Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1107810 | XP_013448606.1 | 96.330 | 436 | 13 | 2 | 1 | 435 | 1 | 434 | 0.0 | 851 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1107810 | sp|Q9LFC0|HAKAI_ARATH | 45.393 | 445 | 141 | 16 | 1 | 431 | 1 | 357 | 9.80e-104 | 315 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1107810 | A0A072U0F7 | 96.330 | 436 | 13 | 2 | 1 | 435 | 1 | 434 | 0.0 | 851 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0826320 | Msa1107810 | -0.801589 | 8.385444e-49 | -8.615850e-47 |
Msa0834660 | Msa1107810 | -0.822757 | 1.997230e-53 | -8.615850e-47 |
Msa0145190 | Msa1107810 | -0.813137 | 2.981092e-51 | -8.615850e-47 |
Msa0201070 | Msa1107810 | -0.823398 | 1.415480e-53 | -8.615850e-47 |
Msa0460850 | Msa1107810 | 0.814450 | 1.531401e-51 | -8.615850e-47 |
Msa1107810 | Msa1287370 | 0.827816 | 1.269492e-54 | -8.615850e-47 |
Msa0537720 | Msa1107810 | -0.819208 | 1.310372e-52 | -8.615850e-47 |
Msa0886330 | Msa1107810 | 0.815073 | 1.114484e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1107810 | MtrunA17_Chr7g0235691 | 96.330 | 436 | 13 | 2 | 1 | 435 | 1 | 434 | 0.0 | 851 |
Msa1107810 | MtrunA17_Chr7g0241531 | 95.862 | 435 | 17 | 1 | 1 | 435 | 1 | 434 | 0.0 | 850 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1107810 | AT5G01160.2 | 45.393 | 445 | 141 | 16 | 1 | 431 | 1 | 357 | 9.96e-105 | 315 |
Msa1107810 | AT5G01160.1 | 45.393 | 445 | 141 | 16 | 1 | 431 | 1 | 357 | 9.96e-105 | 315 |
Find 170 sgRNAs with CRISPR-Local
Find 338 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGATAATTTCCTTGAAAATT+TGG | 0.121213 | 7_3:+50083216 | None:intergenic |
GGGTAACCCATTAATGAATT+TGG | 0.140474 | 7_3:+50083258 | None:intergenic |
GCTGGAGGTGGTGGTGGTGG+TGG | 0.195575 | 7_3:+50083084 | None:intergenic |
CAGCATTGGGTTTGGGTGTG+GGG | 0.211301 | 7_3:+50083395 | None:intergenic |
CTGCAATTTCTATTACATTT+TGG | 0.212596 | 7_3:-50082906 | Msa1107810:three_prime_UTR |
CCTTGAAAATTTGGGCCATT+TGG | 0.235231 | 7_3:+50083225 | None:intergenic |
CTTTGATAGTCTGAATCTTC+TGG | 0.237309 | 7_3:+50083937 | None:intergenic |
TTCAGCATTGGGTTTGGGTG+TGG | 0.242330 | 7_3:+50083393 | None:intergenic |
TGCTGCATTGCTGGCCTTGA+AGG | 0.252713 | 7_3:+50083633 | None:intergenic |
GGAACATTGGTGGGTTGTGC+AGG | 0.262651 | 7_3:+50083417 | None:intergenic |
CCGTCTTCTTTATCTGCATT+GGG | 0.270406 | 7_3:+50083807 | None:intergenic |
TGGAGACCCAAATTCATTAA+TGG | 0.271048 | 7_3:-50083265 | Msa1107810:CDS |
ACCTCTTTGGTAAACAATAA+AGG | 0.272668 | 7_3:+50082844 | None:intergenic |
GTGGGTTCAGCATTGGGTTT+GGG | 0.273827 | 7_3:+50083388 | None:intergenic |
GATAGTCGTGACAGCTTTAA+TGG | 0.284126 | 7_3:-50082991 | Msa1107810:CDS |
CTTGAAAATTTGGGCCATTT+GGG | 0.284682 | 7_3:+50083226 | None:intergenic |
ATCAATGTAATACTTCAAAT+TGG | 0.285550 | 7_3:+50086550 | None:intergenic |
AGGAACACCTGCTGCATTCC+AGG | 0.286287 | 7_3:+50083188 | None:intergenic |
TCAGCATTGGGTTTGGGTGT+GGG | 0.290806 | 7_3:+50083394 | None:intergenic |
GGTGGGTTCAGCATTGGGTT+TGG | 0.296312 | 7_3:+50083387 | None:intergenic |
AAGGAGGAGCGTGAGTAATT+TGG | 0.297567 | 7_3:-50086584 | Msa1107810:five_prime_UTR |
TGGGCTGGAGGTGGTGGTGG+TGG | 0.299780 | 7_3:+50083081 | None:intergenic |
TCCGTCTTCTTTATCTGCAT+TGG | 0.301508 | 7_3:+50083806 | None:intergenic |
TTGAAGTATTACATTGATAA+AGG | 0.306296 | 7_3:-50086545 | Msa1107810:five_prime_UTR |
CTACTGCTTCTTCTGTTGTT+AGG | 0.324947 | 7_3:-50086352 | Msa1107810:CDS |
AATGAGGAGCTGCACATATT+AGG | 0.326464 | 7_3:+50083901 | None:intergenic |
ATGGTTGAGCTCGGTCTTGC+GGG | 0.329657 | 7_3:+50083340 | None:intergenic |
GAAGATCGGCGTGGAATTCA+TGG | 0.334875 | 7_3:+50083835 | None:intergenic |
GATAATTTCCTTGAAAATTT+GGG | 0.339902 | 7_3:+50083217 | None:intergenic |
ACCTGCTGCATTCCAGGGCT+GGG | 0.348172 | 7_3:+50083194 | None:intergenic |
CACCTGCTGCATTCCAGGGC+TGG | 0.351191 | 7_3:+50083193 | None:intergenic |
ATGTGGGCTGGAGGTGGTGG+TGG | 0.352143 | 7_3:+50083078 | None:intergenic |
GGTAACCCATTAATGAATTT+GGG | 0.353294 | 7_3:+50083259 | None:intergenic |
GGTTGCCTGCCCTGACCATT+TGG | 0.364740 | 7_3:-50086414 | Msa1107810:CDS |
GGTTGTGCAGGGTGCATTGT+TGG | 0.367244 | 7_3:+50083429 | None:intergenic |
TGAGCTCGGTCTTGCGGGAA+AGG | 0.367370 | 7_3:+50083345 | None:intergenic |
CTTGAAGGAGCTTGATCTCT+TGG | 0.368073 | 7_3:+50083648 | None:intergenic |
AAGGGATTCCAAAGGTATAT+TGG | 0.369838 | 7_3:-50083127 | Msa1107810:CDS |
GGCCATTTGGGACCCCTTGT+GGG | 0.369999 | 7_3:+50083238 | None:intergenic |
CTTCAATTTGAACCGCTTTG+AGG | 0.371089 | 7_3:+50087246 | None:intergenic |
GGAGACCCAAATTCATTAAT+GGG | 0.371180 | 7_3:-50083264 | Msa1107810:CDS |
CTTCCTGTTGCAAAGGGTAT+TGG | 0.371327 | 7_3:-50086380 | Msa1107810:CDS |
GGTGGTGGTGGGAGAGCCAT+GGG | 0.371510 | 7_3:+50083096 | None:intergenic |
TGATCACCAGGATAGTAGTT+TGG | 0.374252 | 7_3:+50083048 | None:intergenic |
GCACAGGTGGGTTCAGCATT+GGG | 0.376338 | 7_3:+50083382 | None:intergenic |
TCATAGGGAGCAGCATAAAA+TGG | 0.377461 | 7_3:+50083321 | None:intergenic |
TGGTGGTGGTGGGAGAGCCA+TGG | 0.377827 | 7_3:+50083095 | None:intergenic |
TACTCAGGAAATGAGTTATC+TGG | 0.380101 | 7_3:+50083453 | None:intergenic |
TTGGAAAACTTGGAATAATA+TGG | 0.389238 | 7_3:-50082757 | Msa1107810:three_prime_UTR |
GCACCTTGTGCTTGTTCAAA+AGG | 0.397515 | 7_3:+50083168 | None:intergenic |
GGTGGGAGAGCCATGGGCTG+TGG | 0.398629 | 7_3:+50083102 | None:intergenic |
CAAGAGATCAAGCTCCTTCA+AGG | 0.403818 | 7_3:-50083647 | Msa1107810:CDS |
AACATGTGGGCTGGAGGTGG+TGG | 0.407874 | 7_3:+50083075 | None:intergenic |
CAGGACTCGTCTTCTGATAT+TGG | 0.415458 | 7_3:-50083288 | Msa1107810:CDS |
AACTACTATCCTGGTGATCA+TGG | 0.417309 | 7_3:-50083045 | Msa1107810:CDS |
GAGCTCGGTCTTGCGGGAAA+GGG | 0.418923 | 7_3:+50083346 | None:intergenic |
