Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0109990 | XP_013467077.1 | 98.440 | 577 | 9 | 0 | 1 | 577 | 3 | 579 | 0.0 | 1164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0109990 | sp|Q9FNL7|PTR3_ARATH | 62.241 | 580 | 207 | 4 | 6 | 576 | 6 | 582 | 0.0 | 726 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0109990 | A0A072VH07 | 98.440 | 577 | 9 | 0 | 1 | 577 | 3 | 579 | 0.0 | 1164 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005300 | Msa0109990 | 0.800060 | 1.720397e-48 | -8.615850e-47 |
| Msa0021460 | Msa0109990 | 0.856183 | 3.822777e-62 | -8.615850e-47 |
| Msa0033340 | Msa0109990 | 0.812951 | 3.273959e-51 | -8.615850e-47 |
| Msa0053750 | Msa0109990 | 0.808579 | 2.889433e-50 | -8.615850e-47 |
| Msa0109970 | Msa0109990 | 0.891345 | 4.325972e-74 | -8.615850e-47 |
| Msa0109990 | Msa0137330 | 0.843864 | 1.078141e-58 | -8.615850e-47 |
| Msa0109990 | Msa0142230 | 0.893006 | 9.386499e-75 | -8.615850e-47 |
| Msa0109990 | Msa0148260 | 0.810204 | 1.294422e-50 | -8.615850e-47 |
| Msa0109990 | Msa0156170 | 0.895452 | 9.457431e-76 | -8.615850e-47 |
| Msa0109990 | Msa0156190 | 0.876650 | 1.179854e-68 | -8.615850e-47 |
| Msa0109990 | Msa0193010 | 0.858785 | 6.489562e-63 | -8.615850e-47 |
| Msa0109990 | Msa0201390 | 0.806621 | 7.527831e-50 | -8.615850e-47 |
| Msa0109990 | Msa0203070 | 0.811628 | 6.365760e-51 | -8.615850e-47 |
| Msa0109990 | Msa0232860 | 0.803677 | 3.110599e-49 | -8.615850e-47 |
| Msa0109990 | Msa0235190 | 0.819110 | 1.379695e-52 | -8.615850e-47 |
| Msa0109990 | Msa0273560 | 0.801739 | 7.812181e-49 | -8.615850e-47 |
| Msa0109990 | Msa0282600 | 0.804374 | 2.227457e-49 | -8.615850e-47 |
| Msa0109990 | Msa0284810 | 0.814603 | 1.416189e-51 | -8.615850e-47 |
| Msa0109990 | Msa0313790 | 0.820015 | 8.574057e-53 | -8.615850e-47 |
| Msa0109990 | Msa0323550 | 0.812420 | 4.278076e-51 | -8.615850e-47 |
| Msa0109990 | Msa0458700 | 0.810203 | 1.295388e-50 | -8.615850e-47 |
| Msa0109990 | Msa0533430 | 0.805641 | 1.210300e-49 | -8.615850e-47 |
| Msa0109990 | Msa0580610 | 0.802967 | 4.362401e-49 | -8.615850e-47 |
| Msa0109990 | Msa0618430 | 0.806739 | 7.104719e-50 | -8.615850e-47 |
| Msa0109990 | Msa0629850 | 0.815186 | 1.051976e-51 | -8.615850e-47 |
| Msa0109990 | Msa0629940 | 0.823859 | 1.104062e-53 | -8.615850e-47 |
| Msa0109990 | Msa0696800 | 0.810565 | 1.082294e-50 | -8.615850e-47 |
| Msa0109990 | Msa0754180 | 0.803209 | 3.887806e-49 | -8.615850e-47 |
| Msa0109990 | Msa0784580 | 0.814363 | 1.600551e-51 | -8.615850e-47 |
| Msa0109990 | Msa0818010 | 0.824085 | 9.769099e-54 | -8.615850e-47 |
| Msa0109990 | Msa0818030 | 0.850109 | 2.099925e-60 | -8.615850e-47 |
| Msa0109990 | Msa0854620 | 0.805411 | 1.352439e-49 | -8.615850e-47 |
| Msa0109990 | Msa0858360 | 0.816056 | 6.730541e-52 | -8.615850e-47 |
| Msa0109990 | Msa0885130 | 0.804167 | 2.459552e-49 | -8.615850e-47 |
| Msa0109990 | Msa0912500 | 0.809035 | 2.308337e-50 | -8.615850e-47 |
| Msa0109990 | Msa1006250 | 0.833662 | 4.687660e-56 | -8.615850e-47 |
| Msa0109990 | Msa1006400 | 0.805484 | 1.305427e-49 | -8.615850e-47 |
| Msa0109990 | Msa1006680 | 0.805884 | 1.075856e-49 | -8.615850e-47 |
| Msa0109990 | Msa1009190 | 0.827800 | 1.280602e-54 | -8.615850e-47 |
| Msa0109990 | Msa1043600 | 0.809753 | 1.619144e-50 | -8.615850e-47 |
| Msa0109990 | Msa1048490 | 0.820699 | 5.976323e-53 | -8.615850e-47 |
| Msa0109990 | Msa1050480 | 0.813897 | 2.028029e-51 | -8.615850e-47 |
