Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1298440 | sp|Q8LBB2|KING1_ARATH | 63.415 | 410 | 113 | 5 | 24 | 404 | 23 | 424 | 8.22e-179 | 507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1298440 | G7JLE4 | 87.500 | 432 | 26 | 3 | 1 | 404 | 1 | 432 | 0.0 | 715 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003370 | Msa1298440 | -0.813433 | 2.566177e-51 | -8.615850e-47 |
| Msa0025060 | Msa1298440 | -0.865701 | 4.879756e-65 | -8.615850e-47 |
| Msa0025090 | Msa1298440 | -0.829505 | 4.957182e-55 | -8.615850e-47 |
| Msa0032040 | Msa1298440 | -0.806396 | 8.394152e-50 | -8.615850e-47 |
| Msa0034800 | Msa1298440 | -0.834201 | 3.437772e-56 | -8.615850e-47 |
| Msa0036560 | Msa1298440 | -0.841235 | 5.372469e-58 | -8.615850e-47 |
| Msa0046680 | Msa1298440 | 0.820113 | 8.142286e-53 | -8.615850e-47 |
| Msa0047990 | Msa1298440 | 0.827691 | 1.360170e-54 | -8.615850e-47 |
| Msa0072590 | Msa1298440 | -0.825988 | 3.471868e-54 | -8.615850e-47 |
| Msa0072910 | Msa1298440 | -0.814599 | 1.419116e-51 | -8.615850e-47 |
| Msa0076640 | Msa1298440 | 0.814896 | 1.219841e-51 | -8.615850e-47 |
| Msa0081700 | Msa1298440 | -0.803229 | 3.851347e-49 | -8.615850e-47 |
| Msa0089410 | Msa1298440 | -0.825410 | 4.758594e-54 | -8.615850e-47 |
| Msa0092390 | Msa1298440 | -0.803738 | 3.021271e-49 | -8.615850e-47 |
| Msa0099090 | Msa1298440 | -0.800374 | 1.485430e-48 | -8.615850e-47 |
| Msa0604890 | Msa1298440 | -0.803736 | 3.022897e-49 | -8.615850e-47 |
| Msa0619460 | Msa1298440 | -0.832074 | 1.163121e-55 | -8.615850e-47 |
| Msa0619520 | Msa1298440 | -0.824913 | 6.238489e-54 | -8.615850e-47 |
| Msa0622070 | Msa1298440 | 0.805697 | 1.177722e-49 | -8.615850e-47 |
| Msa0624890 | Msa1298440 | -0.805385 | 1.369344e-49 | -8.615850e-47 |
| Msa0646180 | Msa1298440 | -0.809397 | 1.931163e-50 | -8.615850e-47 |
| Msa0659590 | Msa1298440 | -0.827022 | 1.967416e-54 | -8.615850e-47 |
| Msa0665010 | Msa1298440 | -0.833709 | 4.564060e-56 | -8.615850e-47 |
| Msa0667710 | Msa1298440 | -0.802132 | 6.486592e-49 | -8.615850e-47 |
| Msa0690920 | Msa1298440 | -0.805053 | 1.606842e-49 | -8.615850e-47 |
| Msa0709820 | Msa1298440 | 0.817780 | 2.761422e-52 | -8.615850e-47 |
| Msa0721260 | Msa1298440 | 0.819295 | 1.251637e-52 | -8.615850e-47 |
| Msa0742690 | Msa1298440 | -0.818526 | 1.872041e-52 | -8.615850e-47 |
| Msa0743630 | Msa1298440 | -0.843401 | 1.433035e-58 | -8.615850e-47 |
| Msa0747500 | Msa1298440 | 0.810293 | 1.239063e-50 | -8.615850e-47 |
| Msa0753410 | Msa1298440 | 0.859771 | 3.284636e-63 | -8.615850e-47 |
| Msa0777210 | Msa1298440 | 0.802390 | 5.738536e-49 | -8.615850e-47 |
| Msa0779830 | Msa1298440 | -0.822070 | 2.883176e-53 | -8.615850e-47 |
| Msa0783680 | Msa1298440 | 0.810185 | 1.307192e-50 | -8.615850e-47 |
| Msa0795330 | Msa1298440 | 0.857812 | 1.264387e-62 | -8.615850e-47 |
| Msa0814350 | Msa1298440 | 0.810705 | 1.009297e-50 | -8.615850e-47 |
| Msa0824750 | Msa1298440 | -0.813943 | 1.981595e-51 | -8.615850e-47 |
| Msa0826360 | Msa1298440 | 0.823663 | 1.226947e-53 | -8.615850e-47 |
| Msa0827560 | Msa1298440 | -0.819962 | 8.817285e-53 | -8.615850e-47 |
| Msa0841550 | Msa1298440 | 0.813831 | 2.097553e-51 | -8.615850e-47 |
| Msa0121080 | Msa1298440 | -0.816536 | 5.257698e-52 | -8.615850e-47 |
| Msa0136520 | Msa1298440 | -0.839180 | 1.848570e-57 | -8.615850e-47 |
| Msa0139280 | Msa1298440 | -0.842245 | 2.908186e-58 | -8.615850e-47 |
| Msa0146570 | Msa1298440 | -0.818878 | 1.557299e-52 | -8.615850e-47 |
| Msa0170640 | Msa1298440 | -0.801788 | 7.632310e-49 | -8.615850e-47 |
| Msa0172110 | Msa1298440 | -0.835041 | 2.113080e-56 | -8.615850e-47 |
| Msa0173260 | Msa1298440 | 0.840650 | 7.653636e-58 | -8.615850e-47 |
| Msa0174800 | Msa1298440 | -0.810353 | 1.202095e-50 | -8.615850e-47 |
| Msa0176610 | Msa1298440 | -0.866199 | 3.394778e-65 | -8.615850e-47 |
| Msa0183960 | Msa1298440 | -0.808396 | 3.161172e-50 | -8.615850e-47 |
| Msa0186380 | Msa1298440 | -0.804830 | 1.789728e-49 | -8.615850e-47 |
| Msa0192890 | Msa1298440 | 0.862533 | 4.738648e-64 | -8.615850e-47 |
| Msa0194370 | Msa1298440 | -0.802682 | 4.996947e-49 | -8.615850e-47 |
| Msa0200090 | Msa1298440 | 0.802369 | 5.795604e-49 | -8.615850e-47 |
| Msa0201910 | Msa1298440 | -0.808659 | 2.778286e-50 | -8.615850e-47 |
| Msa0206600 | Msa1298440 | -0.808791 | 2.603764e-50 | -8.615850e-47 |
| Msa0207220 | Msa1298440 | -0.816832 | 4.512811e-52 | -8.615850e-47 |
| Msa0207900 | Msa1298440 | -0.800942 | 1.137616e-48 | -8.615850e-47 |
| Msa0219140 | Msa1298440 | -0.827055 | 1.932501e-54 | -8.615850e-47 |
| Msa0226580 | Msa1298440 | -0.817601 | 3.030321e-52 | -8.615850e-47 |
| Msa0235020 | Msa1298440 | 0.835315 | 1.802822e-56 | -8.615850e-47 |
| Msa1235960 | Msa1298440 | -0.821907 | 3.146190e-53 | -8.615850e-47 |
| Msa1235990 | Msa1298440 | -0.829225 | 5.797557e-55 | -8.615850e-47 |
| Msa1251890 | Msa1298440 | -0.800887 | 1.167364e-48 | -8.615850e-47 |
| Msa1251960 | Msa1298440 | -0.805773 | 1.135462e-49 | -8.615850e-47 |
| Msa1252220 | Msa1298440 | -0.808259 | 3.381350e-50 | -8.615850e-47 |
| Msa1257170 | Msa1298440 | 0.884666 | 1.577316e-71 | -8.615850e-47 |
| Msa1258600 | Msa1298440 | 0.979438 | 5.725050e-148 | -8.615850e-47 |
| Msa1267800 | Msa1298440 | -0.800354 | 1.499448e-48 | -8.615850e-47 |