GATCTCTTGGTGGTTGCCGA+CGG | 0.430969 | 7_3:+50083661 | None:intergenic |
ATTGAAATATGCTTCAGATT+CGG | 0.433005 | 7_3:-50086502 | Msa1107810:exon |
ACCGACAGGCAGCAATCAAT+TGG | 0.433748 | 7_3:-50083477 | Msa1107810:CDS |
AGAGAAATGACATGAATGAT+AGG | 0.433981 | 7_3:+50082950 | None:intergenic |
TTCAACATGTGGGCTGGAGG+TGG | 0.434246 | 7_3:+50083072 | None:intergenic |
GGCACAGGTGGGTTCAGCAT+TGG | 0.438653 | 7_3:+50083381 | None:intergenic |
ATCTCTTGGTGGTTGCCGAC+GGG | 0.438811 | 7_3:+50083662 | None:intergenic |
ATCGAATGTGTTGGAAAACT+TGG | 0.439617 | 7_3:-50082767 | Msa1107810:three_prime_UTR |
CTGGTATGGCTGTGGATCCA+AGG | 0.444179 | 7_3:-50083146 | Msa1107810:CDS |
TGCTGATCTTCCTGTTGCAA+AGG | 0.449994 | 7_3:-50086387 | Msa1107810:CDS |
TCAGCAAGGACCAAATGGTC+AGG | 0.454307 | 7_3:+50086404 | None:intergenic |
TAAACTGAACAGGTTCTTGT+GGG | 0.455113 | 7_3:+50083499 | None:intergenic |
GTACCAATACCCTTTGCAAC+AGG | 0.456253 | 7_3:+50086377 | None:intergenic |
GGGCCATTTGGGACCCCTTG+TGG | 0.457407 | 7_3:+50083237 | None:intergenic |
TGCCTGTCGGTAAACTGAAC+AGG | 0.458587 | 7_3:+50083489 | None:intergenic |
TCCTTTATTGTTTACCAAAG+AGG | 0.458712 | 7_3:-50082845 | Msa1107810:three_prime_UTR |
GCTGATCTTCCTGTTGCAAA+GGG | 0.461785 | 7_3:-50086386 | Msa1107810:CDS |
GGACATGATGGTCAAGGTTA+TGG | 0.463050 | 7_3:-50083024 | Msa1107810:CDS |
TTTAATGGTCAAGGCTGATA+AGG | 0.463161 | 7_3:-50082976 | Msa1107810:exon |
TTTGGTTTCAACATGTGGGC+TGG | 0.470551 | 7_3:+50083066 | None:intergenic |
AGCTCGGTCTTGCGGGAAAG+GGG | 0.473849 | 7_3:+50083347 | None:intergenic |
CTGAACCCACCTGTGCCATT+TGG | 0.475075 | 7_3:-50083375 | Msa1107810:CDS |
GAACATTGGTGGGTTGTGCA+GGG | 0.476226 | 7_3:+50083418 | None:intergenic |
AAATTCTCAACATCATGATC+TGG | 0.477320 | 7_3:-50083694 | Msa1107810:CDS |
AATATACCTTTGGAATCCCT+TGG | 0.478258 | 7_3:+50083129 | None:intergenic |
CTAGAATCGTCAAATGAGAA+TGG | 0.478826 | 7_3:-50082791 | Msa1107810:three_prime_UTR |
GTTGAATTGCAGAACGAAGA+AGG | 0.479730 | 7_3:-50087274 | Msa1107810:five_prime_UTR |
GTCCTGCCTAGACATATCAT+AGG | 0.482722 | 7_3:+50083305 | None:intergenic |
AGCATTGGGTTTGGGTGTGG+GGG | 0.486521 | 7_3:+50083396 | None:intergenic |
CCATCCTCTGATGGGTCGGC+AGG | 0.488214 | 7_3:-50086467 | Msa1107810:CDS |
GAAGGAGCTTGATCTCTTGG+TGG | 0.489730 | 7_3:+50083651 | None:intergenic |
CTCGCTCACCAAGCTGGCGA+CGG | 0.489987 | 7_3:+50086312 | None:intergenic |
TACCCACAAGGGGTCCCAAA+TGG | 0.492495 | 7_3:-50083240 | Msa1107810:CDS |
TTGAAACCAAACTACTATCC+TGG | 0.500802 | 7_3:-50083054 | Msa1107810:CDS |
GAAGATCAGCAAGGACCAAA+TGG | 0.503230 | 7_3:+50086399 | None:intergenic |
AGTAAGAATCCATCCTCTGA+TGG | 0.503238 | 7_3:-50086476 | Msa1107810:CDS |
TGCATTGGGGCGAAGAAGAT+CGG | 0.503512 | 7_3:+50083821 | None:intergenic |
CTGTGGTGCCAATATACCTT+TGG | 0.504496 | 7_3:+50083119 | None:intergenic |
TCGCTCACCAAGCTGGCGAC+GGG | 0.507248 | 7_3:+50086313 | None:intergenic |
TCTTCTGTTGTTAGGAACGT+GGG | 0.507729 | 7_3:-50086344 | Msa1107810:CDS |
TTTGAACAAGCACAAGGTGC+TGG | 0.508460 | 7_3:-50083165 | Msa1107810:CDS |
CCCCAGCCCTGGAATGCAGC+AGG | 0.510080 | 7_3:-50083195 | Msa1107810:CDS |
AAGGAAATTATCCCCAGCCC+TGG | 0.511237 | 7_3:-50083206 | Msa1107810:CDS |
GATTCCATGTCTTGTTCTGT+CGG | 0.512644 | 7_3:-50083573 | Msa1107810:CDS |
CTGCTCCCTATGATATGTCT+AGG | 0.513736 | 7_3:-50083311 | Msa1107810:CDS |
AGCCTTCCATAAATCGCAAT+CGG | 0.515681 | 7_3:+50086263 | None:intergenic |
GGGTGCATTGTTGGATACTC+AGG | 0.520311 | 7_3:+50083438 | None:intergenic |
CCATCATGTCCATGATCACC+AGG | 0.520401 | 7_3:+50083036 | None:intergenic |
AGTAGTTTGGTTTCAACATG+TGG | 0.520682 | 7_3:+50083061 | None:intergenic |
GCAACCGTAACAGTCTCAAC+AGG | 0.527112 | 7_3:+50086431 | None:intergenic |
GGTTTCAACATGTGGGCTGG+AGG | 0.527232 | 7_3:+50083069 | None:intergenic |
TCCCTATGATATGTCTAGGC+AGG | 0.530889 | 7_3:-50083307 | Msa1107810:CDS |
GCCTCGAGCAGTGGAGTCTG+AGG | 0.531560 | 7_3:+50083746 | None:intergenic |
TTCTTCTGTTGTTAGGAACG+TGG | 0.532955 | 7_3:-50086345 | Msa1107810:CDS |
AAGGACCAAATGGTCAGGGC+AGG | 0.533168 | 7_3:+50086409 | None:intergenic |
GGATAACCAAATGGCACAGG+TGG | 0.535200 | 7_3:+50083369 | None:intergenic |
AATGGTTGAGCTCGGTCTTG+CGG | 0.535415 | 7_3:+50083339 | None:intergenic |
GACTCGTCTTCTGATATTGG+TGG | 0.536749 | 7_3:-50083285 | Msa1107810:CDS |
AATGAACTCGCTCACCAAGC+TGG | 0.540474 | 7_3:+50086306 | None:intergenic |
GATTGCGATTTATGGAAGGC+TGG | 0.540765 | 7_3:-50086261 | Msa1107810:intron |
GGAACACCTGCTGCATTCCA+GGG | 0.546459 | 7_3:+50083189 | None:intergenic |
TTCCGATTGCGATTTATGGA+AGG | 0.551908 | 7_3:-50086265 | Msa1107810:CDS |
TGATGTTGAGAATTTGAACC+TGG | 0.554957 | 7_3:+50083702 | None:intergenic |
CGTGACAGCTTTAATGGTCA+AGG | 0.563604 | 7_3:-50082985 | Msa1107810:CDS |
ATCACCTGTTGAGACTGTTA+CGG | 0.563605 | 7_3:-50086435 | Msa1107810:CDS |
TCATTAATGGGTTACCCACA+AGG | 0.563876 | 7_3:-50083252 | Msa1107810:CDS |
GAGAATGGAATCGAATGTGT+TGG | 0.564119 | 7_3:-50082776 | Msa1107810:three_prime_UTR |
GATTCAGACTATCAAAGTGA+TGG | 0.568943 | 7_3:-50083931 | Msa1107810:CDS |
AGACAGAAAGCATGGTCACA+AGG | 0.569461 | 7_3:+50085367 | None:intergenic |
GTAAGAATCCATCCTCTGAT+GGG | 0.571956 | 7_3:-50086475 | Msa1107810:CDS |
ACAAGCACAAGGTGCTGGTA+TGG | 0.572221 | 7_3:-50083160 | Msa1107810:CDS |
CGTCTTCTTTATCTGCATTG+GGG | 0.576168 | 7_3:+50083808 | None:intergenic |
AACTGAACAGGTTCTTGTGG+GGG | 0.577843 | 7_3:+50083501 | None:intergenic |
AACCTGTTCAGTTTACCGAC+AGG | 0.578186 | 7_3:-50083491 | Msa1107810:CDS |
CCTGCTGCATTCCAGGGCTG+GGG | 0.580828 | 7_3:+50083195 | None:intergenic |
GCCTCAGACTCCACTGCTCG+AGG | 0.582998 | 7_3:-50083747 | Msa1107810:CDS |
CAGCATAAAATGGTTGAGCT+CGG | 0.584595 | 7_3:+50083331 | None:intergenic |
CATTAATGGGTTACCCACAA+GGG | 0.586355 | 7_3:-50083251 | Msa1107810:CDS |
