Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0854620 | XP_039690018.1 | 95.000 | 280 | 13 | 1 | 1 | 279 | 13 | 292 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0854620 | A0A396HTG6 | 95.000 | 280 | 13 | 1 | 1 | 279 | 13 | 292 | 0.0 | 543 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0109990 | Msa0854620 | 0.805411 | 1.352439e-49 | -8.615850e-47 |
| Msa0734790 | Msa0854620 | 0.840165 | 1.024916e-57 | -8.615850e-47 |
| Msa0734800 | Msa0854620 | 0.910893 | 1.124701e-82 | -8.615850e-47 |
| Msa0776720 | Msa0854620 | 0.813651 | 2.297379e-51 | -8.615850e-47 |
| Msa0813950 | Msa0854620 | 0.833673 | 4.659035e-56 | -8.615850e-47 |
| Msa0153430 | Msa0854620 | 0.830580 | 2.711168e-55 | -8.615850e-47 |
| Msa0193010 | Msa0854620 | 0.829610 | 4.674471e-55 | -8.615850e-47 |
| Msa0232860 | Msa0854620 | 0.804453 | 2.145089e-49 | -8.615850e-47 |
| Msa0284810 | Msa0854620 | 0.802281 | 6.043892e-49 | -8.615850e-47 |
| Msa0854620 | Msa0885130 | 0.803688 | 3.093939e-49 | -8.615850e-47 |
| Msa0854620 | Msa1009190 | 0.821695 | 3.522248e-53 | -8.615850e-47 |
| Msa0854620 | Msa1050480 | 0.807329 | 5.329844e-50 | -8.615850e-47 |
| Msa0854620 | Msa1198090 | 0.822636 | 2.130733e-53 | -8.615850e-47 |
| Msa0854620 | Msa1272960 | 0.808988 | 2.362945e-50 | -8.615850e-47 |
| Msa0854620 | Msa1406600 | 0.801163 | 1.024935e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0854620 | MtrunA17_Chr5g0431801 | 95.000 | 280 | 13 | 1 | 1 | 279 | 13 | 292 | 0.0 | 543 |
| Msa0854620 | MtrunA17_Chr5g0431851 | 92.593 | 270 | 19 | 1 | 1 | 270 | 13 | 281 | 2.21e-177 | 490 |
| Msa0854620 | MtrunA17_Chr5g0431821 | 73.826 | 298 | 59 | 1 | 1 | 279 | 13 | 310 | 1.37e-152 | 432 |
| Msa0854620 | MtrunA17_Chr5g0431811 | 56.869 | 313 | 99 | 5 | 1 | 279 | 13 | 323 | 6.86e-105 | 328 |
| Msa0854620 | MtrunA17_Chr5g0431741 | 57.042 | 284 | 115 | 5 | 1 | 279 | 13 | 294 | 9.73e-99 | 304 |
| Msa0854620 | MtrunA17_Chr5g0431761 | 54.386 | 285 | 122 | 6 | 1 | 279 | 13 | 295 | 6.61e-97 | 296 |
| Msa0854620 | MtrunA17_Chr5g0432041 | 54.122 | 279 | 123 | 3 | 1 | 279 | 14 | 287 | 1.10e-94 | 293 |
| Msa0854620 | MtrunA17_Chr5g0432091 | 51.916 | 287 | 128 | 6 | 1 | 279 | 13 | 297 | 3.41e-83 | 263 |
| Msa0854620 | MtrunA17_Chr5g0432181 | 51.779 | 253 | 100 | 5 | 1 | 233 | 13 | 263 | 6.83e-79 | 242 |
| Msa0854620 | MtrunA17_Chr5g0431981 | 48.227 | 282 | 130 | 5 | 1 | 279 | 13 | 281 | 1.10e-77 | 240 |
| Msa0854620 | MtrunA17_Chr5g0431991 | 46.953 | 279 | 143 | 4 | 1 | 279 | 13 | 286 | 5.67e-77 | 240 |
| Msa0854620 | MtrunA17_Chr3g0104851 | 43.299 | 291 | 120 | 6 | 1 | 279 | 27 | 284 | 4.86e-69 | 226 |
