AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1107810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1107810 MtrunA17_Chr7g0235691 96.330 436 13 2 1 435 1 434 0.0 851
Msa1107810 MtrunA17_Chr7g0241531 95.862 435 17 1 1 435 1 434 0.0 850
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1107810 AT5G01160.2 45.393 445 141 16 1 431 1 357 9.96e-105 315
Msa1107810 AT5G01160.1 45.393 445 141 16 1 431 1 357 9.96e-105 315

Find 170 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATAATTTCCTTGAAAATT+TGG 0.121213 7_3:+50083216 None:intergenic
GGGTAACCCATTAATGAATT+TGG 0.140474 7_3:+50083258 None:intergenic
GCTGGAGGTGGTGGTGGTGG+TGG 0.195575 7_3:+50083084 None:intergenic
CAGCATTGGGTTTGGGTGTG+GGG 0.211301 7_3:+50083395 None:intergenic
CTGCAATTTCTATTACATTT+TGG 0.212596 7_3:-50082906 Msa1107810:three_prime_UTR
CCTTGAAAATTTGGGCCATT+TGG 0.235231 7_3:+50083225 None:intergenic
CTTTGATAGTCTGAATCTTC+TGG 0.237309 7_3:+50083937 None:intergenic
TTCAGCATTGGGTTTGGGTG+TGG 0.242330 7_3:+50083393 None:intergenic
TGCTGCATTGCTGGCCTTGA+AGG 0.252713 7_3:+50083633 None:intergenic
GGAACATTGGTGGGTTGTGC+AGG 0.262651 7_3:+50083417 None:intergenic
CCGTCTTCTTTATCTGCATT+GGG 0.270406 7_3:+50083807 None:intergenic
TGGAGACCCAAATTCATTAA+TGG 0.271048 7_3:-50083265 Msa1107810:CDS
ACCTCTTTGGTAAACAATAA+AGG 0.272668 7_3:+50082844 None:intergenic
GTGGGTTCAGCATTGGGTTT+GGG 0.273827 7_3:+50083388 None:intergenic
GATAGTCGTGACAGCTTTAA+TGG 0.284126 7_3:-50082991 Msa1107810:CDS
CTTGAAAATTTGGGCCATTT+GGG 0.284682 7_3:+50083226 None:intergenic
ATCAATGTAATACTTCAAAT+TGG 0.285550 7_3:+50086550 None:intergenic
AGGAACACCTGCTGCATTCC+AGG 0.286287 7_3:+50083188 None:intergenic
TCAGCATTGGGTTTGGGTGT+GGG 0.290806 7_3:+50083394 None:intergenic
GGTGGGTTCAGCATTGGGTT+TGG 0.296312 7_3:+50083387 None:intergenic
AAGGAGGAGCGTGAGTAATT+TGG 0.297567 7_3:-50086584 Msa1107810:five_prime_UTR
TGGGCTGGAGGTGGTGGTGG+TGG 0.299780 7_3:+50083081 None:intergenic
TCCGTCTTCTTTATCTGCAT+TGG 0.301508 7_3:+50083806 None:intergenic
TTGAAGTATTACATTGATAA+AGG 0.306296 7_3:-50086545 Msa1107810:five_prime_UTR
CTACTGCTTCTTCTGTTGTT+AGG 0.324947 7_3:-50086352 Msa1107810:CDS
AATGAGGAGCTGCACATATT+AGG 0.326464 7_3:+50083901 None:intergenic
ATGGTTGAGCTCGGTCTTGC+GGG 0.329657 7_3:+50083340 None:intergenic
GAAGATCGGCGTGGAATTCA+TGG 0.334875 7_3:+50083835 None:intergenic
GATAATTTCCTTGAAAATTT+GGG 0.339902 7_3:+50083217 None:intergenic
ACCTGCTGCATTCCAGGGCT+GGG 0.348172 7_3:+50083194 None:intergenic
CACCTGCTGCATTCCAGGGC+TGG 0.351191 7_3:+50083193 None:intergenic
ATGTGGGCTGGAGGTGGTGG+TGG 0.352143 7_3:+50083078 None:intergenic
GGTAACCCATTAATGAATTT+GGG 0.353294 7_3:+50083259 None:intergenic
GGTTGCCTGCCCTGACCATT+TGG 0.364740 7_3:-50086414 Msa1107810:CDS
GGTTGTGCAGGGTGCATTGT+TGG 0.367244 7_3:+50083429 None:intergenic
TGAGCTCGGTCTTGCGGGAA+AGG 0.367370 7_3:+50083345 None:intergenic
CTTGAAGGAGCTTGATCTCT+TGG 0.368073 7_3:+50083648 None:intergenic
AAGGGATTCCAAAGGTATAT+TGG 0.369838 7_3:-50083127 Msa1107810:CDS
GGCCATTTGGGACCCCTTGT+GGG 0.369999 7_3:+50083238 None:intergenic
CTTCAATTTGAACCGCTTTG+AGG 0.371089 7_3:+50087246 None:intergenic
GGAGACCCAAATTCATTAAT+GGG 0.371180 7_3:-50083264 Msa1107810:CDS
CTTCCTGTTGCAAAGGGTAT+TGG 0.371327 7_3:-50086380 Msa1107810:CDS
GGTGGTGGTGGGAGAGCCAT+GGG 0.371510 7_3:+50083096 None:intergenic
TGATCACCAGGATAGTAGTT+TGG 0.374252 7_3:+50083048 None:intergenic
GCACAGGTGGGTTCAGCATT+GGG 0.376338 7_3:+50083382 None:intergenic
TCATAGGGAGCAGCATAAAA+TGG 0.377461 7_3:+50083321 None:intergenic
TGGTGGTGGTGGGAGAGCCA+TGG 0.377827 7_3:+50083095 None:intergenic
TACTCAGGAAATGAGTTATC+TGG 0.380101 7_3:+50083453 None:intergenic
TTGGAAAACTTGGAATAATA+TGG 0.389238 7_3:-50082757 Msa1107810:three_prime_UTR
GCACCTTGTGCTTGTTCAAA+AGG 0.397515 7_3:+50083168 None:intergenic
GGTGGGAGAGCCATGGGCTG+TGG 0.398629 7_3:+50083102 None:intergenic
CAAGAGATCAAGCTCCTTCA+AGG 0.403818 7_3:-50083647 Msa1107810:CDS
AACATGTGGGCTGGAGGTGG+TGG 0.407874 7_3:+50083075 None:intergenic
CAGGACTCGTCTTCTGATAT+TGG 0.415458 7_3:-50083288 Msa1107810:CDS
AACTACTATCCTGGTGATCA+TGG 0.417309 7_3:-50083045 Msa1107810:CDS
GAGCTCGGTCTTGCGGGAAA+GGG 0.418923 7_3:+50083346 None:intergenic
GATCTCTTGGTGGTTGCCGA+CGG 0.430969 7_3:+50083661 None:intergenic
ATTGAAATATGCTTCAGATT+CGG 0.433005 7_3:-50086502 Msa1107810:exon
ACCGACAGGCAGCAATCAAT+TGG 0.433748 7_3:-50083477 Msa1107810:CDS
AGAGAAATGACATGAATGAT+AGG 0.433981 7_3:+50082950 None:intergenic
TTCAACATGTGGGCTGGAGG+TGG 0.434246 7_3:+50083072 None:intergenic
GGCACAGGTGGGTTCAGCAT+TGG 0.438653 7_3:+50083381 None:intergenic
ATCTCTTGGTGGTTGCCGAC+GGG 0.438811 7_3:+50083662 None:intergenic
ATCGAATGTGTTGGAAAACT+TGG 0.439617 7_3:-50082767 Msa1107810:three_prime_UTR
CTGGTATGGCTGTGGATCCA+AGG 0.444179 7_3:-50083146 Msa1107810:CDS
TGCTGATCTTCCTGTTGCAA+AGG 0.449994 7_3:-50086387 Msa1107810:CDS
TCAGCAAGGACCAAATGGTC+AGG 0.454307 7_3:+50086404 None:intergenic
TAAACTGAACAGGTTCTTGT+GGG 0.455113 7_3:+50083499 None:intergenic
GTACCAATACCCTTTGCAAC+AGG 0.456253 7_3:+50086377 None:intergenic
GGGCCATTTGGGACCCCTTG+TGG 0.457407 7_3:+50083237 None:intergenic