CCCAATGCAGATAAAGAAGA+CGG | 0.586916 | 7_3:-50083807 | Msa1107810:CDS |
CACAATCAAGACAGAAAGCA+TGG | 0.589417 | 7_3:+50085359 | None:intergenic |
TATATTGGCACCACAGCCCA+TGG | 0.593045 | 7_3:-50083112 | Msa1107810:CDS |
GAATCCATCCTCTGATGGGT+CGG | 0.593309 | 7_3:-50086471 | Msa1107810:CDS |
TCCTGCCTAGACATATCATA+GGG | 0.595437 | 7_3:+50083306 | None:intergenic |
GAACAAGACATGGAATCTGA+AGG | 0.597386 | 7_3:+50083579 | None:intergenic |
GTAGTTTGGTTTCAACATGT+GGG | 0.598197 | 7_3:+50083062 | None:intergenic |
AAACTGAACAGGTTCTTGTG+GGG | 0.598299 | 7_3:+50083500 | None:intergenic |
GCTCGGTCTTGCGGGAAAGG+GGG | 0.598520 | 7_3:+50083348 | None:intergenic |
ATGATGGTCAAGGTTATGGT+TGG | 0.600746 | 7_3:-50083020 | Msa1107810:CDS |
TCCATGTCTTGTTCTGTCGG+AGG | 0.602543 | 7_3:-50083570 | Msa1107810:CDS |
CCTGCCGACCCATCAGAGGA+TGG | 0.603028 | 7_3:+50086467 | None:intergenic |
TCCTTGGTACACAGGTGTGA+AGG | 0.607570 | 7_3:-50083966 | Msa1107810:intron |
TGGTATGGCTGTGGATCCAA+GGG | 0.610276 | 7_3:-50083145 | Msa1107810:CDS |
CCTGGTGATCATGGACATGA+TGG | 0.612495 | 7_3:-50083036 | Msa1107810:CDS |
AATCTGAAGGGTGATGTTGT+TGG | 0.613708 | 7_3:+50083592 | None:intergenic |
CAGACTATCAAAGTGATGGA+AGG | 0.614344 | 7_3:-50083927 | Msa1107810:CDS |
GTAAACTGAACAGGTTCTTG+TGG | 0.615838 | 7_3:+50083498 | None:intergenic |
ACCAATTGATTGCTGCCTGT+CGG | 0.620690 | 7_3:+50083476 | None:intergenic |
AAGAATGACTTGAGACAATG+AGG | 0.625934 | 7_3:+50083885 | None:intergenic |
GCAGTGGAGTCTGAGGCTGT+AGG | 0.627157 | 7_3:+50083753 | None:intergenic |
GACAGAAAGCATGGTCACAA+GGG | 0.629410 | 7_3:+50085368 | None:intergenic |
CAGCAAGGACCAAATGGTCA+GGG | 0.633007 | 7_3:+50086405 | None:intergenic |
TCTGTCGGAGGTATGCAGCA+GGG | 0.633543 | 7_3:-50083558 | Msa1107810:CDS |
AACAAGACATGGAATCTGAA+GGG | 0.636590 | 7_3:+50083580 | None:intergenic |
ACCTCCGACAGAACAAGACA+TGG | 0.637480 | 7_3:+50083569 | None:intergenic |
ACAAGGTGCTGGTATGGCTG+TGG | 0.639763 | 7_3:-50083154 | Msa1107810:CDS |
ATTAATGGGTTACCCACAAG+GGG | 0.640262 | 7_3:-50083250 | Msa1107810:CDS |
GATAACCAAATGGCACAGGT+GGG | 0.645127 | 7_3:+50083370 | None:intergenic |
ACTGAACAGGTTCTTGTGGG+GGG | 0.661044 | 7_3:+50083502 | None:intergenic |
GTGGATCCAAGGGATTCCAA+AGG | 0.678283 | 7_3:-50083135 | Msa1107810:CDS |
GATCATGGACATGATGGTCA+AGG | 0.690856 | 7_3:-50083030 | Msa1107810:CDS |
ATCTGGAAGACAGAACCCGT+CGG | 0.695194 | 7_3:-50083677 | Msa1107810:CDS |
TTGCAACAGGAAGATCAGCA+AGG | 0.700122 | 7_3:+50086390 | None:intergenic |
TGGGGCGAAGAAGATCGGCG+TGG | 0.733508 | 7_3:+50083826 | None:intergenic |
AAGAAGGAAGAGCCTCAAAG+CGG | 0.745454 | 7_3:-50087258 | Msa1107810:five_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGATTAGTTTTTTTTTTTTA+AGG | - | chr7_3:50082786-50082805 | Msa1107810:three_prime_UTR | 10.0% |
!!! | ATTTTTGTTTTGAATATAAA+GGG | + | chr7_3:50083006-50083025 | None:intergenic | 10.0% |
!!! | TATTTTTGTTTTGAATATAA+AGG | + | chr7_3:50083007-50083026 | None:intergenic | 10.0% |
!! | TATTGATATGTATAAAAATT+TGG | - | chr7_3:50083252-50083271 | Msa1107810:CDS | 10.0% |
!!! | ATATATTACTTTTACTATAA+TGG | - | chr7_3:50084443-50084462 | Msa1107810:intron | 10.0% |
!!! | ATATATTACTTTTACTATAA+TGG | - | chr7_3:50084443-50084462 | Msa1107810:intron | 10.0% |
!!! | TATTAAAAAACTTGAATTTT+TGG | - | chr7_3:50086015-50086034 | Msa1107810:intron | 10.0% |
!!! | ATTAAAAAACTTGAATTTTT+GGG | - | chr7_3:50086016-50086035 | Msa1107810:intron | 10.0% |
!! | TAAACCCTAAATTAAAAAAA+GGG | + | chr7_3:50083037-50083056 | None:intergenic | 15.0% |
!! | ATAAACCCTAAATTAAAAAA+AGG | + | chr7_3:50083038-50083057 | None:intergenic | 15.0% |
!!! | TTTTAATTTAGGGTTTATTT+AGG | - | chr7_3:50083040-50083059 | Msa1107810:CDS | 15.0% |
!!! | TTTAATTTAGGGTTTATTTA+GGG | - | chr7_3:50083041-50083060 | Msa1107810:CDS | 15.0% |
!! | TTTAAGAAAACAAATGAAAA+AGG | + | chr7_3:50083428-50083447 | None:intergenic | 15.0% |
!!! | TAAGATATTTCTATAACAAA+AGG | + | chr7_3:50084132-50084151 | None:intergenic | 15.0% |
!! | TATAAACACTTATCATATAA+GGG | + | chr7_3:50084163-50084182 | None:intergenic | 15.0% |
!! | ATATAAACACTTATCATATA+AGG | + | chr7_3:50084164-50084183 | None:intergenic | 15.0% |
!! | CTATAAACATTTAATAAAGT+TGG | - | chr7_3:50084185-50084204 | Msa1107810:intron | 15.0% |
!! | ATGAAAATAATAATGTACAA+AGG | + | chr7_3:50085125-50085144 | None:intergenic | 15.0% |
!! | ATTTATAAAATGATATCAAG+TGG | - | chr7_3:50085492-50085511 | Msa1107810:intron | 15.0% |
!! | ATATTGTTTGTATGTTAAAA+AGG | - | chr7_3:50086125-50086144 | Msa1107810:intron | 15.0% |
!! | TATTGTTTGTATGTTAAAAA+GGG | - | chr7_3:50086126-50086145 | Msa1107810:intron | 15.0% |
!!! | TTTTGAAGAAAGATTAATTG+CGG | + | chr7_3:50082959-50082978 | None:intergenic | 20.0% |
!! | AAACCCTAAATTAAAAAAAG+GGG | + | chr7_3:50083036-50083055 | None:intergenic | 20.0% |
!!! | TTTTATTTGATTCATGTTTC+TGG | - | chr7_3:50083213-50083232 | Msa1107810:CDS | 20.0% |
!! | TTTATTTGATTCATGTTTCT+GGG | - | chr7_3:50083214-50083233 | Msa1107810:CDS | 20.0% |
!!! | TGCTTTTTTTATTGTTGATT+TGG | - | chr7_3:50083516-50083535 | Msa1107810:CDS | 20.0% |
!!! | TTTTATTGTTGATTTGGTAA+AGG | - | chr7_3:50083522-50083541 | Msa1107810:CDS | 20.0% |
!! | ATCAATGTAATACTTCAAAT+TGG | + | chr7_3:50083578-50083597 | None:intergenic | 20.0% |
!!! | TTGAAGTATTACATTGATAA+AGG | - | chr7_3:50083580-50083599 | Msa1107810:CDS | 20.0% |
!! | ATACTAGTTACCTTTATATT+TGG | - | chr7_3:50083985-50084004 | Msa1107810:intron | 20.0% |
!! | TACTAGTTACCTTTATATTT+GGG | - | chr7_3:50083986-50084005 | Msa1107810:intron | 20.0% |
!! | AGTAAAAGTAATATATTACG+AGG | + | chr7_3:50084396-50084415 | None:intergenic | 20.0% |
!! | AGTAAAAGTAATATATTACG+AGG | + | chr7_3:50084396-50084415 | None:intergenic | 20.0% |