| Msa0854620 | MtrunA17_Chr5g0444661 | 63.399 | 153 | 54 | 2 | 1 | 153 | 14 | 164 | 1.60e-62 | 203 |
| Msa0854620 | MtrunA17_Chr5g0431751 | 44.484 | 281 | 115 | 7 | 1 | 278 | 13 | 255 | 1.75e-61 | 196 |
| Msa0854620 | MtrunA17_Chr5g0431891 | 62.805 | 164 | 42 | 1 | 135 | 279 | 1 | 164 | 1.18e-57 | 186 |
| Msa0854620 | MtrunA17_Chr7g0231451 | 52.821 | 195 | 81 | 6 | 2 | 190 | 11 | 200 | 1.01e-55 | 181 |
| Msa0854620 | MtrunA17_Chr5g0431921 | 41.569 | 255 | 132 | 7 | 2 | 246 | 14 | 261 | 6.16e-51 | 168 |
| Msa0854620 | MtrunA17_Chr5g0432051 | 55.000 | 160 | 70 | 2 | 1 | 160 | 24 | 181 | 1.79e-47 | 159 |
| Msa0854620 | MtrunA17_Chr5g0432031 | 51.553 | 161 | 75 | 3 | 1 | 160 | 24 | 182 | 1.59e-45 | 154 |
| Msa0854620 | MtrunA17_Chr5g0431951 | 53.846 | 117 | 52 | 2 | 2 | 118 | 28 | 142 | 6.49e-35 | 123 |
| Msa0854620 | MtrunA17_Chr6g0482231 | 36.932 | 176 | 110 | 1 | 6 | 181 | 109 | 283 | 1.99e-28 | 111 |
| Msa0854620 | MtrunA17_Chr6g0482191 | 37.297 | 185 | 109 | 2 | 5 | 183 | 477 | 660 | 3.10e-28 | 113 |
| Msa0854620 | MtrunA17_Chr5g0431961 | 62.821 | 78 | 28 | 1 | 1 | 78 | 14 | 90 | 1.72e-26 | 99.4 |
| Msa0854620 | MtrunA17_Chr5g0431901 | 41.139 | 158 | 52 | 3 | 139 | 273 | 1 | 140 | 5.88e-24 | 94.4 |
| Msa0854620 | MtrunA17_Chr5g0444671 | 38.750 | 160 | 73 | 4 | 6 | 165 | 15 | 149 | 6.39e-22 | 89.7 |
| Msa0854620 | MtrunA17_Chr6g0482151 | 38.406 | 138 | 83 | 2 | 15 | 152 | 4 | 139 | 1.40e-20 | 86.3 |
| Msa0854620 | MtrunA17_Chr5g0431911 | 33.880 | 183 | 80 | 4 | 2 | 183 | 14 | 156 | 9.56e-15 | 70.1 |
| Msa0854620 | MtrunA17_Chr6g0480951 | 43.023 | 86 | 46 | 2 | 6 | 89 | 226 | 310 | 1.18e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCAGTGGTTCTTAATA+TGG | 0.196083 | 5_4:+47266406 | Msa0854620:CDS |
| GGATTTGCTGCTGTTGTTGC+TGG | 0.254444 | 5_4:+47265894 | Msa0854620:CDS |
| TCTTCCTTCAACTATCTCTT+TGG | 0.283998 | 5_4:+47265939 | Msa0854620:CDS |
| TGTTTCCTCTAGGTCTTTGA+TGG | 0.289475 | 5_4:-47266615 | None:intergenic |
| AAAGTCCATTCAAATGGTTT+TGG | 0.296790 | 5_4:+47266514 | Msa0854620:CDS |
| TCATACAACATTTGTTGTAT+TGG | 0.324138 | 5_4:+47266076 | Msa0854620:CDS |
| TAATATGGATTCTCTACAAC+TGG | 0.399665 | 5_4:+47266421 | Msa0854620:CDS |
| TCCTTCAACTATCTCTTTGG+AGG | 0.401422 | 5_4:+47265942 | Msa0854620:CDS |
| CAACTGGCTAGTACTAATAT+TGG | 0.425336 | 5_4:+47266437 | Msa0854620:CDS |
| ATGTGCGTCCTTTGCTGTCA+CGG | 0.435172 | 5_4:+47266172 | Msa0854620:CDS |
| AGGCTCCAAAACCATTTGAA+TGG | 0.441764 | 5_4:-47266519 | None:intergenic |
| CCCACAAATCTCCACACCTT+TGG | 0.444313 | 5_4:-47265873 | None:intergenic |