| Msa1292560 | Msa1298440 | 0.805436 | 1.336449e-49 | -8.615850e-47 |
| Msa1295840 | Msa1298440 | -0.805798 | 1.121711e-49 | -8.615850e-47 |
| Msa1298440 | Msa1302120 | 0.865236 | 6.838013e-65 | -8.615850e-47 |
| Msa1298440 | Msa1304980 | 0.839354 | 1.666398e-57 | -8.615850e-47 |
| Msa1298440 | Msa1314810 | 0.809383 | 1.944002e-50 | -8.615850e-47 |
| Msa1298440 | Msa1316090 | -0.819327 | 1.231255e-52 | -8.615850e-47 |
| Msa1298440 | Msa1327400 | -0.803898 | 2.797810e-49 | -8.615850e-47 |
| Msa1298440 | Msa1336130 | 0.828623 | 8.110343e-55 | -8.615850e-47 |
| Msa1298440 | Msa1344870 | -0.800880 | 1.171180e-48 | -8.615850e-47 |
| Msa1298440 | Msa1357760 | -0.833058 | 6.632049e-56 | -8.615850e-47 |
| Msa1298440 | Msa1359880 | -0.806229 | 9.104656e-50 | -8.615850e-47 |
| Msa1298440 | Msa1370830 | -0.803118 | 4.060681e-49 | -8.615850e-47 |
| Msa1298440 | Msa1375640 | 0.848866 | 4.662991e-60 | -8.615850e-47 |
| Msa1298440 | Msa1376520 | 0.856127 | 3.968337e-62 | -8.615850e-47 |
| Msa1298440 | Msa1386150 | 0.822954 | 1.796286e-53 | -8.615850e-47 |
| Msa1298440 | Msa1392990 | -0.802475 | 5.512116e-49 | -8.615850e-47 |
| Msa1298440 | Msa1395700 | -0.849247 | 3.655484e-60 | -8.615850e-47 |
| Msa1298440 | Msa1397550 | -0.840183 | 1.013945e-57 | -8.615850e-47 |
| Msa1298440 | Msa1398110 | 0.822282 | 2.575423e-53 | -8.615850e-47 |
| Msa1298440 | Msa1400940 | 0.978177 | 2.772405e-145 | -8.615850e-47 |
| Msa1298440 | Msa1402000 | 0.830473 | 2.878889e-55 | -8.615850e-47 |
| Msa1298440 | Msa1420630 | -0.808322 | 3.278651e-50 | -8.615850e-47 |
| Msa1298440 | Msa1425570 | -0.808328 | 3.268530e-50 | -8.615850e-47 |
| Msa1298440 | Msa1429190 | 0.841432 | 4.769494e-58 | -8.615850e-47 |
| Msa1298440 | Msa1431050 | 0.827603 | 1.428121e-54 | -8.615850e-47 |
| Msa1298440 | Msa1449510 | -0.815805 | 7.659756e-52 | -8.615850e-47 |
| Msa1298440 | Msa1459930 | 0.829183 | 5.937591e-55 | -8.615850e-47 |
| Msa0369660 | Msa1298440 | 0.876655 | 1.174816e-68 | -8.615850e-47 |
| Msa0378570 | Msa1298440 | -0.802014 | 6.857087e-49 | -8.615850e-47 |
| Msa0384220 | Msa1298440 | 0.850035 | 2.202545e-60 | -8.615850e-47 |
| Msa0385870 | Msa1298440 | -0.807649 | 4.558381e-50 | -8.615850e-47 |
| Msa0387180 | Msa1298440 | 0.879211 | 1.500022e-69 | -8.615850e-47 |
| Msa0412820 | Msa1298440 | 0.806689 | 7.282947e-50 | -8.615850e-47 |
| Msa0417060 | Msa1298440 | 0.820088 | 8.251129e-53 | -8.615850e-47 |
| Msa0421690 | Msa1298440 | 0.849754 | 2.639163e-60 | -8.615850e-47 |
| Msa0427850 | Msa1298440 | 0.865232 | 6.856743e-65 | -8.615850e-47 |
| Msa0434890 | Msa1298440 | 0.802572 | 5.263435e-49 | -8.615850e-47 |
| Msa0453940 | Msa1298440 | 0.801680 | 8.033381e-49 | -8.615850e-47 |
| Msa0463890 | Msa1298440 | 0.886090 | 4.628568e-72 | -8.615850e-47 |
| Msa0465420 | Msa1298440 | 0.837996 | 3.738264e-57 | -8.615850e-47 |
| Msa0466850 | Msa1298440 | 0.820864 | 5.476138e-53 | -8.615850e-47 |
| Msa0468050 | Msa1298440 | 0.871354 | 7.285288e-67 | -8.615850e-47 |
| Msa0474080 | Msa1298440 | 0.852403 | 4.723588e-61 | -8.615850e-47 |
| Msa0481580 | Msa1298440 | -0.802452 | 5.573850e-49 | -8.615850e-47 |
| Msa0482360 | Msa1298440 | 0.905980 | 2.416413e-80 | -8.615850e-47 |
| Msa0982340 | Msa1298440 | 0.820859 | 5.490770e-53 | -8.615850e-47 |
| Msa1007160 | Msa1298440 | 0.810676 | 1.023976e-50 | -8.615850e-47 |
| Msa1014530 | Msa1298440 | -0.804272 | 2.338840e-49 | -8.615850e-47 |
| Msa1034870 | Msa1298440 | 0.862020 | 6.808975e-64 | -8.615850e-47 |
| Msa1041620 | Msa1298440 | -0.816510 | 5.328978e-52 | -8.615850e-47 |
| Msa1049810 | Msa1298440 | 0.826737 | 2.301560e-54 | -8.615850e-47 |
| Msa1050320 | Msa1298440 | -0.815641 | 8.332412e-52 | -8.615850e-47 |
| Msa1074910 | Msa1298440 | 0.830520 | 2.804305e-55 | -8.615850e-47 |
| Msa1081650 | Msa1298440 | -0.844379 | 7.842412e-59 | -8.615850e-47 |
| Msa1101480 | Msa1298440 | -0.801612 | 8.292697e-49 | -8.615850e-47 |
| Msa0244370 | Msa1298440 | -0.817306 | 3.531997e-52 | -8.615850e-47 |
| Msa0249670 | Msa1298440 | -0.812324 | 4.489368e-51 | -8.615850e-47 |
| Msa0258960 | Msa1298440 | -0.825523 | 4.474935e-54 | -8.615850e-47 |
| Msa0273420 | Msa1298440 | 0.840671 | 7.555441e-58 | -8.615850e-47 |
| Msa0282880 | Msa1298440 | -0.811224 | 7.790390e-51 | -8.615850e-47 |
| Msa0288280 | Msa1298440 | -0.818180 | 2.241856e-52 | -8.615850e-47 |
| Msa0313680 | Msa1298440 | 0.854366 | 1.290899e-61 | -8.615850e-47 |
| Msa0321180 | Msa1298440 | -0.804259 | 2.353717e-49 | -8.615850e-47 |
| Msa0321200 | Msa1298440 | -0.807167 | 5.768328e-50 | -8.615850e-47 |
| Msa1115760 | Msa1298440 | 0.826763 | 2.269341e-54 | -8.615850e-47 |
| Msa1129130 | Msa1298440 | -0.811694 | 6.159839e-51 | -8.615850e-47 |
| Msa1129470 | Msa1298440 | -0.820052 | 8.408324e-53 | -8.615850e-47 |
| Msa1151970 | Msa1298440 | -0.803854 | 2.857551e-49 | -8.615850e-47 |
| Msa1157200 | Msa1298440 | 0.822309 | 2.538593e-53 | -8.615850e-47 |
| Msa1164670 | Msa1298440 | 0.832784 | 7.757548e-56 | -8.615850e-47 |
| Msa1166520 | Msa1298440 | -0.806391 | 8.414541e-50 | -8.615850e-47 |
| Msa1171720 | Msa1298440 | 0.814089 | 1.839782e-51 | -8.615850e-47 |
| Msa1174450 | Msa1298440 | 0.802967 | 4.364093e-49 | -8.615850e-47 |