TGCCTGTCGGTAAACTGAAC+AGG 0.458587 7_3:+50083489 None:intergenic
TCCTTTATTGTTTACCAAAG+AGG 0.458712 7_3:-50082845 Msa1107810:three_prime_UTR
GCTGATCTTCCTGTTGCAAA+GGG 0.461785 7_3:-50086386 Msa1107810:CDS
GGACATGATGGTCAAGGTTA+TGG 0.463050 7_3:-50083024 Msa1107810:CDS
TTTAATGGTCAAGGCTGATA+AGG 0.463161 7_3:-50082976 Msa1107810:exon
TTTGGTTTCAACATGTGGGC+TGG 0.470551 7_3:+50083066 None:intergenic
AGCTCGGTCTTGCGGGAAAG+GGG 0.473849 7_3:+50083347 None:intergenic
CTGAACCCACCTGTGCCATT+TGG 0.475075 7_3:-50083375 Msa1107810:CDS
GAACATTGGTGGGTTGTGCA+GGG 0.476226 7_3:+50083418 None:intergenic
AAATTCTCAACATCATGATC+TGG 0.477320 7_3:-50083694 Msa1107810:CDS
AATATACCTTTGGAATCCCT+TGG 0.478258 7_3:+50083129 None:intergenic
CTAGAATCGTCAAATGAGAA+TGG 0.478826 7_3:-50082791 Msa1107810:three_prime_UTR
GTTGAATTGCAGAACGAAGA+AGG 0.479730 7_3:-50087274 Msa1107810:five_prime_UTR
GTCCTGCCTAGACATATCAT+AGG 0.482722 7_3:+50083305 None:intergenic
AGCATTGGGTTTGGGTGTGG+GGG 0.486521 7_3:+50083396 None:intergenic
CCATCCTCTGATGGGTCGGC+AGG 0.488214 7_3:-50086467 Msa1107810:CDS
GAAGGAGCTTGATCTCTTGG+TGG 0.489730 7_3:+50083651 None:intergenic
CTCGCTCACCAAGCTGGCGA+CGG 0.489987 7_3:+50086312 None:intergenic
TACCCACAAGGGGTCCCAAA+TGG 0.492495 7_3:-50083240 Msa1107810:CDS
TTGAAACCAAACTACTATCC+TGG 0.500802 7_3:-50083054 Msa1107810:CDS
GAAGATCAGCAAGGACCAAA+TGG 0.503230 7_3:+50086399 None:intergenic
AGTAAGAATCCATCCTCTGA+TGG 0.503238 7_3:-50086476 Msa1107810:CDS
TGCATTGGGGCGAAGAAGAT+CGG 0.503512 7_3:+50083821 None:intergenic
CTGTGGTGCCAATATACCTT+TGG 0.504496 7_3:+50083119 None:intergenic
TCGCTCACCAAGCTGGCGAC+GGG 0.507248 7_3:+50086313 None:intergenic
TCTTCTGTTGTTAGGAACGT+GGG 0.507729 7_3:-50086344 Msa1107810:CDS
TTTGAACAAGCACAAGGTGC+TGG 0.508460 7_3:-50083165 Msa1107810:CDS
CCCCAGCCCTGGAATGCAGC+AGG 0.510080 7_3:-50083195 Msa1107810:CDS
AAGGAAATTATCCCCAGCCC+TGG 0.511237 7_3:-50083206 Msa1107810:CDS
GATTCCATGTCTTGTTCTGT+CGG 0.512644 7_3:-50083573 Msa1107810:CDS
CTGCTCCCTATGATATGTCT+AGG 0.513736 7_3:-50083311 Msa1107810:CDS
AGCCTTCCATAAATCGCAAT+CGG 0.515681 7_3:+50086263 None:intergenic
GGGTGCATTGTTGGATACTC+AGG 0.520311 7_3:+50083438 None:intergenic
CCATCATGTCCATGATCACC+AGG 0.520401 7_3:+50083036 None:intergenic
AGTAGTTTGGTTTCAACATG+TGG 0.520682 7_3:+50083061 None:intergenic
GCAACCGTAACAGTCTCAAC+AGG 0.527112 7_3:+50086431 None:intergenic
GGTTTCAACATGTGGGCTGG+AGG 0.527232 7_3:+50083069 None:intergenic
TCCCTATGATATGTCTAGGC+AGG 0.530889 7_3:-50083307 Msa1107810:CDS
GCCTCGAGCAGTGGAGTCTG+AGG 0.531560 7_3:+50083746 None:intergenic
TTCTTCTGTTGTTAGGAACG+TGG 0.532955 7_3:-50086345 Msa1107810:CDS
AAGGACCAAATGGTCAGGGC+AGG 0.533168 7_3:+50086409 None:intergenic
GGATAACCAAATGGCACAGG+TGG 0.535200 7_3:+50083369 None:intergenic
AATGGTTGAGCTCGGTCTTG+CGG 0.535415 7_3:+50083339 None:intergenic
GACTCGTCTTCTGATATTGG+TGG 0.536749 7_3:-50083285 Msa1107810:CDS
AATGAACTCGCTCACCAAGC+TGG 0.540474 7_3:+50086306 None:intergenic
GATTGCGATTTATGGAAGGC+TGG 0.540765 7_3:-50086261 Msa1107810:intron
GGAACACCTGCTGCATTCCA+GGG 0.546459 7_3:+50083189 None:intergenic
TTCCGATTGCGATTTATGGA+AGG 0.551908 7_3:-50086265 Msa1107810:CDS
TGATGTTGAGAATTTGAACC+TGG 0.554957 7_3:+50083702 None:intergenic
CGTGACAGCTTTAATGGTCA+AGG 0.563604 7_3:-50082985 Msa1107810:CDS
ATCACCTGTTGAGACTGTTA+CGG 0.563605 7_3:-50086435 Msa1107810:CDS
TCATTAATGGGTTACCCACA+AGG 0.563876 7_3:-50083252 Msa1107810:CDS
GAGAATGGAATCGAATGTGT+TGG 0.564119 7_3:-50082776 Msa1107810:three_prime_UTR
GATTCAGACTATCAAAGTGA+TGG 0.568943 7_3:-50083931 Msa1107810:CDS
AGACAGAAAGCATGGTCACA+AGG 0.569461 7_3:+50085367 None:intergenic
GTAAGAATCCATCCTCTGAT+GGG 0.571956 7_3:-50086475 Msa1107810:CDS
ACAAGCACAAGGTGCTGGTA+TGG 0.572221 7_3:-50083160 Msa1107810:CDS
CGTCTTCTTTATCTGCATTG+GGG 0.576168 7_3:+50083808 None:intergenic
AACTGAACAGGTTCTTGTGG+GGG 0.577843 7_3:+50083501 None:intergenic
AACCTGTTCAGTTTACCGAC+AGG 0.578186 7_3:-50083491 Msa1107810:CDS
CCTGCTGCATTCCAGGGCTG+GGG 0.580828 7_3:+50083195 None:intergenic
GCCTCAGACTCCACTGCTCG+AGG 0.582998 7_3:-50083747 Msa1107810:CDS
CAGCATAAAATGGTTGAGCT+CGG 0.584595 7_3:+50083331 None:intergenic
CATTAATGGGTTACCCACAA+GGG 0.586355 7_3:-50083251 Msa1107810:CDS
CCCAATGCAGATAAAGAAGA+CGG 0.586916 7_3:-50083807 Msa1107810:CDS
CACAATCAAGACAGAAAGCA+TGG 0.589417 7_3:+50085359 None:intergenic
TATATTGGCACCACAGCCCA+TGG 0.593045 7_3:-50083112 Msa1107810:CDS
GAATCCATCCTCTGATGGGT+CGG 0.593309 7_3:-50086471 Msa1107810:CDS
TCCTGCCTAGACATATCATA+GGG 0.595437 7_3:+50083306 None:intergenic
GAACAAGACATGGAATCTGA+AGG 0.597386 7_3:+50083579 None:intergenic
GTAGTTTGGTTTCAACATGT+GGG 0.598197 7_3:+50083062 None:intergenic
AAACTGAACAGGTTCTTGTG+GGG 0.598299 7_3:+50083500 None:intergenic
GCTCGGTCTTGCGGGAAAGG+GGG 0.598520 7_3:+50083348 None:intergenic
ATGATGGTCAAGGTTATGGT+TGG 0.600746 7_3:-50083020 Msa1107810:CDS
TCCATGTCTTGTTCTGTCGG+AGG 0.602543 7_3:-50083570 Msa1107810:CDS
CCTGCCGACCCATCAGAGGA+TGG 0.603028 7_3:+50086467 None:intergenic
TCCTTGGTACACAGGTGTGA+AGG 0.607570 7_3:-50083966 Msa1107810:intron
TGGTATGGCTGTGGATCCAA+GGG 0.610276 7_3:-50083145 Msa1107810:CDS
CCTGGTGATCATGGACATGA+TGG 0.612495 7_3:-50083036 Msa1107810:CDS