!! | AGTAAAAGTAATATATTACG+AGG | + | chr7_3:50084396-50084415 | None:intergenic | 20.0% |
!!! | TAAAATTTTGACTTTGATAG+TGG | - | chr7_3:50084649-50084668 | Msa1107810:intron | 20.0% |
!!! | AAAATTTTGACTTTGATAGT+GGG | - | chr7_3:50084650-50084669 | Msa1107810:intron | 20.0% |
!! | AAGATAAGAAAAATACTTAC+AGG | + | chr7_3:50084814-50084833 | None:intergenic | 20.0% |
!! | TTTACAAAACAACTAAAAGA+GGG | + | chr7_3:50084995-50085014 | None:intergenic | 20.0% |
!! | ATTTACAAAACAACTAAAAG+AGG | + | chr7_3:50084996-50085015 | None:intergenic | 20.0% |
!!! | TAGGTGAATAATATTTCTAT+CGG | - | chr7_3:50085083-50085102 | Msa1107810:intron | 20.0% |
!! | AATAATAATGTACAAAGGAA+AGG | + | chr7_3:50085120-50085139 | None:intergenic | 20.0% |
!! | CATTAAATTTGATTACTCTA+TGG | - | chr7_3:50085142-50085161 | Msa1107810:intron | 20.0% |
!!! | GAATTTTAAAATTGAGAGTA+CGG | - | chr7_3:50085547-50085566 | Msa1107810:intron | 20.0% |
!!! | AGTTTTTTAATATAAGCATG+TGG | + | chr7_3:50086007-50086026 | None:intergenic | 20.0% |
!! | GATAATTTCCTTGAAAATTT+GGG | + | chr7_3:50086911-50086930 | None:intergenic | 20.0% |
!!! | AAAATTTTCTATTACCTCTT+TGG | + | chr7_3:50087297-50087316 | None:intergenic | 20.0% |
!!! | TGTTTTGAATATAAAGGGTT+TGG | + | chr7_3:50083001-50083020 | None:intergenic | 25.0% |
!!! | AATCCCCCTTTTTTTAATTT+AGG | - | chr7_3:50083029-50083048 | Msa1107810:CDS | 25.0% |
!!! | ATCCCCCTTTTTTTAATTTA+GGG | - | chr7_3:50083030-50083049 | Msa1107810:CDS | 25.0% |
! | AACCCTAAATTAAAAAAAGG+GGG | + | chr7_3:50083035-50083054 | None:intergenic | 25.0% |
!! | ATCGAATTCGATGTAATTTT+TGG | + | chr7_3:50083082-50083101 | None:intergenic | 25.0% |
! | TCATTGGATAGAGATAAAAT+GGG | + | chr7_3:50083106-50083125 | None:intergenic | 25.0% |
! | ATCATTGGATAGAGATAAAA+TGG | + | chr7_3:50083107-50083126 | None:intergenic | 25.0% |
! | TAAGACAACATTCATATCAT+TGG | + | chr7_3:50083122-50083141 | None:intergenic | 25.0% |
! | AATGATATGAATGTTGTCTT+AGG | - | chr7_3:50083121-50083140 | Msa1107810:CDS | 25.0% |
! | ATTGAAATATGCTTCAGATT+CGG | - | chr7_3:50083623-50083642 | Msa1107810:CDS | 25.0% |
!!! | TCTAACCTGTTTTTTCATTT+AGG | - | chr7_3:50083904-50083923 | Msa1107810:CDS | 25.0% |
!!! | AATTTTTTGGAATGAACACA+TGG | + | chr7_3:50084234-50084253 | None:intergenic | 25.0% |
!!! | TGTTTCTGCAATGAATTTTT+TGG | + | chr7_3:50084247-50084266 | None:intergenic | 25.0% |
!! | GTTGCATTTTATCAGAAATT+TGG | - | chr7_3:50084563-50084582 | Msa1107810:intron | 25.0% |
!!! | GTTTAGTTTGTTTTGTGATT+TGG | - | chr7_3:50084616-50084635 | Msa1107810:intron | 25.0% |
! | TTACAAAACAACTAAAAGAG+GGG | + | chr7_3:50084994-50085013 | None:intergenic | 25.0% |
! | AATATTATTCACCTATTGAC+TGG | + | chr7_3:50085078-50085097 | None:intergenic | 25.0% |
! | CAGTAAAATAGATACTAGAA+TGG | - | chr7_3:50085368-50085387 | Msa1107810:CDS | 25.0% |
!! | ACTAAAGTACTAAACTCTAA+TGG | - | chr7_3:50085831-50085850 | Msa1107810:intron | 25.0% |
! | TCCACTAATAAAAAGCTTAA+TGG | - | chr7_3:50085882-50085901 | Msa1107810:intron | 25.0% |
!! | ACCATTAAGCTTTTTATTAG+TGG | + | chr7_3:50085886-50085905 | None:intergenic | 25.0% |
!! | GATTATGTTTTGCAATTGAT+AGG | - | chr7_3:50086069-50086088 | Msa1107810:intron | 25.0% |
! | GGATAATTTCCTTGAAAATT+TGG | + | chr7_3:50086912-50086931 | None:intergenic | 25.0% |
!! | CTGCAATTTCTATTACATTT+TGG | - | chr7_3:50087219-50087238 | Msa1107810:five_prime_UTR | 25.0% |
! | TTGGAAAACTTGGAATAATA+TGG | - | chr7_3:50087368-50087387 | Msa1107810:five_prime_UTR | 25.0% |
CATTGGATAGAGATAAAATG+GGG | + | chr7_3:50083105-50083124 | None:intergenic | 30.0% | |
AAAGTCAGACATATCAATGA+TGG | - | chr7_3:50083332-50083351 | Msa1107810:CDS | 30.0% | |
!! | TATTGTTGATTTGGTAAAGG+AGG | - | chr7_3:50083525-50083544 | Msa1107810:CDS | 30.0% |
AGAAGCCTAAATGAAAAAAC+AGG | + | chr7_3:50083912-50083931 | None:intergenic | 30.0% | |
TTACCTTTATATTTGGGCTT+AGG | - | chr7_3:50083992-50084011 | Msa1107810:intron | 30.0% | |
TACCTTTATATTTGGGCTTA+GGG | - | chr7_3:50083993-50084012 | Msa1107810:intron | 30.0% | |
AAAAGTCAACACCAAATCAA+AGG | + | chr7_3:50084359-50084378 | None:intergenic | 30.0% | |
! | TTTTCTAATAGCTACCTCAA+TGG | + | chr7_3:50084866-50084885 | None:intergenic | 30.0% |
! | CTTTTCATTTTCCAGTCAAT+AGG | - | chr7_3:50085064-50085083 | Msa1107810:intron | 30.0% |
! | GTATCTATTTTACTGCAAAG+TGG | + | chr7_3:50085363-50085382 | None:intergenic | 30.0% |
! | TATATCTGAGACAAAACACA+AGG | + | chr7_3:50085423-50085442 | None:intergenic | 30.0% |
!! | GCTGAAGAACTTTTTGTTTA+AGG | - | chr7_3:50085462-50085481 | Msa1107810:intron | 30.0% |
CTAGAGTTTGGAAAAAATCT+AGG | - | chr7_3:50085516-50085535 | Msa1107810:intron | 30.0% | |
! | TGAGTCTTATGACTTATGAT+AGG | + | chr7_3:50085663-50085682 | None:intergenic | 30.0% |
TTTACTCAGTTAGTTCAGTT+AGG | + | chr7_3:50085706-50085725 | None:intergenic | 30.0% | |
TATCTGGATATAAGCTATCA+TGG | + | chr7_3:50085794-50085813 | None:intergenic | 30.0% | |
AAATTCTCAACATCATGATC+TGG | - | chr7_3:50086431-50086450 | Msa1107810:CDS | 30.0% | |
GGTAACCCATTAATGAATTT+GGG | + | chr7_3:50086869-50086888 | None:intergenic | 30.0% | |
AGAGAAATGACATGAATGAT+AGG | + | chr7_3:50087178-50087197 | None:intergenic | 30.0% | |
TCCTTTATTGTTTACCAAAG+AGG | - | chr7_3:50087280-50087299 | Msa1107810:five_prime_UTR | 30.0% | |
ACCTCTTTGGTAAACAATAA+AGG | + | chr7_3:50087284-50087303 | None:intergenic | 30.0% | |
CCTTGTACTGAATCTATACA+CGG | + | chr7_3:50083388-50083407 | None:intergenic | 35.0% | |
CGTGTATAGATTCAGTACAA+GGG | - | chr7_3:50083386-50083405 | Msa1107810:CDS | 35.0% | |
! | GATTTTCCGATTGCGATTTA+TGG | - | chr7_3:50083856-50083875 | Msa1107810:CDS | 35.0% |
AACCCTAAGCCCAAATATAA+AGG | + | chr7_3:50083998-50084017 | None:intergenic | 35.0% | |
!! | CTTTTACTATAATGGCCTTG+TGG | - | chr7_3:50084451-50084470 | Msa1107810:intron | 35.0% |