| Msa0109990 | Msa1107800 | 0.820694 | 5.990858e-53 | -8.615850e-47 |
| Msa0109990 | Msa1279850 | 0.803924 | 2.763530e-49 | -8.615850e-47 |
| Msa0109990 | Msa1406600 | 0.996135 | 8.200223e-224 | -8.615850e-47 |
| Msa0109990 | Msa1423990 | 0.802612 | 5.165468e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0109990 | MtrunA17_Chr1g0166741 | 98.440 | 577 | 9 | 0 | 1 | 577 | 3 | 579 | 0.0 | 1164 |
| Msa0109990 | MtrunA17_Chr1g0166791 | 81.772 | 587 | 97 | 2 | 1 | 580 | 3 | 586 | 0.0 | 999 |
| Msa0109990 | MtrunA17_Chr1g0166771 | 90.037 | 542 | 54 | 0 | 39 | 580 | 5 | 546 | 0.0 | 988 |
| Msa0109990 | MtrunA17_Chr1g0187241 | 69.966 | 586 | 164 | 4 | 1 | 576 | 1 | 584 | 0.0 | 867 |
| Msa0109990 | MtrunA17_Chr1g0166711 | 72.945 | 584 | 150 | 2 | 1 | 577 | 1 | 583 | 0.0 | 862 |
| Msa0109990 | MtrunA17_Chr7g0261811 | 58.481 | 566 | 224 | 4 | 8 | 564 | 10 | 573 | 0.0 | 708 |
| Msa0109990 | MtrunA17_Chr7g0261881 | 57.774 | 566 | 228 | 4 | 8 | 564 | 10 | 573 | 0.0 | 703 |
| Msa0109990 | MtrunA17_Chr7g0261791 | 59.292 | 565 | 218 | 4 | 2 | 556 | 6 | 568 | 0.0 | 702 |
| Msa0109990 | MtrunA17_Chr7g0261771 | 57.597 | 566 | 229 | 4 | 8 | 564 | 14 | 577 | 0.0 | 702 |
| Msa0109990 | MtrunA17_Chr1g0166731 | 73.987 | 469 | 114 | 2 | 111 | 572 | 8 | 475 | 0.0 | 688 |
| Msa0109990 | MtrunA17_Chr7g0261851 | 58.584 | 565 | 223 | 4 | 1 | 556 | 4 | 566 | 0.0 | 675 |
| Msa0109990 | MtrunA17_Chr7g0261661 | 57.484 | 461 | 185 | 5 | 113 | 564 | 1 | 459 | 0.0 | 556 |
| Msa0109990 | MtrunA17_Chr3g0114501 | 47.304 | 575 | 289 | 5 | 8 | 572 | 5 | 575 | 0.0 | 542 |
| Msa0109990 | MtrunA17_Chr7g0261751 | 52.200 | 500 | 192 | 5 | 8 | 462 | 14 | 511 | 0.0 | 533 |
| Msa0109990 | MtrunA17_Chr8g0375311 | 42.557 | 571 | 309 | 4 | 1 | 555 | 12 | 579 | 2.16e-173 | 504 |
| Msa0109990 | MtrunA17_Chr8g0375291 | 43.363 | 565 | 301 | 4 | 2 | 550 | 13 | 574 | 4.76e-173 | 503 |
| Msa0109990 | MtrunA17_Chr3g0104011 | 43.979 | 573 | 302 | 8 | 1 | 561 | 1 | 566 | 3.48e-167 | 487 |
| Msa0109990 | MtrunA17_Chr7g0241741 | 41.873 | 566 | 313 | 5 | 10 | 564 | 7 | 567 | 4.28e-162 | 474 |
| Msa0109990 | MtrunA17_Chr8g0375351 | 40.000 | 575 | 318 | 6 | 1 | 555 | 12 | 579 | 1.89e-159 | 468 |
| Msa0109990 | MtrunA17_Chr4g0005901 | 41.901 | 568 | 310 | 6 | 2 | 558 | 13 | 571 | 3.75e-159 | 467 |
| Msa0109990 | MtrunA17_Chr8g0375341 | 39.024 | 574 | 331 | 4 | 1 | 558 | 12 | 582 | 3.72e-158 | 465 |
| Msa0109990 | MtrunA17_Chr8g0375321 | 40.071 | 564 | 315 | 5 | 8 | 555 | 20 | 576 | 8.97e-156 | 459 |
| Msa0109990 | MtrunA17_Chr8g0375331 | 40.780 | 564 | 311 | 5 | 8 | 555 | 7 | 563 | 1.98e-154 | 454 |
| Msa0109990 | MtrunA17_Chr7g0261731 | 60.355 | 338 | 131 | 2 | 8 | 344 | 14 | 349 | 1.33e-153 | 444 |
| Msa0109990 | MtrunA17_Chr3g0112611 | 38.966 | 580 | 334 | 8 | 8 | 575 | 15 | 586 | 6.49e-149 | 441 |
| Msa0109990 | MtrunA17_Chr7g0240381 | 41.135 | 564 | 314 | 10 | 9 | 567 | 13 | 563 | 1.65e-148 | 440 |
| Msa0109990 | MtrunA17_Chr8g0375361 | 38.918 | 573 | 332 | 4 | 1 | 558 | 12 | 581 | 1.91e-147 | 437 |
| Msa0109990 | MtrunA17_Chr3g0112671 | 39.748 | 556 | 321 | 8 | 8 | 559 | 16 | 561 | 2.42e-146 | 434 |
| Msa0109990 | MtrunA17_Chr4g0008651 | 38.830 | 564 | 329 | 9 | 9 | 563 | 18 | 574 | 1.64e-141 | 422 |
| Msa0109990 | MtrunA17_Chr3g0142101 | 38.256 | 562 | 329 | 9 | 2 | 555 | 12 | 563 | 4.99e-140 | 418 |
