114792 | None:intergenic |
| GCAGATAGTCATATGGCATT+GGG | 0.461753 | 8_1:+28113364 | Msa1188070:CDS |
| CTGTTGAGAGAAGGCAGAAA+AGG | 0.461801 | 8_1:+28113467 | Msa1188070:CDS |
| TGCAGATAGTCATATGGCAT+TGG | 0.465956 | 8_1:+28113363 | Msa1188070:CDS |
| CCTGTTTCCGTGCTCTTGAA+CGG | 0.468292 | 8_1:-28113516 | None:intergenic |
| GTGTCAGATACGCAGATGCC+TGG | 0.469471 | 8_1:+28113406 | Msa1188070:CDS |
| GGTTCGGCAATTGGTGTACA+TGG | 0.471070 | 8_1:-28114581 | None:intergenic |
| CAGCAAGAGGACTGTGGATG+AGG | 0.475392 | 8_1:+28113012 | Msa1188070:CDS |
| TAAATGGGAACTCAGACAAT+GGG | 0.478433 | 8_1:+28112719 | Msa1188070:exon |
| GAGGATTTCTTGGTGAAAGC+AGG | 0.483426 | 8_1:+28113118 | Msa1188070:CDS |
| GGGTCTCAAGGTGGTGGAGA+TGG | 0.487387 | 8_1:+28112740 | Msa1188070:CDS |
| ATAAATGGGAACTCAGACAA+TGG | 0.492628 | 8_1:+28112718 | Msa1188070:exon |
| TGATACTGCCACATTTGAAT+CGG | 0.495093 | 8_1:-28113194 | None:intergenic |
| TTTAGGAGAGATGACATTGG+AGG | 0.495208 | 8_1:+28113099 | Msa1188070:CDS |
| AGTATCACAGTTTCCTCCGC+AGG | 0.498543 | 8_1:+28113210 | Msa1188070:CDS |
| TAAAGTTTCACGCCTGGAAG+AGG | 0.502778 | 8_1:+28113664 | Msa1188070:CDS |
| GTTTGTAGATATAAGAATCA+GGG | 0.508543 | 8_1:+28114667 | Msa1188070:three_prime_UTR |
| ACGTAGCTGATATTTAGGTT+CGG | 0.511389 | 8_1:-28114597 | None:intergenic |
| ATCGGCCGCAGCCGTAGAAT+CGG | 0.519274 | 8_1:-28113176 | None:intergenic |
| GCCATATGACTATCTGCAAA+CGG | 0.520435 | 8_1:-28113358 | None:intergenic |
| TAAAACGAATACCGATTCTA+CGG | 0.520984 | 8_1:+28113165 | Msa1188070:CDS |
| GAAAAGGATGATCAAGAATC+GGG | 0.521274 | 8_1:+28113483 | Msa1188070:CDS |
| ACTCAGACAATGGGGTCTCA+AGG | 0.525496 | 8_1:+28112728 | Msa1188070:CDS |
| TGTTGTAGATGCTGATATTG+TGG | 0.526222 | 8_1:-28113256 | None:intergenic |
| AGTGAACCAGTCCACGAATA+CGG | 0.529125 | 8_1:+28112916 | Msa1188070:CDS |
| CAAGGTGGTGGAGATGGTAG+TGG | 0.530920 | 8_1:+28112746 | Msa1188070:CDS |
| GCATCTACAACAAAGTTCCA+TGG | 0.531471 | 8_1:+28113267 | Msa1188070:CDS |
| GTCTTCTCCACCATATCCTC+CGG | 0.535473 | 8_1:-28113445 | None:intergenic |
| CATATTCCAGAGATACCAAA+AGG | 0.538582 | 8_1:-28114727 | None:intergenic |
| TTTCTCTCTCCGACAAACAA+AGG | 0.542889 | 8_1:+28111828 | Msa1188070:five_prime_UTR |
| AGTTTCCTCCGCAGGGTCAG+TGG | 0.546455 | 8_1:+28113218 | Msa1188070:CDS |
| CATCTACAACAAAGTTCCAT+GGG | 0.551430 | 8_1:+28113268 | Msa1188070:CDS |
| TTCCAGAGATACCAAAAGGC+AGG | 0.552038 | 8_1:-28114723 | None:intergenic |
| GGGGATTTATATGCCTAGCC+AGG | 0.552814 | 8_1:+28113288 | Msa1188070:CDS |
| TAAAAGCTGCATTCAGCAAG+AGG | 0.554122 | 8_1:+28112999 | Msa1188070:CDS |
| AGATGCTGATATTGTGGTTG+CGG | 0.557999 | 8_1:-28113250 | None:intergenic |
| GGCTGTGCTATAACCTGGCT+AGG | 0.560978 | 8_1:-28113301 | None:intergenic |
| CAAAGAAGAGTGACGAACAA+AGG | 0.565370 | 8_1:-28111756 | None:intergenic |
| ACAATGGGGTCTCAAGGTGG+TGG | 0.565619 | 8_1:+28112734 | Msa1188070:CDS |
| GGAGATTAAAGTTTCACGCC+TGG | 0.572833 | 8_1:+28113658 | Msa1188070:CDS |
| ACAGGCTTACACAAATGAGT+TGG | 0.573200 | 8_1:+28113637 | Msa1188070:intron |
| TATAGCACAGCCGTTACACA+TGG | 0.574412 | 8_1:+28113312 | Msa1188070:CDS |
| TCCACGAATACGGACAATGA+AGG | 0.580287 | 8_1:+28112926 | Msa1188070:CDS |
