AlfalfaGEDB | Msa0015400

M. sativa cultivar zhongmu-4 / Msa0015400

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0015400	XP_004498498.1	91.837	49	4	0	7	55	182	230	1.84e-24	100

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015390	Msa0015400	0.808012	3.817675e-50	-8.615850e-47
Msa0015400	Msa0017510	0.814977	1.170385e-51	-8.615850e-47
Msa0015400	Msa0024550	0.802800	4.723061e-49	-8.615850e-47
Msa0015400	Msa0036920	0.809526	1.811213e-50	-8.615850e-47
Msa0015400	Msa0044260	0.803442	3.478553e-49	-8.615850e-47
Msa0015400	Msa0114060	0.812288	4.571352e-51	-8.615850e-47
Msa0015400	Msa0120400	0.811397	7.144537e-51	-8.615850e-47
Msa0015400	Msa0130970	0.813030	3.146413e-51	-8.615850e-47
Msa0015400	Msa0131770	0.860570	1.884068e-63	-8.615850e-47
Msa0015400	Msa0142220	0.815619	8.427251e-52	-8.615850e-47
Msa0015400	Msa0153910	0.816758	4.689438e-52	-8.615850e-47
Msa0015400	Msa0157290	0.815942	7.136409e-52	-8.615850e-47
Msa0015400	Msa0169860	0.805562	1.257406e-49	-8.615850e-47
Msa0015400	Msa0208090	0.804656	1.945325e-49	-8.615850e-47
Msa0015400	Msa0212990	0.806705	7.223509e-50	-8.615850e-47
Msa0015400	Msa0220580	0.812109	5.002760e-51	-8.615850e-47
Msa0015400	Msa0233300	0.814919	1.205421e-51	-8.615850e-47
Msa0015400	Msa0251320	0.838851	2.248949e-57	-8.615850e-47
Msa0015400	Msa0273100	0.859989	2.823877e-63	-8.615850e-47
Msa0015400	Msa0278110	0.805297	1.428601e-49	-8.615850e-47
Msa0015400	Msa0290870	0.830566	2.731975e-55	-8.615850e-47
Msa0015400	Msa0292930	0.818574	1.825364e-52	-8.615850e-47
Msa0015400	Msa0295770	0.800507	1.395087e-48	-8.615850e-47
Msa0015400	Msa0315200	0.801506	8.719177e-49	-8.615850e-47
Msa0015400	Msa0322360	0.816590	5.112621e-52	-8.615850e-47
Msa0015400	Msa0330340	0.800294	1.541764e-48	-8.615850e-47
Msa0015400	Msa0340450	0.803170	3.961860e-49	-8.615850e-47
Msa0015400	Msa0357340	0.801520	8.661904e-49	-8.615850e-47
Msa0015400	Msa0388960	0.823129	1.635387e-53	-8.615850e-47
Msa0015400	Msa0391430	0.802307	5.969566e-49	-8.615850e-47
Msa0015400	Msa0395790	0.817900	2.594058e-52	-8.615850e-47
Msa0015400	Msa0406120	0.833538	5.034670e-56	-8.615850e-47
Msa0015400	Msa0409690	0.810258	1.260452e-50	-8.615850e-47
Msa0015400	Msa0416650	0.803472	3.429569e-49	-8.615850e-47
Msa0015400	Msa0431690	0.808971	2.382850e-50	-8.615850e-47
Msa0015400	Msa0435390	0.809648	1.705952e-50	-8.615850e-47
Msa0015400	Msa0435400	0.802239	6.164707e-49	-8.615850e-47
Msa0015400	Msa0436800	0.802796	4.733188e-49	-8.615850e-47
Msa0015400	Msa0479340	0.813759	2.175604e-51	-8.615850e-47
Msa0015400	Msa0484650	0.801996	6.917432e-49	-8.615850e-47
Msa0015400	Msa0484780	0.803664	3.129398e-49	-8.615850e-47
Msa0015400	Msa0495330	0.820694	5.991960e-53	-8.615850e-47
Msa0015400	Msa0506450	0.809096	2.239929e-50	-8.615850e-47
Msa0015400	Msa0512750	0.810261	1.258764e-50	-8.615850e-47
Msa0015400	Msa0523460	0.805220	1.483260e-49	-8.615850e-47
Msa0015400	Msa0545200	0.818549	1.850205e-52	-8.615850e-47
Msa0015400	Msa0545210	0.801258	9.801583e-49	-8.615850e-47
Msa0015400	Msa0545700	0.806881	6.631778e-50	-8.615850e-47
Msa0015400	Msa0554050	0.805029	1.626009e-49	-8.615850e-47
Msa0015400	Msa0585230	0.813679	2.265860e-51	-8.615850e-47
Msa0015400	Msa0600700	0.818557	1.841650e-52	-8.615850e-47
Msa0015400	Msa0626090	0.802458	5.557290e-49	-8.615850e-47
Msa0015400	Msa0650630	0.811718	6.085267e-51	-8.615850e-47