| Msa0109990 | MtrunA17_Chr3g0142091 | 39.085 | 568 | 330 | 8 | 2 | 561 | 3 | 562 | 1.06e-137 | 412 |
| Msa0109990 | MtrunA17_Chr3g0077151 | 38.968 | 562 | 297 | 8 | 11 | 558 | 14 | 543 | 4.39e-135 | 404 |
| Msa0109990 | MtrunA17_Chr4g0014781 | 38.378 | 555 | 309 | 8 | 13 | 556 | 17 | 549 | 2.06e-133 | 400 |
| Msa0109990 | MtrunA17_Chr4g0014871 | 37.770 | 556 | 312 | 8 | 13 | 556 | 18 | 551 | 2.38e-132 | 398 |
| Msa0109990 | MtrunA17_Chr4g0014791 | 39.568 | 556 | 299 | 8 | 13 | 556 | 17 | 547 | 5.20e-132 | 397 |
| Msa0109990 | MtrunA17_Chr4g0014841 | 38.710 | 558 | 305 | 8 | 11 | 556 | 15 | 547 | 9.22e-132 | 396 |
| Msa0109990 | MtrunA17_Chr4g0014801 | 38.559 | 555 | 308 | 8 | 13 | 556 | 17 | 549 | 9.19e-130 | 391 |
| Msa0109990 | MtrunA17_Chr5g0399061 | 36.918 | 558 | 332 | 6 | 17 | 558 | 19 | 572 | 1.08e-127 | 387 |
| Msa0109990 | MtrunA17_Chr5g0399071 | 38.542 | 576 | 333 | 7 | 17 | 577 | 17 | 586 | 4.62e-127 | 385 |
| Msa0109990 | MtrunA17_Chr5g0422881 | 35.986 | 553 | 339 | 5 | 19 | 558 | 14 | 564 | 8.24e-127 | 384 |
| Msa0109990 | MtrunA17_Chr5g0400371 | 35.346 | 563 | 349 | 4 | 9 | 557 | 96 | 657 | 7.39e-126 | 385 |
| Msa0109990 | MtrunA17_Chr4g0056431 | 39.177 | 559 | 321 | 5 | 17 | 558 | 17 | 573 | 3.43e-124 | 378 |
| Msa0109990 | MtrunA17_Chr7g0255621 | 35.263 | 570 | 342 | 7 | 2 | 555 | 4 | 562 | 8.71e-124 | 377 |
| Msa0109990 | MtrunA17_Chr1g0213711 | 34.705 | 559 | 356 | 5 | 5 | 557 | 1 | 556 | 1.06e-123 | 376 |
| Msa0109990 | MtrunA17_Chr4g0054891 | 34.650 | 557 | 354 | 4 | 8 | 555 | 93 | 648 | 1.07e-122 | 376 |
| Msa0109990 | MtrunA17_Chr7g0255601 | 34.851 | 571 | 352 | 6 | 1 | 555 | 3 | 569 | 4.87e-122 | 373 |
| Msa0109990 | MtrunA17_Chr4g0063591 | 38.031 | 589 | 339 | 7 | 1 | 576 | 1 | 576 | 1.87e-121 | 370 |
| Msa0109990 | MtrunA17_Chr7g0217461 | 34.875 | 562 | 346 | 5 | 11 | 555 | 10 | 568 | 1.09e-120 | 369 |
| Msa0109990 | MtrunA17_Chr5g0439381 | 37.634 | 558 | 329 | 5 | 13 | 563 | 16 | 561 | 2.10e-120 | 368 |
| Msa0109990 | MtrunA17_Chr7g0218851 | 35.009 | 557 | 353 | 5 | 18 | 567 | 39 | 593 | 5.76e-120 | 367 |
| Msa0109990 | MtrunA17_Chr7g0214461 | 34.007 | 544 | 352 | 4 | 29 | 567 | 82 | 623 | 2.33e-119 | 367 |
| Msa0109990 | MtrunA17_Chr8g0353031 | 36.870 | 575 | 321 | 8 | 26 | 579 | 19 | 572 | 8.70e-119 | 363 |
| Msa0109990 | MtrunA17_Chr7g0255611 | 34.609 | 575 | 350 | 9 | 1 | 555 | 3 | 571 | 3.71e-118 | 362 |
| Msa0109990 | MtrunA17_Chr2g0284701 | 34.790 | 572 | 349 | 7 | 13 | 560 | 19 | 590 | 1.64e-114 | 353 |
| Msa0109990 | MtrunA17_Chr5g0415791 | 34.495 | 574 | 345 | 6 | 25 | 575 | 29 | 594 | 5.57e-111 | 344 |
| Msa0109990 | MtrunA17_Chr7g0214731 | 33.913 | 575 | 360 | 8 | 6 | 560 | 40 | 614 | 3.20e-110 | 343 |
| Msa0109990 | MtrunA17_Chr4g0011041 | 31.866 | 568 | 369 | 7 | 2 | 555 | 15 | 578 | 6.28e-110 | 340 |
| Msa0109990 | MtrunA17_Chr2g0276751 | 32.804 | 567 | 363 | 8 | 1 | 562 | 14 | 567 | 7.08e-106 | 330 |
| Msa0109990 | MtrunA17_Chr5g0415961 | 33.803 | 568 | 351 | 7 | 13 | 560 | 12 | 574 | 5.75e-105 | 328 |
| Msa0109990 | MtrunA17_Chr3g0133341 | 33.517 | 543 | 342 | 6 | 24 | 555 | 13 | 547 | 1.38e-102 | 321 |
| Msa0109990 | MtrunA17_Chr4g0011471 | 33.771 | 533 | 337 | 5 | 36 | 555 | 27 | 556 | 2.12e-102 | 321 |
| Msa0109990 | MtrunA17_Chr8g0362711 | 32.865 | 569 | 350 | 7 | 14 | 559 | 13 | 572 | 8.37e-101 | 317 |
| Msa0109990 | MtrunA17_Chr4g0014861 | 37.678 | 422 | 243 | 5 | 146 | 556 | 14 | 426 | 4.07e-98 | 305 |