| Msa1177360 | Msa1298440 | -0.802322 | 5.928561e-49 | -8.615850e-47 |
| Msa1186010 | Msa1298440 | -0.807823 | 4.186778e-50 | -8.615850e-47 |
| Msa1187160 | Msa1298440 | 0.800994 | 1.109654e-48 | -8.615850e-47 |
| Msa1192790 | Msa1298440 | -0.800710 | 1.268709e-48 | -8.615850e-47 |
| Msa1203090 | Msa1298440 | -0.812500 | 4.110105e-51 | -8.615850e-47 |
| Msa1203210 | Msa1298440 | -0.808887 | 2.482978e-50 | -8.615850e-47 |
| Msa1207000 | Msa1298440 | 0.865202 | 7.008426e-65 | -8.615850e-47 |
| Msa1207090 | Msa1298440 | 0.856923 | 2.316187e-62 | -8.615850e-47 |
| Msa1223600 | Msa1298440 | -0.819622 | 1.054342e-52 | -8.615850e-47 |
| Msa0484240 | Msa1298440 | 0.811371 | 7.238937e-51 | -8.615850e-47 |
| Msa0498320 | Msa1298440 | -0.802140 | 6.462257e-49 | -8.615850e-47 |
| Msa0509420 | Msa1298440 | 0.811598 | 6.462848e-51 | -8.615850e-47 |
| Msa0511280 | Msa1298440 | 0.826856 | 2.156403e-54 | -8.615850e-47 |
| Msa0511380 | Msa1298440 | 0.816807 | 4.572407e-52 | -8.615850e-47 |
| Msa0513500 | Msa1298440 | -0.803886 | 2.814779e-49 | -8.615850e-47 |
| Msa0513670 | Msa1298440 | 0.820422 | 6.918744e-53 | -8.615850e-47 |
| Msa0522830 | Msa1298440 | -0.802612 | 5.166297e-49 | -8.615850e-47 |
| Msa0523400 | Msa1298440 | -0.800047 | 1.730681e-48 | -8.615850e-47 |
| Msa0532910 | Msa1298440 | -0.808927 | 2.435387e-50 | -8.615850e-47 |
| Msa0550760 | Msa1298440 | -0.809185 | 2.143670e-50 | -8.615850e-47 |
| Msa0553940 | Msa1298440 | -0.814226 | 1.715757e-51 | -8.615850e-47 |
| Msa0569290 | Msa1298440 | -0.803218 | 3.872210e-49 | -8.615850e-47 |
| Msa0587060 | Msa1298440 | -0.828577 | 8.323368e-55 | -8.615850e-47 |
| Msa0592020 | Msa1298440 | 0.810351 | 1.203601e-50 | -8.615850e-47 |
| Msa0597300 | Msa1298440 | -0.818050 | 2.399601e-52 | -8.615850e-47 |
| Msa0854860 | Msa1298440 | 0.812125 | 4.962345e-51 | -8.615850e-47 |
| Msa0862750 | Msa1298440 | -0.818048 | 2.402516e-52 | -8.615850e-47 |
| Msa0863780 | Msa1298440 | -0.833952 | 3.968622e-56 | -8.615850e-47 |
| Msa0865830 | Msa1298440 | 0.808684 | 2.744931e-50 | -8.615850e-47 |
| Msa0875130 | Msa1298440 | -0.825768 | 3.914611e-54 | -8.615850e-47 |
| Msa0882340 | Msa1298440 | -0.806663 | 7.374552e-50 | -8.615850e-47 |
| Msa0882360 | Msa1298440 | 0.808787 | 2.608046e-50 | -8.615850e-47 |
| Msa0894580 | Msa1298440 | -0.800167 | 1.636398e-48 | -8.615850e-47 |
| Msa0896990 | Msa1298440 | 0.805986 | 1.023971e-49 | -8.615850e-47 |
| Msa0902810 | Msa1298440 | -0.809719 | 1.646867e-50 | -8.615850e-47 |
| Msa0917630 | Msa1298440 | -0.802491 | 5.472013e-49 | -8.615850e-47 |
| Msa0933050 | Msa1298440 | -0.829031 | 6.460496e-55 | -8.615850e-47 |
| Msa0946570 | Msa1298440 | -0.801526 | 8.636091e-49 | -8.615850e-47 |
| Msa0947420 | Msa1298440 | 0.828247 | 9.996793e-55 | -8.615850e-47 |
| Msa0947520 | Msa1298440 | 0.814013 | 1.911851e-51 | -8.615850e-47 |
| Msa0970940 | Msa1298440 | -0.812380 | 4.364633e-51 | -8.615850e-47 |
| Msa0976950 | Msa1298440 | -0.830827 | 2.358585e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1298440 | MtrunA17_Chr4g0057571 | 87.500 | 432 | 26 | 3 | 1 | 404 | 1 | 432 | 0.0 | 715 |
| Msa1298440 | MtrunA17_Chr5g0416121 | 32.099 | 405 | 211 | 8 | 47 | 392 | 40 | 439 | 8.42e-64 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1298440 | AT3G48530.1 | 63.415 | 410 | 113 | 5 | 24 | 404 | 23 | 424 | 8.36e-180 | 507 |
| Msa1298440 | AT1G69800.1 | 32.754 | 403 | 208 | 5 | 45 | 388 | 35 | 433 | 6.49e-61 | 204 |
| Msa1298440 | AT1G69800.2 | 33.002 | 403 | 207 | 6 | 45 | 388 | 64 | 462 | 1.67e-60 | 203 |
| Msa1298440 | AT1G69800.3 | 33.459 | 266 | 147 | 1 | 45 | 280 | 35 | 300 | 5.13e-43 | 154 |
Find 111 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAACCCCACGGCTATTT+TGG | 0.161714 | 8_3:+59269747 | Msa1298440:CDS |
| GGATCTGCAGCGACAACTTC+TGG | 0.254340 | 8_3:+59268436 | Msa1298440:CDS |
| CTCATCCCAAGTTTGGCTTC+TGG | 0.255910 | 8_3:-59267425 | None:intergenic |
| TCATCCCAAGTTTGGCTTCT+GGG | 0.256233 | 8_3:-59267424 | None:intergenic |
| GGATGAGAGTTGAAGATCTA+TGG | 0.266856 | 8_3:+59267441 | Msa1298440:CDS |
| TCAAAGTTTGACAGAACTTA+TGG | 0.274031 | 8_3:-59270037 | None:intergenic |
| ATGGGCTCCGTTTCTTGCTT+TGG | 0.280669 | 8_3:+59268633 | Msa1298440:CDS |
| TTCAACTCTCATCCCAAGTT+TGG | 0.288163 | 8_3:-59267432 | None:intergenic |
| TTAGTGTGATTAGTCCTTCA+AGG | 0.332347 | 8_3:-59269701 | None:intergenic |
| ACTTCAATGGTTCGAAAGTT+GGG | 0.335155 | 8_3:+59268801 | Msa1298440:CDS |
| GAGAAAAGAAGAGGGAATAA+TGG | 0.336001 | 8_3:+59267370 | Msa1298440:CDS |
| CAAGCATTAAGTTTGTCATT+AGG | 0.345513 | 8_3:-59267488 | None:intergenic |
| TCTTTCCGCTAGTCATAATA+AGG | 0.356461 | 8_3:-59270096 | None:intergenic |
| CACACCTTGATGATCTGTTT+TGG | 0.359578 | 8_3:-59268865 | None:intergenic |
| CAAGCTTACTTTACTTGAAA+GGG | 0.360246 | 8_3:-59269029 | None:intergenic |
| AAACAGGTTCGAGATATTTC+AGG | 0.361042 | 8_3:+59268601 | Msa1298440:intron |
| TTATTATGGGACAATGTGTT+AGG | 0.367006 | 8_3:+59267262 | Msa1298440:five_prime_UTR |
| TTGACAAAGAGCAAATTCAT+AGG | 0.378131 | 8_3:+59269652 | Msa1298440:CDS |
| ATCGGAATAGTTGAGTTTGC+TGG | 0.385140 | 8_3:+59267962 | Msa1298440:CDS |
| TCAATCCAACTAGCATCTTC+AGG | 0.389432 | 8_3:-59267932 | None:intergenic |