| TGAAATGTTGAGGAAACGAA+AGG | 0.582873 | 8_1:+28113691 | Msa1188070:CDS |
| AAGAGGAAAATGAAATGTTG+AGG | 0.591873 | 8_1:+28113681 | Msa1188070:CDS |
| CTGCTGCCCGTTCAAGAGCA+CGG | 0.591970 | 8_1:+28113509 | Msa1188070:CDS |
| GAATACCGATTCTACGGCTG+CGG | 0.597719 | 8_1:+28113171 | Msa1188070:CDS |
| TGGAGAAGACTGTTGAGAGA+AGG | 0.597925 | 8_1:+28113458 | Msa1188070:CDS |
| GAGTACTCCGGAGGATATGG+TGG | 0.597936 | 8_1:+28113438 | Msa1188070:CDS |
| GTGGAGATGGTAGTGGAAGA+CGG | 0.609087 | 8_1:+28112753 | Msa1188070:CDS |
| GCACCTGACCCCATGTGTAA+CGG | 0.611183 | 8_1:-28113322 | None:intergenic |
| TTACTTTGTCTCTAGGAACA+GGG | 0.611259 | 8_1:+28112635 | Msa1188070:intron |
| CACAACTCCACTCTCTTGTG+AGG | 0.615377 | 8_1:+28112777 | Msa1188070:CDS |
| ATCTGTGTACCTATAAGTAG+AGG | 0.617878 | 8_1:+28114645 | Msa1188070:three_prime_UTR |
| TAGGTACACAGATCTCAGAA+TGG | 0.634421 | 8_1:-28114635 | None:intergenic |
| CATTGGGTGCACCTCTAATG+GGG | 0.635245 | 8_1:+28113380 | Msa1188070:CDS |
| TACTTTAGGAGAGATGACAT+TGG | 0.639124 | 8_1:+28113096 | Msa1188070:CDS |
| GGCTGCGGCCGATTCAAATG+TGG | 0.639880 | 8_1:+28113186 | Msa1188070:CDS |
| TACTGTAACCACTGACCCTG+CGG | 0.642687 | 8_1:-28113226 | None:intergenic |
| TGTAACCACTGACCCTGCGG+AGG | 0.649342 | 8_1:-28113223 | None:intergenic |
| GCTAGGCATATAAATCCCCA+TGG | 0.652039 | 8_1:-28113284 | None:intergenic |
| TAGCACAGCCGTTACACATG+GGG | 0.656286 | 8_1:+28113314 | Msa1188070:CDS |
| ATAGCACAGCCGTTACACAT+GGG | 0.668336 | 8_1:+28113313 | Msa1188070:CDS |
| ATGAAGTGAATTGTTAACAG+TGG | 0.684459 | 8_1:+28112689 | Msa1188070:five_prime_UTR |
| CAGACAATGGGGTCTCAAGG+TGG | 0.688721 | 8_1:+28112731 | Msa1188070:CDS |
| TGCATTCAGCAAGAGGACTG+TGG | 0.691129 | 8_1:+28113006 | Msa1188070:CDS |
| AAATGGGAACTCAGACAATG+GGG | 0.712282 | 8_1:+28112720 | Msa1188070:exon |
| ATTACTGAAGAACTTAACAG+AGG | 0.717363 | 8_1:-28114764 | None:intergenic |
| ATCTACAACAAAGTTCCATG+GGG | 0.739377 | 8_1:+28113269 | Msa1188070:CDS |
| CCAACAAAAGAAAGACAACG+AGG | 0.748926 | 8_1:+28113048 | Msa1188070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTTAGGATTAAAT+TGG | + | chr8_1:28112558-28112577 | Msa1188070:intron | 10.0% |
| !!! | ATTTTTTTTAGGATTAAATT+GGG | + | chr8_1:28112559-28112578 | Msa1188070:intron | 10.0% |
| !!! | AAAGTTTTAATTTTGAATTC+TGG | + | chr8_1:28112099-28112118 | Msa1188070:intron | 15.0% |
| !!! | AAGTTTTAATTTTGAATTCT+GGG | + | chr8_1:28112100-28112119 | Msa1188070:intron | 15.0% |
| !!! | AATTTGGTACTATTTTTTTT+AGG | + | chr8_1:28112548-28112567 | Msa1188070:intron | 15.0% |
| !! | TTGAAATTATAAGGTTTAAT+TGG | + | chr8_1:28113726-28113745 | Msa1188070:intron | 15.0% |
| !!! | AATTAGTGGATTATTTTATT+AGG | + | chr8_1:28114072-28114091 | Msa1188070:intron | 15.0% |
| !! | ATAATCTGATAATATATAAG+AGG | - | chr8_1:28114515-28114534 | None:intergenic | 15.0% |
| !! | GTAACATAAATTAAGAAAAG+AGG | - | chr8_1:28111874-28111893 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTTCTGTGAAATT+AGG | + | chr8_1:28112205-28112224 | Msa1188070:intron | 20.0% |
| !!! | AATTTGTGTGTTTTGAAAAT+GGG | + | chr8_1:28112259-28112278 | Msa1188070:intron | 20.0% |
| !! | TCTTTAGATTACTTCAAAAA+GGG | - | chr8_1:28112363-28112382 | None:intergenic | 20.0% |