| Msa0109990 | MtrunA17_Chr3g0082631 | 36.364 | 484 | 243 | 8 | 109 | 560 | 11 | 461 | 4.09e-97 | 304 |
| Msa0109990 | MtrunA17_Chr4g0060001 | 32.546 | 593 | 372 | 10 | 1 | 569 | 1 | 589 | 7.16e-97 | 307 |
| Msa0109990 | MtrunA17_Chr7g0271221 | 31.777 | 557 | 368 | 6 | 12 | 564 | 4 | 552 | 8.47e-97 | 306 |
| Msa0109990 | MtrunA17_Chr1g0193391 | 31.228 | 570 | 374 | 9 | 6 | 569 | 1 | 558 | 2.49e-96 | 306 |
| Msa0109990 | MtrunA17_Chr8g0379971 | 34.010 | 591 | 342 | 13 | 13 | 560 | 8 | 593 | 8.98e-96 | 305 |
| Msa0109990 | MtrunA17_Chr4g0059991 | 32.981 | 567 | 354 | 8 | 30 | 574 | 27 | 589 | 1.30e-95 | 304 |
| Msa0109990 | MtrunA17_Chr7g0240271 | 31.504 | 565 | 370 | 6 | 8 | 557 | 7 | 569 | 4.20e-94 | 300 |
| Msa0109990 | MtrunA17_Chr4g0059981 | 31.145 | 594 | 374 | 8 | 5 | 567 | 1 | 590 | 5.11e-94 | 300 |
| Msa0109990 | MtrunA17_Chr4g0059971 | 32.550 | 553 | 342 | 8 | 30 | 558 | 39 | 584 | 8.29e-94 | 299 |
| Msa0109990 | MtrunA17_Chr8g0362781 | 31.216 | 551 | 359 | 5 | 24 | 555 | 29 | 578 | 2.06e-92 | 295 |
| Msa0109990 | MtrunA17_Chr1g0157601 | 31.694 | 549 | 339 | 11 | 29 | 555 | 19 | 553 | 2.49e-89 | 286 |
| Msa0109990 | MtrunA17_Chr7g0240281 | 33.452 | 562 | 356 | 9 | 12 | 556 | 10 | 570 | 3.51e-89 | 287 |
| Msa0109990 | MtrunA17_Chr8g0390331 | 30.123 | 571 | 371 | 8 | 19 | 571 | 9 | 569 | 3.73e-89 | 286 |
| Msa0109990 | MtrunA17_Chr4g0069581 | 31.827 | 531 | 352 | 5 | 42 | 568 | 3 | 527 | 1.87e-88 | 284 |
| Msa0109990 | MtrunA17_Chr8g0362801 | 33.619 | 467 | 291 | 6 | 113 | 562 | 1 | 465 | 1.39e-86 | 277 |
| Msa0109990 | MtrunA17_Chr6g0451841 | 30.824 | 558 | 326 | 12 | 32 | 560 | 12 | 538 | 1.50e-83 | 271 |
| Msa0109990 | MtrunA17_Chr8g0379991 | 31.173 | 571 | 332 | 10 | 46 | 560 | 1 | 566 | 1.31e-82 | 269 |
| Msa0109990 | MtrunA17_Chr1g0147631 | 30.797 | 552 | 349 | 9 | 25 | 555 | 25 | 564 | 1.47e-82 | 270 |
| Msa0109990 | MtrunA17_Chr1g0157611 | 29.891 | 552 | 355 | 10 | 24 | 555 | 15 | 554 | 2.43e-79 | 260 |
| Msa0109990 | MtrunA17_Chr2g0331471 | 31.542 | 577 | 353 | 15 | 25 | 574 | 88 | 649 | 1.15e-78 | 262 |
| Msa0109990 | MtrunA17_Chr4g0003761 | 30.450 | 555 | 359 | 11 | 29 | 565 | 34 | 579 | 8.26e-78 | 257 |
| Msa0109990 | MtrunA17_Chr1g0157621 | 30.228 | 526 | 342 | 10 | 46 | 555 | 1 | 517 | 2.35e-76 | 252 |
| Msa0109990 | MtrunA17_Chr2g0331481 | 31.542 | 577 | 352 | 16 | 25 | 574 | 26 | 586 | 2.57e-76 | 254 |
| Msa0109990 | MtrunA17_Chr2g0331511 | 30.411 | 559 | 344 | 15 | 25 | 555 | 21 | 562 | 2.64e-76 | 254 |
| Msa0109990 | MtrunA17_Chr7g0235521 | 33.043 | 460 | 291 | 6 | 113 | 557 | 1 | 458 | 3.09e-75 | 247 |
| Msa0109990 | MtrunA17_Chr7g0240211 | 33.043 | 460 | 291 | 6 | 113 | 557 | 1 | 458 | 2.41e-74 | 244 |
| Msa0109990 | MtrunA17_Chr7g0240181 | 33.043 | 460 | 291 | 6 | 113 | 557 | 1 | 458 | 3.17e-74 | 244 |
| Msa0109990 | MtrunA17_Chr2g0331521 | 27.256 | 554 | 368 | 14 | 25 | 555 | 22 | 563 | 3.49e-74 | 247 |
| Msa0109990 | MtrunA17_Chr7g0240131 | 32.826 | 460 | 292 | 6 | 113 | 557 | 1 | 458 | 7.35e-74 | 243 |
| Msa0109990 | MtrunA17_Chr2g0325951 | 27.158 | 556 | 379 | 7 | 13 | 555 | 2 | 544 | 3.33e-73 | 244 |
| Msa0109990 | MtrunA17_Chr3g0142111 | 37.338 | 308 | 187 | 3 | 2 | 307 | 23 | 326 | 1.23e-69 | 228 |
| Msa0109990 | MtrunA17_Chr2g0326211 | 27.957 | 558 | 372 | 10 | 13 | 555 | 2 | 544 | 1.27e-69 | 234 |
| Msa0109990 | MtrunA17_Chr5g0415841 | 31.453 | 461 | 293 | 8 | 113 | 555 | 1 | 456 | 7.42e-69 | 230 |