| AGTTTGGCTTCTGGGCTCCT+TGG | 0.394246 | 8_3:-59267416 | None:intergenic |
| ATTCTAACATTAGTTAAAAC+AGG | 0.399857 | 8_3:-59269982 | None:intergenic |
| GTGAATTCATTACATGCAAA+AGG | 0.403501 | 8_3:+59269598 | Msa1298440:CDS |
| GACTTCAATGGTTCGAAAGT+TGG | 0.404591 | 8_3:+59268800 | Msa1298440:CDS |
| GGCAAAGGAAAAGCAGAAAC+AGG | 0.426999 | 8_3:-59267524 | None:intergenic |
| TAATGAATTCACTTGACATT+GGG | 0.434316 | 8_3:-59269587 | None:intergenic |
| AGTTTGCTGGAATTGTTGTA+TGG | 0.438748 | 8_3:+59267975 | Msa1298440:CDS |
| GGCTGAAGCTGTGAAAATAT+TGG | 0.439718 | 8_3:+59267865 | Msa1298440:CDS |
| GTTGGAGTGGATGGACTCCT+AGG | 0.442102 | 8_3:-59268343 | None:intergenic |
| AGGAGCCCAGAAGCCAAACT+TGG | 0.447648 | 8_3:+59267419 | Msa1298440:CDS |
| TTGGAGTGGATGGACTCCTA+GGG | 0.452562 | 8_3:-59268342 | None:intergenic |
| TCCCGCTACCTGCTAATAGC+AGG | 0.455291 | 8_3:+59269790 | Msa1298440:CDS |
| GCTCGAGAACTCGAAGCCTT+AGG | 0.456172 | 8_3:+59268409 | Msa1298440:CDS |
| ACAAGCTTACTTTACTTGAA+AGG | 0.464602 | 8_3:-59269030 | None:intergenic |
| CTTGCACTGGTTGGAGTGGA+TGG | 0.469031 | 8_3:-59268352 | None:intergenic |
| CAGAATGTGCCGGACTTCAA+TGG | 0.469578 | 8_3:+59268788 | Msa1298440:CDS |
| AATAAAATCAGATGCTACCT+TGG | 0.469606 | 8_3:+59267844 | Msa1298440:CDS |
| CAATGTGTTAGGAGTAGTAA+AGG | 0.471470 | 8_3:+59267273 | Msa1298440:five_prime_UTR |
| GACCTCCGTTAGAAGCTACT+TGG | 0.479934 | 8_3:+59269545 | Msa1298440:CDS |
| AGTAGCTTCTAACGGAGGTC+AGG | 0.486459 | 8_3:-59269542 | None:intergenic |
| GAGTGTTCCTGTGGTAGACT+TGG | 0.493238 | 8_3:+59268711 | Msa1298440:CDS |
| GCTATTGCAGCCGCAGCAAA+CGG | 0.494235 | 8_3:+59268376 | Msa1298440:CDS |
| GAACTCGAAGCCTTAGGCCT+CGG | 0.497616 | 8_3:+59268415 | Msa1298440:CDS |
| GACGATGATGGGAACCTTGA+AGG | 0.502311 | 8_3:+59269687 | Msa1298440:CDS |
| CGCTGCAGATCCGAGGCCTA+AGG | 0.503192 | 8_3:-59268425 | None:intergenic |
| GTCTATGTTGTGGACGATGA+TGG | 0.505650 | 8_3:+59269675 | Msa1298440:CDS |
| GCAATAGCACTTGCACTGGT+TGG | 0.511188 | 8_3:-59268361 | None:intergenic |
| TGTTAAACCCTGCTATTAGC+AGG | 0.522009 | 8_3:-59269798 | None:intergenic |
| GGTGCATCAACATCCACAAC+AGG | 0.523558 | 8_3:-59267911 | None:intergenic |
| ACCAACATCAGATAGTTCCT+TGG | 0.525523 | 8_3:-59268827 | None:intergenic |
| ACCCGCCGTGATTCATATGT+TGG | 0.528785 | 8_3:+59268765 | Msa1298440:CDS |
| CCCTGCTATTAGCAGGTAGC+GGG | 0.529342 | 8_3:-59269791 | None:intergenic |
| AACAGGTTCGAGATATTTCA+GGG | 0.530914 | 8_3:+59268602 | Msa1298440:intron |
| ATGCACCTGAAGATGCTAGT+TGG | 0.531504 | 8_3:+59267927 | Msa1298440:CDS |
| TGAATTCATTACATGCAAAA+GGG | 0.536868 | 8_3:+59269599 | Msa1298440:CDS |
| CCTGTGGTAGACTTGGGTGC+TGG | 0.537100 | 8_3:+59268718 | Msa1298440:CDS |
| CAGGTTGAAGATGTGTATCT+AGG | 0.549376 | 8_3:+59269922 | Msa1298440:three_prime_UTR |
| ACTTTCGAACCATTGAAGTC+CGG | 0.551209 | 8_3:-59268797 | None:intergenic |
| GTAATGAATTCACTTGACAT+TGG | 0.553550 | 8_3:-59269588 | None:intergenic |
| GATGAGAGTTGAAGATCTAT+GGG | 0.553732 | 8_3:+59267442 | Msa1298440:CDS |
| CCCGCTACCTGCTAATAGCA+GGG | 0.555138 | 8_3:+59269791 | Msa1298440:CDS |
| GATCTCTCCAAAGCAAGAAA+CGG | 0.557531 | 8_3:-59268640 | None:intergenic |
| CTTCTCCAAGTAGCTTCTAA+CGG | 0.558499 | 8_3:-59269550 | None:intergenic |
| TGACAGAACTATTACAGTGA+AGG | 0.559685 | 8_3:+59269515 | Msa1298440:intron |
| GTGGATGGACTCCTAGGGGA+TGG | 0.565217 | 8_3:-59268337 | None:intergenic |
| AAGCTTACTTTACTTGAAAG+GGG | 0.565513 | 8_3:-59269028 | None:intergenic |
| AATGTGTTAGGAGTAGTAAA+GGG | 0.569895 | 8_3:+59267274 | Msa1298440:five_prime_UTR |
| ACCAAGGAACTATCTGATGT+TGG | 0.572252 | 8_3:+59268826 | Msa1298440:CDS |
| CATATGTTGGCAGAATGTGC+CGG | 0.573538 | 8_3:+59268778 | Msa1298440:CDS |
| GGCTGCAATAGCACTTGCAC+TGG | 0.573713 | 8_3:-59268365 | None:intergenic |
| TATTCTGAGTGCACCTGTTG+TGG | 0.573842 | 8_3:+59267898 | Msa1298440:CDS |
| CTTAGAAAGCAGCAAGAGCA+TGG | 0.576526 | 8_3:-59268677 | None:intergenic |
| ACCCTGCTATTAGCAGGTAG+CGG | 0.577215 | 8_3:-59269792 | None:intergenic |
| CACAGAGAGAGAAAAGAAGA+GGG | 0.578839 | 8_3:+59267362 | Msa1298440:CDS |
| ATATTTCAGGGACATTCCGA+TGG | 0.579686 | 8_3:+59268614 | Msa1298440:CDS |
| AATTCATAGGGTCTATGTTG+TGG | 0.580570 | 8_3:+59269665 | Msa1298440:CDS |
| CTTCAATGGTTCGAAAGTTG+GGG | 0.582143 | 8_3:+59268802 | Msa1298440:CDS |
| ACACAGAGAGAGAAAAGAAG+AGG | 0.584820 | 8_3:+59267361 | Msa1298440:CDS |
| TGACAAAGAGCAAATTCATA+GGG | 0.586419 | 8_3:+59269653 | Msa1298440:CDS |
| GAAATCACCAAAATAGCCGT+GGG | 0.590135 | 8_3:-59269754 | None:intergenic |
| GATGGACTCCTAGGGGATGG+AGG | 0.592826 | 8_3:-59268334 | None:intergenic |
| GATCTTGATGAACTTGACAA+TGG | 0.594417 | 8_3:+59269054 | Msa1298440:CDS |
| GGAGCCCAGAAGCCAAACTT+GGG | 0.598020 | 8_3:+59267420 | Msa1298440:CDS |
| AGAAATCACCAAAATAGCCG+TGG | 0.598829 | 8_3:-59269755 | None:intergenic |
| AGCACTTGCACTGGTTGGAG+TGG | 0.599023 | 8_3:-59268356 | None:intergenic |
| GTTCACCTTATTATGACTAG+CGG | 0.600070 | 8_3:+59270091 | Msa1298440:three_prime_UTR |
| GCCAACATATGAATCACGGC+GGG | 0.600876 | 8_3:-59268766 | None:intergenic |
| AGTCTGAACCTCCATCCCCT+AGG | 0.601038 | 8_3:+59268326 | Msa1298440:intron |
| AGAAGAGGGAATAATGGCAA+TGG | 0.605880 | 8_3:+59267376 | Msa1298440:CDS |
| TCTATGTTGTGGACGATGAT+GGG | 0.613189 | 8_3:+59269676 | Msa1298440:CDS |