ATATTACGAGGTAAACCACA+AGG | + | chr7_3:50084469-50084488 | None:intergenic | 35.0% | |
!! | CTTTTACTATAATGGCCTTG+TGG | - | chr7_3:50084451-50084470 | Msa1107810:intron | 35.0% |
TGCTAAAGAACAAAACCACA+AGG | + | chr7_3:50084511-50084530 | None:intergenic | 35.0% | |
! | AACTAAACCACCTTTTGATG+CGG | + | chr7_3:50084604-50084623 | None:intergenic | 35.0% |
CAAGGAAACTAACAAGTTCT+AGG | + | chr7_3:50084702-50084721 | None:intergenic | 35.0% | |
! | CTTGTTAGTTTCCTTGATGT+TGG | - | chr7_3:50084706-50084725 | Msa1107810:intron | 35.0% |
!! | CTTGATGTTGGCTTACTATA+GGG | - | chr7_3:50084718-50084737 | Msa1107810:intron | 35.0% |
TCAACAAGTGGAAAAGTAGA+GGG | + | chr7_3:50085217-50085236 | None:intergenic | 35.0% | |
TAGAATGATGACTCAACAAG+TGG | + | chr7_3:50085229-50085248 | None:intergenic | 35.0% | |
TAAAATCTGCCCACTTGAAT+AGG | - | chr7_3:50085290-50085309 | Msa1107810:intron | 35.0% | |
! | CCATTTTCACCTATTCAAGT+GGG | + | chr7_3:50085302-50085321 | None:intergenic | 35.0% |
! | ACCATTTTCACCTATTCAAG+TGG | + | chr7_3:50085303-50085322 | None:intergenic | 35.0% |
! | ATATCAAGTGGTCTAGAGTT+TGG | - | chr7_3:50085504-50085523 | Msa1107810:intron | 35.0% |
CGTATAGTAGCAGAAATATC+TGG | + | chr7_3:50085810-50085829 | None:intergenic | 35.0% | |
!! | AGCTTTTTATTAGTGGACAC+TGG | + | chr7_3:50085879-50085898 | None:intergenic | 35.0% |
GTTGCATTATGCATGCTTTA+AGG | - | chr7_3:50085937-50085956 | Msa1107810:intron | 35.0% | |
TTTATCACGAAAGAGCCTAT+TGG | + | chr7_3:50085963-50085982 | None:intergenic | 35.0% | |
AACCTTAATGTTGACCTTCA+GGG | - | chr7_3:50086047-50086066 | Msa1107810:intron | 35.0% | |
TTGCAAAACATAATCCCTGA+AGG | + | chr7_3:50086064-50086083 | None:intergenic | 35.0% | |
TTTGCAATTGATAGGTTCCA+TGG | - | chr7_3:50086077-50086096 | Msa1107810:intron | 35.0% | |
TTGCAATTGATAGGTTCCAT+GGG | - | chr7_3:50086078-50086097 | Msa1107810:intron | 35.0% | |
GAAAAGATAACTTCTACCCA+TGG | + | chr7_3:50086097-50086116 | None:intergenic | 35.0% | |
! | AAAGGGTTTTTCATCTTCCT+TGG | - | chr7_3:50086143-50086162 | Msa1107810:intron | 35.0% |
! | CTTTGATAGTCTGAATCTTC+TGG | + | chr7_3:50086191-50086210 | None:intergenic | 35.0% |
GATTCAGACTATCAAAGTGA+TGG | - | chr7_3:50086194-50086213 | Msa1107810:intron | 35.0% | |
AAGAATGACTTGAGACAATG+AGG | + | chr7_3:50086243-50086262 | None:intergenic | 35.0% | |
TGGAGAAAAAACTTGCCTTT+GGG | + | chr7_3:50086406-50086425 | None:intergenic | 35.0% | |
TGATGTTGAGAATTTGAACC+TGG | + | chr7_3:50086426-50086445 | None:intergenic | 35.0% | |
AACAAGACATGGAATCTGAA+GGG | + | chr7_3:50086548-50086567 | None:intergenic | 35.0% | |
TAAACTGAACAGGTTCTTGT+GGG | + | chr7_3:50086629-50086648 | None:intergenic | 35.0% | |
TACTCAGGAAATGAGTTATC+TGG | + | chr7_3:50086675-50086694 | None:intergenic | 35.0% | |
TGGAGACCCAAATTCATTAA+TGG | - | chr7_3:50086860-50086879 | Msa1107810:intron | 35.0% | |
GGAGACCCAAATTCATTAAT+GGG | - | chr7_3:50086861-50086880 | Msa1107810:intron | 35.0% | |
GGGTAACCCATTAATGAATT+TGG | + | chr7_3:50086870-50086889 | None:intergenic | 35.0% | |
CTTGAAAATTTGGGCCATTT+GGG | + | chr7_3:50086902-50086921 | None:intergenic | 35.0% | |
!! | AATATACCTTTGGAATCCCT+TGG | + | chr7_3:50086999-50087018 | None:intergenic | 35.0% |
! | AAGGGATTCCAAAGGTATAT+TGG | - | chr7_3:50086998-50087017 | Msa1107810:intron | 35.0% |
! | GTAGTTTGGTTTCAACATGT+GGG | + | chr7_3:50087066-50087085 | None:intergenic | 35.0% |
! | AGTAGTTTGGTTTCAACATG+TGG | + | chr7_3:50087067-50087086 | None:intergenic | 35.0% |
TTGAAACCAAACTACTATCC+TGG | - | chr7_3:50087071-50087090 | Msa1107810:intron | 35.0% | |
TTTAATGGTCAAGGCTGATA+AGG | - | chr7_3:50087149-50087168 | Msa1107810:intron | 35.0% | |
CTAGAATCGTCAAATGAGAA+TGG | - | chr7_3:50087334-50087353 | Msa1107810:five_prime_UTR | 35.0% | |
ATCGAATGTGTTGGAAAACT+TGG | - | chr7_3:50087358-50087377 | Msa1107810:five_prime_UTR | 35.0% | |
GTTGAATTGCAGAACGAAGA+AGG | - | chr7_3:50082851-50082870 | Msa1107810:three_prime_UTR | 40.0% | |
CTTCAATTTGAACCGCTTTG+AGG | + | chr7_3:50082882-50082901 | None:intergenic | 40.0% | |
ACTTTACACAGTCAGTGCAT+AGG | + | chr7_3:50083288-50083307 | None:intergenic | 40.0% | |
GTCAGACATATCAATGATGG+TGG | - | chr7_3:50083335-50083354 | Msa1107810:CDS | 40.0% | |
CCGTGTATAGATTCAGTACA+AGG | - | chr7_3:50083385-50083404 | Msa1107810:CDS | 40.0% | |
AGTAAGAATCCATCCTCTGA+TGG | - | chr7_3:50083649-50083668 | Msa1107810:CDS | 40.0% | |
GTAAGAATCCATCCTCTGAT+GGG | - | chr7_3:50083650-50083669 | Msa1107810:CDS | 40.0% | |
ATCACCTGTTGAGACTGTTA+CGG | - | chr7_3:50083690-50083709 | Msa1107810:CDS | 40.0% | |
CTACTGCTTCTTCTGTTGTT+AGG | - | chr7_3:50083773-50083792 | Msa1107810:CDS | 40.0% | |
TTCTTCTGTTGTTAGGAACG+TGG | - | chr7_3:50083780-50083799 | Msa1107810:CDS | 40.0% | |
TCTTCTGTTGTTAGGAACGT+GGG | - | chr7_3:50083781-50083800 | Msa1107810:CDS | 40.0% | |
TTCCGATTGCGATTTATGGA+AGG | - | chr7_3:50083860-50083879 | Msa1107810:CDS | 40.0% | |
AGCCTTCCATAAATCGCAAT+CGG | + | chr7_3:50083865-50083884 | None:intergenic | 40.0% | |
! | ATTTGGGCTTAGGGTTTGTT+TGG | - | chr7_3:50084002-50084021 | Msa1107810:intron | 40.0% |
ACTTGTGAAACAAGCTCTCT+AGG | - | chr7_3:50084059-50084078 | Msa1107810:intron | 40.0% | |
ATTGCTGGGCAGTAATTTAG+TGG | - | chr7_3:50084301-50084320 | Msa1107810:intron | 40.0% | |
! | GTCCTTGTTTGCCTTTGATT+TGG | - | chr7_3:50084345-50084364 | Msa1107810:intron | 40.0% |
CACCAAATCAAAGGCAAACA+AGG | + | chr7_3:50084350-50084369 | None:intergenic | 40.0% | |
AATGACATACCCGCATCAAA+AGG | - | chr7_3:50084591-50084610 | Msa1107810:intron | 40.0% | |
! | ACTAAACCACCTTTTGATGC+GGG | + | chr7_3:50084603-50084622 | None:intergenic | 40.0% |
CCTATAGTAAGCCAACATCA+AGG | + | chr7_3:50084720-50084739 | None:intergenic | 40.0% | |