AATCTGAAGGGTGATGTTGT+TGG 0.613708 7_3:+50083592 None:intergenic
CAGACTATCAAAGTGATGGA+AGG 0.614344 7_3:-50083927 Msa1107810:CDS
GTAAACTGAACAGGTTCTTG+TGG 0.615838 7_3:+50083498 None:intergenic
ACCAATTGATTGCTGCCTGT+CGG 0.620690 7_3:+50083476 None:intergenic
AAGAATGACTTGAGACAATG+AGG 0.625934 7_3:+50083885 None:intergenic
GCAGTGGAGTCTGAGGCTGT+AGG 0.627157 7_3:+50083753 None:intergenic
GACAGAAAGCATGGTCACAA+GGG 0.629410 7_3:+50085368 None:intergenic
CAGCAAGGACCAAATGGTCA+GGG 0.633007 7_3:+50086405 None:intergenic
TCTGTCGGAGGTATGCAGCA+GGG 0.633543 7_3:-50083558 Msa1107810:CDS
AACAAGACATGGAATCTGAA+GGG 0.636590 7_3:+50083580 None:intergenic
ACCTCCGACAGAACAAGACA+TGG 0.637480 7_3:+50083569 None:intergenic
ACAAGGTGCTGGTATGGCTG+TGG 0.639763 7_3:-50083154 Msa1107810:CDS
ATTAATGGGTTACCCACAAG+GGG 0.640262 7_3:-50083250 Msa1107810:CDS
GATAACCAAATGGCACAGGT+GGG 0.645127 7_3:+50083370 None:intergenic
ACTGAACAGGTTCTTGTGGG+GGG 0.661044 7_3:+50083502 None:intergenic
GTGGATCCAAGGGATTCCAA+AGG 0.678283 7_3:-50083135 Msa1107810:CDS
GATCATGGACATGATGGTCA+AGG 0.690856 7_3:-50083030 Msa1107810:CDS
ATCTGGAAGACAGAACCCGT+CGG 0.695194 7_3:-50083677 Msa1107810:CDS
TTGCAACAGGAAGATCAGCA+AGG 0.700122 7_3:+50086390 None:intergenic
TGGGGCGAAGAAGATCGGCG+TGG 0.733508 7_3:+50083826 None:intergenic
AAGAAGGAAGAGCCTCAAAG+CGG 0.745454 7_3:-50087258 Msa1107810:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTAGTTTTTTTTTTTTA+AGG - chr7_3:50082786-50082805 Msa1107810:three_prime_UTR 10.0%
!!! ATTTTTGTTTTGAATATAAA+GGG + chr7_3:50083006-50083025 None:intergenic 10.0%
!!! TATTTTTGTTTTGAATATAA+AGG + chr7_3:50083007-50083026 None:intergenic 10.0%
!! TATTGATATGTATAAAAATT+TGG - chr7_3:50083252-50083271 Msa1107810:CDS 10.0%
!!! ATATATTACTTTTACTATAA+TGG - chr7_3:50084443-50084462 Msa1107810:intron 10.0%
!!! ATATATTACTTTTACTATAA+TGG - chr7_3:50084443-50084462 Msa1107810:intron 10.0%
!!! TATTAAAAAACTTGAATTTT+TGG - chr7_3:50086015-50086034 Msa1107810:intron 10.0%
!!! ATTAAAAAACTTGAATTTTT+GGG - chr7_3:50086016-50086035 Msa1107810:intron 10.0%
!! TAAACCCTAAATTAAAAAAA+GGG + chr7_3:50083037-50083056 None:intergenic 15.0%
!! ATAAACCCTAAATTAAAAAA+AGG + chr7_3:50083038-50083057 None:intergenic 15.0%
!!! TTTTAATTTAGGGTTTATTT+AGG - chr7_3:50083040-50083059 Msa1107810:CDS 15.0%
!!! TTTAATTTAGGGTTTATTTA+GGG - chr7_3:50083041-50083060 Msa1107810:CDS 15.0%
!! TTTAAGAAAACAAATGAAAA+AGG + chr7_3:50083428-50083447 None:intergenic 15.0%
!!! TAAGATATTTCTATAACAAA+AGG + chr7_3:50084132-50084151 None:intergenic 15.0%
!! TATAAACACTTATCATATAA+GGG + chr7_3:50084163-50084182 None:intergenic 15.0%
!! ATATAAACACTTATCATATA+AGG + chr7_3:50084164-50084183 None:intergenic 15.0%
!! CTATAAACATTTAATAAAGT+TGG - chr7_3:50084185-50084204 Msa1107810:intron 15.0%
!! ATGAAAATAATAATGTACAA+AGG + chr7_3:50085125-50085144 None:intergenic 15.0%
!! ATTTATAAAATGATATCAAG+TGG - chr7_3:50085492-50085511 Msa1107810:intron 15.0%
!! ATATTGTTTGTATGTTAAAA+AGG - chr7_3:50086125-50086144 Msa1107810:intron 15.0%
!! TATTGTTTGTATGTTAAAAA+GGG - chr7_3:50086126-50086145 Msa1107810:intron 15.0%
!!! TTTTGAAGAAAGATTAATTG+CGG + chr7_3:50082959-50082978 None:intergenic 20.0%
!! AAACCCTAAATTAAAAAAAG+GGG + chr7_3:50083036-50083055 None:intergenic 20.0%
!!! TTTTATTTGATTCATGTTTC+TGG - chr7_3:50083213-50083232 Msa1107810:CDS 20.0%
!! TTTATTTGATTCATGTTTCT+GGG - chr7_3:50083214-50083233 Msa1107810:CDS 20.0%
!!! TGCTTTTTTTATTGTTGATT+TGG - chr7_3:50083516-50083535 Msa1107810:CDS 20.0%
!!! TTTTATTGTTGATTTGGTAA+AGG - chr7_3:50083522-50083541 Msa1107810:CDS 20.0%
!! ATCAATGTAATACTTCAAAT+TGG + chr7_3:50083578-50083597 None:intergenic 20.0%
!!! TTGAAGTATTACATTGATAA+AGG - chr7_3:50083580-50083599 Msa1107810:CDS 20.0%
!! ATACTAGTTACCTTTATATT+TGG - chr7_3:50083985-50084004 Msa1107810:intron 20.0%
!! TACTAGTTACCTTTATATTT+GGG - chr7_3:50083986-50084005 Msa1107810:intron 20.0%
!! AGTAAAAGTAATATATTACG+AGG + chr7_3:50084396-50084415 None:intergenic 20.0%
!! AGTAAAAGTAATATATTACG+AGG + chr7_3:50084396-50084415 None:intergenic 20.0%
!! AGTAAAAGTAATATATTACG+AGG + chr7_3:50084396-50084415 None:intergenic 20.0%
!!! TAAAATTTTGACTTTGATAG+TGG - chr7_3:50084649-50084668 Msa1107810:intron 20.0%
!!! AAAATTTTGACTTTGATAGT+GGG - chr7_3:50084650-50084669 Msa1107810:intron 20.0%
!! AAGATAAGAAAAATACTTAC+AGG + chr7_3:50084814-50084833 None:intergenic 20.0%
!! TTTACAAAACAACTAAAAGA+GGG + chr7_3:50084995-50085014 None:intergenic 20.0%
!! ATTTACAAAACAACTAAAAG+AGG + chr7_3:50084996-50085015 None:intergenic 20.0%
!!! TAGGTGAATAATATTTCTAT+CGG - chr7_3:50085083-50085102 Msa1107810:intron 20.0%
!! AATAATAATGTACAAAGGAA+AGG + chr7_3:50085120-50085139 None:intergenic 20.0%
!! CATTAAATTTGATTACTCTA+TGG - chr7_3:50085142-50085161 Msa1107810:intron 20.0%
!!! GAATTTTAAAATTGAGAGTA+CGG - chr7_3:50085547-50085566 Msa1107810:intron 20.0%
!!! AGTTTTTTAATATAAGCATG+TGG + chr7_3:50086007-50086026 None:intergenic 20.0%
!! GATAATTTCCTTGAAAATTT+GGG + chr7_3:50086911-50086930 None:intergenic 20.0%
!!! AAAATTTTCTATTACCTCTT+TGG + chr7_3:50087297-50087316 None:intergenic 20.0%