| Msa0109990 | MtrunA17_Chr7g0261721 | 52.239 | 201 | 89 | 1 | 368 | 561 | 4 | 204 | 9.22e-69 | 222 |
| Msa0109990 | MtrunA17_Chr7g0240151 | 31.957 | 460 | 278 | 7 | 113 | 557 | 1 | 440 | 1.44e-68 | 229 |
| Msa0109990 | MtrunA17_Chr2g0325961 | 28.064 | 563 | 366 | 10 | 13 | 555 | 2 | 545 | 2.40e-68 | 231 |
| Msa0109990 | MtrunA17_Chr1g0177591 | 29.508 | 549 | 353 | 14 | 25 | 560 | 42 | 569 | 2.78e-67 | 228 |
| Msa0109990 | MtrunA17_Chr2g0331461 | 30.824 | 558 | 352 | 15 | 25 | 560 | 26 | 571 | 3.42e-67 | 230 |
| Msa0109990 | MtrunA17_Chr7g0234381 | 32.000 | 450 | 270 | 6 | 110 | 555 | 1 | 418 | 1.09e-64 | 217 |
| Msa0109990 | MtrunA17_Chr7g0234151 | 32.000 | 450 | 270 | 6 | 110 | 555 | 1 | 418 | 2.86e-63 | 214 |
| Msa0109990 | MtrunA17_Chr3g0112631 | 36.552 | 290 | 166 | 6 | 300 | 577 | 3 | 286 | 1.43e-62 | 208 |
| Msa0109990 | MtrunA17_Chr7g0234181 | 32.127 | 442 | 270 | 6 | 115 | 555 | 1 | 413 | 1.39e-60 | 206 |
| Msa0109990 | MtrunA17_Chr1g0177611 | 30.714 | 420 | 271 | 9 | 152 | 560 | 30 | 440 | 4.23e-58 | 201 |
| Msa0109990 | MtrunA17_Chr1g0177631 | 30.310 | 419 | 274 | 8 | 152 | 560 | 30 | 440 | 5.11e-55 | 192 |
| Msa0109990 | MtrunA17_Chr3g0142121 | 38.610 | 259 | 151 | 5 | 301 | 555 | 11 | 265 | 1.06e-54 | 187 |
| Msa0109990 | MtrunA17_Chr1g0166721 | 63.846 | 130 | 42 | 1 | 1 | 130 | 1 | 125 | 4.75e-53 | 177 |
| Msa0109990 | MtrunA17_Chr4g0060071 | 34.114 | 299 | 180 | 4 | 270 | 555 | 1 | 295 | 1.80e-48 | 171 |
| Msa0109990 | MtrunA17_Chr7g0261831 | 50.641 | 156 | 73 | 3 | 255 | 408 | 1 | 154 | 5.69e-46 | 161 |
| Msa0109990 | MtrunA17_Chr7g0261671 | 66.019 | 103 | 35 | 0 | 8 | 110 | 15 | 117 | 4.71e-44 | 152 |
| Msa0109990 | MtrunA17_Chr3g0112651 | 42.353 | 170 | 93 | 1 | 111 | 280 | 20 | 184 | 1.15e-39 | 144 |
| Msa0109990 | MtrunA17_Chr1g0147591 | 32.500 | 200 | 119 | 4 | 149 | 338 | 3 | 196 | 7.60e-28 | 110 |
| Msa0109990 | MtrunA17_Chr7g0261821 | 61.194 | 67 | 26 | 0 | 496 | 562 | 1 | 67 | 3.69e-23 | 93.2 |
| Msa0109990 | MtrunA17_Chr4g0014851 | 41.837 | 98 | 57 | 0 | 13 | 110 | 18 | 115 | 4.51e-23 | 96.3 |
| Msa0109990 | MtrunA17_Chr4g0060061 | 37.190 | 121 | 76 | 0 | 138 | 258 | 8 | 128 | 6.96e-22 | 91.7 |
| Msa0109990 | MtrunA17_Chr3g0112661 | 41.584 | 101 | 59 | 0 | 10 | 110 | 16 | 116 | 9.14e-22 | 91.7 |
| Msa0109990 | MtrunA17_Chr2g0326221 | 25.439 | 228 | 147 | 5 | 329 | 555 | 15 | 220 | 1.78e-16 | 79.0 |
| Msa0109990 | MtrunA17_Chr8g0362791 | 40.698 | 86 | 51 | 0 | 30 | 115 | 41 | 126 | 1.59e-15 | 73.9 |
| Msa0109990 | MtrunA17_Chr3g0082621 | 47.761 | 67 | 35 | 0 | 44 | 110 | 5 | 71 | 1.04e-14 | 69.7 |
| Msa0109990 | MtrunA17_Chr4g0060051 | 34.906 | 106 | 66 | 1 | 1 | 106 | 1 | 103 | 1.58e-14 | 70.5 |
| Msa0109990 | MtrunA17_Chr7g0261841 | 53.704 | 54 | 24 | 1 | 113 | 165 | 1 | 54 | 7.73e-13 | 64.3 |
| Msa0109990 | MtrunA17_Chr1g0166761 | 78.947 | 38 | 7 | 1 | 1 | 38 | 3 | 39 | 8.05e-12 | 61.2 |
| Msa0109990 | MtrunA17_Chr7g0240221 | 32.673 | 101 | 66 | 1 | 1 | 99 | 1 | 101 | 3.88e-11 | 60.8 |
| Msa0109990 | MtrunA17_Chr7g0240191 | 32.673 | 101 | 66 | 1 | 1 | 99 | 1 | 101 | 3.88e-11 | 60.8 |
| Msa0109990 | MtrunA17_Chr7g0240161 | 32.673 | 101 | 66 | 1 | 1 | 99 | 1 | 101 | 3.88e-11 | 60.8 |
| Msa0109990 | MtrunA17_Chr7g0240141 | 32.673 | 101 | 66 | 1 | 1 | 99 | 1 | 101 | 4.48e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0109990 | AT5G46050.1 | 62.241 | 580 | 207 | 4 | 6 | 576 | 6 | 582 | 0.0 | 726 |