!! | CCTTGATGTTGGCTTACTAT+AGG | - | chr7_3:50084717-50084736 | Msa1107810:intron | 40.0% |
CACAATCAAGACAGAAAGCA+TGG | + | chr7_3:50084769-50084788 | None:intergenic | 40.0% | |
CAAAGCAATGAAGACCATTG+AGG | - | chr7_3:50084849-50084868 | Msa1107810:intron | 40.0% | |
AACAAGACGATTACGACACA+CGG | + | chr7_3:50084903-50084922 | None:intergenic | 40.0% | |
CTCAACAAGTGGAAAAGTAG+AGG | + | chr7_3:50085218-50085237 | None:intergenic | 40.0% | |
CATCATTCTAACCTGACATG+TGG | - | chr7_3:50085239-50085258 | Msa1107810:intron | 40.0% | |
ATTCTAACCTGACATGTGGA+GGG | - | chr7_3:50085243-50085262 | Msa1107810:intron | 40.0% | |
CCCACTTGAATAGGTGAAAA+TGG | - | chr7_3:50085299-50085318 | Msa1107810:intron | 40.0% | |
GAAAATGGTGTCCATGCTAT+TGG | - | chr7_3:50085314-50085333 | Msa1107810:intron | 40.0% | |
!! | ATGCATGCTTTAAGGCCAAT+AGG | - | chr7_3:50085945-50085964 | Msa1107810:intron | 40.0% |
CAACCTTAATGTTGACCTTC+AGG | - | chr7_3:50086046-50086065 | Msa1107810:intron | 40.0% | |
ATCCCTGAAGGTCAACATTA+AGG | + | chr7_3:50086052-50086071 | None:intergenic | 40.0% | |
TTTCATCTTCCTTGGTACAC+AGG | - | chr7_3:50086151-50086170 | Msa1107810:intron | 40.0% | |
! | CAGACTATCAAAGTGATGGA+AGG | - | chr7_3:50086198-50086217 | Msa1107810:intron | 40.0% |
AATGAGGAGCTGCACATATT+AGG | + | chr7_3:50086227-50086246 | None:intergenic | 40.0% | |
CGTCTTCTTTATCTGCATTG+GGG | + | chr7_3:50086320-50086339 | None:intergenic | 40.0% | |
CCGTCTTCTTTATCTGCATT+GGG | + | chr7_3:50086321-50086340 | None:intergenic | 40.0% | |
CCCAATGCAGATAAAGAAGA+CGG | - | chr7_3:50086318-50086337 | Msa1107810:CDS | 40.0% | |
TCCGTCTTCTTTATCTGCAT+TGG | + | chr7_3:50086322-50086341 | None:intergenic | 40.0% | |
GAGAAAAAACTTGCCTTTGG+GGG | + | chr7_3:50086404-50086423 | None:intergenic | 40.0% | |
GGAGAAAAAACTTGCCTTTG+GGG | + | chr7_3:50086405-50086424 | None:intergenic | 40.0% | |
CTGGAGAAAAAACTTGCCTT+TGG | + | chr7_3:50086407-50086426 | None:intergenic | 40.0% | |
!!! | CAAAGGCAAGTTTTTTCTCC+AGG | - | chr7_3:50086405-50086424 | Msa1107810:CDS | 40.0% |
!! | CAGCAAAAGCCACCATTTTT+CGG | - | chr7_3:50086510-50086529 | Msa1107810:exon | 40.0% |
TGATGTTGTTGGCCGAAAAA+TGG | + | chr7_3:50086525-50086544 | None:intergenic | 40.0% | |
AATCTGAAGGGTGATGTTGT+TGG | + | chr7_3:50086536-50086555 | None:intergenic | 40.0% | |
GAACAAGACATGGAATCTGA+AGG | + | chr7_3:50086549-50086568 | None:intergenic | 40.0% | |
! | GATTCCATGTCTTGTTCTGT+CGG | - | chr7_3:50086552-50086571 | Msa1107810:five_prime_UTR | 40.0% |
AAACTGAACAGGTTCTTGTG+GGG | + | chr7_3:50086628-50086647 | None:intergenic | 40.0% | |
GTAAACTGAACAGGTTCTTG+TGG | + | chr7_3:50086630-50086649 | None:intergenic | 40.0% | |
CAGCATAAAATGGTTGAGCT+CGG | + | chr7_3:50086797-50086816 | None:intergenic | 40.0% | |
TCATAGGGAGCAGCATAAAA+TGG | + | chr7_3:50086807-50086826 | None:intergenic | 40.0% | |
TCCTGCCTAGACATATCATA+GGG | + | chr7_3:50086822-50086841 | None:intergenic | 40.0% | |
!! | TCATTAATGGGTTACCCACA+AGG | - | chr7_3:50086873-50086892 | Msa1107810:intron | 40.0% |
!! | CATTAATGGGTTACCCACAA+GGG | - | chr7_3:50086874-50086893 | Msa1107810:intron | 40.0% |
!! | ATTAATGGGTTACCCACAAG+GGG | - | chr7_3:50086875-50086894 | Msa1107810:intron | 40.0% |
CCTTGAAAATTTGGGCCATT+TGG | + | chr7_3:50086903-50086922 | None:intergenic | 40.0% | |
! | CCAAATGGCCCAAATTTTCA+AGG | - | chr7_3:50086900-50086919 | Msa1107810:intron | 40.0% |
! | GTTCCTTTTGAACAAGCACA+AGG | - | chr7_3:50086954-50086973 | Msa1107810:intron | 40.0% |
TGATCACCAGGATAGTAGTT+TGG | + | chr7_3:50087080-50087099 | None:intergenic | 40.0% | |
AACTACTATCCTGGTGATCA+TGG | - | chr7_3:50087080-50087099 | Msa1107810:intron | 40.0% | |
ATGATGGTCAAGGTTATGGT+TGG | - | chr7_3:50087105-50087124 | Msa1107810:intron | 40.0% | |
! | GATAGTCGTGACAGCTTTAA+TGG | - | chr7_3:50087134-50087153 | Msa1107810:intron | 40.0% |
GAGAATGGAATCGAATGTGT+TGG | - | chr7_3:50087349-50087368 | Msa1107810:five_prime_UTR | 40.0% | |
AAGAAGGAAGAGCCTCAAAG+CGG | - | chr7_3:50082867-50082886 | Msa1107810:three_prime_UTR | 45.0% | |
! | AAGGAGGAGCGTGAGTAATT+TGG | - | chr7_3:50083541-50083560 | Msa1107810:CDS | 45.0% |
GAAGATCAGCAAGGACCAAA+TGG | + | chr7_3:50083729-50083748 | None:intergenic | 45.0% | |
TTGCAACAGGAAGATCAGCA+AGG | + | chr7_3:50083738-50083757 | None:intergenic | 45.0% | |
TGCTGATCTTCCTGTTGCAA+AGG | - | chr7_3:50083738-50083757 | Msa1107810:CDS | 45.0% | |
GCTGATCTTCCTGTTGCAAA+GGG | - | chr7_3:50083739-50083758 | Msa1107810:CDS | 45.0% | |
! | CTTCCTGTTGCAAAGGGTAT+TGG | - | chr7_3:50083745-50083764 | Msa1107810:CDS | 45.0% |
GTACCAATACCCTTTGCAAC+AGG | + | chr7_3:50083751-50083770 | None:intergenic | 45.0% | |
GATTGCGATTTATGGAAGGC+TGG | - | chr7_3:50083864-50083883 | Msa1107810:CDS | 45.0% | |
CATTTAGGCTTCTGCTTGCT+AGG | - | chr7_3:50083919-50083938 | Msa1107810:CDS | 45.0% | |
AAGCATGCTAGCTGAATTGC+TGG | - | chr7_3:50084286-50084305 | Msa1107810:intron | 45.0% | |
AGCATGCTAGCTGAATTGCT+GGG | - | chr7_3:50084287-50084306 | Msa1107810:intron | 45.0% | |
! | GTTGGCTTACTATAGGGTTG+TGG | - | chr7_3:50084724-50084743 | Msa1107810:intron | 45.0% |
! | GACAGAAAGCATGGTCACAA+GGG | + | chr7_3:50084760-50084779 | None:intergenic | 45.0% |
! | AGACAGAAAGCATGGTCACA+AGG | + | chr7_3:50084761-50084780 | None:intergenic | 45.0% |
GATTACGACACACGGAATAG+TGG | + | chr7_3:50084895-50084914 | None:intergenic | 45.0% | |
CATTCTAACCTGACATGTGG+AGG | - | chr7_3:50085242-50085261 | Msa1107810:intron | 45.0% | |
CTACACACATGCCAATAGCA+TGG | + | chr7_3:50085328-50085347 | None:intergenic | 45.0% | |
TGAGCCTATGTGCAAGTGTA+AGG | - | chr7_3:50085912-50085931 | Msa1107810:intron | 45.0% | |
ACAGCCTTACACTTGCACAT+AGG | + | chr7_3:50085919-50085938 | None:intergenic | 45.0% | |