| GAACCACTGAATTTCCATCT+TGG | 0.449916 | 5_4:-47266397 | None:intergenic |
| CCAAAGGTGTGGAGATTTGT+GGG | 0.449986 | 5_4:+47265873 | Msa0854620:CDS |
| AGAGGAAACAACAAATGTTA+TGG | 0.453162 | 5_4:+47266628 | Msa0854620:CDS |
| AAATTCAAAGTCCATTCAAA+TGG | 0.453874 | 5_4:+47266508 | Msa0854620:CDS |
| CAACGCGTCAAACATGAAGT+TGG | 0.460762 | 5_4:-47266582 | None:intergenic |
| TAACATTTGTTGTTTCCTCT+AGG | 0.473814 | 5_4:-47266625 | None:intergenic |
| CTAGTACTAATATTGGTAGT+AGG | 0.477743 | 5_4:+47266444 | Msa0854620:CDS |
| GAAATGAGACTCCATGCATC+TGG | 0.481164 | 5_4:-47266149 | None:intergenic |
| TCCTCCAAAGAGATAGTTGA+AGG | 0.485636 | 5_4:-47265943 | None:intergenic |
| ACACTCACAATCGGTGATAG+AGG | 0.488023 | 5_4:+47266556 | Msa0854620:CDS |
| ACAAATGTTATGGCGAGGGC+CGG | 0.488972 | 5_4:+47266638 | Msa0854620:CDS |
| AACGCGTCAAACATGAAGTT+GGG | 0.499337 | 5_4:-47266581 | None:intergenic |
| TCAACTATCTCTTTGGAGGA+TGG | 0.506399 | 5_4:+47265946 | Msa0854620:CDS |
| CAAATGTTATGGCGAGGGCC+GGG | 0.513454 | 5_4:+47266639 | Msa0854620:CDS |
| TACTAATATTGGTAGTAGGT+TGG | 0.517377 | 5_4:+47266448 | Msa0854620:CDS |
| AAAACTTAAACACTCACAAT+CGG | 0.520932 | 5_4:+47266547 | Msa0854620:CDS |
| GGCAACACTCAAGAAGTCAT+TGG | 0.523682 | 5_4:+47266045 | Msa0854620:CDS |
| TCTAGCATCTATTGAAGGAA+AGG | 0.524621 | 5_4:-47266351 | None:intergenic |
| TGCATAATACGCCAGATGCA+TGG | 0.531259 | 5_4:+47266138 | Msa0854620:CDS |
| CAGTGCTCTGAATTCCAAGA+TGG | 0.561368 | 5_4:+47266383 | Msa0854620:CDS |
| GCCAAAGGTGTGGAGATTTG+TGG | 0.566628 | 5_4:+47265872 | Msa0854620:CDS |
| AACAACAAATGTTATGGCGA+GGG | 0.585862 | 5_4:+47266634 | Msa0854620:CDS |
| TCACGGCGCTTAGTTTGTCA+AGG | 0.598752 | 5_4:+47266189 | Msa0854620:CDS |
| ACTAAGCGCCGTGACAGCAA+AGG | 0.607967 | 5_4:-47266180 | None:intergenic |
| CGTGTGAAGGCACTCGAGCA+CGG | 0.617949 | 5_4:+47266485 | Msa0854620:CDS |
| AAACAACAAATGTTATGGCG+AGG | 0.620335 | 5_4:+47266633 | Msa0854620:CDS |
| ATTCCAAGATGGAAATTCAG+TGG | 0.625640 | 5_4:+47266394 | Msa0854620:CDS |
| AAAACTCGAGACTCGTGTGA+AGG | 0.633334 | 5_4:+47266472 | Msa0854620:CDS |
| ATGTGTACAACAATAGTCGT+AGG | 0.639424 | 5_4:+47266681 | Msa0854620:CDS |
| CTATTGAAGGAAAGGATGAA+CGG | 0.640738 | 5_4:-47266343 | None:intergenic |
| CTTTGGAGGATGGACCATGT+TGG | 0.645605 | 5_4:+47265956 | Msa0854620:CDS |
| GGATGATGCAGCCAAAGGTG+TGG | 0.649228 | 5_4:+47265862 | None:intergenic |
| TCAAGGAACGAAACTCAATG+TGG | 0.661190 | 5_4:+47266206 | Msa0854620:CDS |
| TGAGTGTTGCCATATCCTTG+CGG | 0.691705 | 5_4:-47266033 | None:intergenic |
| GAGATGGATGATGCAGCCAA+AGG | 0.694750 | 5_4:+47265857 | None:intergenic |