| Msa0109990 | AT5G46040.1 | 61.296 | 571 | 209 | 4 | 6 | 567 | 6 | 573 | 0.0 | 692 |
| Msa0109990 | AT5G46050.2 | 60.465 | 473 | 175 | 4 | 113 | 576 | 1 | 470 | 0.0 | 565 |
| Msa0109990 | AT2G40460.1 | 49.107 | 560 | 267 | 6 | 10 | 560 | 7 | 557 | 0.0 | 549 |
| Msa0109990 | AT3G54140.1 | 43.229 | 576 | 308 | 6 | 1 | 564 | 1 | 569 | 2.18e-171 | 498 |
| Msa0109990 | AT3G54140.2 | 43.229 | 576 | 308 | 6 | 1 | 564 | 1 | 569 | 2.18e-171 | 498 |
| Msa0109990 | AT5G01180.2 | 42.606 | 568 | 309 | 5 | 10 | 565 | 8 | 570 | 2.57e-163 | 478 |
| Msa0109990 | AT5G01180.3 | 42.606 | 568 | 309 | 5 | 10 | 565 | 8 | 570 | 2.57e-163 | 478 |
| Msa0109990 | AT5G01180.1 | 42.606 | 568 | 309 | 5 | 10 | 565 | 8 | 570 | 2.57e-163 | 478 |
| Msa0109990 | AT2G02040.1 | 40.522 | 575 | 323 | 5 | 1 | 559 | 12 | 583 | 2.27e-162 | 476 |
| Msa0109990 | AT1G62200.1 | 41.392 | 546 | 314 | 2 | 11 | 551 | 36 | 580 | 2.21e-159 | 468 |
| Msa0109990 | AT1G62200.3 | 39.304 | 575 | 314 | 3 | 11 | 551 | 50 | 623 | 1.77e-152 | 452 |
| Msa0109990 | AT1G62200.2 | 39.304 | 575 | 314 | 3 | 11 | 551 | 36 | 609 | 1.92e-152 | 452 |
| Msa0109990 | AT3G53960.1 | 40.545 | 587 | 327 | 9 | 8 | 580 | 18 | 596 | 9.14e-151 | 447 |
| Msa0109990 | AT2G37900.1 | 40.472 | 551 | 315 | 6 | 8 | 553 | 19 | 561 | 1.35e-150 | 445 |
| Msa0109990 | AT2G02020.1 | 39.362 | 564 | 290 | 7 | 1 | 550 | 13 | 538 | 4.51e-145 | 430 |
| Msa0109990 | AT3G54450.1 | 37.658 | 555 | 310 | 8 | 22 | 558 | 6 | 542 | 1.01e-133 | 401 |
| Msa0109990 | AT1G12110.1 | 38.328 | 574 | 336 | 6 | 17 | 577 | 17 | 585 | 4.50e-133 | 401 |
| Msa0109990 | AT2G37900.2 | 41.068 | 487 | 274 | 6 | 72 | 553 | 4 | 482 | 3.34e-131 | 393 |
| Msa0109990 | AT2G26690.1 | 37.679 | 560 | 328 | 5 | 8 | 555 | 5 | 555 | 2.59e-123 | 375 |
| Msa0109990 | AT1G32450.1 | 35.626 | 567 | 345 | 7 | 7 | 555 | 17 | 581 | 1.93e-122 | 374 |
| Msa0109990 | AT1G72140.1 | 36.538 | 572 | 316 | 8 | 2 | 556 | 9 | 550 | 2.95e-122 | 372 |
| Msa0109990 | AT2G02020.2 | 35.816 | 564 | 289 | 9 | 1 | 550 | 13 | 517 | 1.36e-121 | 369 |
| Msa0109990 | AT1G22540.1 | 37.117 | 555 | 318 | 8 | 15 | 558 | 18 | 552 | 4.62e-121 | 369 |
| Msa0109990 | AT1G68570.1 | 37.753 | 543 | 320 | 5 | 29 | 555 | 25 | 565 | 1.20e-117 | 361 |
| Msa0109990 | AT4G21680.1 | 35.336 | 566 | 338 | 7 | 11 | 555 | 12 | 570 | 1.80e-117 | 361 |
| Msa0109990 | AT1G68570.2 | 38.113 | 530 | 310 | 5 | 42 | 555 | 8 | 535 | 3.93e-117 | 359 |
| Msa0109990 | AT2G26690.2 | 38.213 | 526 | 304 | 5 | 42 | 555 | 6 | 522 | 7.84e-116 | 355 |
| Msa0109990 | AT1G22550.1 | 35.377 | 571 | 338 | 8 | 2 | 558 | 6 | 559 | 1.37e-115 | 355 |
| Msa0109990 | AT5G19640.1 | 34.918 | 547 | 334 | 8 | 28 | 566 | 60 | 592 | 1.14e-114 | 354 |
| Msa0109990 | AT2G26690.3 | 38.417 | 518 | 298 | 5 | 50 | 555 | 2 | 510 | 7.61e-114 | 349 |
| Msa0109990 | AT3G21670.1 | 37.300 | 563 | 328 | 5 | 12 | 561 | 11 | 561 | 3.96e-113 | 350 |
| Msa0109990 | AT1G72130.1 | 34.705 | 559 | 319 | 9 | 6 | 556 | 11 | 531 | 1.03e-112 | 347 |
| Msa0109990 | AT1G59740.1 | 33.333 | 561 | 369 | 4 | 9 | 564 | 23 | 583 | 1.10e-112 | 348 |
| Msa0109990 | AT1G22570.1 | 36.649 | 573 | 329 | 11 | 2 | 558 | 6 | 560 | 4.59e-111 | 343 |
| Msa0109990 | AT1G72125.1 | 35.816 | 564 | 331 | 9 | 8 | 558 | 11 | 556 | 7.79e-110 | 340 |
| Msa0109990 | AT1G72120.1 | 35.752 | 565 | 326 | 10 | 8 | 558 | 11 | 552 | 3.54e-108 | 336 |