| AAGCAAGAAACGGAGCCCAT+CGG | 0.613620 | 8_3:-59268630 | None:intergenic |
| AGATCTATGGGATGTTCAAG+AGG | 0.614406 | 8_3:+59267454 | Msa1298440:CDS |
| CACTAAGAGATATCATCTCA+AGG | 0.615021 | 8_3:+59269718 | Msa1298440:CDS |
| TTCTGCCAACATATGAATCA+CGG | 0.617203 | 8_3:-59268770 | None:intergenic |
| AGTGTTCCTGTGGTAGACTT+GGG | 0.619646 | 8_3:+59268712 | Msa1298440:CDS |
| GTTCGAAAGTTGGGGAACCA+AGG | 0.622320 | 8_3:+59268810 | Msa1298440:CDS |
| CTACAATGAGAGAGATGCCA+AGG | 0.622743 | 8_3:+59267399 | Msa1298440:CDS |
| CCAGCACCCAAGTCTACCAC+AGG | 0.626540 | 8_3:-59268718 | None:intergenic |
| AAGTTGTCGCTGCAGATCCG+AGG | 0.626836 | 8_3:-59268432 | None:intergenic |
| AGTTGGATTGATAGATACAT+CGG | 0.633207 | 8_3:+59267944 | Msa1298440:CDS |
| TATTTCAGGGACATTCCGAT+GGG | 0.633257 | 8_3:+59268615 | Msa1298440:CDS |
| AAAAGTATTTCCGTTTGCTG+CGG | 0.635232 | 8_3:-59268386 | None:intergenic |
| CAAAATGAAGAGTGTTCCTG+TGG | 0.635403 | 8_3:+59268702 | Msa1298440:CDS |
| TGGAGTGGATGGACTCCTAG+GGG | 0.642969 | 8_3:-59268341 | None:intergenic |
| GACGCCAAAACAGATCATCA+AGG | 0.655091 | 8_3:+59268861 | Msa1298440:CDS |
| TGAACTTTATAAGAACACCA+AGG | 0.657415 | 8_3:+59268486 | Msa1298440:CDS |
| ATAGCAGGGTTTAACAGACA+TGG | 0.671919 | 8_3:+59269805 | Msa1298440:exon |
| CTCCAAGTAGCTTCTAACGG+AGG | 0.681992 | 8_3:-59269547 | None:intergenic |
| AGGCTAGTACATGAACCCCA+CGG | 0.706623 | 8_3:+59269738 | Msa1298440:CDS |
| TGCCAACATATGAATCACGG+CGG | 0.717560 | 8_3:-59268767 | None:intergenic |
| AAATCACCAAAATAGCCGTG+GGG | 0.760400 | 8_3:-59269753 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTCAGTTTATTATTAT+GGG | + | chr8_3:59267249-59267268 | Msa1298440:five_prime_UTR | 10.0% |
| !!! | TTAATATATGTACTTTTTGT+TGG | + | chr8_3:59268178-59268197 | Msa1298440:intron | 15.0% |
| !! | AAAAATATGTATTTATCTTC+AGG | + | chr8_3:59269903-59269922 | Msa1298440:three_prime_UTR | 15.0% |
| !! | AAAAAGACATAAACCATAAA+AGG | - | chr8_3:59267773-59267792 | None:intergenic | 20.0% |
| !!! | TTTATGGTTTATGTCTTTTT+TGG | + | chr8_3:59267773-59267792 | Msa1298440:intron | 20.0% |
| !!! | TTATGGTTTATGTCTTTTTT+GGG | + | chr8_3:59267774-59267793 | Msa1298440:intron | 20.0% |
| !! | TATAATCATGATAGATTTCT+GGG | - | chr8_3:59269239-59269258 | None:intergenic | 20.0% |
| !!! | TTTTTGAAATAATTCTTCAG+AGG | + | chr8_3:59269873-59269892 | Msa1298440:three_prime_UTR | 20.0% |
| !! | ATTCTAACATTAGTTAAAAC+AGG | - | chr8_3:59269985-59270004 | None:intergenic | 20.0% |
| !!! | TGTTTTAACTAATGTTAGAA+TGG | + | chr8_3:59269984-59270003 | Msa1298440:three_prime_UTR | 20.0% |
| !!! | GTTTTAACTAATGTTAGAAT+GGG | + | chr8_3:59269985-59270004 | Msa1298440:three_prime_UTR | 20.0% |
| ! | TCACTTTCAGAATAAAAATG+AGG | + | chr8_3:59268045-59268064 | Msa1298440:intron | 25.0% |
| ! | AAAATGAGGAAAAGATCAAA+AGG | + | chr8_3:59268059-59268078 | Msa1298440:intron | 25.0% |
| ! | AGAAGGATGAATTTAATACA+TGG | + | chr8_3:59268202-59268221 | Msa1298440:intron | 25.0% |
| ! | ACACACATTTAAGAAATGTA+GGG | - | chr8_3:59268976-59268995 | None:intergenic | 25.0% |
| !! | TGGATTATTTCATTCTTTTC+AGG | + | chr8_3:59269074-59269093 | Msa1298440:CDS | 25.0% |
| ! | ATAATCATGATAGATTTCTG+GGG | - | chr8_3:59269238-59269257 | None:intergenic | 25.0% |
| ! | CTATAATCATGATAGATTTC+TGG | - | chr8_3:59269240-59269259 | None:intergenic | 25.0% |
| ! | CAGAAATCTATCATGATTAT+AGG | + | chr8_3:59269238-59269257 | Msa1298440:intron | 25.0% |
| ! | CTGAGAAATGTTGTTAAATA+TGG | + | chr8_3:59269320-59269339 | Msa1298440:intron | 25.0% |
| ! | TTTCATTACTTCATACTCAT+TGG | + | chr8_3:59269480-59269499 | Msa1298440:intron | 25.0% |
| ! | TAATGAATTCACTTGACATT+GGG | - | chr8_3:59269590-59269609 | None:intergenic | 25.0% |
| ! | TGAATTCATTACATGCAAAA+GGG | + | chr8_3:59269599-59269618 | Msa1298440:CDS | 25.0% |
| !!! | TATTTTGGTGATTTCTTTGA+TGG | + | chr8_3:59269762-59269781 | Msa1298440:CDS | 25.0% |
| !! | CTTTTATGTACTGTAAATTC+TGG | + | chr8_3:59270009-59270028 | Msa1298440:three_prime_UTR | 25.0% |
| TTATTATGGGACAATGTGTT+AGG | + | chr8_3:59267262-59267281 | Msa1298440:five_prime_UTR | 30.0% | |
| AATGTGTTAGGAGTAGTAAA+GGG | + | chr8_3:59267274-59267293 | Msa1298440:five_prime_UTR | 30.0% | |
| CAAGCATTAAGTTTGTCATT+AGG | - | chr8_3:59267491-59267510 | None:intergenic | 30.0% | |
| ! | CATGCACATAATTTTCATCT+GGG | - | chr8_3:59267634-59267653 | None:intergenic | 30.0% |
| ! | ACATGCACATAATTTTCATC+TGG | - | chr8_3:59267635-59267654 | None:intergenic | 30.0% |
| ACGATAGTTTATCAGAATCA+TGG | + | chr8_3:59267663-59267682 | Msa1298440:intron | 30.0% | |
| AATAAAATCAGATGCTACCT+TGG | + | chr8_3:59267844-59267863 | Msa1298440:CDS | 30.0% | |
| AGTTGGATTGATAGATACAT+CGG | + | chr8_3:59267944-59267963 | Msa1298440:CDS | 30.0% | |
| !! | ATGTACTTTTTGTTGGTAGA+AGG | + | chr8_3:59268185-59268204 | Msa1298440:intron | 30.0% |
| GAAAATCACTTCAATAGAAC+AGG | - | chr8_3:59268259-59268278 | None:intergenic | 30.0% | |
| ! | AGCTAATGTGATAATGTTGT+TGG | + | chr8_3:59268302-59268321 | Msa1298440:intron | 30.0% |
| TGAACTTTATAAGAACACCA+AGG | + | chr8_3:59268486-59268505 | Msa1298440:CDS | 30.0% | |
| AATACAAACTCATTAGTAGC+TGG | - | chr8_3:59268553-59268572 | None:intergenic | 30.0% | |
| CACACACATTTAAGAAATGT+AGG | - | chr8_3:59268977-59268996 | None:intergenic | 30.0% | |