| !! | TTCTTTAGATTACTTCAAAA+AGG | - | chr8_1:28112364-28112383 | None:intergenic | 20.0% |
| !! | AAGTAATCTAAAGAAAGAAA+TGG | + | chr8_1:28112369-28112388 | Msa1188070:intron | 20.0% |
| !! | CAAAAACCAATCAAATAATA+AGG | - | chr8_1:28113577-28113596 | None:intergenic | 20.0% |
| !!! | AAAGTTATTATTCAGGTTTA+GGG | - | chr8_1:28113612-28113631 | None:intergenic | 20.0% |
| !!! | TAAAGTTATTATTCAGGTTT+AGG | - | chr8_1:28113613-28113632 | None:intergenic | 20.0% |
| !!! | GTTTGTTAAAGTTATTATTC+AGG | - | chr8_1:28113619-28113638 | None:intergenic | 20.0% |
| !! | GAATAATAACTTTAACAAAC+AGG | + | chr8_1:28113619-28113638 | Msa1188070:intron | 20.0% |
| !!! | TAGTTTGTATTGTACATTTT+TGG | + | chr8_1:28113812-28113831 | Msa1188070:intron | 20.0% |
| !! | TATAAGAGTTAAAGAGAAAA+AGG | - | chr8_1:28113975-28113994 | None:intergenic | 20.0% |
| !! | TTCTCTTTAACTCTTATAAT+TGG | + | chr8_1:28113977-28113996 | Msa1188070:intron | 20.0% |
| !! | TTGTTAGATTTGAATGAAAT+AGG | + | chr8_1:28114000-28114019 | Msa1188070:intron | 20.0% |
| !!! | ATTTTTACCTGTTAAAATCA+TGG | + | chr8_1:28114448-28114467 | Msa1188070:intron | 20.0% |
| !!! | TTTTTACCTGTTAAAATCAT+GGG | + | chr8_1:28114449-28114468 | Msa1188070:intron | 20.0% |
| !!! | AATAGAAGCTTTTTCTGTAA+TGG | + | chr8_1:28111976-28111995 | Msa1188070:intron | 25.0% |
| !!! | ATAGAAGCTTTTTCTGTAAT+GGG | + | chr8_1:28111977-28111996 | Msa1188070:intron | 25.0% |
| !! | AATTGTGATTGAGATGTTTT+TGG | + | chr8_1:28112014-28112033 | Msa1188070:intron | 25.0% |
| !! | TGAAATTAGGAAAATGGTTT+TGG | + | chr8_1:28112218-28112237 | Msa1188070:intron | 25.0% |
| !! | GAAATTAGGAAAATGGTTTT+GGG | + | chr8_1:28112219-28112238 | Msa1188070:intron | 25.0% |
| !!! | CAATTTGTGTGTTTTGAAAA+TGG | + | chr8_1:28112258-28112277 | Msa1188070:intron | 25.0% |
| !!! | ATTTGTGTGTTTTGAAAATG+GGG | + | chr8_1:28112260-28112279 | Msa1188070:intron | 25.0% |
| ! | TAAGAGACTAAATTATTGTG+AGG | - | chr8_1:28112427-28112446 | None:intergenic | 25.0% |
| !! | TTTCTTTTTACTTTGTCTCT+AGG | + | chr8_1:28112628-28112647 | Msa1188070:intron | 25.0% |
| ! | TAACAGTGGTAATTGATAAA+TGG | + | chr8_1:28112703-28112722 | Msa1188070:exon | 25.0% |
| ! | AACAGTGGTAATTGATAAAT+GGG | + | chr8_1:28112704-28112723 | Msa1188070:exon | 25.0% |
| ! | GATGAAGTTCAAAATCAATT+AGG | + | chr8_1:28112827-28112846 | Msa1188070:CDS | 25.0% |
| ! | AAAATCAATTAGGTGACTTA+GGG | + | chr8_1:28112837-28112856 | Msa1188070:CDS | 25.0% |
| !!! | GATTCTGCTTTGAAATTATA+AGG | + | chr8_1:28113717-28113736 | Msa1188070:intron | 25.0% |
| ! | TTATAATTTCAGCACAAGAT+AGG | + | chr8_1:28113836-28113855 | Msa1188070:intron | 25.0% |
| ! | ACCAAGTAAAGATTAATTAG+TGG | + | chr8_1:28114058-28114077 | Msa1188070:intron | 25.0% |
| ! | TCCACTAATTAATCTTTACT+TGG | - | chr8_1:28114062-28114081 | None:intergenic | 25.0% |
| ! | TTTGTCATTAAGAATTGTTC+AGG | + | chr8_1:28114131-28114150 | Msa1188070:intron | 25.0% |
| ! | ATGGTTGTTTACTTGATATT+GGG | + | chr8_1:28114283-28114302 | Msa1188070:intron | 25.0% |
| ! | GATAGAGACTTTATATAGTA+TGG | - | chr8_1:28114396-28114415 | None:intergenic | 25.0% |
| ! | TAAGTTAGCATGTATAAAAG+AGG | - | chr8_1:28114484-28114503 | None:intergenic | 25.0% |
| ! | GTTTGTAGATATAAGAATCA+GGG | + | chr8_1:28114667-28114686 | Msa1188070:three_prime_UTR | 25.0% |