Msa0015400	Msa0663240	0.804275	2.335725e-49	-8.615850e-47
Msa0015400	Msa0673460	0.806793	6.922175e-50	-8.615850e-47
Msa0015400	Msa0688270	0.803232	3.846651e-49	-8.615850e-47
Msa0015400	Msa0688480	0.813824	2.105248e-51	-8.615850e-47
Msa0015400	Msa0691010	0.804208	2.412581e-49	-8.615850e-47
Msa0015400	Msa0703120	0.808226	3.436652e-50	-8.615850e-47
Msa0015400	Msa0703780	0.820742	5.840791e-53	-8.615850e-47
Msa0015400	Msa0726140	0.809244	2.081982e-50	-8.615850e-47
Msa0015400	Msa0731940	0.826725	2.317502e-54	-8.615850e-47
Msa0015400	Msa0732540	0.805436	1.336044e-49	-8.615850e-47
Msa0015400	Msa0735170	0.823511	1.331931e-53	-8.615850e-47
Msa0015400	Msa0744170	-0.815131	1.081583e-51	-8.615850e-47
Msa0015400	Msa0760130	0.833589	4.889794e-56	-8.615850e-47
Msa0015400	Msa0762360	0.829039	6.433868e-55	-8.615850e-47
Msa0015400	Msa0766630	0.807412	5.119560e-50	-8.615850e-47
Msa0015400	Msa0768290	0.823259	1.524886e-53	-8.615850e-47
Msa0015400	Msa0768370	0.818496	1.902080e-52	-8.615850e-47
Msa0015400	Msa0784290	0.822720	2.037358e-53	-8.615850e-47
Msa0015400	Msa0784300	0.830489	2.854326e-55	-8.615850e-47
Msa0015400	Msa0800210	0.806502	7.973937e-50	-8.615850e-47
Msa0015400	Msa0810220	0.828882	7.021866e-55	-8.615850e-47
Msa0015400	Msa0832340	0.812326	4.484731e-51	-8.615850e-47
Msa0015400	Msa0833290	0.808830	2.553366e-50	-8.615850e-47
Msa0015400	Msa0833300	0.801919	7.173179e-49	-8.615850e-47
Msa0015400	Msa0842710	0.803259	3.797412e-49	-8.615850e-47
Msa0015400	Msa0844490	0.815401	9.421150e-52	-8.615850e-47
Msa0015400	Msa0848030	0.801031	1.090924e-48	-8.615850e-47
Msa0015400	Msa0857640	0.827122	1.862394e-54	-8.615850e-47
Msa0015400	Msa0864070	0.801160	1.026571e-48	-8.615850e-47
Msa0015400	Msa0880140	0.809383	1.944251e-50	-8.615850e-47
Msa0015400	Msa0885280	0.811308	7.469353e-51	-8.615850e-47
Msa0015400	Msa0885290	0.841699	4.055851e-58	-8.615850e-47
Msa0015400	Msa0895950	0.818011	2.448029e-52	-8.615850e-47
Msa0015400	Msa0899430	0.818741	1.673024e-52	-8.615850e-47
Msa0015400	Msa0899450	0.824158	9.390152e-54	-8.615850e-47
Msa0015400	Msa0907070	0.833238	5.980312e-56	-8.615850e-47
Msa0015400	Msa0909140	0.840676	7.532785e-58	-8.615850e-47
Msa0015400	Msa0922410	0.808840	2.542033e-50	-8.615850e-47
Msa0015400	Msa0924310	0.811614	6.409838e-51	-8.615850e-47
Msa0015400	Msa0927380	0.827838	1.253952e-54	-8.615850e-47
Msa0015400	Msa0935910	0.803278	3.763125e-49	-8.615850e-47
Msa0015400	Msa0954910	0.824569	7.517454e-54	-8.615850e-47
Msa0015400	Msa0958550	0.815514	8.892337e-52	-8.615850e-47
Msa0015400	Msa0964900	0.848482	5.960899e-60	-8.615850e-47
Msa0015400	Msa0967580	0.807655	4.546018e-50	-8.615850e-47
Msa0015400	Msa0969260	0.821263	4.431216e-53	-8.615850e-47
Msa0015400	Msa0969450	0.830504	2.829594e-55	-8.615850e-47
Msa0015400	Msa0969520	0.847609	1.038055e-59	-8.615850e-47
Msa0015400	Msa0975220	0.834972	2.200507e-56	-8.615850e-47
Msa0015400	Msa0990350	0.818749	1.665839e-52	-8.615850e-47
Msa0015400	Msa0999220	0.809149	2.182185e-50	-8.615850e-47
Msa0015400	Msa1014540	0.826804	2.218741e-54	-8.615850e-47
Msa0015400	Msa1015490	0.843033	1.796444e-58	-8.615850e-47
Msa0015400	Msa1019150	0.804833	1.787065e-49	-8.615850e-47
Msa0015400	Msa1028230	0.807473	4.969284e-50	-8.615850e-47
Msa0015400	Msa1052830	0.807979	3.879890e-50	-8.615850e-47
Msa0015400	Msa1065570	0.811868	5.646083e-51	-8.615850e-47