| CTTAAATGTGTGTGCATATA+TGG | + | chr8_3:59268983-59269002 | Msa1298440:intron | 30.0% | |
| AAGCTTACTTTACTTGAAAG+GGG | - | chr8_3:59269031-59269050 | None:intergenic | 30.0% | |
| CAAGCTTACTTTACTTGAAA+GGG | - | chr8_3:59269032-59269051 | None:intergenic | 30.0% | |
| ACAAGCTTACTTTACTTGAA+AGG | - | chr8_3:59269033-59269052 | None:intergenic | 30.0% | |
| !!! | TCATTCTTTTCAGGTTTATG+AGG | + | chr8_3:59269083-59269102 | Msa1298440:intron | 30.0% |
| TCATCTCTTTAAATGCTTGA+AGG | - | chr8_3:59269119-59269138 | None:intergenic | 30.0% | |
| TTCAAGCATTTAAAGAGATG+AGG | + | chr8_3:59269118-59269137 | Msa1298440:intron | 30.0% | |
| TTAAAGAGATGAGGAAAAAG+AGG | + | chr8_3:59269127-59269146 | Msa1298440:intron | 30.0% | |
| TAAAGAGATGAGGAAAAAGA+GGG | + | chr8_3:59269128-59269147 | Msa1298440:intron | 30.0% | |
| ! | ATCACAATTTAAAACCTCTG+TGG | - | chr8_3:59269271-59269290 | None:intergenic | 30.0% |
| AACATTTCTCAGCAAAATCA+AGG | - | chr8_3:59269312-59269331 | None:intergenic | 30.0% | |
| ! | CTAGACACAGTTCTAATAAA+AGG | - | chr8_3:59269415-59269434 | None:intergenic | 30.0% |
| GAAAAAAGATATCAGCAATG+TGG | - | chr8_3:59269439-59269458 | None:intergenic | 30.0% | |
| GTAATGAATTCACTTGACAT+TGG | - | chr8_3:59269591-59269610 | None:intergenic | 30.0% | |
| GTGAATTCATTACATGCAAA+AGG | + | chr8_3:59269598-59269617 | Msa1298440:CDS | 30.0% | |
| TTGACAAAGAGCAAATTCAT+AGG | + | chr8_3:59269652-59269671 | Msa1298440:CDS | 30.0% | |
| TGACAAAGAGCAAATTCATA+GGG | + | chr8_3:59269653-59269672 | Msa1298440:CDS | 30.0% | |
| TCAAAGTTTGACAGAACTTA+TGG | - | chr8_3:59270040-59270059 | None:intergenic | 30.0% | |
| CAATGTGTTAGGAGTAGTAA+AGG | + | chr8_3:59267273-59267292 | Msa1298440:five_prime_UTR | 35.0% | |
| GAGAAAAGAAGAGGGAATAA+TGG | + | chr8_3:59267370-59267389 | Msa1298440:CDS | 35.0% | |
| GATGAGAGTTGAAGATCTAT+GGG | + | chr8_3:59267442-59267461 | Msa1298440:CDS | 35.0% | |
| !!! | AAACTACCTTGGTTTTTAGC+AGG | - | chr8_3:59267548-59267567 | None:intergenic | 35.0% |
| AGATACACACTAAACTACCT+TGG | - | chr8_3:59267559-59267578 | None:intergenic | 35.0% | |
| ATTACTCACACATGCATGTT+TGG | - | chr8_3:59267728-59267747 | None:intergenic | 35.0% | |
| ! | ATTGTGTGTGTGTCCTTTTA+TGG | + | chr8_3:59267757-59267776 | Msa1298440:intron | 35.0% |
| !! | AGTTTGCTGGAATTGTTGTA+TGG | + | chr8_3:59267975-59267994 | Msa1298440:CDS | 35.0% |
| ! | TGTTGTATGGATTTTGCATC+AGG | + | chr8_3:59267988-59268007 | Msa1298440:CDS | 35.0% |
| !! | AAAAGTATTTCCGTTTGCTG+CGG | - | chr8_3:59268389-59268408 | None:intergenic | 35.0% |
| !!! | AACTTCTGGAAACTTTTTCG+AGG | + | chr8_3:59268450-59268469 | Msa1298440:CDS | 35.0% |
| TAGACATTGCAAAACAACCT+TGG | - | chr8_3:59268506-59268525 | None:intergenic | 35.0% | |
| !!! | TAGCTAACTTTTTCGCAAAC+AGG | + | chr8_3:59268585-59268604 | Msa1298440:intron | 35.0% |
| AAACAGGTTCGAGATATTTC+AGG | + | chr8_3:59268601-59268620 | Msa1298440:intron | 35.0% | |
| AACAGGTTCGAGATATTTCA+GGG | + | chr8_3:59268602-59268621 | Msa1298440:intron | 35.0% | |
| TTCTGCCAACATATGAATCA+CGG | - | chr8_3:59268773-59268792 | None:intergenic | 35.0% | |
| ACTTCAATGGTTCGAAAGTT+GGG | + | chr8_3:59268801-59268820 | Msa1298440:CDS | 35.0% | |
| TGCAGAATTCATACTTGACA+AGG | - | chr8_3:59268923-59268942 | None:intergenic | 35.0% | |
| GATCTTGATGAACTTGACAA+TGG | + | chr8_3:59269054-59269073 | Msa1298440:CDS | 35.0% | |
| TCTTTAAATGCTTGAAGGAC+TGG | - | chr8_3:59269114-59269133 | None:intergenic | 35.0% | |
| GTTGTTAAATATGGCTGATG+CGG | + | chr8_3:59269329-59269348 | Msa1298440:intron | 35.0% | |
| TGACAGAACTATTACAGTGA+AGG | + | chr8_3:59269515-59269534 | Msa1298440:intron | 35.0% | |
| AATTCATAGGGTCTATGTTG+TGG | + | chr8_3:59269665-59269684 | Msa1298440:CDS | 35.0% | |
| ! | TTAGTGTGATTAGTCCTTCA+AGG | - | chr8_3:59269704-59269723 | None:intergenic | 35.0% |
| CACTAAGAGATATCATCTCA+AGG | + | chr8_3:59269718-59269737 | Msa1298440:CDS | 35.0% | |
| GTTCACCTTATTATGACTAG+CGG | + | chr8_3:59270091-59270110 | Msa1298440:three_prime_UTR | 35.0% | |
| TCTTTCCGCTAGTCATAATA+AGG | - | chr8_3:59270099-59270118 | None:intergenic | 35.0% | |
| ACACAGAGAGAGAAAAGAAG+AGG | + | chr8_3:59267361-59267380 | Msa1298440:CDS | 40.0% | |
| CACAGAGAGAGAAAAGAAGA+GGG | + | chr8_3:59267362-59267381 | Msa1298440:CDS | 40.0% | |
| AGAAGAGGGAATAATGGCAA+TGG | + | chr8_3:59267376-59267395 | Msa1298440:CDS | 40.0% | |
| TTCAACTCTCATCCCAAGTT+TGG | - | chr8_3:59267435-59267454 | None:intergenic | 40.0% | |
| GGATGAGAGTTGAAGATCTA+TGG | + | chr8_3:59267441-59267460 | Msa1298440:CDS | 40.0% | |
| AGATCTATGGGATGTTCAAG+AGG | + | chr8_3:59267454-59267473 | Msa1298440:CDS | 40.0% | |
| !! | TGGTTGGTTTGTCAGAATCA+CGG | - | chr8_3:59267696-59267715 | None:intergenic | 40.0% |
| TCTGACAAACCAACCAATTG+TGG | + | chr8_3:59267700-59267719 | Msa1298440:intron | 40.0% | |
| TGTTTGGTACCACAATTGGT+TGG | - | chr8_3:59267712-59267731 | None:intergenic | 40.0% | |
| TGCATGTTTGGTACCACAAT+TGG | - | chr8_3:59267716-59267735 | None:intergenic | 40.0% | |
| CATGCATGTGTGAGTAATTG+AGG | + | chr8_3:59267730-59267749 | Msa1298440:intron | 40.0% | |
| ! | TATTTTCACAGCTTCAGCCA+AGG | - | chr8_3:59267864-59267883 | None:intergenic | 40.0% |
| GGCTGAAGCTGTGAAAATAT+TGG | + | chr8_3:59267865-59267884 | Msa1298440:CDS | 40.0% | |