| AGAAACCATCAAAGACCTAG+AGG | 0.695509 | 5_4:+47266610 | Msa0854620:CDS |
| GTAAAGAGTTATCACCAACA+TGG | 0.757087 | 5_4:-47265970 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GCATTGAAATTATTCATTTT+TGG | + | chr5_4:47266290-47266309 | Msa0854620:CDS | 20.0% |
| !!! | GCATTGAAATTATTCATTTT+TGG | + | chr5_4:47266290-47266309 | Msa0854620:CDS | 20.0% |
| !!! | TCATACAACATTTGTTGTAT+TGG | + | chr5_4:47266076-47266095 | Msa0854620:CDS | 25.0% |
| !! | GATCTTCTATATTTTCTTCT+TGG | + | chr5_4:47266239-47266258 | Msa0854620:CDS | 25.0% |
| ! | AAATTCAGTGGTTCTTAATA+TGG | + | chr5_4:47266406-47266425 | Msa0854620:CDS | 25.0% |
| ! | AAATTCAAAGTCCATTCAAA+TGG | + | chr5_4:47266508-47266527 | Msa0854620:CDS | 25.0% |
| ! | AAAACTTAAACACTCACAAT+CGG | + | chr5_4:47266547-47266566 | Msa0854620:CDS | 25.0% |
| !!! | TCATACAACATTTGTTGTAT+TGG | + | chr5_4:47266076-47266095 | Msa0854620:CDS | 25.0% |
| !! | GATCTTCTATATTTTCTTCT+TGG | + | chr5_4:47266239-47266258 | Msa0854620:CDS | 25.0% |
| ! | AAATTCAGTGGTTCTTAATA+TGG | + | chr5_4:47266406-47266425 | Msa0854620:CDS | 25.0% |
| ! | AAATTCAAAGTCCATTCAAA+TGG | + | chr5_4:47266508-47266527 | Msa0854620:CDS | 25.0% |
| ! | AAAACTTAAACACTCACAAT+CGG | + | chr5_4:47266547-47266566 | Msa0854620:CDS | 25.0% |
| ! | TTTTCTCTAGCATCTATTGA+AGG | - | chr5_4:47266359-47266378 | None:intergenic | 30.0% |
| TAATATGGATTCTCTACAAC+TGG | + | chr5_4:47266421-47266440 | Msa0854620:CDS | 30.0% | |
| ! | CTAGTACTAATATTGGTAGT+AGG | + | chr5_4:47266444-47266463 | Msa0854620:CDS | 30.0% |
| ! | TACTAATATTGGTAGTAGGT+TGG | + | chr5_4:47266448-47266467 | Msa0854620:CDS | 30.0% |
| ! | AAAGTCCATTCAAATGGTTT+TGG | + | chr5_4:47266514-47266533 | Msa0854620:CDS | 30.0% |
| !! | GAGTGTTTAAGTTTTCTTAC+AGG | - | chr5_4:47266542-47266561 | None:intergenic | 30.0% |
| !! | TAACATTTGTTGTTTCCTCT+AGG | - | chr5_4:47266628-47266647 | None:intergenic | 30.0% |
| AGAGGAAACAACAAATGTTA+TGG | + | chr5_4:47266628-47266647 | Msa0854620:CDS | 30.0% | |
| GAAAAAATTGTTCTCAAACC+CGG | - | chr5_4:47266660-47266679 | None:intergenic | 30.0% | |
| ! | TTTTCTCTAGCATCTATTGA+AGG | - | chr5_4:47266359-47266378 | None:intergenic | 30.0% |
| TAATATGGATTCTCTACAAC+TGG | + | chr5_4:47266421-47266440 | Msa0854620:CDS | 30.0% | |
| ! | CTAGTACTAATATTGGTAGT+AGG | + | chr5_4:47266444-47266463 | Msa0854620:CDS | 30.0% |
| ! | TACTAATATTGGTAGTAGGT+TGG | + | chr5_4:47266448-47266467 | Msa0854620:CDS | 30.0% |
| ! | AAAGTCCATTCAAATGGTTT+TGG | + | chr5_4:47266514-47266533 | Msa0854620:CDS | 30.0% |
| !! | GAGTGTTTAAGTTTTCTTAC+AGG | - | chr5_4:47266542-47266561 | None:intergenic | 30.0% |