Msa0015400	Msa1075220	-0.820631	6.193194e-53	-8.615850e-47
Msa0015400	Msa1075540	0.805104	1.568038e-49	-8.615850e-47
Msa0015400	Msa1079430	0.800156	1.644801e-48	-8.615850e-47
Msa0015400	Msa1082500	0.817868	2.638201e-52	-8.615850e-47
Msa0015400	Msa1112300	0.830085	3.580684e-55	-8.615850e-47
Msa0015400	Msa1121480	0.812189	4.804392e-51	-8.615850e-47
Msa0015400	Msa1121490	0.858154	1.000640e-62	-8.615850e-47
Msa0015400	Msa1136090	0.814753	1.312295e-51	-8.615850e-47
Msa0015400	Msa1137570	0.817827	2.694873e-52	-8.615850e-47
Msa0015400	Msa1139000	-0.803260	3.794492e-49	-8.615850e-47
Msa0015400	Msa1162550	-0.822567	2.210649e-53	-8.615850e-47
Msa0015400	Msa1179770	0.803238	3.834563e-49	-8.615850e-47
Msa0015400	Msa1205020	0.833635	4.762536e-56	-8.615850e-47
Msa0015400	Msa1218000	0.814918	1.206011e-51	-8.615850e-47
Msa0015400	Msa1244250	0.815967	7.048552e-52	-8.615850e-47
Msa0015400	Msa1248370	0.800484	1.410501e-48	-8.615850e-47
Msa0015400	Msa1268880	0.814281	1.669084e-51	-8.615850e-47
Msa0015400	Msa1276890	0.801599	8.346628e-49	-8.615850e-47
Msa0015400	Msa1282580	-0.800864	1.179641e-48	-8.615850e-47
Msa0015400	Msa1283860	0.806686	7.293067e-50	-8.615850e-47
Msa0015400	Msa1284680	0.843900	1.053904e-58	-8.615850e-47
Msa0015400	Msa1297210	0.811114	8.230698e-51	-8.615850e-47
Msa0015400	Msa1306850	0.800776	1.229981e-48	-8.615850e-47
Msa0015400	Msa1313150	0.813567	2.397669e-51	-8.615850e-47
Msa0015400	Msa1322890	0.802964	4.369404e-49	-8.615850e-47
Msa0015400	Msa1331000	0.801243	9.871992e-49	-8.615850e-47
Msa0015400	Msa1353470	0.807749	4.342636e-50	-8.615850e-47
Msa0015400	Msa1359040	0.804162	2.465592e-49	-8.615850e-47
Msa0015400	Msa1360610	0.814911	1.210483e-51	-8.615850e-47
Msa0015400	Msa1366810	0.801833	7.471920e-49	-8.615850e-47
Msa0015400	Msa1372760	0.809442	1.888219e-50	-8.615850e-47
Msa0015400	Msa1403480	0.805153	1.531348e-49	-8.615850e-47
Msa0015400	Msa1411020	0.823982	1.032691e-53	-8.615850e-47
Msa0015400	Msa1420490	0.817499	3.194168e-52	-8.615850e-47
Msa0015400	Msa1423390	0.817821	2.702705e-52	-8.615850e-47
Msa0015400	Msa1423880	0.829578	4.760574e-55	-8.615850e-47
Msa0015400	Msa1424290	0.819593	1.070706e-52	-8.615850e-47
Msa0015400	Msa1427230	0.800985	1.114480e-48	-8.615850e-47
Msa0015400	Msa1434350	0.819926	8.987556e-53	-8.615850e-47
Msa0015400	Msa1439320	0.822116	2.814199e-53	-8.615850e-47
Msa0015400	Msa1440370	0.815976	7.013135e-52	-8.615850e-47
Msa0015400	Msa1440810	0.813238	2.831835e-51	-8.615850e-47
Msa0015400	Msa1460830	0.803876	2.827207e-49	-8.615850e-47
Msa0015400	Msa1464940	0.803342	3.648977e-49	-8.615850e-47
Msa0015400	Msa1466540	0.807576	4.724074e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0015400	MtrunA17_Chr1g0146701	91.667	48	4	0	7	54	185	232	1.36e-27	98.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0015400	AT2G40600.1	62.500	48	18	0	7	54	208	255	3.07e-18	74.7

Find 30 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTACCTCCTTAAAGTCATTT+TGG	0.176239	1_1:-24908909	None:intergenic
AGAATTCCAAAATGACTTTA+AGG	0.221106	1_1:+24908903	Msa0015400:CDS
TTTGGTGTTCATGTAGTTTC+AGG	0.251419	1_1:+24910294	Msa0015400:three_prime_UTR
ATAGATCTCATTTACTATTC+AGG	0.254813	1_1:-24910253	None:intergenic
TTATTAAAGTGGTGTGCTTT+AGG	0.291253	1_1:+24910325	Msa0015400:three_prime_UTR
AACCAAGTGTCATAAATATC+AGG	0.368979	1_1:-24909856	None:intergenic