| !! | TTTTCTTGTAGTTTAATGTG+AGG | + | chr8_1:28114694-28114713 | Msa1188070:three_prime_UTR | 25.0% |
| ATTCAACAATGACACTGAAT+TGG | + | chr8_1:28112039-28112058 | Msa1188070:intron | 30.0% | |
| GTTCTGTGAAATTAGGAAAA+TGG | + | chr8_1:28112212-28112231 | Msa1188070:intron | 30.0% | |
| !!! | TGTTTTGAAAATGGGGTTTT+GGG | + | chr8_1:28112267-28112286 | Msa1188070:intron | 30.0% |
| !! | TTTTGAGTAAAGACCCATTT+TGG | + | chr8_1:28112400-28112419 | Msa1188070:intron | 30.0% |
| ATTATTGTGAGGACCAAAAT+GGG | - | chr8_1:28112416-28112435 | None:intergenic | 30.0% | |
| AATTATTGTGAGGACCAAAA+TGG | - | chr8_1:28112417-28112436 | None:intergenic | 30.0% | |
| GACTTCATATAGAAACTGTT+GGG | - | chr8_1:28112473-28112492 | None:intergenic | 30.0% | |
| AGACTTCATATAGAAACTGT+TGG | - | chr8_1:28112474-28112493 | None:intergenic | 30.0% | |
| AACAGTTTCTATATGAAGTC+TGG | + | chr8_1:28112473-28112492 | Msa1188070:intron | 30.0% | |
| ATGAAGTGAATTGTTAACAG+TGG | + | chr8_1:28112689-28112708 | Msa1188070:five_prime_UTR | 30.0% | |
| CAAAATCAATTAGGTGACTT+AGG | + | chr8_1:28112836-28112855 | Msa1188070:CDS | 30.0% | |
| !! | TAAAACGAATACCGATTCTA+CGG | + | chr8_1:28113165-28113184 | Msa1188070:CDS | 30.0% |
| AGAAAAGGATGATCAAGAAT+CGG | + | chr8_1:28113482-28113501 | Msa1188070:CDS | 30.0% | |
| GCAAGTCCTTATTATTTGAT+TGG | + | chr8_1:28113568-28113587 | Msa1188070:intron | 30.0% | |
| AAGAGGAAAATGAAATGTTG+AGG | + | chr8_1:28113681-28113700 | Msa1188070:CDS | 30.0% | |
| AATACAAACTACTCAATCTG+GGG | - | chr8_1:28113803-28113822 | None:intergenic | 30.0% | |
| CAATACAAACTACTCAATCT+GGG | - | chr8_1:28113804-28113823 | None:intergenic | 30.0% | |
| ACAATACAAACTACTCAATC+TGG | - | chr8_1:28113805-28113824 | None:intergenic | 30.0% | |
| ! | ATACAATTCTCTGCATTTTC+TGG | + | chr8_1:28113882-28113901 | Msa1188070:intron | 30.0% |
| AAGAGAAAAAGGATGCATAA+TGG | - | chr8_1:28113964-28113983 | None:intergenic | 30.0% | |
| !! | AATCTTTACTTGGTGTATCA+GGG | - | chr8_1:28114052-28114071 | None:intergenic | 30.0% |
| !! | TAATCTTTACTTGGTGTATC+AGG | - | chr8_1:28114053-28114072 | None:intergenic | 30.0% |
| CAAAGTAAAAGATAGAGCAT+AGG | - | chr8_1:28114115-28114134 | None:intergenic | 30.0% | |
| !!! | GTTAGTTCTGATACAACTTT+TGG | + | chr8_1:28114210-28114229 | Msa1188070:intron | 30.0% |
| GATGGTTGTTTACTTGATAT+TGG | + | chr8_1:28114282-28114301 | Msa1188070:intron | 30.0% | |
| TTACTTGATATTGGGTGATT+TGG | + | chr8_1:28114291-28114310 | Msa1188070:intron | 30.0% | |
| CATTCAATTAGCAGTATTTG+TGG | + | chr8_1:28114351-28114370 | Msa1188070:intron | 30.0% | |
| ATATATGCACATTGTATCCA+TGG | + | chr8_1:28114423-28114442 | Msa1188070:intron | 30.0% | |
| TTAACAGGTAAAAATGACCA+TGG | - | chr8_1:28114443-28114462 | None:intergenic | 30.0% | |
| !! | TTTGTTCCCATGATTTTAAC+AGG | - | chr8_1:28114458-28114477 | None:intergenic | 30.0% |
| ATCTACAAACCTCTACTTAT+AGG | - | chr8_1:28114657-28114676 | None:intergenic | 30.0% | |
| GGTTTGTAGATATAAGAATC+AGG | + | chr8_1:28114666-28114685 | Msa1188070:three_prime_UTR | 30.0% | |
| ATTACTGAAGAACTTAACAG+AGG | - | chr8_1:28114767-28114786 | None:intergenic | 30.0% | |
| !!! | GTGTTTTGAAAATGGGGTTT+TGG | + | chr8_1:28112266-28112285 | Msa1188070:intron | 35.0% |