| !! | TAACATTTGTTGTTTCCTCT+AGG | - | chr5_4:47266628-47266647 | None:intergenic | 30.0% |
| AGAGGAAACAACAAATGTTA+TGG | + | chr5_4:47266628-47266647 | Msa0854620:CDS | 30.0% | |
| GAAAAAATTGTTCTCAAACC+CGG | - | chr5_4:47266660-47266679 | None:intergenic | 30.0% | |
| TCTTCCTTCAACTATCTCTT+TGG | + | chr5_4:47265939-47265958 | Msa0854620:CDS | 35.0% | |
| GTAAAGAGTTATCACCAACA+TGG | - | chr5_4:47265973-47265992 | None:intergenic | 35.0% | |
| !!! | TGTTAGTTTTATTTGCCGCA+AGG | + | chr5_4:47266018-47266037 | Msa0854620:CDS | 35.0% |
| !! | TTTTATTTGCCGCAAGGATA+TGG | + | chr5_4:47266024-47266043 | Msa0854620:CDS | 35.0% |
| CTATTGAAGGAAAGGATGAA+CGG | - | chr5_4:47266346-47266365 | None:intergenic | 35.0% | |
| TCTAGCATCTATTGAAGGAA+AGG | - | chr5_4:47266354-47266373 | None:intergenic | 35.0% | |
| ATTCCAAGATGGAAATTCAG+TGG | + | chr5_4:47266394-47266413 | Msa0854620:CDS | 35.0% | |
| CAACTGGCTAGTACTAATAT+TGG | + | chr5_4:47266437-47266456 | Msa0854620:CDS | 35.0% | |
| AAACAACAAATGTTATGGCG+AGG | + | chr5_4:47266633-47266652 | Msa0854620:CDS | 35.0% | |
| AACAACAAATGTTATGGCGA+GGG | + | chr5_4:47266634-47266653 | Msa0854620:CDS | 35.0% | |
| ATGTGTACAACAATAGTCGT+AGG | + | chr5_4:47266681-47266700 | Msa0854620:CDS | 35.0% | |
| TCTTCCTTCAACTATCTCTT+TGG | + | chr5_4:47265939-47265958 | Msa0854620:CDS | 35.0% | |
| GTAAAGAGTTATCACCAACA+TGG | - | chr5_4:47265973-47265992 | None:intergenic | 35.0% | |
| !!! | TGTTAGTTTTATTTGCCGCA+AGG | + | chr5_4:47266018-47266037 | Msa0854620:CDS | 35.0% |
| !! | TTTTATTTGCCGCAAGGATA+TGG | + | chr5_4:47266024-47266043 | Msa0854620:CDS | 35.0% |
| CTATTGAAGGAAAGGATGAA+CGG | - | chr5_4:47266346-47266365 | None:intergenic | 35.0% | |
| TCTAGCATCTATTGAAGGAA+AGG | - | chr5_4:47266354-47266373 | None:intergenic | 35.0% | |
| ATTCCAAGATGGAAATTCAG+TGG | + | chr5_4:47266394-47266413 | Msa0854620:CDS | 35.0% | |
| CAACTGGCTAGTACTAATAT+TGG | + | chr5_4:47266437-47266456 | Msa0854620:CDS | 35.0% | |
| AAACAACAAATGTTATGGCG+AGG | + | chr5_4:47266633-47266652 | Msa0854620:CDS | 35.0% | |
| AACAACAAATGTTATGGCGA+GGG | + | chr5_4:47266634-47266653 | Msa0854620:CDS | 35.0% | |
| ATGTGTACAACAATAGTCGT+AGG | + | chr5_4:47266681-47266700 | Msa0854620:CDS | 35.0% | |
| TCCTTCAACTATCTCTTTGG+AGG | + | chr5_4:47265942-47265961 | Msa0854620:CDS | 40.0% | |
| TCCTCCAAAGAGATAGTTGA+AGG | - | chr5_4:47265946-47265965 | None:intergenic | 40.0% | |
| ! | TCAACTATCTCTTTGGAGGA+TGG | + | chr5_4:47265946-47265965 | Msa0854620:CDS | 40.0% |
| TCAAGGAACGAAACTCAATG+TGG | + | chr5_4:47266206-47266225 | Msa0854620:CDS | 40.0% | |