ACATCATGGTTGGAAATTAA+CGG	0.400285	1_1:+24910156	Msa0015400:three_prime_UTR
CGCCTGATATTTATGACACT+TGG	0.402653	1_1:+24909854	Msa0015400:CDS
GACCCTGGTCTTCAATTCTC+TGG	0.421369	1_1:-24909931	None:intergenic
CAGGTCATATCTATACAATA+AGG	0.464179	1_1:-24910234	None:intergenic
TTAAAGAAACGATCATAAGT+AGG	0.478514	1_1:-24910030	None:intergenic
CCCTTTAAAACAATGACAAA+TGG	0.500856	1_1:-24910123	None:intergenic
TGACACTTGGTTAAATAAGT+CGG	0.512408	1_1:+24909867	Msa0015400:CDS
ACAGTAGCAGCTTCATCGTA+AGG	0.530371	1_1:-24908862	None:intergenic
TTCTCTGGACTGATAACTGA+AGG	0.531728	1_1:-24909916	None:intergenic
CTACAGCCTACACAAAACTT+TGG	0.535576	1_1:+24910276	Msa0015400:three_prime_UTR
TAAAGAAACGATCATAAGTA+GGG	0.550721	1_1:-24910029	None:intergenic
TGGAAAACACACATCATGGT+TGG	0.552162	1_1:+24910146	Msa0015400:three_prime_UTR
AAACACTGCAAACGAAATGC+AGG	0.574558	1_1:-24910191	None:intergenic
AGGGTGGAAAACACACATCA+TGG	0.577028	1_1:+24910142	Msa0015400:three_prime_UTR
TTACGATGAAGCTGCTACTG+TGG	0.587602	1_1:+24908864	Msa0015400:CDS
ATTACGACACATGTAGCATA+CGG	0.594987	1_1:+24910087	Msa0015400:three_prime_UTR
AGTCCAGAGAATTGAAGACC+AGG	0.609874	1_1:+24909928	Msa0015400:three_prime_UTR
CAGTAGCAGCTTCATCGTAA+GGG	0.614509	1_1:-24908861	None:intergenic
ATGTGTCGTAATAATTAGCA+AGG	0.614855	1_1:-24910076	None:intergenic
ATTCCAAAATGACTTTAAGG+AGG	0.619239	1_1:+24908906	Msa0015400:CDS
TCTCTGGACTGATAACTGAA+GGG	0.645193	1_1:-24909915	None:intergenic
TACACGAGTCAGAATGACCC+TGG	0.652317	1_1:-24909946	None:intergenic
GTCCAGAGAATTGAAGACCA+GGG	0.654380	1_1:+24909929	Msa0015400:three_prime_UTR
CAGGCGCGAAGAGAACAAAG+TGG	0.729429	1_1:-24909837	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTAGTATATTTCAAAAAAAA+AGG	+	chr1_1:24909774-24909793	Msa0015400:intron	10.0%
!!	TTAGTATATTTCAAAAAAAA+AGG	+	chr1_1:24909774-24909793	Msa0015400:intron	10.0%
!!	TCAATTGGAAATTTATAATT+TGG	-	chr1_1:24909080-24909099	None:intergenic	15.0%
!!!	TTTTTTTGAACAAATCAAAA+TGG	+	chr1_1:24909121-24909140	Msa0015400:intron	15.0%
!!!	GTAATTTTGCTTTTATTTTT+TGG	-	chr1_1:24909257-24909276	None:intergenic	15.0%
!!!	TTAATCGATTTTTTTTATGA+AGG	+	chr1_1:24909680-24909699	Msa0015400:intron	15.0%
!!!	TACATTTAAATTTTTGTTTC+AGG	+	chr1_1:24909813-24909832	Msa0015400:intron	15.0%
!!	TCAATTGGAAATTTATAATT+TGG	-	chr1_1:24909080-24909099	None:intergenic	15.0%
!!!	TTTTTTTGAACAAATCAAAA+TGG	+	chr1_1:24909121-24909140	Msa0015400:intron	15.0%
!!!	GTAATTTTGCTTTTATTTTT+TGG	-	chr1_1:24909257-24909276	None:intergenic	15.0%
!!!	TTAATCGATTTTTTTTATGA+AGG	+	chr1_1:24909680-24909699	Msa0015400:intron	15.0%
!!!	TACATTTAAATTTTTGTTTC+AGG	+	chr1_1:24909813-24909832	Msa0015400:intron	15.0%
!!	AATAAAGAAAATGGAGTAAA+TGG	-	chr1_1:24908944-24908963	None:intergenic	20.0%
!!!	TTTACTCCATTTTCTTTATT+TGG	+	chr1_1:24908944-24908963	Msa0015400:intron	20.0%
!!	TTGTGATATGAATAAATCAT+GGG	+	chr1_1:24908973-24908992	Msa0015400:intron	20.0%
!!	TTCCTTTAATTATTAGAAGT+AGG	+	chr1_1:24908996-24909015	Msa0015400:intron	20.0%
!!!	ATTTTGCTTTTATTTTTTGG+TGG	-	chr1_1:24909254-24909273	None:intergenic	20.0%
!!	CACTTTATTAGAAATCAAAA+AGG	-	chr1_1:24909286-24909305	None:intergenic	20.0%
!!	ATTTGGAAAATGACAAAAAT+TGG	+	chr1_1:24909406-24909425	Msa0015400:intron	20.0%
!!	TGATTTGATCAAAGAAATTA+AGG	+	chr1_1:24909500-24909519	Msa0015400:intron	20.0%
!!	GATTTGATCAAAGAAATTAA+GGG	+	chr1_1:24909501-24909520	Msa0015400:intron	20.0%