!!! TGTTTTGAATATAAAGGGTT+TGG + chr7_3:50083001-50083020 None:intergenic 25.0%
!!! AATCCCCCTTTTTTTAATTT+AGG - chr7_3:50083029-50083048 Msa1107810:CDS 25.0%
!!! ATCCCCCTTTTTTTAATTTA+GGG - chr7_3:50083030-50083049 Msa1107810:CDS 25.0%
! AACCCTAAATTAAAAAAAGG+GGG + chr7_3:50083035-50083054 None:intergenic 25.0%
!! ATCGAATTCGATGTAATTTT+TGG + chr7_3:50083082-50083101 None:intergenic 25.0%
! TCATTGGATAGAGATAAAAT+GGG + chr7_3:50083106-50083125 None:intergenic 25.0%
! ATCATTGGATAGAGATAAAA+TGG + chr7_3:50083107-50083126 None:intergenic 25.0%
! TAAGACAACATTCATATCAT+TGG + chr7_3:50083122-50083141 None:intergenic 25.0%
! AATGATATGAATGTTGTCTT+AGG - chr7_3:50083121-50083140 Msa1107810:CDS 25.0%
! ATTGAAATATGCTTCAGATT+CGG - chr7_3:50083623-50083642 Msa1107810:CDS 25.0%
!!! TCTAACCTGTTTTTTCATTT+AGG - chr7_3:50083904-50083923 Msa1107810:CDS 25.0%
!!! AATTTTTTGGAATGAACACA+TGG + chr7_3:50084234-50084253 None:intergenic 25.0%
!!! TGTTTCTGCAATGAATTTTT+TGG + chr7_3:50084247-50084266 None:intergenic 25.0%
!! GTTGCATTTTATCAGAAATT+TGG - chr7_3:50084563-50084582 Msa1107810:intron 25.0%
!!! GTTTAGTTTGTTTTGTGATT+TGG - chr7_3:50084616-50084635 Msa1107810:intron 25.0%
! TTACAAAACAACTAAAAGAG+GGG + chr7_3:50084994-50085013 None:intergenic 25.0%
! AATATTATTCACCTATTGAC+TGG + chr7_3:50085078-50085097 None:intergenic 25.0%
! CAGTAAAATAGATACTAGAA+TGG - chr7_3:50085368-50085387 Msa1107810:CDS 25.0%
!! ACTAAAGTACTAAACTCTAA+TGG - chr7_3:50085831-50085850 Msa1107810:intron 25.0%
! TCCACTAATAAAAAGCTTAA+TGG - chr7_3:50085882-50085901 Msa1107810:intron 25.0%
!! ACCATTAAGCTTTTTATTAG+TGG + chr7_3:50085886-50085905 None:intergenic 25.0%
!! GATTATGTTTTGCAATTGAT+AGG - chr7_3:50086069-50086088 Msa1107810:intron 25.0%
! GGATAATTTCCTTGAAAATT+TGG + chr7_3:50086912-50086931 None:intergenic 25.0%
!! CTGCAATTTCTATTACATTT+TGG - chr7_3:50087219-50087238 Msa1107810:five_prime_UTR 25.0%
! TTGGAAAACTTGGAATAATA+TGG - chr7_3:50087368-50087387 Msa1107810:five_prime_UTR 25.0%
CATTGGATAGAGATAAAATG+GGG + chr7_3:50083105-50083124 None:intergenic 30.0%
AAAGTCAGACATATCAATGA+TGG - chr7_3:50083332-50083351 Msa1107810:CDS 30.0%
!! TATTGTTGATTTGGTAAAGG+AGG - chr7_3:50083525-50083544 Msa1107810:CDS 30.0%
AGAAGCCTAAATGAAAAAAC+AGG + chr7_3:50083912-50083931 None:intergenic 30.0%
TTACCTTTATATTTGGGCTT+AGG - chr7_3:50083992-50084011 Msa1107810:intron 30.0%
TACCTTTATATTTGGGCTTA+GGG - chr7_3:50083993-50084012 Msa1107810:intron 30.0%
AAAAGTCAACACCAAATCAA+AGG + chr7_3:50084359-50084378 None:intergenic 30.0%
! TTTTCTAATAGCTACCTCAA+TGG + chr7_3:50084866-50084885 None:intergenic 30.0%
! CTTTTCATTTTCCAGTCAAT+AGG - chr7_3:50085064-50085083 Msa1107810:intron 30.0%
! GTATCTATTTTACTGCAAAG+TGG + chr7_3:50085363-50085382 None:intergenic 30.0%
! TATATCTGAGACAAAACACA+AGG + chr7_3:50085423-50085442 None:intergenic 30.0%
!! GCTGAAGAACTTTTTGTTTA+AGG - chr7_3:50085462-50085481 Msa1107810:intron 30.0%
CTAGAGTTTGGAAAAAATCT+AGG - chr7_3:50085516-50085535 Msa1107810:intron 30.0%
! TGAGTCTTATGACTTATGAT+AGG + chr7_3:50085663-50085682 None:intergenic 30.0%
TTTACTCAGTTAGTTCAGTT+AGG + chr7_3:50085706-50085725 None:intergenic 30.0%
TATCTGGATATAAGCTATCA+TGG + chr7_3:50085794-50085813 None:intergenic 30.0%
AAATTCTCAACATCATGATC+TGG - chr7_3:50086431-50086450 Msa1107810:CDS 30.0%
GGTAACCCATTAATGAATTT+GGG + chr7_3:50086869-50086888 None:intergenic 30.0%
AGAGAAATGACATGAATGAT+AGG + chr7_3:50087178-50087197 None:intergenic 30.0%
TCCTTTATTGTTTACCAAAG+AGG - chr7_3:50087280-50087299 Msa1107810:five_prime_UTR 30.0%
ACCTCTTTGGTAAACAATAA+AGG + chr7_3:50087284-50087303 None:intergenic 30.0%
CCTTGTACTGAATCTATACA+CGG + chr7_3:50083388-50083407 None:intergenic 35.0%
CGTGTATAGATTCAGTACAA+GGG - chr7_3:50083386-50083405 Msa1107810:CDS 35.0%
! GATTTTCCGATTGCGATTTA+TGG - chr7_3:50083856-50083875 Msa1107810:CDS 35.0%
AACCCTAAGCCCAAATATAA+AGG + chr7_3:50083998-50084017 None:intergenic 35.0%
!! CTTTTACTATAATGGCCTTG+TGG - chr7_3:50084451-50084470 Msa1107810:intron 35.0%
ATATTACGAGGTAAACCACA+AGG + chr7_3:50084469-50084488 None:intergenic 35.0%
!! CTTTTACTATAATGGCCTTG+TGG - chr7_3:50084451-50084470 Msa1107810:intron 35.0%
TGCTAAAGAACAAAACCACA+AGG + chr7_3:50084511-50084530 None:intergenic 35.0%
! AACTAAACCACCTTTTGATG+CGG + chr7_3:50084604-50084623 None:intergenic 35.0%
CAAGGAAACTAACAAGTTCT+AGG + chr7_3:50084702-50084721 None:intergenic 35.0%
! CTTGTTAGTTTCCTTGATGT+TGG - chr7_3:50084706-50084725 Msa1107810:intron 35.0%
!! CTTGATGTTGGCTTACTATA+GGG - chr7_3:50084718-50084737 Msa1107810:intron 35.0%
TCAACAAGTGGAAAAGTAGA+GGG + chr7_3:50085217-50085236 None:intergenic 35.0%
TAGAATGATGACTCAACAAG+TGG + chr7_3:50085229-50085248 None:intergenic 35.0%
TAAAATCTGCCCACTTGAAT+AGG - chr7_3:50085290-50085309 Msa1107810:intron 35.0%
! CCATTTTCACCTATTCAAGT+GGG + chr7_3:50085302-50085321 None:intergenic 35.0%
! ACCATTTTCACCTATTCAAG+TGG + chr7_3:50085303-50085322 None:intergenic 35.0%
! ATATCAAGTGGTCTAGAGTT+TGG - chr7_3:50085504-50085523 Msa1107810:intron 35.0%
CGTATAGTAGCAGAAATATC+TGG + chr7_3:50085810-50085829 None:intergenic 35.0%
!! AGCTTTTTATTAGTGGACAC+TGG + chr7_3:50085879-50085898 None:intergenic 35.0%