| GAACCACTGAATTTCCATCT+TGG | - | chr5_4:47266400-47266419 | None:intergenic | 40.0% | |
| AGGCTCCAAAACCATTTGAA+TGG | - | chr5_4:47266522-47266541 | None:intergenic | 40.0% | |
| AACGCGTCAAACATGAAGTT+GGG | - | chr5_4:47266584-47266603 | None:intergenic | 40.0% | |
| AGAAACCATCAAAGACCTAG+AGG | + | chr5_4:47266610-47266629 | Msa0854620:CDS | 40.0% | |
| TGTTTCCTCTAGGTCTTTGA+TGG | - | chr5_4:47266618-47266637 | None:intergenic | 40.0% | |
| TCCTTCAACTATCTCTTTGG+AGG | + | chr5_4:47265942-47265961 | Msa0854620:CDS | 40.0% | |
| TCCTCCAAAGAGATAGTTGA+AGG | - | chr5_4:47265946-47265965 | None:intergenic | 40.0% | |
| ! | TCAACTATCTCTTTGGAGGA+TGG | + | chr5_4:47265946-47265965 | Msa0854620:CDS | 40.0% |
| TCAAGGAACGAAACTCAATG+TGG | + | chr5_4:47266206-47266225 | Msa0854620:CDS | 40.0% | |
| GAACCACTGAATTTCCATCT+TGG | - | chr5_4:47266400-47266419 | None:intergenic | 40.0% | |
| AGGCTCCAAAACCATTTGAA+TGG | - | chr5_4:47266522-47266541 | None:intergenic | 40.0% | |
| AACGCGTCAAACATGAAGTT+GGG | - | chr5_4:47266584-47266603 | None:intergenic | 40.0% | |
| AGAAACCATCAAAGACCTAG+AGG | + | chr5_4:47266610-47266629 | Msa0854620:CDS | 40.0% | |
| TGTTTCCTCTAGGTCTTTGA+TGG | - | chr5_4:47266618-47266637 | None:intergenic | 40.0% | |
| ! | CCAAAGGTGTGGAGATTTGT+GGG | + | chr5_4:47265873-47265892 | Msa0854620:CDS | 45.0% |
| ! | TGAGTGTTGCCATATCCTTG+CGG | - | chr5_4:47266036-47266055 | None:intergenic | 45.0% |
| GGCAACACTCAAGAAGTCAT+TGG | + | chr5_4:47266045-47266064 | Msa0854620:CDS | 45.0% | |
| TGCATAATACGCCAGATGCA+TGG | + | chr5_4:47266138-47266157 | Msa0854620:CDS | 45.0% | |
| GAAATGAGACTCCATGCATC+TGG | - | chr5_4:47266152-47266171 | None:intergenic | 45.0% | |
| ! | CAGTGCTCTGAATTCCAAGA+TGG | + | chr5_4:47266383-47266402 | Msa0854620:CDS | 45.0% |
| AAAACTCGAGACTCGTGTGA+AGG | + | chr5_4:47266472-47266491 | Msa0854620:CDS | 45.0% | |
| ACACTCACAATCGGTGATAG+AGG | + | chr5_4:47266556-47266575 | Msa0854620:CDS | 45.0% | |
| CAACGCGTCAAACATGAAGT+TGG | - | chr5_4:47266585-47266604 | None:intergenic | 45.0% | |
| ! | CCAAAGGTGTGGAGATTTGT+GGG | + | chr5_4:47265873-47265892 | Msa0854620:CDS | 45.0% |
| ! | TGAGTGTTGCCATATCCTTG+CGG | - | chr5_4:47266036-47266055 | None:intergenic | 45.0% |
| GGCAACACTCAAGAAGTCAT+TGG | + | chr5_4:47266045-47266064 | Msa0854620:CDS | 45.0% | |
| TGCATAATACGCCAGATGCA+TGG | + | chr5_4:47266138-47266157 | Msa0854620:CDS | 45.0% | |
| GAAATGAGACTCCATGCATC+TGG | - | chr5_4:47266152-47266171 | None:intergenic | 45.0% | |
| ! | CAGTGCTCTGAATTCCAAGA+TGG | + | chr5_4:47266383-47266402 | Msa0854620:CDS | 45.0% |