CTTGAAGGAGCTTGATCTCT+TGG | + | chr7_3:50086480-50086499 | None:intergenic | 45.0% | |
CAAGAGATCAAGCTCCTTCA+AGG | - | chr7_3:50086478-50086497 | Msa1107810:CDS | 45.0% | |
TGTTGTTGGCCGAAAAATGG+TGG | + | chr7_3:50086522-50086541 | None:intergenic | 45.0% | |
AACTGAACAGGTTCTTGTGG+GGG | + | chr7_3:50086627-50086646 | None:intergenic | 45.0% | |
AACCTGTTCAGTTTACCGAC+AGG | - | chr7_3:50086634-50086653 | Msa1107810:intron | 45.0% | |
ACCAATTGATTGCTGCCTGT+CGG | + | chr7_3:50086652-50086671 | None:intergenic | 45.0% | |
GATAACCAAATGGCACAGGT+GGG | + | chr7_3:50086758-50086777 | None:intergenic | 45.0% | |
CTGCTCCCTATGATATGTCT+AGG | - | chr7_3:50086814-50086833 | Msa1107810:intron | 45.0% | |
TCCCTATGATATGTCTAGGC+AGG | - | chr7_3:50086818-50086837 | Msa1107810:intron | 45.0% | |
GTCCTGCCTAGACATATCAT+AGG | + | chr7_3:50086823-50086842 | None:intergenic | 45.0% | |
CAGGACTCGTCTTCTGATAT+TGG | - | chr7_3:50086837-50086856 | Msa1107810:intron | 45.0% | |
GACTCGTCTTCTGATATTGG+TGG | - | chr7_3:50086840-50086859 | Msa1107810:intron | 45.0% | |
GCACCTTGTGCTTGTTCAAA+AGG | + | chr7_3:50086960-50086979 | None:intergenic | 45.0% | |
TTTGAACAAGCACAAGGTGC+TGG | - | chr7_3:50086960-50086979 | Msa1107810:intron | 45.0% | |
! | CTGTGGTGCCAATATACCTT+TGG | + | chr7_3:50087009-50087028 | None:intergenic | 45.0% |
! | TTTGGTTTCAACATGTGGGC+TGG | + | chr7_3:50087062-50087081 | None:intergenic | 45.0% |
GATCATGGACATGATGGTCA+AGG | - | chr7_3:50087095-50087114 | Msa1107810:intron | 45.0% | |
GGACATGATGGTCAAGGTTA+TGG | - | chr7_3:50087101-50087120 | Msa1107810:intron | 45.0% | |
! | CGTGACAGCTTTAATGGTCA+AGG | - | chr7_3:50087140-50087159 | Msa1107810:intron | 45.0% |
! | GAATCCATCCTCTGATGGGT+CGG | - | chr7_3:50083654-50083673 | Msa1107810:CDS | 50.0% |
GCAACCGTAACAGTCTCAAC+AGG | + | chr7_3:50083697-50083716 | None:intergenic | 50.0% | |
CAGCAAGGACCAAATGGTCA+GGG | + | chr7_3:50083723-50083742 | None:intergenic | 50.0% | |
TCAGCAAGGACCAAATGGTC+AGG | + | chr7_3:50083724-50083743 | None:intergenic | 50.0% | |
AATGAACTCGCTCACCAAGC+TGG | + | chr7_3:50083822-50083841 | None:intergenic | 50.0% | |
! | TAGGCTTCTGCTTGCTAGGA+TGG | - | chr7_3:50083923-50083942 | Msa1107810:CDS | 50.0% |
GACATACCCGCATCAAAAGG+TGG | - | chr7_3:50084594-50084613 | Msa1107810:intron | 50.0% | |
TCAGTTAGGCTGAGTCAGCT+AGG | + | chr7_3:50085692-50085711 | None:intergenic | 50.0% | |
TCCTTGGTACACAGGTGTGA+AGG | - | chr7_3:50086159-50086178 | Msa1107810:intron | 50.0% | |
TCCTTCACACCTGTGTACCA+AGG | + | chr7_3:50086163-50086182 | None:intergenic | 50.0% | |
GAAGATCGGCGTGGAATTCA+TGG | + | chr7_3:50086293-50086312 | None:intergenic | 50.0% | |
TGCATTGGGGCGAAGAAGAT+CGG | + | chr7_3:50086307-50086326 | None:intergenic | 50.0% | |
ATCTGGAAGACAGAACCCGT+CGG | - | chr7_3:50086448-50086467 | Msa1107810:CDS | 50.0% | |
GAAGGAGCTTGATCTCTTGG+TGG | + | chr7_3:50086477-50086496 | None:intergenic | 50.0% | |
! | TCCATGTCTTGTTCTGTCGG+AGG | - | chr7_3:50086555-50086574 | Msa1107810:five_prime_UTR | 50.0% |
ACCTCCGACAGAACAAGACA+TGG | + | chr7_3:50086559-50086578 | None:intergenic | 50.0% | |
ACTGAACAGGTTCTTGTGGG+GGG | + | chr7_3:50086626-50086645 | None:intergenic | 50.0% | |
TGCCTGTCGGTAAACTGAAC+AGG | + | chr7_3:50086639-50086658 | None:intergenic | 50.0% | |
ACCGACAGGCAGCAATCAAT+TGG | - | chr7_3:50086648-50086667 | Msa1107810:intron | 50.0% | |
GGGTGCATTGTTGGATACTC+AGG | + | chr7_3:50086690-50086709 | None:intergenic | 50.0% | |
!! | GAACATTGGTGGGTTGTGCA+GGG | + | chr7_3:50086710-50086729 | None:intergenic | 50.0% |
! | TCAGCATTGGGTTTGGGTGT+GGG | + | chr7_3:50086734-50086753 | None:intergenic | 50.0% |
! | TTCAGCATTGGGTTTGGGTG+TGG | + | chr7_3:50086735-50086754 | None:intergenic | 50.0% |
! | GTGGGTTCAGCATTGGGTTT+GGG | + | chr7_3:50086740-50086759 | None:intergenic | 50.0% |
GGATAACCAAATGGCACAGG+TGG | + | chr7_3:50086759-50086778 | None:intergenic | 50.0% | |
GGGAAAGGGGGATAACCAAA+TGG | + | chr7_3:50086768-50086787 | None:intergenic | 50.0% | |
AATGGTTGAGCTCGGTCTTG+CGG | + | chr7_3:50086789-50086808 | None:intergenic | 50.0% | |
AAGGAAATTATCCCCAGCCC+TGG | - | chr7_3:50086919-50086938 | Msa1107810:intron | 50.0% | |
!! | ACAAGCACAAGGTGCTGGTA+TGG | - | chr7_3:50086965-50086984 | Msa1107810:intron | 50.0% |
TGGTATGGCTGTGGATCCAA+GGG | - | chr7_3:50086980-50086999 | Msa1107810:intron | 50.0% | |
GTGGATCCAAGGGATTCCAA+AGG | - | chr7_3:50086990-50087009 | Msa1107810:intron | 50.0% | |
TATATTGGCACCACAGCCCA+TGG | - | chr7_3:50087013-50087032 | Msa1107810:intron | 50.0% | |
CCATCATGTCCATGATCACC+AGG | + | chr7_3:50087092-50087111 | None:intergenic | 50.0% | |
CCTGGTGATCATGGACATGA+TGG | - | chr7_3:50087089-50087108 | Msa1107810:intron | 50.0% | |
AAGGACCAAATGGTCAGGGC+AGG | + | chr7_3:50083719-50083738 | None:intergenic | 55.0% | |
CTAACCTGACATGTGGAGGG+AGG | - | chr7_3:50085246-50085265 | Msa1107810:intron | 55.0% | |
AACACCTCCCTCCACATGTC+AGG | + | chr7_3:50085253-50085272 | None:intergenic | 55.0% | |
! | ATCTCTTGGTGGTTGCCGAC+GGG | + | chr7_3:50086466-50086485 | None:intergenic | 55.0% |
! | GATCTCTTGGTGGTTGCCGA+CGG | + | chr7_3:50086467-50086486 | None:intergenic | 55.0% |
!! | TGCTGCATTGCTGGCCTTGA+AGG | + | chr7_3:50086495-50086514 | None:intergenic | 55.0% |
! | GGTGGCTTTTGCTGCATTGC+TGG | + | chr7_3:50086504-50086523 | None:intergenic | 55.0% |
! | TTCTGTCGGAGGTATGCAGC+AGG | - | chr7_3:50086566-50086585 | Msa1107810:five_prime_UTR | 55.0% |
! | TCTGTCGGAGGTATGCAGCA+GGG | - | chr7_3:50086567-50086586 | Msa1107810:five_prime_UTR | 55.0% |
GGTTGTGCAGGGTGCATTGT+TGG | + | chr7_3:50086699-50086718 | None:intergenic | 55.0% | |
!! | GGAACATTGGTGGGTTGTGC+AGG | + | chr7_3:50086711-50086730 | None:intergenic | 55.0% |