| ! | TTGTTTGACTTTGCATGCAA+AGG | + | chr8_1:28112320-28112339 | Msa1188070:intron | 35.0% |
| ! | TGTTTGACTTTGCATGCAAA+GGG | + | chr8_1:28112321-28112340 | Msa1188070:intron | 35.0% |
| AGAAACTGTTGGGACTAATT+TGG | - | chr8_1:28112463-28112482 | None:intergenic | 35.0% | |
| ! | AGTCTGGTTCATTATAACGA+AGG | + | chr8_1:28112489-28112508 | Msa1188070:intron | 35.0% |
| ! | GTCTGGTTCATTATAACGAA+GGG | + | chr8_1:28112490-28112509 | Msa1188070:intron | 35.0% |
| TTCTCCGACATTGTCAAATT+GGG | - | chr8_1:28112527-28112546 | None:intergenic | 35.0% | |
| ATTCTCCGACATTGTCAAAT+TGG | - | chr8_1:28112528-28112547 | None:intergenic | 35.0% | |
| GACAATGTCGGAGAATAATT+TGG | + | chr8_1:28112532-28112551 | Msa1188070:intron | 35.0% | |
| AAAATCGTCAGGGATCAAAT+TGG | + | chr8_1:28112589-28112608 | Msa1188070:intron | 35.0% | |
| AAATCGTCAGGGATCAAATT+GGG | + | chr8_1:28112590-28112609 | Msa1188070:intron | 35.0% | |
| ! | TTTACTTTGTCTCTAGGAAC+AGG | + | chr8_1:28112634-28112653 | Msa1188070:intron | 35.0% |
| ! | TTACTTTGTCTCTAGGAACA+GGG | + | chr8_1:28112635-28112654 | Msa1188070:intron | 35.0% |
| ATAAATGGGAACTCAGACAA+TGG | + | chr8_1:28112718-28112737 | Msa1188070:exon | 35.0% | |
| TAAATGGGAACTCAGACAAT+GGG | + | chr8_1:28112719-28112738 | Msa1188070:exon | 35.0% | |
| ! | ACGAGCTTCTGAAAAATGTA+TGG | + | chr8_1:28112885-28112904 | Msa1188070:CDS | 35.0% |
| ! | TACTTTAGGAGAGATGACAT+TGG | + | chr8_1:28113096-28113115 | Msa1188070:CDS | 35.0% |
| TGATACTGCCACATTTGAAT+CGG | - | chr8_1:28113197-28113216 | None:intergenic | 35.0% | |
| TGTTGTAGATGCTGATATTG+TGG | - | chr8_1:28113259-28113278 | None:intergenic | 35.0% | |
| CATCTACAACAAAGTTCCAT+GGG | + | chr8_1:28113268-28113287 | Msa1188070:CDS | 35.0% | |
| ATCTACAACAAAGTTCCATG+GGG | + | chr8_1:28113269-28113288 | Msa1188070:CDS | 35.0% | |
| GAAAAGGATGATCAAGAATC+GGG | + | chr8_1:28113483-28113502 | Msa1188070:CDS | 35.0% | |
| ! | ACATTTCATTTTCCTCTTCC+AGG | - | chr8_1:28113679-28113698 | None:intergenic | 35.0% |
| TGAAATGTTGAGGAAACGAA+AGG | + | chr8_1:28113691-28113710 | Msa1188070:CDS | 35.0% | |
| ! | TCTCTGCATTTTCTGGATTA+AGG | + | chr8_1:28113889-28113908 | Msa1188070:intron | 35.0% |
| TTGGATTATTCTGCTCTCAA+TGG | + | chr8_1:28114229-28114248 | Msa1188070:intron | 35.0% | |
| ! | AAATATCTGCTGCTTCATGA+TGG | + | chr8_1:28114264-28114283 | Msa1188070:intron | 35.0% |
| AATATTTGTCCTCAACATGC+AGG | + | chr8_1:28114541-28114560 | Msa1188070:intron | 35.0% | |
| ! | TGATATTTAGGTTCGGCAAT+TGG | - | chr8_1:28114593-28114612 | None:intergenic | 35.0% |
| ! | ACGTAGCTGATATTTAGGTT+CGG | - | chr8_1:28114600-28114619 | None:intergenic | 35.0% |
| ATTCGACGTAGCTGATATTT+AGG | - | chr8_1:28114605-28114624 | None:intergenic | 35.0% | |
| ATCTGTGTACCTATAAGTAG+AGG | + | chr8_1:28114645-28114664 | Msa1188070:three_prime_UTR | 35.0% | |
| CATATTCCAGAGATACCAAA+AGG | - | chr8_1:28114730-28114749 | None:intergenic | 35.0% | |
| CAAAGAAGAGTGACGAACAA+AGG | - | chr8_1:28111759-28111778 | None:intergenic | 40.0% | |
| GAGAGAGAAAAACATCGATC+TGG | - | chr8_1:28111818-28111837 | None:intergenic | 40.0% | |
| TTTCTCTCTCCGACAAACAA+AGG | + | chr8_1:28111828-28111847 | Msa1188070:five_prime_UTR | 40.0% | |