| TCAATCCAACTAGCATCTTC+AGG | - | chr8_3:59267935-59267954 | None:intergenic | 40.0% | |
| ATCGGAATAGTTGAGTTTGC+TGG | + | chr8_3:59267962-59267981 | Msa1298440:CDS | 40.0% | |
| ATATTTCAGGGACATTCCGA+TGG | + | chr8_3:59268614-59268633 | Msa1298440:CDS | 40.0% | |
| TATTTCAGGGACATTCCGAT+GGG | + | chr8_3:59268615-59268634 | Msa1298440:CDS | 40.0% | |
| GATCTCTCCAAAGCAAGAAA+CGG | - | chr8_3:59268643-59268662 | None:intergenic | 40.0% | |
| !! | CAAAATGAAGAGTGTTCCTG+TGG | + | chr8_3:59268702-59268721 | Msa1298440:CDS | 40.0% |
| ACTTTCGAACCATTGAAGTC+CGG | - | chr8_3:59268800-59268819 | None:intergenic | 40.0% | |
| GACTTCAATGGTTCGAAAGT+TGG | + | chr8_3:59268800-59268819 | Msa1298440:CDS | 40.0% | |
| CTTCAATGGTTCGAAAGTTG+GGG | + | chr8_3:59268802-59268821 | Msa1298440:CDS | 40.0% | |
| ACCAAGGAACTATCTGATGT+TGG | + | chr8_3:59268826-59268845 | Msa1298440:CDS | 40.0% | |
| ACCAACATCAGATAGTTCCT+TGG | - | chr8_3:59268830-59268849 | None:intergenic | 40.0% | |
| !! | CACACCTTGATGATCTGTTT+TGG | - | chr8_3:59268868-59268887 | None:intergenic | 40.0% |
| GACAAGGTTCAATGCAATGA+GGG | - | chr8_3:59268907-59268926 | None:intergenic | 40.0% | |
| TGACAAGGTTCAATGCAATG+AGG | - | chr8_3:59268908-59268927 | None:intergenic | 40.0% | |
| TTATAGGTATGTCACCACAG+AGG | + | chr8_3:59269254-59269273 | Msa1298440:intron | 40.0% | |
| CTCAGCAAAATCAAGGATTG+TGG | - | chr8_3:59269305-59269324 | None:intergenic | 40.0% | |
| CTTCTCCAAGTAGCTTCTAA+CGG | - | chr8_3:59269553-59269572 | None:intergenic | 40.0% | |
| TCTATGTTGTGGACGATGAT+GGG | + | chr8_3:59269676-59269695 | Msa1298440:CDS | 40.0% | |
| AAATCACCAAAATAGCCGTG+GGG | - | chr8_3:59269756-59269775 | None:intergenic | 40.0% | |
| GAAATCACCAAAATAGCCGT+GGG | - | chr8_3:59269757-59269776 | None:intergenic | 40.0% | |
| AGAAATCACCAAAATAGCCG+TGG | - | chr8_3:59269758-59269777 | None:intergenic | 40.0% | |
| TGTTAAACCCTGCTATTAGC+AGG | - | chr8_3:59269801-59269820 | None:intergenic | 40.0% | |
| ATAGCAGGGTTTAACAGACA+TGG | + | chr8_3:59269805-59269824 | Msa1298440:exon | 40.0% | |
| ! | CAGGTTGAAGATGTGTATCT+AGG | + | chr8_3:59269922-59269941 | Msa1298440:three_prime_UTR | 40.0% |
| CTACAATGAGAGAGATGCCA+AGG | + | chr8_3:59267399-59267418 | Msa1298440:CDS | 45.0% | |
| ! | TCATCCCAAGTTTGGCTTCT+GGG | - | chr8_3:59267427-59267446 | None:intergenic | 45.0% |
| GGCAAAGGAAAAGCAGAAAC+AGG | - | chr8_3:59267527-59267546 | None:intergenic | 45.0% | |
| !!! | CCTTGGTTTTTAGCAGGCAA+AGG | - | chr8_3:59267542-59267561 | None:intergenic | 45.0% |
| CCTTTGCCTGCTAAAAACCA+AGG | + | chr8_3:59267539-59267558 | Msa1298440:CDS | 45.0% | |
| TATTCTGAGTGCACCTGTTG+TGG | + | chr8_3:59267898-59267917 | Msa1298440:CDS | 45.0% | |
| ATGCACCTGAAGATGCTAGT+TGG | + | chr8_3:59267927-59267946 | Msa1298440:CDS | 45.0% | |
| CTTAGAAAGCAGCAAGAGCA+TGG | - | chr8_3:59268680-59268699 | None:intergenic | 45.0% | |
| AGTGTTCCTGTGGTAGACTT+GGG | + | chr8_3:59268712-59268731 | Msa1298440:CDS | 45.0% | |
| TGCCAACATATGAATCACGG+CGG | - | chr8_3:59268770-59268789 | None:intergenic | 45.0% | |
| CATATGTTGGCAGAATGTGC+CGG | + | chr8_3:59268778-59268797 | Msa1298440:CDS | 45.0% | |
| !!! | ATCTGTTTTGGCGTCACAAG+GGG | - | chr8_3:59268856-59268875 | None:intergenic | 45.0% |
| !!! | GATCTGTTTTGGCGTCACAA+GGG | - | chr8_3:59268857-59268876 | None:intergenic | 45.0% |
| !!! | TGATCTGTTTTGGCGTCACA+AGG | - | chr8_3:59268858-59268877 | None:intergenic | 45.0% |
| GACGCCAAAACAGATCATCA+AGG | + | chr8_3:59268861-59268880 | Msa1298440:CDS | 45.0% | |
| GAGATGAGGAAAAAGAGGGT+TGG | + | chr8_3:59269132-59269151 | Msa1298440:intron | 45.0% | |
| ATGAGGAAAAAGAGGGTTGG+AGG | + | chr8_3:59269135-59269154 | Msa1298440:intron | 45.0% | |
| TGAGGAAAAAGAGGGTTGGA+GGG | + | chr8_3:59269136-59269155 | Msa1298440:intron | 45.0% | |
| GTGCCTGTAATCAAAAGAGG+TGG | + | chr8_3:59269159-59269178 | Msa1298440:intron | 45.0% | |
| !! | GTGCCACCTCTTTTGATTAC+AGG | - | chr8_3:59269165-59269184 | None:intergenic | 45.0% |
| AATCAAAAGAGGTGGCACCA+CGG | + | chr8_3:59269167-59269186 | Msa1298440:intron | 45.0% | |
| GCTTATATTACCAACTGCCG+TGG | - | chr8_3:59269187-59269206 | None:intergenic | 45.0% | |
| GATGTCTTTGACCGTGATTG+AGG | - | chr8_3:59269355-59269374 | None:intergenic | 45.0% | |
| GTCTATGTTGTGGACGATGA+TGG | + | chr8_3:59269675-59269694 | Msa1298440:CDS | 45.0% | |
| ! | CTCATCCCAAGTTTGGCTTC+TGG | - | chr8_3:59267428-59267447 | None:intergenic | 50.0% |
| GGTGCATCAACATCCACAAC+AGG | - | chr8_3:59267914-59267933 | None:intergenic | 50.0% | |
| ! | TTGGAGTGGATGGACTCCTA+GGG | - | chr8_3:59268345-59268364 | None:intergenic | 50.0% |
| ! | GCAATAGCACTTGCACTGGT+TGG | - | chr8_3:59268364-59268383 | None:intergenic | 50.0% |
| AAGCAAGAAACGGAGCCCAT+CGG | - | chr8_3:59268633-59268652 | None:intergenic | 50.0% | |
| ATGGGCTCCGTTTCTTGCTT+TGG | + | chr8_3:59268633-59268652 | Msa1298440:CDS | 50.0% | |
| GAGTGTTCCTGTGGTAGACT+TGG | + | chr8_3:59268711-59268730 | Msa1298440:CDS | 50.0% | |
| ACCCGCCGTGATTCATATGT+TGG | + | chr8_3:59268765-59268784 | Msa1298440:CDS | 50.0% | |
| GCCAACATATGAATCACGGC+GGG | - | chr8_3:59268769-59268788 | None:intergenic | 50.0% | |
| CAGAATGTGCCGGACTTCAA+TGG | + | chr8_3:59268788-59268807 | Msa1298440:CDS | 50.0% | |