!!	ATTTGATCAAAGAAATTAAG+GGG	+	chr1_1:24909502-24909521	Msa0015400:intron	20.0%
!!	TATAGAAAGATCATCTTATT+AGG	-	chr1_1:24909731-24909750	None:intergenic	20.0%
!!	AATAAAGAAAATGGAGTAAA+TGG	-	chr1_1:24908944-24908963	None:intergenic	20.0%
!!!	TTTACTCCATTTTCTTTATT+TGG	+	chr1_1:24908944-24908963	Msa0015400:intron	20.0%
!!	TTGTGATATGAATAAATCAT+GGG	+	chr1_1:24908973-24908992	Msa0015400:intron	20.0%
!!	TTCCTTTAATTATTAGAAGT+AGG	+	chr1_1:24908996-24909015	Msa0015400:intron	20.0%
!!!	ATTTTGCTTTTATTTTTTGG+TGG	-	chr1_1:24909254-24909273	None:intergenic	20.0%
!!	CACTTTATTAGAAATCAAAA+AGG	-	chr1_1:24909286-24909305	None:intergenic	20.0%
!!	ATTTGGAAAATGACAAAAAT+TGG	+	chr1_1:24909406-24909425	Msa0015400:intron	20.0%
!!	TGATTTGATCAAAGAAATTA+AGG	+	chr1_1:24909500-24909519	Msa0015400:intron	20.0%
!!	GATTTGATCAAAGAAATTAA+GGG	+	chr1_1:24909501-24909520	Msa0015400:intron	20.0%
!!	ATTTGATCAAAGAAATTAAG+GGG	+	chr1_1:24909502-24909521	Msa0015400:intron	20.0%
!!	TATAGAAAGATCATCTTATT+AGG	-	chr1_1:24909731-24909750	None:intergenic	20.0%
!	AGAATTCCAAAATGACTTTA+AGG	+	chr1_1:24908903-24908922	Msa0015400:CDS	25.0%
!	CTCATACCAAATAAAGAAAA+TGG	-	chr1_1:24908953-24908972	None:intergenic	25.0%
!	GTTGTGATATGAATAAATCA+TGG	+	chr1_1:24908972-24908991	Msa0015400:intron	25.0%
!	GTCCTACTTCTAATAATTAA+AGG	-	chr1_1:24909001-24909020	None:intergenic	25.0%
!!!	ATCAAAGGTTGATAAATCAT+GGG	+	chr1_1:24909042-24909061	Msa0015400:intron	25.0%
!!	CACAAAAAGTACAAATTGTA+TGG	-	chr1_1:24909338-24909357	None:intergenic	25.0%
!!	TGGAATATTTGCAACTTTTT+GGG	-	chr1_1:24909456-24909475	None:intergenic	25.0%
!!	ATGGAATATTTGCAACTTTT+TGG	-	chr1_1:24909457-24909476	None:intergenic	25.0%
!	AAAGTTGCAAATATTCCATT+AGG	+	chr1_1:24909458-24909477	Msa0015400:intron	25.0%
!	ATCAAATATTCGACCAAATT+AGG	-	chr1_1:24909484-24909503	None:intergenic	25.0%
!	TTCATTGAACAACTCATTAA+AGG	+	chr1_1:24909539-24909558	Msa0015400:intron	25.0%
!	AGATGAAAAATTCAAAAGAC+AGG	+	chr1_1:24909585-24909604	Msa0015400:intron	25.0%
!	AAGGATATATAGAATTGATG+AGG	+	chr1_1:24909699-24909718	Msa0015400:intron	25.0%
!	TTTCTATAACTGAGGTTTAT+AGG	+	chr1_1:24909743-24909762	Msa0015400:intron	25.0%
!	TAAAGAAACGATCATAAGTA+GGG	-	chr1_1:24910032-24910051	None:intergenic	25.0%
!	TTAAAGAAACGATCATAAGT+AGG	-	chr1_1:24910033-24910052	None:intergenic	25.0%
!!!	ACCATTTGTCATTGTTTTAA+AGG	+	chr1_1:24910122-24910141	Msa0015400:three_prime_UTR	25.0%
!!!	CCATTTGTCATTGTTTTAAA+GGG	+	chr1_1:24910123-24910142	Msa0015400:three_prime_UTR	25.0%
!	ATAGATCTCATTTACTATTC+AGG	-	chr1_1:24910256-24910275	None:intergenic	25.0%
!!!	AGGATCCATTTTTATTAAAG+TGG	+	chr1_1:24910314-24910333	Msa0015400:three_prime_UTR	25.0%
!	AGAATTCCAAAATGACTTTA+AGG	+	chr1_1:24908903-24908922	Msa0015400:CDS	25.0%
!	CTCATACCAAATAAAGAAAA+TGG	-	chr1_1:24908953-24908972	None:intergenic	25.0%
!	GTTGTGATATGAATAAATCA+TGG	+	chr1_1:24908972-24908991	Msa0015400:intron	25.0%
!	GTCCTACTTCTAATAATTAA+AGG	-	chr1_1:24909001-24909020	None:intergenic	25.0%
!!!	ATCAAAGGTTGATAAATCAT+GGG	+	chr1_1:24909042-24909061	Msa0015400:intron	25.0%
!!	CACAAAAAGTACAAATTGTA+TGG	-	chr1_1:24909338-24909357	None:intergenic	25.0%
!!	TGGAATATTTGCAACTTTTT+GGG	-	chr1_1:24909456-24909475	None:intergenic	25.0%
!!	ATGGAATATTTGCAACTTTT+TGG	-	chr1_1:24909457-24909476	None:intergenic	25.0%
!	AAAGTTGCAAATATTCCATT+AGG	+	chr1_1:24909458-24909477	Msa0015400:intron	25.0%