GTTGCATTATGCATGCTTTA+AGG - chr7_3:50085937-50085956 Msa1107810:intron 35.0%
TTTATCACGAAAGAGCCTAT+TGG + chr7_3:50085963-50085982 None:intergenic 35.0%
AACCTTAATGTTGACCTTCA+GGG - chr7_3:50086047-50086066 Msa1107810:intron 35.0%
TTGCAAAACATAATCCCTGA+AGG + chr7_3:50086064-50086083 None:intergenic 35.0%
TTTGCAATTGATAGGTTCCA+TGG - chr7_3:50086077-50086096 Msa1107810:intron 35.0%
TTGCAATTGATAGGTTCCAT+GGG - chr7_3:50086078-50086097 Msa1107810:intron 35.0%
GAAAAGATAACTTCTACCCA+TGG + chr7_3:50086097-50086116 None:intergenic 35.0%
! AAAGGGTTTTTCATCTTCCT+TGG - chr7_3:50086143-50086162 Msa1107810:intron 35.0%
! CTTTGATAGTCTGAATCTTC+TGG + chr7_3:50086191-50086210 None:intergenic 35.0%
GATTCAGACTATCAAAGTGA+TGG - chr7_3:50086194-50086213 Msa1107810:intron 35.0%
AAGAATGACTTGAGACAATG+AGG + chr7_3:50086243-50086262 None:intergenic 35.0%
TGGAGAAAAAACTTGCCTTT+GGG + chr7_3:50086406-50086425 None:intergenic 35.0%
TGATGTTGAGAATTTGAACC+TGG + chr7_3:50086426-50086445 None:intergenic 35.0%
AACAAGACATGGAATCTGAA+GGG + chr7_3:50086548-50086567 None:intergenic 35.0%
TAAACTGAACAGGTTCTTGT+GGG + chr7_3:50086629-50086648 None:intergenic 35.0%
TACTCAGGAAATGAGTTATC+TGG + chr7_3:50086675-50086694 None:intergenic 35.0%
TGGAGACCCAAATTCATTAA+TGG - chr7_3:50086860-50086879 Msa1107810:intron 35.0%
GGAGACCCAAATTCATTAAT+GGG - chr7_3:50086861-50086880 Msa1107810:intron 35.0%
GGGTAACCCATTAATGAATT+TGG + chr7_3:50086870-50086889 None:intergenic 35.0%
CTTGAAAATTTGGGCCATTT+GGG + chr7_3:50086902-50086921 None:intergenic 35.0%
!! AATATACCTTTGGAATCCCT+TGG + chr7_3:50086999-50087018 None:intergenic 35.0%
! AAGGGATTCCAAAGGTATAT+TGG - chr7_3:50086998-50087017 Msa1107810:intron 35.0%
! GTAGTTTGGTTTCAACATGT+GGG + chr7_3:50087066-50087085 None:intergenic 35.0%
! AGTAGTTTGGTTTCAACATG+TGG + chr7_3:50087067-50087086 None:intergenic 35.0%
TTGAAACCAAACTACTATCC+TGG - chr7_3:50087071-50087090 Msa1107810:intron 35.0%
TTTAATGGTCAAGGCTGATA+AGG - chr7_3:50087149-50087168 Msa1107810:intron 35.0%
CTAGAATCGTCAAATGAGAA+TGG - chr7_3:50087334-50087353 Msa1107810:five_prime_UTR 35.0%
ATCGAATGTGTTGGAAAACT+TGG - chr7_3:50087358-50087377 Msa1107810:five_prime_UTR 35.0%
GTTGAATTGCAGAACGAAGA+AGG - chr7_3:50082851-50082870 Msa1107810:three_prime_UTR 40.0%
CTTCAATTTGAACCGCTTTG+AGG + chr7_3:50082882-50082901 None:intergenic 40.0%
ACTTTACACAGTCAGTGCAT+AGG + chr7_3:50083288-50083307 None:intergenic 40.0%
GTCAGACATATCAATGATGG+TGG - chr7_3:50083335-50083354 Msa1107810:CDS 40.0%
CCGTGTATAGATTCAGTACA+AGG - chr7_3:50083385-50083404 Msa1107810:CDS 40.0%
AGTAAGAATCCATCCTCTGA+TGG - chr7_3:50083649-50083668 Msa1107810:CDS 40.0%
GTAAGAATCCATCCTCTGAT+GGG - chr7_3:50083650-50083669 Msa1107810:CDS 40.0%
ATCACCTGTTGAGACTGTTA+CGG - chr7_3:50083690-50083709 Msa1107810:CDS 40.0%
CTACTGCTTCTTCTGTTGTT+AGG - chr7_3:50083773-50083792 Msa1107810:CDS 40.0%
TTCTTCTGTTGTTAGGAACG+TGG - chr7_3:50083780-50083799 Msa1107810:CDS 40.0%
TCTTCTGTTGTTAGGAACGT+GGG - chr7_3:50083781-50083800 Msa1107810:CDS 40.0%
TTCCGATTGCGATTTATGGA+AGG - chr7_3:50083860-50083879 Msa1107810:CDS 40.0%
AGCCTTCCATAAATCGCAAT+CGG + chr7_3:50083865-50083884 None:intergenic 40.0%
! ATTTGGGCTTAGGGTTTGTT+TGG - chr7_3:50084002-50084021 Msa1107810:intron 40.0%
ACTTGTGAAACAAGCTCTCT+AGG - chr7_3:50084059-50084078 Msa1107810:intron 40.0%
ATTGCTGGGCAGTAATTTAG+TGG - chr7_3:50084301-50084320 Msa1107810:intron 40.0%
! GTCCTTGTTTGCCTTTGATT+TGG - chr7_3:50084345-50084364 Msa1107810:intron 40.0%
CACCAAATCAAAGGCAAACA+AGG + chr7_3:50084350-50084369 None:intergenic 40.0%
AATGACATACCCGCATCAAA+AGG - chr7_3:50084591-50084610 Msa1107810:intron 40.0%
! ACTAAACCACCTTTTGATGC+GGG + chr7_3:50084603-50084622 None:intergenic 40.0%
CCTATAGTAAGCCAACATCA+AGG + chr7_3:50084720-50084739 None:intergenic 40.0%
!! CCTTGATGTTGGCTTACTAT+AGG - chr7_3:50084717-50084736 Msa1107810:intron 40.0%
CACAATCAAGACAGAAAGCA+TGG + chr7_3:50084769-50084788 None:intergenic 40.0%
CAAAGCAATGAAGACCATTG+AGG - chr7_3:50084849-50084868 Msa1107810:intron 40.0%
AACAAGACGATTACGACACA+CGG + chr7_3:50084903-50084922 None:intergenic 40.0%
CTCAACAAGTGGAAAAGTAG+AGG + chr7_3:50085218-50085237 None:intergenic 40.0%
CATCATTCTAACCTGACATG+TGG - chr7_3:50085239-50085258 Msa1107810:intron 40.0%
ATTCTAACCTGACATGTGGA+GGG - chr7_3:50085243-50085262 Msa1107810:intron 40.0%
CCCACTTGAATAGGTGAAAA+TGG - chr7_3:50085299-50085318 Msa1107810:intron 40.0%
GAAAATGGTGTCCATGCTAT+TGG - chr7_3:50085314-50085333 Msa1107810:intron 40.0%
!! ATGCATGCTTTAAGGCCAAT+AGG - chr7_3:50085945-50085964 Msa1107810:intron 40.0%
CAACCTTAATGTTGACCTTC+AGG - chr7_3:50086046-50086065 Msa1107810:intron 40.0%
ATCCCTGAAGGTCAACATTA+AGG + chr7_3:50086052-50086071 None:intergenic 40.0%
TTTCATCTTCCTTGGTACAC+AGG - chr7_3:50086151-50086170 Msa1107810:intron 40.0%
! CAGACTATCAAAGTGATGGA+AGG - chr7_3:50086198-50086217 Msa1107810:intron 40.0%
AATGAGGAGCTGCACATATT+AGG + chr7_3:50086227-50086246 None:intergenic 40.0%
CGTCTTCTTTATCTGCATTG+GGG + chr7_3:50086320-50086339 None:intergenic 40.0%
CCGTCTTCTTTATCTGCATT+GGG + chr7_3:50086321-50086340 None:intergenic 40.0%
CCCAATGCAGATAAAGAAGA+CGG - chr7_3:50086318-50086337 Msa1107810:CDS 40.0%