| CTGAATTGGTTGCATGCAAA+TGG | + | chr8_1:28112053-28112072 | Msa1188070:intron | 40.0% | |
| !!! | AATGGGGTTTTGGGTTTCAA+AGG | + | chr8_1:28112276-28112295 | Msa1188070:intron | 40.0% |
| TGTCCCCAATTTGACAATGT+CGG | + | chr8_1:28112520-28112539 | Msa1188070:intron | 40.0% | |
| TCTCCGACATTGTCAAATTG+GGG | - | chr8_1:28112526-28112545 | None:intergenic | 40.0% | |
| TCTAGGAACAGGGATCAAAT+TGG | + | chr8_1:28112645-28112664 | Msa1188070:intron | 40.0% | |
| AAATGGGAACTCAGACAATG+GGG | + | chr8_1:28112720-28112739 | Msa1188070:exon | 40.0% | |
| ! | AATTTTGCCTCACAAGAGAG+TGG | - | chr8_1:28112787-28112806 | None:intergenic | 40.0% |
| TCTAGGTTCATACTGCTTAG+TGG | - | chr8_1:28112866-28112885 | None:intergenic | 40.0% | |
| !! | CATTTTTCAGAAGCTCGTCT+AGG | - | chr8_1:28112883-28112902 | None:intergenic | 40.0% |
| TAAAAGCTGCATTCAGCAAG+AGG | + | chr8_1:28112999-28113018 | Msa1188070:CDS | 40.0% | |
| ! | CCTCGTTGTCTTTCTTTTGT+TGG | - | chr8_1:28113051-28113070 | None:intergenic | 40.0% |
| CCAACAAAAGAAAGACAACG+AGG | + | chr8_1:28113048-28113067 | Msa1188070:CDS | 40.0% | |
| CGAGAGAGACAAACTACTTT+AGG | + | chr8_1:28113082-28113101 | Msa1188070:CDS | 40.0% | |
| TTTAGGAGAGATGACATTGG+AGG | + | chr8_1:28113099-28113118 | Msa1188070:CDS | 40.0% | |
| GATGACATTGGAGGATTTCT+TGG | + | chr8_1:28113108-28113127 | Msa1188070:CDS | 40.0% | |
| AGATGCTGATATTGTGGTTG+CGG | - | chr8_1:28113253-28113272 | None:intergenic | 40.0% | |
| GCATCTACAACAAAGTTCCA+TGG | + | chr8_1:28113267-28113286 | Msa1188070:CDS | 40.0% | |
| TCCGTTTGCAGATAGTCATA+TGG | + | chr8_1:28113357-28113376 | Msa1188070:CDS | 40.0% | |
| GCCATATGACTATCTGCAAA+CGG | - | chr8_1:28113361-28113380 | None:intergenic | 40.0% | |
| TGCAGATAGTCATATGGCAT+TGG | + | chr8_1:28113363-28113382 | Msa1188070:CDS | 40.0% | |
| GCAGATAGTCATATGGCATT+GGG | + | chr8_1:28113364-28113383 | Msa1188070:CDS | 40.0% | |
| !! | TGGAAGAAAAAGGAGTACTC+CGG | + | chr8_1:28113426-28113445 | Msa1188070:CDS | 40.0% |
| ACAGGCTTACACAAATGAGT+TGG | + | chr8_1:28113637-28113656 | Msa1188070:intron | 40.0% | |
| TCTGGGGAATGAAAGGAATT+AGG | - | chr8_1:28113787-28113806 | None:intergenic | 40.0% | |
| TACTCAATCTGGGGAATGAA+AGG | - | chr8_1:28113794-28113813 | None:intergenic | 40.0% | |
| AATGGAAATGACACATGCTC+AGG | - | chr8_1:28113946-28113965 | None:intergenic | 40.0% | |
| GCAGTATTTGTGGAAGATCT+TGG | + | chr8_1:28114361-28114380 | Msa1188070:intron | 40.0% | |
| TAGGTACACAGATCTCAGAA+TGG | - | chr8_1:28114638-28114657 | None:intergenic | 40.0% | |
| ! | CGAAGCGAACCTTTGTTTGT+CGG | - | chr8_1:28111840-28111859 | None:intergenic | 45.0% |
| AGTGAACCAGTCCACGAATA+CGG | + | chr8_1:28112916-28112935 | Msa1188070:CDS | 45.0% | |
| TCCACGAATACGGACAATGA+AGG | + | chr8_1:28112926-28112945 | Msa1188070:CDS | 45.0% | |
| TCTACAACGTCAAGCTAGTC+TGG | + | chr8_1:28112973-28112992 | Msa1188070:CDS | 45.0% | |
| GAGGATTTCTTGGTGAAAGC+AGG | + | chr8_1:28113118-28113137 | Msa1188070:CDS | 45.0% | |
| GCTAGGCATATAAATCCCCA+TGG | - | chr8_1:28113287-28113306 | None:intergenic | 45.0% | |
| TATAGCACAGCCGTTACACA+TGG | + | chr8_1:28113312-28113331 | Msa1188070:CDS | 45.0% | |
| ATAGCACAGCCGTTACACAT+GGG | + | chr8_1:28113313-28113332 | Msa1188070:CDS | 45.0% | |