| AAAACTCGAGACTCGTGTGA+AGG | + | chr5_4:47266472-47266491 | Msa0854620:CDS | 45.0% | |
| ACACTCACAATCGGTGATAG+AGG | + | chr5_4:47266556-47266575 | Msa0854620:CDS | 45.0% | |
| CAACGCGTCAAACATGAAGT+TGG | - | chr5_4:47266585-47266604 | None:intergenic | 45.0% | |
| ! | GCCAAAGGTGTGGAGATTTG+TGG | + | chr5_4:47265872-47265891 | Msa0854620:CDS | 50.0% |
| CCCACAAATCTCCACACCTT+TGG | - | chr5_4:47265876-47265895 | None:intergenic | 50.0% | |
| !! | GGATTTGCTGCTGTTGTTGC+TGG | + | chr5_4:47265894-47265913 | Msa0854620:CDS | 50.0% |
| ! | CTTTGGAGGATGGACCATGT+TGG | + | chr5_4:47265956-47265975 | Msa0854620:CDS | 50.0% |
| ! | ATGTGCGTCCTTTGCTGTCA+CGG | + | chr5_4:47266172-47266191 | Msa0854620:CDS | 50.0% |
| !! | TCACGGCGCTTAGTTTGTCA+AGG | + | chr5_4:47266189-47266208 | Msa0854620:CDS | 50.0% |
| ACAAATGTTATGGCGAGGGC+CGG | + | chr5_4:47266638-47266657 | Msa0854620:CDS | 50.0% | |
| ! | GCCAAAGGTGTGGAGATTTG+TGG | + | chr5_4:47265872-47265891 | Msa0854620:CDS | 50.0% |
| CCCACAAATCTCCACACCTT+TGG | - | chr5_4:47265876-47265895 | None:intergenic | 50.0% | |
| !! | GGATTTGCTGCTGTTGTTGC+TGG | + | chr5_4:47265894-47265913 | Msa0854620:CDS | 50.0% |
| ! | CTTTGGAGGATGGACCATGT+TGG | + | chr5_4:47265956-47265975 | Msa0854620:CDS | 50.0% |
| ! | ATGTGCGTCCTTTGCTGTCA+CGG | + | chr5_4:47266172-47266191 | Msa0854620:CDS | 50.0% |
| !! | TCACGGCGCTTAGTTTGTCA+AGG | + | chr5_4:47266189-47266208 | Msa0854620:CDS | 50.0% |
| ACAAATGTTATGGCGAGGGC+CGG | + | chr5_4:47266638-47266657 | Msa0854620:CDS | 50.0% | |
| ! | ACTAAGCGCCGTGACAGCAA+AGG | - | chr5_4:47266183-47266202 | None:intergenic | 55.0% |
| CAAATGTTATGGCGAGGGCC+GGG | + | chr5_4:47266639-47266658 | Msa0854620:CDS | 55.0% | |
| ! | ACTAAGCGCCGTGACAGCAA+AGG | - | chr5_4:47266183-47266202 | None:intergenic | 55.0% |
| CAAATGTTATGGCGAGGGCC+GGG | + | chr5_4:47266639-47266658 | Msa0854620:CDS | 55.0% | |
| !! | CGTGTGAAGGCACTCGAGCA+CGG | + | chr5_4:47266485-47266504 | Msa0854620:CDS | 60.0% |
| !! | CGTGTGAAGGCACTCGAGCA+CGG | + | chr5_4:47266485-47266504 | Msa0854620:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 47265867 | 47266706 | 47265867 | ID=Msa0854620;Name=Msa0854620 |
| chr5_4 | mRNA | 47265867 | 47266706 | 47265867 | ID=Msa0854620-mRNA-1;Parent=Msa0854620;Name=Msa0854620-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|-1|0|1|-1|1|1|0|279 |
| chr5_4 | exon | 47265867 | 47266706 | 47265867 | ID=Msa0854620-mRNA-1:exon:14926;Parent=Msa0854620-mRNA-1 |
| chr5_4 | CDS | 47265867 | 47266706 | 47265867 | ID=Msa0854620-mRNA-1:cds;Parent=Msa0854620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