TCCGTCTTCTTTATCTGCAT+TGG + chr7_3:50086322-50086341 None:intergenic 40.0%
GAGAAAAAACTTGCCTTTGG+GGG + chr7_3:50086404-50086423 None:intergenic 40.0%
GGAGAAAAAACTTGCCTTTG+GGG + chr7_3:50086405-50086424 None:intergenic 40.0%
CTGGAGAAAAAACTTGCCTT+TGG + chr7_3:50086407-50086426 None:intergenic 40.0%
!!! CAAAGGCAAGTTTTTTCTCC+AGG - chr7_3:50086405-50086424 Msa1107810:CDS 40.0%
!! CAGCAAAAGCCACCATTTTT+CGG - chr7_3:50086510-50086529 Msa1107810:exon 40.0%
TGATGTTGTTGGCCGAAAAA+TGG + chr7_3:50086525-50086544 None:intergenic 40.0%
AATCTGAAGGGTGATGTTGT+TGG + chr7_3:50086536-50086555 None:intergenic 40.0%
GAACAAGACATGGAATCTGA+AGG + chr7_3:50086549-50086568 None:intergenic 40.0%
! GATTCCATGTCTTGTTCTGT+CGG - chr7_3:50086552-50086571 Msa1107810:five_prime_UTR 40.0%
AAACTGAACAGGTTCTTGTG+GGG + chr7_3:50086628-50086647 None:intergenic 40.0%
GTAAACTGAACAGGTTCTTG+TGG + chr7_3:50086630-50086649 None:intergenic 40.0%
CAGCATAAAATGGTTGAGCT+CGG + chr7_3:50086797-50086816 None:intergenic 40.0%
TCATAGGGAGCAGCATAAAA+TGG + chr7_3:50086807-50086826 None:intergenic 40.0%
TCCTGCCTAGACATATCATA+GGG + chr7_3:50086822-50086841 None:intergenic 40.0%
!! TCATTAATGGGTTACCCACA+AGG - chr7_3:50086873-50086892 Msa1107810:intron 40.0%
!! CATTAATGGGTTACCCACAA+GGG - chr7_3:50086874-50086893 Msa1107810:intron 40.0%
!! ATTAATGGGTTACCCACAAG+GGG - chr7_3:50086875-50086894 Msa1107810:intron 40.0%
CCTTGAAAATTTGGGCCATT+TGG + chr7_3:50086903-50086922 None:intergenic 40.0%
! CCAAATGGCCCAAATTTTCA+AGG - chr7_3:50086900-50086919 Msa1107810:intron 40.0%
! GTTCCTTTTGAACAAGCACA+AGG - chr7_3:50086954-50086973 Msa1107810:intron 40.0%
TGATCACCAGGATAGTAGTT+TGG + chr7_3:50087080-50087099 None:intergenic 40.0%
AACTACTATCCTGGTGATCA+TGG - chr7_3:50087080-50087099 Msa1107810:intron 40.0%
ATGATGGTCAAGGTTATGGT+TGG - chr7_3:50087105-50087124 Msa1107810:intron 40.0%
! GATAGTCGTGACAGCTTTAA+TGG - chr7_3:50087134-50087153 Msa1107810:intron 40.0%
GAGAATGGAATCGAATGTGT+TGG - chr7_3:50087349-50087368 Msa1107810:five_prime_UTR 40.0%
AAGAAGGAAGAGCCTCAAAG+CGG - chr7_3:50082867-50082886 Msa1107810:three_prime_UTR 45.0%
! AAGGAGGAGCGTGAGTAATT+TGG - chr7_3:50083541-50083560 Msa1107810:CDS 45.0%
GAAGATCAGCAAGGACCAAA+TGG + chr7_3:50083729-50083748 None:intergenic 45.0%
TTGCAACAGGAAGATCAGCA+AGG + chr7_3:50083738-50083757 None:intergenic 45.0%
TGCTGATCTTCCTGTTGCAA+AGG - chr7_3:50083738-50083757 Msa1107810:CDS 45.0%
GCTGATCTTCCTGTTGCAAA+GGG - chr7_3:50083739-50083758 Msa1107810:CDS 45.0%
! CTTCCTGTTGCAAAGGGTAT+TGG - chr7_3:50083745-50083764 Msa1107810:CDS 45.0%
GTACCAATACCCTTTGCAAC+AGG + chr7_3:50083751-50083770 None:intergenic 45.0%
GATTGCGATTTATGGAAGGC+TGG - chr7_3:50083864-50083883 Msa1107810:CDS 45.0%
CATTTAGGCTTCTGCTTGCT+AGG - chr7_3:50083919-50083938 Msa1107810:CDS 45.0%
AAGCATGCTAGCTGAATTGC+TGG - chr7_3:50084286-50084305 Msa1107810:intron 45.0%
AGCATGCTAGCTGAATTGCT+GGG - chr7_3:50084287-50084306 Msa1107810:intron 45.0%
! GTTGGCTTACTATAGGGTTG+TGG - chr7_3:50084724-50084743 Msa1107810:intron 45.0%
! GACAGAAAGCATGGTCACAA+GGG + chr7_3:50084760-50084779 None:intergenic 45.0%
! AGACAGAAAGCATGGTCACA+AGG + chr7_3:50084761-50084780 None:intergenic 45.0%
GATTACGACACACGGAATAG+TGG + chr7_3:50084895-50084914 None:intergenic 45.0%
CATTCTAACCTGACATGTGG+AGG - chr7_3:50085242-50085261 Msa1107810:intron 45.0%
CTACACACATGCCAATAGCA+TGG + chr7_3:50085328-50085347 None:intergenic 45.0%
TGAGCCTATGTGCAAGTGTA+AGG - chr7_3:50085912-50085931 Msa1107810:intron 45.0%
ACAGCCTTACACTTGCACAT+AGG + chr7_3:50085919-50085938 None:intergenic 45.0%
CTTGAAGGAGCTTGATCTCT+TGG + chr7_3:50086480-50086499 None:intergenic 45.0%
CAAGAGATCAAGCTCCTTCA+AGG - chr7_3:50086478-50086497 Msa1107810:CDS 45.0%
TGTTGTTGGCCGAAAAATGG+TGG + chr7_3:50086522-50086541 None:intergenic 45.0%
AACTGAACAGGTTCTTGTGG+GGG + chr7_3:50086627-50086646 None:intergenic 45.0%
AACCTGTTCAGTTTACCGAC+AGG - chr7_3:50086634-50086653 Msa1107810:intron 45.0%
ACCAATTGATTGCTGCCTGT+CGG + chr7_3:50086652-50086671 None:intergenic 45.0%
GATAACCAAATGGCACAGGT+GGG + chr7_3:50086758-50086777 None:intergenic 45.0%
CTGCTCCCTATGATATGTCT+AGG - chr7_3:50086814-50086833 Msa1107810:intron 45.0%
TCCCTATGATATGTCTAGGC+AGG - chr7_3:50086818-50086837 Msa1107810:intron 45.0%
GTCCTGCCTAGACATATCAT+AGG + chr7_3:50086823-50086842 None:intergenic 45.0%
CAGGACTCGTCTTCTGATAT+TGG - chr7_3:50086837-50086856 Msa1107810:intron 45.0%
GACTCGTCTTCTGATATTGG+TGG - chr7_3:50086840-50086859 Msa1107810:intron 45.0%
GCACCTTGTGCTTGTTCAAA+AGG + chr7_3:50086960-50086979 None:intergenic 45.0%
TTTGAACAAGCACAAGGTGC+TGG - chr7_3:50086960-50086979 Msa1107810:intron 45.0%
! CTGTGGTGCCAATATACCTT+TGG + chr7_3:50087009-50087028 None:intergenic 45.0%
! TTTGGTTTCAACATGTGGGC+TGG + chr7_3:50087062-50087081 None:intergenic 45.0%
GATCATGGACATGATGGTCA+AGG - chr7_3:50087095-50087114 Msa1107810:intron 45.0%
GGACATGATGGTCAAGGTTA+TGG - chr7_3:50087101-50087120 Msa1107810:intron 45.0%
! CGTGACAGCTTTAATGGTCA+AGG - chr7_3:50087140-50087159 Msa1107810:intron 45.0%
! GAATCCATCCTCTGATGGGT+CGG - chr7_3:50083654-50083673 Msa1107810:CDS 50.0%