| !! | GGAGTACTCCTTTTTCTTCC+AGG | - | chr8_1:28113427-28113446 | None:intergenic | 45.0% |
| !! | AAGAAAAAGGAGTACTCCGG+AGG | + | chr8_1:28113429-28113448 | Msa1188070:CDS | 45.0% |
| TGGAGAAGACTGTTGAGAGA+AGG | + | chr8_1:28113458-28113477 | Msa1188070:CDS | 45.0% | |
| CTGTTGAGAGAAGGCAGAAA+AGG | + | chr8_1:28113467-28113486 | Msa1188070:CDS | 45.0% | |
| GGAGATTAAAGTTTCACGCC+TGG | + | chr8_1:28113658-28113677 | Msa1188070:CDS | 45.0% | |
| TAAAGTTTCACGCCTGGAAG+AGG | + | chr8_1:28113664-28113683 | Msa1188070:CDS | 45.0% | |
| AGGGATATCAGGCTGATCAA+TGG | - | chr8_1:28114033-28114052 | None:intergenic | 45.0% | |
| ! | CTTGGTGTATCAGGGATATC+AGG | - | chr8_1:28114044-28114063 | None:intergenic | 45.0% |
| TTCCAGAGATACCAAAAGGC+AGG | - | chr8_1:28114726-28114745 | None:intergenic | 45.0% | |
| ACTCAGACAATGGGGTCTCA+AGG | + | chr8_1:28112728-28112747 | Msa1188070:CDS | 50.0% | |
| !! | GTGGAGATGGTAGTGGAAGA+CGG | + | chr8_1:28112753-28112772 | Msa1188070:CDS | 50.0% |
| CACAACTCCACTCTCTTGTG+AGG | + | chr8_1:28112777-28112796 | Msa1188070:CDS | 50.0% | |
| CATTGTCCGTATTCGTGGAC+TGG | - | chr8_1:28112925-28112944 | None:intergenic | 50.0% | |
| GCCTTCATTGTCCGTATTCG+TGG | - | chr8_1:28112930-28112949 | None:intergenic | 50.0% | |
| TGCATTCAGCAAGAGGACTG+TGG | + | chr8_1:28113006-28113025 | Msa1188070:CDS | 50.0% | |
| AGAGGACTGTGGATGAGGTT+TGG | + | chr8_1:28113017-28113036 | Msa1188070:CDS | 50.0% | |
| !! | GAATACCGATTCTACGGCTG+CGG | + | chr8_1:28113171-28113190 | Msa1188070:CDS | 50.0% |
| AGTATCACAGTTTCCTCCGC+AGG | + | chr8_1:28113210-28113229 | Msa1188070:CDS | 50.0% | |
| GTATCACAGTTTCCTCCGCA+GGG | + | chr8_1:28113211-28113230 | Msa1188070:CDS | 50.0% | |
| TACTGTAACCACTGACCCTG+CGG | - | chr8_1:28113229-28113248 | None:intergenic | 50.0% | |
| GGGGATTTATATGCCTAGCC+AGG | + | chr8_1:28113288-28113307 | Msa1188070:CDS | 50.0% | |
| GTAACGGCTGTGCTATAACC+TGG | - | chr8_1:28113309-28113328 | None:intergenic | 50.0% | |
| TAGCACAGCCGTTACACATG+GGG | + | chr8_1:28113314-28113333 | Msa1188070:CDS | 50.0% | |
| GCATTGGGTGCACCTCTAAT+GGG | + | chr8_1:28113379-28113398 | Msa1188070:CDS | 50.0% | |
| CATTGGGTGCACCTCTAATG+GGG | + | chr8_1:28113380-28113399 | Msa1188070:CDS | 50.0% | |
| TCTGACACAGTCCCCATTAG+AGG | - | chr8_1:28113394-28113413 | None:intergenic | 50.0% | |
| CGCAGATGCCTGGAAGAAAA+AGG | + | chr8_1:28113416-28113435 | Msa1188070:CDS | 50.0% | |
| !! | AAGGAGTACTCCGGAGGATA+TGG | + | chr8_1:28113435-28113454 | Msa1188070:CDS | 50.0% |
| GTCTTCTCCACCATATCCTC+CGG | - | chr8_1:28113448-28113467 | None:intergenic | 50.0% | |
| CTGTTTCCGTGCTCTTGAAC+GGG | - | chr8_1:28113518-28113537 | None:intergenic | 50.0% | |
| CCTGTTTCCGTGCTCTTGAA+CGG | - | chr8_1:28113519-28113538 | None:intergenic | 50.0% | |
| ! | TCTCTAGCTCCTGCATGTTG+AGG | - | chr8_1:28114553-28114572 | None:intergenic | 50.0% |
| GGTTCGGCAATTGGTGTACA+TGG | - | chr8_1:28114584-28114603 | None:intergenic | 50.0% | |
| ! | CACCTGCCTTTTGGTATCTC+TGG | + | chr8_1:28114721-28114740 | Msa1188070:three_prime_UTR | 50.0% |
| TGGGTCGCGAGAAAATCGTC+AGG | + | chr8_1:28112578-28112597 | Msa1188070:intron | 55.0% | |