| Msa0109990 | AT5G13400.1 | 34.091 | 572 | 359 | 8 | 6 | 559 | 41 | 612 | 9.06e-108 | 337 |
| Msa0109990 | AT1G33440.1 | 35.192 | 574 | 351 | 9 | 9 | 568 | 20 | 586 | 6.18e-106 | 331 |
| Msa0109990 | AT1G69850.1 | 32.186 | 581 | 359 | 6 | 13 | 564 | 11 | 585 | 1.60e-105 | 330 |
| Msa0109990 | AT1G27040.1 | 33.097 | 565 | 361 | 4 | 1 | 555 | 1 | 558 | 3.89e-105 | 328 |
| Msa0109990 | AT1G27040.2 | 32.977 | 561 | 359 | 4 | 5 | 555 | 1 | 554 | 4.15e-104 | 325 |
| Msa0109990 | AT1G69870.1 | 34.124 | 548 | 341 | 7 | 24 | 555 | 48 | 591 | 9.48e-104 | 326 |
| Msa0109990 | AT1G22570.2 | 37.288 | 531 | 300 | 10 | 44 | 558 | 10 | 523 | 1.57e-103 | 323 |
| Msa0109990 | AT3G16180.1 | 31.359 | 574 | 364 | 9 | 25 | 576 | 21 | 586 | 3.42e-98 | 311 |
| Msa0109990 | AT1G27040.3 | 33.015 | 524 | 334 | 4 | 42 | 555 | 10 | 526 | 1.18e-96 | 305 |
| Msa0109990 | AT1G18880.1 | 32.787 | 549 | 339 | 7 | 30 | 555 | 22 | 563 | 1.81e-95 | 303 |
| Msa0109990 | AT1G52190.1 | 29.965 | 574 | 373 | 9 | 25 | 575 | 19 | 586 | 7.66e-94 | 300 |
| Msa0109990 | AT5G28470.2 | 31.115 | 556 | 359 | 11 | 22 | 563 | 12 | 557 | 9.04e-90 | 288 |
| Msa0109990 | AT5G14940.1 | 30.357 | 560 | 345 | 9 | 25 | 560 | 5 | 543 | 2.47e-89 | 286 |
| Msa0109990 | AT5G62680.1 | 31.091 | 550 | 349 | 7 | 30 | 555 | 46 | 589 | 4.03e-89 | 288 |
| Msa0109990 | AT5G28470.1 | 30.935 | 556 | 358 | 12 | 22 | 563 | 12 | 555 | 4.69e-87 | 281 |
| Msa0109990 | AT3G45700.1 | 32.714 | 538 | 337 | 11 | 26 | 558 | 15 | 532 | 5.39e-87 | 280 |
| Msa0109990 | AT3G25260.1 | 32.163 | 541 | 329 | 10 | 17 | 555 | 11 | 515 | 8.86e-87 | 279 |
| Msa0109990 | AT1G27080.1 | 32.971 | 552 | 347 | 11 | 21 | 559 | 8 | 549 | 1.93e-86 | 280 |
| Msa0109990 | AT3G47960.1 | 31.818 | 550 | 343 | 9 | 30 | 555 | 64 | 605 | 7.43e-86 | 280 |
| Msa0109990 | AT3G45710.1 | 31.720 | 558 | 354 | 11 | 11 | 558 | 4 | 544 | 7.00e-85 | 275 |
| Msa0109990 | AT1G69860.1 | 31.919 | 542 | 353 | 7 | 25 | 558 | 16 | 549 | 7.95e-84 | 272 |
| Msa0109990 | AT5G62730.1 | 29.577 | 568 | 358 | 6 | 13 | 560 | 42 | 587 | 1.48e-83 | 272 |
| Msa0109990 | AT1G72130.2 | 33.879 | 428 | 255 | 6 | 137 | 556 | 6 | 413 | 1.82e-83 | 267 |
| Msa0109990 | AT1G72130.3 | 33.879 | 428 | 255 | 6 | 137 | 556 | 6 | 413 | 1.82e-83 | 267 |
| Msa0109990 | AT3G45680.1 | 31.919 | 542 | 342 | 11 | 26 | 558 | 19 | 542 | 2.22e-83 | 271 |
| Msa0109990 | AT3G45650.1 | 31.217 | 567 | 352 | 10 | 6 | 558 | 1 | 543 | 1.24e-82 | 269 |
| Msa0109990 | AT3G01350.1 | 29.739 | 575 | 348 | 12 | 24 | 563 | 3 | 556 | 1.77e-80 | 263 |
| Msa0109990 | AT3G45720.1 | 30.309 | 551 | 356 | 10 | 17 | 558 | 9 | 540 | 1.58e-78 | 258 |
| Msa0109990 | AT5G62730.2 | 29.562 | 548 | 344 | 6 | 33 | 560 | 3 | 528 | 2.81e-78 | 257 |
| Msa0109990 | AT1G27080.2 | 33.140 | 516 | 322 | 11 | 57 | 559 | 2 | 507 | 3.01e-78 | 257 |
| Msa0109990 | AT3G45660.1 | 31.295 | 556 | 342 | 11 | 18 | 558 | 12 | 542 | 7.17e-78 | 256 |
| Msa0109990 | AT3G45660.3 | 31.295 | 556 | 342 | 11 | 18 | 558 | 12 | 542 | 7.17e-78 | 256 |
| Msa0109990 | AT3G45660.2 | 31.115 | 556 | 343 | 11 | 18 | 558 | 33 | 563 | 1.63e-77 | 256 |
| Msa0109990 | AT3G45650.2 | 30.017 | 593 | 351 | 12 | 6 | 558 | 1 | 569 | 3.14e-77 | 256 |
| Msa0109990 | AT3G25280.1 | 30.000 | 540 | 348 | 6 | 17 | 555 | 11 | 521 | 1.54e-75 | 249 |
| Msa0109990 | AT3G45690.1 | 29.981 | 537 | 318 | 14 | 26 | 558 | 17 | 499 | 9.15e-73 | 242 |