GCAACCGTAACAGTCTCAAC+AGG + chr7_3:50083697-50083716 None:intergenic 50.0%
CAGCAAGGACCAAATGGTCA+GGG + chr7_3:50083723-50083742 None:intergenic 50.0%
TCAGCAAGGACCAAATGGTC+AGG + chr7_3:50083724-50083743 None:intergenic 50.0%
AATGAACTCGCTCACCAAGC+TGG + chr7_3:50083822-50083841 None:intergenic 50.0%
! TAGGCTTCTGCTTGCTAGGA+TGG - chr7_3:50083923-50083942 Msa1107810:CDS 50.0%
GACATACCCGCATCAAAAGG+TGG - chr7_3:50084594-50084613 Msa1107810:intron 50.0%
TCAGTTAGGCTGAGTCAGCT+AGG + chr7_3:50085692-50085711 None:intergenic 50.0%
TCCTTGGTACACAGGTGTGA+AGG - chr7_3:50086159-50086178 Msa1107810:intron 50.0%
TCCTTCACACCTGTGTACCA+AGG + chr7_3:50086163-50086182 None:intergenic 50.0%
GAAGATCGGCGTGGAATTCA+TGG + chr7_3:50086293-50086312 None:intergenic 50.0%
TGCATTGGGGCGAAGAAGAT+CGG + chr7_3:50086307-50086326 None:intergenic 50.0%
ATCTGGAAGACAGAACCCGT+CGG - chr7_3:50086448-50086467 Msa1107810:CDS 50.0%
GAAGGAGCTTGATCTCTTGG+TGG + chr7_3:50086477-50086496 None:intergenic 50.0%
! TCCATGTCTTGTTCTGTCGG+AGG - chr7_3:50086555-50086574 Msa1107810:five_prime_UTR 50.0%
ACCTCCGACAGAACAAGACA+TGG + chr7_3:50086559-50086578 None:intergenic 50.0%
ACTGAACAGGTTCTTGTGGG+GGG + chr7_3:50086626-50086645 None:intergenic 50.0%
TGCCTGTCGGTAAACTGAAC+AGG + chr7_3:50086639-50086658 None:intergenic 50.0%
ACCGACAGGCAGCAATCAAT+TGG - chr7_3:50086648-50086667 Msa1107810:intron 50.0%
GGGTGCATTGTTGGATACTC+AGG + chr7_3:50086690-50086709 None:intergenic 50.0%
!! GAACATTGGTGGGTTGTGCA+GGG + chr7_3:50086710-50086729 None:intergenic 50.0%
! TCAGCATTGGGTTTGGGTGT+GGG + chr7_3:50086734-50086753 None:intergenic 50.0%
! TTCAGCATTGGGTTTGGGTG+TGG + chr7_3:50086735-50086754 None:intergenic 50.0%
! GTGGGTTCAGCATTGGGTTT+GGG + chr7_3:50086740-50086759 None:intergenic 50.0%
GGATAACCAAATGGCACAGG+TGG + chr7_3:50086759-50086778 None:intergenic 50.0%
GGGAAAGGGGGATAACCAAA+TGG + chr7_3:50086768-50086787 None:intergenic 50.0%
AATGGTTGAGCTCGGTCTTG+CGG + chr7_3:50086789-50086808 None:intergenic 50.0%
AAGGAAATTATCCCCAGCCC+TGG - chr7_3:50086919-50086938 Msa1107810:intron 50.0%
!! ACAAGCACAAGGTGCTGGTA+TGG - chr7_3:50086965-50086984 Msa1107810:intron 50.0%
TGGTATGGCTGTGGATCCAA+GGG - chr7_3:50086980-50086999 Msa1107810:intron 50.0%
GTGGATCCAAGGGATTCCAA+AGG - chr7_3:50086990-50087009 Msa1107810:intron 50.0%
TATATTGGCACCACAGCCCA+TGG - chr7_3:50087013-50087032 Msa1107810:intron 50.0%
CCATCATGTCCATGATCACC+AGG + chr7_3:50087092-50087111 None:intergenic 50.0%
CCTGGTGATCATGGACATGA+TGG - chr7_3:50087089-50087108 Msa1107810:intron 50.0%
AAGGACCAAATGGTCAGGGC+AGG + chr7_3:50083719-50083738 None:intergenic 55.0%
CTAACCTGACATGTGGAGGG+AGG - chr7_3:50085246-50085265 Msa1107810:intron 55.0%
AACACCTCCCTCCACATGTC+AGG + chr7_3:50085253-50085272 None:intergenic 55.0%
! ATCTCTTGGTGGTTGCCGAC+GGG + chr7_3:50086466-50086485 None:intergenic 55.0%
! GATCTCTTGGTGGTTGCCGA+CGG + chr7_3:50086467-50086486 None:intergenic 55.0%
!! TGCTGCATTGCTGGCCTTGA+AGG + chr7_3:50086495-50086514 None:intergenic 55.0%
! GGTGGCTTTTGCTGCATTGC+TGG + chr7_3:50086504-50086523 None:intergenic 55.0%
! TTCTGTCGGAGGTATGCAGC+AGG - chr7_3:50086566-50086585 Msa1107810:five_prime_UTR 55.0%
! TCTGTCGGAGGTATGCAGCA+GGG - chr7_3:50086567-50086586 Msa1107810:five_prime_UTR 55.0%
GGTTGTGCAGGGTGCATTGT+TGG + chr7_3:50086699-50086718 None:intergenic 55.0%
!! GGAACATTGGTGGGTTGTGC+AGG + chr7_3:50086711-50086730 None:intergenic 55.0%
GTTTGGGTGTGGGGGAACAT+TGG + chr7_3:50086724-50086743 None:intergenic 55.0%
! AGCATTGGGTTTGGGTGTGG+GGG + chr7_3:50086732-50086751 None:intergenic 55.0%
! CAGCATTGGGTTTGGGTGTG+GGG + chr7_3:50086733-50086752 None:intergenic 55.0%
! GGTGGGTTCAGCATTGGGTT+TGG + chr7_3:50086741-50086760 None:intergenic 55.0%
! GCACAGGTGGGTTCAGCATT+GGG + chr7_3:50086746-50086765 None:intergenic 55.0%
! CTGAACCCACCTGTGCCATT+TGG - chr7_3:50086750-50086769 Msa1107810:intron 55.0%
GGGGGATAACCAAATGGCAC+AGG + chr7_3:50086762-50086781 None:intergenic 55.0%
ATGGTTGAGCTCGGTCTTGC+GGG + chr7_3:50086788-50086807 None:intergenic 55.0%
TACCCACAAGGGGTCCCAAA+TGG - chr7_3:50086885-50086904 Msa1107810:intron 55.0%
GGAACACCTGCTGCATTCCA+GGG + chr7_3:50086939-50086958 None:intergenic 55.0%
AGGAACACCTGCTGCATTCC+AGG + chr7_3:50086940-50086959 None:intergenic 55.0%
!! ACAAGGTGCTGGTATGGCTG+TGG - chr7_3:50086971-50086990 Msa1107810:intron 55.0%
CTGGTATGGCTGTGGATCCA+AGG - chr7_3:50086979-50086998 Msa1107810:intron 55.0%
!! TTCAACATGTGGGCTGGAGG+TGG + chr7_3:50087056-50087075 None:intergenic 55.0%
!! GGTTTCAACATGTGGGCTGG+AGG + chr7_3:50087059-50087078 None:intergenic 55.0%
GGTTGCCTGCCCTGACCATT+TGG - chr7_3:50083711-50083730 Msa1107810:CDS 60.0%
! GCAGTGGAGTCTGAGGCTGT+AGG + chr7_3:50086375-50086394 None:intergenic 60.0%
GGGTGTGGGGGAACATTGGT+GGG + chr7_3:50086720-50086739 None:intergenic 60.0%
TGGGTGTGGGGGAACATTGG+TGG + chr7_3:50086721-50086740 None:intergenic 60.0%
! GGCACAGGTGGGTTCAGCAT+TGG + chr7_3:50086747-50086766 None:intergenic 60.0%
AGCTCGGTCTTGCGGGAAAG+GGG + chr7_3:50086781-50086800 None:intergenic 60.0%
GAGCTCGGTCTTGCGGGAAA+GGG + chr7_3:50086782-50086801 None:intergenic 60.0%
TGAGCTCGGTCTTGCGGGAA+AGG + chr7_3:50086783-50086802 None:intergenic 60.0%