| GGGTCGCGAGAAAATCGTCA+GGG | + | chr8_1:28112579-28112598 | Msa1188070:intron | 55.0% | |
| CAGACAATGGGGTCTCAAGG+TGG | + | chr8_1:28112731-28112750 | Msa1188070:CDS | 55.0% | |
| ACAATGGGGTCTCAAGGTGG+TGG | + | chr8_1:28112734-28112753 | Msa1188070:CDS | 55.0% | |
| !! | CAAGGTGGTGGAGATGGTAG+TGG | + | chr8_1:28112746-28112765 | Msa1188070:CDS | 55.0% |
| CAGCAAGAGGACTGTGGATG+AGG | + | chr8_1:28113012-28113031 | Msa1188070:CDS | 55.0% | |
| GGCTGTGCTATAACCTGGCT+AGG | - | chr8_1:28113304-28113323 | None:intergenic | 55.0% | |
| GCACCTGACCCCATGTGTAA+CGG | - | chr8_1:28113325-28113344 | None:intergenic | 55.0% | |
| ! | GGCATTGGGTGCACCTCTAA+TGG | + | chr8_1:28113378-28113397 | Msa1188070:CDS | 55.0% |
| GTGTCAGATACGCAGATGCC+TGG | + | chr8_1:28113406-28113425 | Msa1188070:CDS | 55.0% | |
| GAGTACTCCGGAGGATATGG+TGG | + | chr8_1:28113438-28113457 | Msa1188070:CDS | 55.0% | |
| ! | CCGTTCAAGAGCACGGAAAC+AGG | + | chr8_1:28113516-28113535 | Msa1188070:CDS | 55.0% |
| ! | TGAGGCTGACACCTGCCTTT+TGG | + | chr8_1:28114712-28114731 | Msa1188070:three_prime_UTR | 55.0% |
| !! | GGGTCTCAAGGTGGTGGAGA+TGG | + | chr8_1:28112740-28112759 | Msa1188070:CDS | 60.0% |
| ATCGGCCGCAGCCGTAGAAT+CGG | - | chr8_1:28113179-28113198 | None:intergenic | 60.0% | |
| ! | GGCTGCGGCCGATTCAAATG+TGG | + | chr8_1:28113186-28113205 | Msa1188070:CDS | 60.0% |
| AGTTTCCTCCGCAGGGTCAG+TGG | + | chr8_1:28113218-28113237 | Msa1188070:CDS | 60.0% | |
| TGTAACCACTGACCCTGCGG+AGG | - | chr8_1:28113226-28113245 | None:intergenic | 60.0% | |
| CAGCCGTTACACATGGGGTC+AGG | + | chr8_1:28113319-28113338 | Msa1188070:CDS | 60.0% | |
| CATGGGGTCAGGTGCTTCGA+TGG | + | chr8_1:28113330-28113349 | Msa1188070:CDS | 60.0% | |
| CTGCTGCCCGTTCAAGAGCA+CGG | + | chr8_1:28113509-28113528 | Msa1188070:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 28111703 | 28114801 | 28111703 | ID=Msa1188070;Name=Msa1188070 |
| chr8_1 | mRNA | 28111703 | 28114801 | 28111703 | ID=Msa1188070-mRNA-1;Parent=Msa1188070;Name=Msa1188070-mRNA-1;_AED=0.01;_eAED=0.01;_QI=219|1|1|1|0.66|0.5|4|158|322 |
| chr8_1 | exon | 28111703 | 28111849 | 28111703 | ID=Msa1188070-mRNA-1:exon:9884;Parent=Msa1188070-mRNA-1 |
| chr8_1 | exon | 28112650 | 28113537 | 28112650 | ID=Msa1188070-mRNA-1:exon:9885;Parent=Msa1188070-mRNA-1 |
| chr8_1 | exon | 28113641 | 28113712 | 28113641 | ID=Msa1188070-mRNA-1:exon:9886;Parent=Msa1188070-mRNA-1 |
| chr8_1 | exon | 28114563 | 28114801 | 28114563 | ID=Msa1188070-mRNA-1:exon:9887;Parent=Msa1188070-mRNA-1 |
| chr8_1 | five_prime_UTR | 28111703 | 28111849 | 28111703 | ID=Msa1188070-mRNA-1:five_prime_utr;Parent=Msa1188070-mRNA-1 |
| chr8_1 | five_prime_UTR | 28112650 | 28112721 | 28112650 | ID=Msa1188070-mRNA-1:five_prime_utr;Parent=Msa1188070-mRNA-1 |
| chr8_1 | CDS | 28112722 | 28113537 | 28112722 | ID=Msa1188070-mRNA-1:cds;Parent=Msa1188070-mRNA-1 |
| chr8_1 | CDS | 28113641 | 28113712 | 28113641 | ID=Msa1188070-mRNA-1:cds;Parent=Msa1188070-mRNA-1 |
| chr8_1 | CDS | 28114563 | 28114643 | 28114563 | ID=Msa1188070-mRNA-1:cds;Parent=Msa1188070-mRNA-1 |
| chr8_1 | three_prime_UTR | 28114644 | 28114801 | 28114644 | ID=Msa1188070-mRNA-1:three_prime_utr;Parent=Msa1188070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