!	ATCAAATATTCGACCAAATT+AGG	-	chr1_1:24909484-24909503	None:intergenic	25.0%
!	TTCATTGAACAACTCATTAA+AGG	+	chr1_1:24909539-24909558	Msa0015400:intron	25.0%
!	AGATGAAAAATTCAAAAGAC+AGG	+	chr1_1:24909585-24909604	Msa0015400:intron	25.0%
!	AAGGATATATAGAATTGATG+AGG	+	chr1_1:24909699-24909718	Msa0015400:intron	25.0%
!	TTTCTATAACTGAGGTTTAT+AGG	+	chr1_1:24909743-24909762	Msa0015400:intron	25.0%
!	TAAAGAAACGATCATAAGTA+GGG	-	chr1_1:24910032-24910051	None:intergenic	25.0%
!	TTAAAGAAACGATCATAAGT+AGG	-	chr1_1:24910033-24910052	None:intergenic	25.0%
!!!	ACCATTTGTCATTGTTTTAA+AGG	+	chr1_1:24910122-24910141	Msa0015400:three_prime_UTR	25.0%
!!!	CCATTTGTCATTGTTTTAAA+GGG	+	chr1_1:24910123-24910142	Msa0015400:three_prime_UTR	25.0%
!	ATAGATCTCATTTACTATTC+AGG	-	chr1_1:24910256-24910275	None:intergenic	25.0%
!!!	AGGATCCATTTTTATTAAAG+TGG	+	chr1_1:24910314-24910333	Msa0015400:three_prime_UTR	25.0%
!!!	GTCATTTTGGAATTCTTTGA+TGG	-	chr1_1:24908899-24908918	None:intergenic	30.0%
!	ATTCCAAAATGACTTTAAGG+AGG	+	chr1_1:24908906-24908925	Msa0015400:CDS	30.0%
!	TTACCTCCTTAAAGTCATTT+TGG	-	chr1_1:24908912-24908931	None:intergenic	30.0%
!!	GATCAAAGGTTGATAAATCA+TGG	+	chr1_1:24909041-24909060	Msa0015400:intron	30.0%
	CAATATCTCTTACAAGAACA+TGG	+	chr1_1:24909208-24909227	Msa0015400:intron	30.0%
!!!	TTGCTTTTATTTTTTGGTGG+AGG	-	chr1_1:24909251-24909270	None:intergenic	30.0%
	GAAAGTCAAAAGAAACTGAA+AGG	-	chr1_1:24909373-24909392	None:intergenic	30.0%
	TTTCACATAACAGCTCAATT+TGG	+	chr1_1:24909389-24909408	Msa0015400:intron	30.0%
	ATATTCCATTAGGCCTAATT+TGG	+	chr1_1:24909468-24909487	Msa0015400:intron	30.0%
	ATAAAATGAGTGTACCACAT+GGG	+	chr1_1:24909636-24909655	Msa0015400:intron	30.0%
	TGAAAATGATATAACCCATG+TGG	-	chr1_1:24909653-24909672	None:intergenic	30.0%
	AGATGATCTTTCTATAACTG+AGG	+	chr1_1:24909735-24909754	Msa0015400:intron	30.0%
	AACCAAGTGTCATAAATATC+AGG	-	chr1_1:24909859-24909878	None:intergenic	30.0%
	TGACACTTGGTTAAATAAGT+CGG	+	chr1_1:24909867-24909886	Msa0015400:CDS	30.0%
	ATGTGTCGTAATAATTAGCA+AGG	-	chr1_1:24910079-24910098	None:intergenic	30.0%
!!	CCCTTTAAAACAATGACAAA+TGG	-	chr1_1:24910126-24910145	None:intergenic	30.0%
!!!	TTTGTCATTGTTTTAAAGGG+TGG	+	chr1_1:24910126-24910145	Msa0015400:three_prime_UTR	30.0%
	ACATCATGGTTGGAAATTAA+CGG	+	chr1_1:24910156-24910175	Msa0015400:three_prime_UTR	30.0%
	CAGGTCATATCTATACAATA+AGG	-	chr1_1:24910237-24910256	None:intergenic	30.0%
	GCACACCACTTTAATAAAAA+TGG	-	chr1_1:24910322-24910341	None:intergenic	30.0%
	TTATTAAAGTGGTGTGCTTT+AGG	+	chr1_1:24910325-24910344	Msa0015400:three_prime_UTR	30.0%
!!!	GTCATTTTGGAATTCTTTGA+TGG	-	chr1_1:24908899-24908918	None:intergenic	30.0%
!	ATTCCAAAATGACTTTAAGG+AGG	+	chr1_1:24908906-24908925	Msa0015400:CDS	30.0%
!	TTACCTCCTTAAAGTCATTT+TGG	-	chr1_1:24908912-24908931	None:intergenic	30.0%
!!	GATCAAAGGTTGATAAATCA+TGG	+	chr1_1:24909041-24909060	Msa0015400:intron	30.0%
	CAATATCTCTTACAAGAACA+TGG	+	chr1_1:24909208-24909227	Msa0015400:intron	30.0%
!!!	TTGCTTTTATTTTTTGGTGG+AGG	-	chr1_1:24909251-24909270	None:intergenic	30.0%
	GAAAGTCAAAAGAAACTGAA+AGG	-	chr1_1:24909373-24909392	None:intergenic	30.0%
	TTTCACATAACAGCTCAATT+TGG	+	chr1_1:24909389-24909408	Msa0015400:intron	30.0%
	ATATTCCATTAGGCCTAATT+TGG	+	chr1_1:24909468-24909487	Msa0015400:intron	30.0%
	ATAAAATGAGTGTACCACAT+GGG	+	chr1_1:24909636-24909655	Msa0015400:intron	30.0%