! GGCCATTTGGGACCCCTTGT+GGG + chr7_3:50086890-50086909 None:intergenic 60.0%
ACCTGCTGCATTCCAGGGCT+GGG + chr7_3:50086934-50086953 None:intergenic 60.0%
!! AACATGTGGGCTGGAGGTGG+TGG + chr7_3:50087053-50087072 None:intergenic 60.0%
CCTGCCGACCCATCAGAGGA+TGG + chr7_3:50083661-50083680 None:intergenic 65.0%
! CCATCCTCTGATGGGTCGGC+AGG - chr7_3:50083658-50083677 Msa1107810:CDS 65.0%
TCGCTCACCAAGCTGGCGAC+GGG + chr7_3:50083815-50083834 None:intergenic 65.0%
CTCGCTCACCAAGCTGGCGA+CGG + chr7_3:50083816-50083835 None:intergenic 65.0%
TGGGGCGAAGAAGATCGGCG+TGG + chr7_3:50086302-50086321 None:intergenic 65.0%
GCCTCAGACTCCACTGCTCG+AGG - chr7_3:50086378-50086397 Msa1107810:CDS 65.0%
GCCTCGAGCAGTGGAGTCTG+AGG + chr7_3:50086382-50086401 None:intergenic 65.0%
GCTCGGTCTTGCGGGAAAGG+GGG + chr7_3:50086780-50086799 None:intergenic 65.0%
! GGGCCATTTGGGACCCCTTG+TGG + chr7_3:50086891-50086910 None:intergenic 65.0%
CCTGCTGCATTCCAGGGCTG+GGG + chr7_3:50086933-50086952 None:intergenic 65.0%
CACCTGCTGCATTCCAGGGC+TGG + chr7_3:50086935-50086954 None:intergenic 65.0%
!! GGTGGTGGTGGGAGAGCCAT+GGG + chr7_3:50087032-50087051 None:intergenic 65.0%
!! TGGTGGTGGTGGGAGAGCCA+TGG + chr7_3:50087033-50087052 None:intergenic 65.0%
!! CTGGAGGTGGTGGTGGTGGT+GGG + chr7_3:50087043-50087062 None:intergenic 65.0%
!! ATGTGGGCTGGAGGTGGTGG+TGG + chr7_3:50087050-50087069 None:intergenic 65.0%
CACGCCTGCCGACCCATCAG+AGG + chr7_3:50083665-50083684 None:intergenic 70.0%
CGCAGATCCCGTCGCCAGCT+TGG - chr7_3:50083805-50083824 Msa1107810:CDS 70.0%
! CCTTTGGGGGCCTCGAGCAG+TGG + chr7_3:50086391-50086410 None:intergenic 70.0%
CCACTGCTCGAGGCCCCCAA+AGG - chr7_3:50086388-50086407 Msa1107810:CDS 70.0%
CCCCAGCCCTGGAATGCAGC+AGG - chr7_3:50086930-50086949 Msa1107810:intron 70.0%
! GGTGGGAGAGCCATGGGCTG+TGG + chr7_3:50087026-50087045 None:intergenic 70.0%
!! GCTGGAGGTGGTGGTGGTGG+TGG + chr7_3:50087044-50087063 None:intergenic 70.0%
!! TGGGCTGGAGGTGGTGGTGG+TGG + chr7_3:50087047-50087066 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 50082730 50087417 50082730 ID=Msa1107810;Name=Msa1107810
chr7_3 mRNA 50082730 50087417 50082730 ID=Msa1107810-mRNA-1;Parent=Msa1107810;Name=Msa1107810-mRNA-1;_AED=0.11;_eAED=0.11;_QI=305|1|1|1|0.66|0.5|4|251|435
chr7_3 exon 50082730 50083974 50082730 ID=Msa1107810-mRNA-1:exon:10231;Parent=Msa1107810-mRNA-1
chr7_3 exon 50085334 50085392 50085334 ID=Msa1107810-mRNA-1:exon:10230;Parent=Msa1107810-mRNA-1
chr7_3 exon 50086262 50086603 50086262 ID=Msa1107810-mRNA-1:exon:10229;Parent=Msa1107810-mRNA-1
chr7_3 exon 50087200 50087417 50087200 ID=Msa1107810-mRNA-1:exon:10228;Parent=Msa1107810-mRNA-1
chr7_3 five_prime_UTR 50087200 50087417 50087200 ID=Msa1107810-mRNA-1:five_prime_utr;Parent=Msa1107810-mRNA-1
chr7_3 five_prime_UTR 50086517 50086603 50086517 ID=Msa1107810-mRNA-1:five_prime_utr;Parent=Msa1107810-mRNA-1
chr7_3 CDS 50086262 50086516 50086262 ID=Msa1107810-mRNA-1:cds;Parent=Msa1107810-mRNA-1
chr7_3 CDS 50085334 50085392 50085334 ID=Msa1107810-mRNA-1:cds;Parent=Msa1107810-mRNA-1
chr7_3 CDS 50082981 50083974 50082981 ID=Msa1107810-mRNA-1:cds;Parent=Msa1107810-mRNA-1
chr7_3 three_prime_UTR 50082730 50082980 50082730 ID=Msa1107810-mRNA-1:three_prime_utr;Parent=Msa1107810-mRNA-1
Gene Sequence

>Msa1107810

ATGCTTCAGATTCGGCTTAGTAAGAATCCATCCTCTGATGGGTCGGCAGGCGTGAAGCAATCACCTGTTGAGACTGTTACGGTTGCCTGCCCTGACCATTTGGTCCTTGCTGATCTTCCTGTTGCAAAGGGTATTGGTACAGCTACTGCTTCTTCTGTTGTTAGGAACGTGGGTCGCAGATCCCGTCGCCAGCTTGGTGAGCGAGTTCATTTCTGTGTTCGATGTGATTTTCCGATTGCGATTTATGGAAGGCTGAGCCCTTGTGACCATGCTTTCTGTCTTGATTGTGCTAGAAGTGATTCATCGTGCTACCTGTGTGAAGGACGAATCCAGAAGATTCAGACTATCAAAGTGATGGAAGGAATCCTAATATGTGCAGCTCCTCATTGTCTCAAGTCATTCTTGAAGAGAGTTGATTTTGAATCTCATATCCATGAATTCCACGCCGATCTTCTTCGCCCCAATGCAGATAAAGAAGACGGAAATGAGTCAGAAGCACAAAGTGTTAGACAACCTACAGCCTCAGACTCCACTGCTCGAGGCCCCCAAAGGCAAGTTTTTTCTCCAGGTTCAAATTCTCAACATCATGATCTGGAAGACAGAACCCGTCGGCAACCACCAAGAGATCAAGCTCCTTCAAGGCCAGCAATGCAGCAAAAGCCACCATTTTTCGGCCAACAACATCACCCTTCAGATTCCATGTCTTGTTCTGTCGGAGGTATGCAGCAGGGCTTTCATCAACAAAGTTTCGACATGCAGCAGCACCCCCCACAAGAACCTGTTCAGTTTACCGACAGGCAGCAATCAATTGGTCCAGATAACTCATTTCCTGAGTATCCAACAATGCACCCTGCACAACCCACCAATGTTCCCCCACACCCAAACCCAATGCTGAACCCACCTGTGCCATTTGGTTATCCCCCTTTCCCGCAAGACCGAGCTCAACCATTTTATGCTGCTCCCTATGATATGTCTAGGCAGGACTCGTCTTCTGATATTGGTGGAGACCCAAATTCATTAATGGGTTACCCACAAGGGGTCCCAAATGGCCCAAATTTTCAAGGAAATTATCCCCAGCCCTGGAATGCAGCAGGTGTTCCTTTTGAACAAGCACAAGGTGCTGGTATGGCTGTGGATCCAAGGGATTCCAAAGGTATATTGGCACCACAGCCCATGGCTCTCCCACCACCACCACCACCTCCAGCCCACATGTTGAAACCAAACTACTATCCTGGTGATCATGGACATGATGGTCAAGGTTATGGTTGGCAGCATGATAGTCGTGACAGCTTTAATGGTCAAGGCTGA

Protein sequence

>Msa1107810

MLQIRLSKNPSSDGSAGVKQSPVETVTVACPDHLVLADLPVAKGIGTATASSVVRNVGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCDHAFCLDCARSDSSCYLCEGRIQKIQTIKVMEGILICAAPHCLKSFLKRVDFESHIHEFHADLLRPNADKEDGNESEAQSVRQPTASDSTARGPQRQVFSPGSNSQHHDLEDRTRRQPPRDQAPSRPAMQQKPPFFGQQHHPSDSMSCSVGGMQQGFHQQSFDMQQHPPQEPVQFTDRQQSIGPDNSFPEYPTMHPAQPTNVPPHPNPMLNPPVPFGYPPFPQDRAQPFYAAPYDMSRQDSSSDIGGDPNSLMGYPQGVPNGPNFQGNYPQPWNAAGVPFEQAQGAGMAVDPRDSKGILAPQPMALPPPPPPPAHMLKPNYYPGDHGHDGQGYGWQHDSRDSFNGQG*