| GTTCGAAAGTTGGGGAACCA+AGG | + | chr8_3:59268810-59268829 | Msa1298440:CDS | 50.0% | |
| GAGGAAAAAGAGGGTTGGAG+GGG | + | chr8_3:59269137-59269156 | Msa1298440:intron | 50.0% | |
| ! | GGGGTGCCTGTAATCAAAAG+AGG | + | chr8_3:59269156-59269175 | Msa1298440:intron | 50.0% |
| ACAATTCAGGTCGTGACGCA+AGG | - | chr8_3:59269383-59269402 | None:intergenic | 50.0% | |
| TTGCGTCACGACCTGAATTG+TGG | + | chr8_3:59269382-59269401 | Msa1298440:intron | 50.0% | |
| CACGACCTGAATTGTGGATG+CGG | + | chr8_3:59269388-59269407 | Msa1298440:intron | 50.0% | |
| AAGGTCCGCATCCACAATTC+AGG | - | chr8_3:59269396-59269415 | None:intergenic | 50.0% | |
| AGTAGCTTCTAACGGAGGTC+AGG | - | chr8_3:59269545-59269564 | None:intergenic | 50.0% | |
| GACCTCCGTTAGAAGCTACT+TGG | + | chr8_3:59269545-59269564 | Msa1298440:CDS | 50.0% | |
| CTCCAAGTAGCTTCTAACGG+AGG | - | chr8_3:59269550-59269569 | None:intergenic | 50.0% | |
| !! | GACGATGATGGGAACCTTGA+AGG | + | chr8_3:59269687-59269706 | Msa1298440:CDS | 50.0% |
| AGGCTAGTACATGAACCCCA+CGG | + | chr8_3:59269738-59269757 | Msa1298440:CDS | 50.0% | |
| ! | CATGAACCCCACGGCTATTT+TGG | + | chr8_3:59269747-59269766 | Msa1298440:CDS | 50.0% |
| ACCCTGCTATTAGCAGGTAG+CGG | - | chr8_3:59269795-59269814 | None:intergenic | 50.0% | |
| ! | AGTTTGGCTTCTGGGCTCCT+TGG | - | chr8_3:59267419-59267438 | None:intergenic | 55.0% |
| AGGAGCCCAGAAGCCAAACT+TGG | + | chr8_3:59267419-59267438 | Msa1298440:CDS | 55.0% | |
| GGAGCCCAGAAGCCAAACTT+GGG | + | chr8_3:59267420-59267439 | Msa1298440:CDS | 55.0% | |
| AGTCTGAACCTCCATCCCCT+AGG | + | chr8_3:59268326-59268345 | Msa1298440:intron | 55.0% | |
| ! | TGGAGTGGATGGACTCCTAG+GGG | - | chr8_3:59268344-59268363 | None:intergenic | 55.0% |
| ! | GTTGGAGTGGATGGACTCCT+AGG | - | chr8_3:59268346-59268365 | None:intergenic | 55.0% |
| !! | CTTGCACTGGTTGGAGTGGA+TGG | - | chr8_3:59268355-59268374 | None:intergenic | 55.0% |
| !! | AGCACTTGCACTGGTTGGAG+TGG | - | chr8_3:59268359-59268378 | None:intergenic | 55.0% |
| GGCTGCAATAGCACTTGCAC+TGG | - | chr8_3:59268368-59268387 | None:intergenic | 55.0% | |
| GCTATTGCAGCCGCAGCAAA+CGG | + | chr8_3:59268376-59268395 | Msa1298440:CDS | 55.0% | |
| GCTCGAGAACTCGAAGCCTT+AGG | + | chr8_3:59268409-59268428 | Msa1298440:CDS | 55.0% | |
| GAACTCGAAGCCTTAGGCCT+CGG | + | chr8_3:59268415-59268434 | Msa1298440:CDS | 55.0% | |
| AAGTTGTCGCTGCAGATCCG+AGG | - | chr8_3:59268435-59268454 | None:intergenic | 55.0% | |
| GGATCTGCAGCGACAACTTC+TGG | + | chr8_3:59268436-59268455 | Msa1298440:CDS | 55.0% | |
| TCCCGCTACCTGCTAATAGC+AGG | + | chr8_3:59269790-59269809 | Msa1298440:CDS | 55.0% | |
| CCCTGCTATTAGCAGGTAGC+GGG | - | chr8_3:59269794-59269813 | None:intergenic | 55.0% | |
| CCCGCTACCTGCTAATAGCA+GGG | + | chr8_3:59269791-59269810 | Msa1298440:CDS | 55.0% | |
| ! | GATGGACTCCTAGGGGATGG+AGG | - | chr8_3:59268337-59268356 | None:intergenic | 60.0% |
| ! | GTGGATGGACTCCTAGGGGA+TGG | - | chr8_3:59268340-59268359 | None:intergenic | 60.0% |
| CCAGCACCCAAGTCTACCAC+AGG | - | chr8_3:59268721-59268740 | None:intergenic | 60.0% | |
| CCTGTGGTAGACTTGGGTGC+TGG | + | chr8_3:59268718-59268737 | Msa1298440:CDS | 60.0% | |
| GGCTGATGCGGCCTCAATCA+CGG | + | chr8_3:59269341-59269360 | Msa1298440:intron | 60.0% | |
| CGCTGCAGATCCGAGGCCTA+AGG | - | chr8_3:59268428-59268447 | None:intergenic | 65.0% | |
| AGAGGTGGCACCACGGCAGT+TGG | + | chr8_3:59269174-59269193 | Msa1298440:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 59267249 | 59270127 | 59267249 | ID=Msa1298440;Name=Msa1298440 |
| chr8_3 | mRNA | 59267249 | 59270127 | 59267249 | ID=Msa1298440-mRNA-1;Parent=Msa1298440;Name=Msa1298440-mRNA-1;_AED=0.12;_eAED=0.12;_QI=104|0.6|0.83|1|0.6|0.83|6|309|404 |
| chr8_3 | exon | 59267249 | 59267560 | 59267249 | ID=Msa1298440-mRNA-1:exon:17072;Parent=Msa1298440-mRNA-1 |
| chr8_3 | exon | 59267837 | 59268009 | 59267837 | ID=Msa1298440-mRNA-1:exon:17073;Parent=Msa1298440-mRNA-1 |
| chr8_3 | exon | 59268328 | 59268507 | 59268328 | ID=Msa1298440-mRNA-1:exon:17074;Parent=Msa1298440-mRNA-1 |
| chr8_3 | exon | 59268607 | 59268882 | 59268607 | ID=Msa1298440-mRNA-1:exon:17075;Parent=Msa1298440-mRNA-1 |
| chr8_3 | exon | 59269016 | 59269095 | 59269016 | ID=Msa1298440-mRNA-1:exon:17076;Parent=Msa1298440-mRNA-1 |
| chr8_3 | exon | 59269521 | 59270127 | 59269521 | ID=Msa1298440-mRNA-1:exon:17077;Parent=Msa1298440-mRNA-1 |
| chr8_3 | five_prime_UTR | 59267249 | 59267352 | 59267249 | ID=Msa1298440-mRNA-1:five_prime_utr;Parent=Msa1298440-mRNA-1 |
| chr8_3 | CDS | 59267353 | 59267560 | 59267353 | ID=Msa1298440-mRNA-1:cds;Parent=Msa1298440-mRNA-1 |
| chr8_3 | CDS | 59267837 | 59268009 | 59267837 | ID=Msa1298440-mRNA-1:cds;Parent=Msa1298440-mRNA-1 |
| chr8_3 | CDS | 59268328 | 59268507 | 59268328 | ID=Msa1298440-mRNA-1:cds;Parent=Msa1298440-mRNA-1 |
| chr8_3 | CDS | 59268607 | 59268882 | 59268607 | ID=Msa1298440-mRNA-1:cds;Parent=Msa1298440-mRNA-1 |
| chr8_3 | CDS | 59269016 | 59269095 | 59269016 | ID=Msa1298440-mRNA-1:cds;Parent=Msa1298440-mRNA-1 |
| chr8_3 | CDS | 59269521 | 59269818 | 59269521 | ID=Msa1298440-mRNA-1:cds;Parent=Msa1298440-mRNA-1 |
| chr8_3 | three_prime_UTR | 59269819 | 59270127 | 59269819 | ID=Msa1298440-mRNA-1:three_prime_utr;Parent=Msa1298440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