	TGAAAATGATATAACCCATG+TGG	-	chr1_1:24909653-24909672	None:intergenic	30.0%
	AGATGATCTTTCTATAACTG+AGG	+	chr1_1:24909735-24909754	Msa0015400:intron	30.0%
	AACCAAGTGTCATAAATATC+AGG	-	chr1_1:24909859-24909878	None:intergenic	30.0%
	TGACACTTGGTTAAATAAGT+CGG	+	chr1_1:24909867-24909886	Msa0015400:CDS	30.0%
	ATGTGTCGTAATAATTAGCA+AGG	-	chr1_1:24910079-24910098	None:intergenic	30.0%
!!	CCCTTTAAAACAATGACAAA+TGG	-	chr1_1:24910126-24910145	None:intergenic	30.0%
!!!	TTTGTCATTGTTTTAAAGGG+TGG	+	chr1_1:24910126-24910145	Msa0015400:three_prime_UTR	30.0%
	ACATCATGGTTGGAAATTAA+CGG	+	chr1_1:24910156-24910175	Msa0015400:three_prime_UTR	30.0%
	CAGGTCATATCTATACAATA+AGG	-	chr1_1:24910237-24910256	None:intergenic	30.0%
	GCACACCACTTTAATAAAAA+TGG	-	chr1_1:24910322-24910341	None:intergenic	30.0%
	TTATTAAAGTGGTGTGCTTT+AGG	+	chr1_1:24910325-24910344	Msa0015400:three_prime_UTR	30.0%
!	TGATCTTTGCACTGATGATT+GGG	-	chr1_1:24909026-24909045	None:intergenic	35.0%
!	TTGATCTTTGCACTGATGAT+TGG	-	chr1_1:24909027-24909046	None:intergenic	35.0%
	ATCATCAGTGCAAAGATCAA+AGG	+	chr1_1:24909027-24909046	Msa0015400:intron	35.0%
	CATAAAATGAGTGTACCACA+TGG	+	chr1_1:24909635-24909654	Msa0015400:intron	35.0%
	ATTACGACACATGTAGCATA+CGG	+	chr1_1:24910087-24910106	Msa0015400:three_prime_UTR	35.0%
!!	TGAACACCAAAGTTTTGTGT+AGG	-	chr1_1:24910285-24910304	None:intergenic	35.0%
!!	TTTGGTGTTCATGTAGTTTC+AGG	+	chr1_1:24910294-24910313	Msa0015400:three_prime_UTR	35.0%
!	TGATCTTTGCACTGATGATT+GGG	-	chr1_1:24909026-24909045	None:intergenic	35.0%
!	TTGATCTTTGCACTGATGAT+TGG	-	chr1_1:24909027-24909046	None:intergenic	35.0%
	ATCATCAGTGCAAAGATCAA+AGG	+	chr1_1:24909027-24909046	Msa0015400:intron	35.0%
	CATAAAATGAGTGTACCACA+TGG	+	chr1_1:24909635-24909654	Msa0015400:intron	35.0%
	ATTACGACACATGTAGCATA+CGG	+	chr1_1:24910087-24910106	Msa0015400:three_prime_UTR	35.0%
!!	TGAACACCAAAGTTTTGTGT+AGG	-	chr1_1:24910285-24910304	None:intergenic	35.0%
!!	TTTGGTGTTCATGTAGTTTC+AGG	+	chr1_1:24910294-24910313	Msa0015400:three_prime_UTR	35.0%
	AGCTGCATCTCAACTTCAAT+TGG	-	chr1_1:24909095-24909114	None:intergenic	40.0%
!	ACTTTTAGCACATCTTGTGC+GGG	-	chr1_1:24909177-24909196	None:intergenic	40.0%
!	CACTTTTAGCACATCTTGTG+CGG	-	chr1_1:24909178-24909197	None:intergenic	40.0%
	TTCGACCAAATTAGGCCTAA+TGG	-	chr1_1:24909476-24909495	None:intergenic	40.0%
	CGCCTGATATTTATGACACT+TGG	+	chr1_1:24909854-24909873	Msa0015400:CDS	40.0%
	TCTCTGGACTGATAACTGAA+GGG	-	chr1_1:24909918-24909937	None:intergenic	40.0%
	TTCTCTGGACTGATAACTGA+AGG	-	chr1_1:24909919-24909938	None:intergenic	40.0%
	TGGAAAACACACATCATGGT+TGG	+	chr1_1:24910146-24910165	Msa0015400:three_prime_UTR	40.0%
	AAACACTGCAAACGAAATGC+AGG	-	chr1_1:24910194-24910213	None:intergenic	40.0%
	CTACAGCCTACACAAAACTT+TGG	+	chr1_1:24910276-24910295	Msa0015400:three_prime_UTR	40.0%
	AGCTGCATCTCAACTTCAAT+TGG	-	chr1_1:24909095-24909114	None:intergenic	40.0%
!	ACTTTTAGCACATCTTGTGC+GGG	-	chr1_1:24909177-24909196	None:intergenic	40.0%
!	CACTTTTAGCACATCTTGTG+CGG	-	chr1_1:24909178-24909197	None:intergenic	40.0%
	TTCGACCAAATTAGGCCTAA+TGG	-	chr1_1:24909476-24909495	None:intergenic	40.0%
	CGCCTGATATTTATGACACT+TGG	+	chr1_1:24909854-24909873	Msa0015400:CDS	40.0%
	TCTCTGGACTGATAACTGAA+GGG	-	chr1_1:24909918-24909937	None:intergenic	40.0%
	TTCTCTGGACTGATAACTGA+AGG	-	chr1_1:24909919-24909938	None:intergenic	40.0%