GTTTGGGTGTGGGGGAACAT+TGG | + | chr7_3:50086724-50086743 | None:intergenic | 55.0% | |
! | AGCATTGGGTTTGGGTGTGG+GGG | + | chr7_3:50086732-50086751 | None:intergenic | 55.0% |
! | CAGCATTGGGTTTGGGTGTG+GGG | + | chr7_3:50086733-50086752 | None:intergenic | 55.0% |
! | GGTGGGTTCAGCATTGGGTT+TGG | + | chr7_3:50086741-50086760 | None:intergenic | 55.0% |
! | GCACAGGTGGGTTCAGCATT+GGG | + | chr7_3:50086746-50086765 | None:intergenic | 55.0% |
! | CTGAACCCACCTGTGCCATT+TGG | - | chr7_3:50086750-50086769 | Msa1107810:intron | 55.0% |
GGGGGATAACCAAATGGCAC+AGG | + | chr7_3:50086762-50086781 | None:intergenic | 55.0% | |
ATGGTTGAGCTCGGTCTTGC+GGG | + | chr7_3:50086788-50086807 | None:intergenic | 55.0% | |
TACCCACAAGGGGTCCCAAA+TGG | - | chr7_3:50086885-50086904 | Msa1107810:intron | 55.0% | |
GGAACACCTGCTGCATTCCA+GGG | + | chr7_3:50086939-50086958 | None:intergenic | 55.0% | |
AGGAACACCTGCTGCATTCC+AGG | + | chr7_3:50086940-50086959 | None:intergenic | 55.0% | |
!! | ACAAGGTGCTGGTATGGCTG+TGG | - | chr7_3:50086971-50086990 | Msa1107810:intron | 55.0% |
CTGGTATGGCTGTGGATCCA+AGG | - | chr7_3:50086979-50086998 | Msa1107810:intron | 55.0% | |
!! | TTCAACATGTGGGCTGGAGG+TGG | + | chr7_3:50087056-50087075 | None:intergenic | 55.0% |
!! | GGTTTCAACATGTGGGCTGG+AGG | + | chr7_3:50087059-50087078 | None:intergenic | 55.0% |
GGTTGCCTGCCCTGACCATT+TGG | - | chr7_3:50083711-50083730 | Msa1107810:CDS | 60.0% | |
! | GCAGTGGAGTCTGAGGCTGT+AGG | + | chr7_3:50086375-50086394 | None:intergenic | 60.0% |
GGGTGTGGGGGAACATTGGT+GGG | + | chr7_3:50086720-50086739 | None:intergenic | 60.0% | |
TGGGTGTGGGGGAACATTGG+TGG | + | chr7_3:50086721-50086740 | None:intergenic | 60.0% | |
! | GGCACAGGTGGGTTCAGCAT+TGG | + | chr7_3:50086747-50086766 | None:intergenic | 60.0% |
AGCTCGGTCTTGCGGGAAAG+GGG | + | chr7_3:50086781-50086800 | None:intergenic | 60.0% | |
GAGCTCGGTCTTGCGGGAAA+GGG | + | chr7_3:50086782-50086801 | None:intergenic | 60.0% | |
TGAGCTCGGTCTTGCGGGAA+AGG | + | chr7_3:50086783-50086802 | None:intergenic | 60.0% | |
! | GGCCATTTGGGACCCCTTGT+GGG | + | chr7_3:50086890-50086909 | None:intergenic | 60.0% |
ACCTGCTGCATTCCAGGGCT+GGG | + | chr7_3:50086934-50086953 | None:intergenic | 60.0% | |
!! | AACATGTGGGCTGGAGGTGG+TGG | + | chr7_3:50087053-50087072 | None:intergenic | 60.0% |
CCTGCCGACCCATCAGAGGA+TGG | + | chr7_3:50083661-50083680 | None:intergenic | 65.0% | |
! | CCATCCTCTGATGGGTCGGC+AGG | - | chr7_3:50083658-50083677 | Msa1107810:CDS | 65.0% |
TCGCTCACCAAGCTGGCGAC+GGG | + | chr7_3:50083815-50083834 | None:intergenic | 65.0% | |
CTCGCTCACCAAGCTGGCGA+CGG | + | chr7_3:50083816-50083835 | None:intergenic | 65.0% | |
TGGGGCGAAGAAGATCGGCG+TGG | + | chr7_3:50086302-50086321 | None:intergenic | 65.0% | |
GCCTCAGACTCCACTGCTCG+AGG | - | chr7_3:50086378-50086397 | Msa1107810:CDS | 65.0% | |
GCCTCGAGCAGTGGAGTCTG+AGG | + | chr7_3:50086382-50086401 | None:intergenic | 65.0% | |
GCTCGGTCTTGCGGGAAAGG+GGG | + | chr7_3:50086780-50086799 | None:intergenic | 65.0% | |
! | GGGCCATTTGGGACCCCTTG+TGG | + | chr7_3:50086891-50086910 | None:intergenic | 65.0% |
CCTGCTGCATTCCAGGGCTG+GGG | + | chr7_3:50086933-50086952 | None:intergenic | 65.0% | |
CACCTGCTGCATTCCAGGGC+TGG | + | chr7_3:50086935-50086954 | None:intergenic | 65.0% | |
!! | GGTGGTGGTGGGAGAGCCAT+GGG | + | chr7_3:50087032-50087051 | None:intergenic | 65.0% |
!! | TGGTGGTGGTGGGAGAGCCA+TGG | + | chr7_3:50087033-50087052 | None:intergenic | 65.0% |
!! | CTGGAGGTGGTGGTGGTGGT+GGG | + | chr7_3:50087043-50087062 | None:intergenic | 65.0% |
!! | ATGTGGGCTGGAGGTGGTGG+TGG | + | chr7_3:50087050-50087069 | None:intergenic | 65.0% |
CACGCCTGCCGACCCATCAG+AGG | + | chr7_3:50083665-50083684 | None:intergenic | 70.0% | |
CGCAGATCCCGTCGCCAGCT+TGG | - | chr7_3:50083805-50083824 | Msa1107810:CDS | 70.0% | |
! | CCTTTGGGGGCCTCGAGCAG+TGG | + | chr7_3:50086391-50086410 | None:intergenic | 70.0% |
CCACTGCTCGAGGCCCCCAA+AGG | - | chr7_3:50086388-50086407 | Msa1107810:CDS | 70.0% | |
CCCCAGCCCTGGAATGCAGC+AGG | - | chr7_3:50086930-50086949 | Msa1107810:intron | 70.0% | |
! | GGTGGGAGAGCCATGGGCTG+TGG | + | chr7_3:50087026-50087045 | None:intergenic | 70.0% |
!! | GCTGGAGGTGGTGGTGGTGG+TGG | + | chr7_3:50087044-50087063 | None:intergenic | 70.0% |
!! | TGGGCTGGAGGTGGTGGTGG+TGG | + | chr7_3:50087047-50087066 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 50082730 | 50087417 | 50082730 | ID=Msa1107810;Name=Msa1107810 |
chr7_3 | mRNA | 50082730 | 50087417 | 50082730 | ID=Msa1107810-mRNA-1;Parent=Msa1107810;Name=Msa1107810-mRNA-1;_AED=0.11;_eAED=0.11;_QI=305|1|1|1|0.66|0.5|4|251|435 |
chr7_3 | exon | 50082730 | 50083974 | 50082730 | ID=Msa1107810-mRNA-1:exon:10231;Parent=Msa1107810-mRNA-1 |
chr7_3 | exon | 50085334 | 50085392 | 50085334 | ID=Msa1107810-mRNA-1:exon:10230;Parent=Msa1107810-mRNA-1 |
chr7_3 | exon | 50086262 | 50086603 | 50086262 | ID=Msa1107810-mRNA-1:exon:10229;Parent=Msa1107810-mRNA-1 |
chr7_3 | exon | 50087200 | 50087417 | 50087200 | ID=Msa1107810-mRNA-1:exon:10228;Parent=Msa1107810-mRNA-1 |
chr7_3 | five_prime_UTR | 50087200 | 50087417 | 50087200 | ID=Msa1107810-mRNA-1:five_prime_utr;Parent=Msa1107810-mRNA-1 |
chr7_3 | five_prime_UTR | 50086517 | 50086603 | 50086517 | ID=Msa1107810-mRNA-1:five_prime_utr;Parent=Msa1107810-mRNA-1 |
chr7_3 | CDS | 50086262 | 50086516 | 50086262 | ID=Msa1107810-mRNA-1:cds;Parent=Msa1107810-mRNA-1 |
chr7_3 | CDS | 50085334 | 50085392 | 50085334 | ID=Msa1107810-mRNA-1:cds;Parent=Msa1107810-mRNA-1 |
chr7_3 | CDS | 50082981 | 50083974 | 50082981 | ID=Msa1107810-mRNA-1:cds;Parent=Msa1107810-mRNA-1 |
chr7_3 | three_prime_UTR | 50082730 | 50082980 | 50082730 | ID=Msa1107810-mRNA-1:three_prime_utr;Parent=Msa1107810-mRNA-1 |
Gene Sequence |
Protein sequence |