	TGGAAAACACACATCATGGT+TGG	+	chr1_1:24910146-24910165	Msa0015400:three_prime_UTR	40.0%
	AAACACTGCAAACGAAATGC+AGG	-	chr1_1:24910194-24910213	None:intergenic	40.0%
	CTACAGCCTACACAAAACTT+TGG	+	chr1_1:24910276-24910295	Msa0015400:three_prime_UTR	40.0%
	CAGTAGCAGCTTCATCGTAA+GGG	-	chr1_1:24908864-24908883	None:intergenic	45.0%
	ACAGTAGCAGCTTCATCGTA+AGG	-	chr1_1:24908865-24908884	None:intergenic	45.0%
	TTACGATGAAGCTGCTACTG+TGG	+	chr1_1:24908864-24908883	Msa0015400:CDS	45.0%
!	CTTTTAGCACATCTTGTGCG+GGG	-	chr1_1:24909176-24909195	None:intergenic	45.0%
	AGTCCAGAGAATTGAAGACC+AGG	+	chr1_1:24909928-24909947	Msa0015400:three_prime_UTR	45.0%
	GTCCAGAGAATTGAAGACCA+GGG	+	chr1_1:24909929-24909948	Msa0015400:three_prime_UTR	45.0%
	AGGGTGGAAAACACACATCA+TGG	+	chr1_1:24910142-24910161	Msa0015400:three_prime_UTR	45.0%
	CAGTAGCAGCTTCATCGTAA+GGG	-	chr1_1:24908864-24908883	None:intergenic	45.0%
	ACAGTAGCAGCTTCATCGTA+AGG	-	chr1_1:24908865-24908884	None:intergenic	45.0%
	TTACGATGAAGCTGCTACTG+TGG	+	chr1_1:24908864-24908883	Msa0015400:CDS	45.0%
!	CTTTTAGCACATCTTGTGCG+GGG	-	chr1_1:24909176-24909195	None:intergenic	45.0%
	AGTCCAGAGAATTGAAGACC+AGG	+	chr1_1:24909928-24909947	Msa0015400:three_prime_UTR	45.0%
	GTCCAGAGAATTGAAGACCA+GGG	+	chr1_1:24909929-24909948	Msa0015400:three_prime_UTR	45.0%
	AGGGTGGAAAACACACATCA+TGG	+	chr1_1:24910142-24910161	Msa0015400:three_prime_UTR	45.0%
	AGAACATGGCACCAAACCAC+AGG	+	chr1_1:24909222-24909241	Msa0015400:intron	50.0%
!!	TTTTTGGTGGAGGCAACCTG+TGG	-	chr1_1:24909241-24909260	None:intergenic	50.0%
!	GACCCTGGTCTTCAATTCTC+TGG	-	chr1_1:24909934-24909953	None:intergenic	50.0%
	TACACGAGTCAGAATGACCC+TGG	-	chr1_1:24909949-24909968	None:intergenic	50.0%
	AGAACATGGCACCAAACCAC+AGG	+	chr1_1:24909222-24909241	Msa0015400:intron	50.0%
!!	TTTTTGGTGGAGGCAACCTG+TGG	-	chr1_1:24909241-24909260	None:intergenic	50.0%
!	GACCCTGGTCTTCAATTCTC+TGG	-	chr1_1:24909934-24909953	None:intergenic	50.0%
	TACACGAGTCAGAATGACCC+TGG	-	chr1_1:24909949-24909968	None:intergenic	50.0%
	CAGGCGCGAAGAGAACAAAG+TGG	-	chr1_1:24909840-24909859	None:intergenic	55.0%
	CAGGCGCGAAGAGAACAAAG+TGG	-	chr1_1:24909840-24909859	None:intergenic	55.0%
	GGTGGAGGCAACCTGTGGTT+TGG	-	chr1_1:24909236-24909255	None:intergenic	60.0%
	GGTGGAGGCAACCTGTGGTT+TGG	-	chr1_1:24909236-24909255	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	24908835	24910371	24908835	ID=Msa0015400;Name=Msa0015400
chr1_1	mRNA	24908835	24910371	24908835	ID=Msa0015400-mRNA-1;Parent=Msa0015400;Name=Msa0015400-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|1\|0.5\|1\|1\|1\|2\|462\|55
chr1_1	exon	24908835	24908927	24908835	ID=Msa0015400-mRNA-1:exon:8570;Parent=Msa0015400-mRNA-1
chr1_1	exon	24909835	24910371	24909835	ID=Msa0015400-mRNA-1:exon:8571;Parent=Msa0015400-mRNA-1
chr1_1	CDS	24908835	24908927	24908835	ID=Msa0015400-mRNA-1:cds;Parent=Msa0015400-mRNA-1
chr1_1	CDS	24909835	24909909	24909835	ID=Msa0015400-mRNA-1:cds;Parent=Msa0015400-mRNA-1
chr1_1	three_prime_UTR	24909910	24910371	24909910	ID=Msa0015400-mRNA-1:three_prime_utr;Parent=Msa0015400-mRNA-1

Gene Sequence	>Msa0015400 ATGTTAACTGATGCATTTTTCAGATACCCTTACGATGAAGCTGCTACTGTGGCTATTTCTACCATCAAAGAATTCCAAAATGACTTTAAGGAGGTCCACTTTGTTCTCTTCGCGCCTGATATTTATGACACTTGGTTAAATAAGTCGGATGAATTGCTGAAAGATTAG
Protein sequence	>Msa0015400 MLTDAFFRYPYDEAATVAISTIKEFQNDFKEVHFVLFAPDIYDTWLNKSDELLKD*