| Msa0109990 | AT2G38100.2 | 23.800 | 521 | 339 | 14 | 55 | 555 | 2 | 484 | 3.95e-35 | 139 |
| Msa0109990 | AT2G38100.1 | 23.800 | 521 | 339 | 14 | 55 | 555 | 18 | 500 | 4.83e-35 | 139 |
| Msa0109990 | AT2G38100.3 | 23.800 | 521 | 339 | 14 | 55 | 555 | 24 | 506 | 5.59e-35 | 139 |
| Msa0109990 | AT5G11570.1 | 31.579 | 247 | 162 | 4 | 312 | 555 | 234 | 476 | 1.68e-32 | 131 |
| Msa0109990 | AT5G11570.1 | 25.751 | 233 | 161 | 5 | 13 | 242 | 2 | 225 | 1.20e-21 | 99.0 |
Find 119 sgRNAs with CRISPR-Local
Find 376 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGACTCTTCATGCTTTC+TGG | 0.014850 | 1_3:-22366170 | None:intergenic |
| TCCTTAGCTTAATCCCTATT+TGG | 0.099616 | 1_3:+22365727 | Msa0109990:CDS |
| TTTGAAAGAATTGCTTATTT+TGG | 0.103448 | 1_3:+22359625 | Msa0109990:CDS |
| ATCAATTTGTGTCTATAAAA+AGG | 0.166876 | 1_3:-22364334 | None:intergenic |
| CTAAGCTCATATAATTCTTT+AGG | 0.174512 | 1_3:-22364436 | None:intergenic |
| TTCTGCCTTTGTTTATTTAT+CGG | 0.205483 | 1_3:+22359810 | Msa0109990:CDS |
| GCTACCACAATTTATACTTA+TGG | 0.212994 | 1_3:+22366091 | Msa0109990:CDS |
| GATGGAACTATTGATCTTAA+AGG | 0.228746 | 1_3:+22358848 | Msa0109990:CDS |
| TCTAACTCTCTAAAAGTTCT+TGG | 0.230349 | 1_3:+22366419 | Msa0109990:CDS |
| ACATCCATTTCATGGCATTT+AGG | 0.235530 | 1_3:-22363998 | None:intergenic |
| TATAGACACAAATTGATTAA+AGG | 0.242682 | 1_3:+22364340 | Msa0109990:CDS |
| ATAAATGTAGCAACCCAAAT+AGG | 0.258960 | 1_3:-22365741 | None:intergenic |
| ACCTTAGCCATGCTAATAAA+TGG | 0.260599 | 1_3:-22364367 | None:intergenic |
| TGGATGTCCTGCATTGTCTT+TGG | 0.276074 | 1_3:+22364193 | Msa0109990:CDS |
| AGCAATGTAAGCTCCTAATA+TGG | 0.280361 | 1_3:-22359752 | None:intergenic |
| CTACCACAATTTATACTTAT+GGG | 0.281391 | 1_3:+22366092 | Msa0109990:CDS |
| CATGGCATTTAGGTGGCTTT+AGG | 0.282645 | 1_3:-22363988 | None:intergenic |
| CTTGAACTTTGTCTTCTTTG+TGG | 0.285699 | 1_3:+22366361 | Msa0109990:CDS |
| TAAGCTCATATAATTCTTTA+GGG | 0.288071 | 1_3:-22364435 | None:intergenic |
| AATATCAATCATCACATTCT+TGG | 0.288996 | 1_3:+22364303 | Msa0109990:CDS |
| CCTTAGCTTAATCCCTATTT+GGG | 0.304195 | 1_3:+22365728 | Msa0109990:CDS |
| AGAATTATATGAGCTTAGTT+TGG | 0.337781 | 1_3:+22364441 | Msa0109990:CDS |
| CTTCCAACAATGTCAACAAT+TGG | 0.338699 | 1_3:+22359707 | Msa0109990:CDS |
| GGTTATGCTCTTCCAACTCT+TGG | 0.345107 | 1_3:+22364274 | Msa0109990:CDS |
| ATACAAAGAAAGGCAAATTC+AGG | 0.349133 | 1_3:+22364470 | Msa0109990:CDS |
| TGTAATACCTCTAGGATTCT+TGG | 0.350874 | 1_3:-22365943 | None:intergenic |
| ATAGACACAAATTGATTAAA+GGG | 0.352216 | 1_3:+22364341 | Msa0109990:CDS |
| AAAGTTCAAGACATTTAGTA+TGG | 0.373089 | 1_3:-22366348 | None:intergenic |
| AAACCCAACATTTCCACAAT+TGG | 0.377398 | 1_3:+22364106 | Msa0109990:CDS |
| AGGTCATCGTGGCAGCTATA+AGG | 0.378262 | 1_3:+22364386 | Msa0109990:CDS |
| GATTAAGCTAAGGATTTGTT+TGG | 0.378471 | 1_3:-22365718 | None:intergenic |
| TCTTATTCATTAACTACTAC+TGG | 0.380074 | 1_3:+22366197 | Msa0109990:CDS |
| TCATTAACTACTACTGGAAT+TGG | 0.383000 | 1_3:+22366203 | Msa0109990:CDS |
| TACATTGCTGATGCTCATCT+TGG | 0.387824 | 1_3:+22359766 | Msa0109990:CDS |
| ATGCTCATCTTGGACGCTAT+TGG | 0.389843 | 1_3:+22359776 | Msa0109990:CDS |
| GATAATGTGGGTTGGACTCT+TGG | 0.393984 | 1_3:+22364253 | Msa0109990:CDS |
| GTACATGCAGTTAAACTTGC+TGG | 0.397071 | 1_3:-22365852 | None:intergenic |
| GCCACCTAAATGCCATGAAA+TGG | 0.401237 | 1_3:+22363994 | Msa0109990:CDS |
| AGCTTTCCAACCACCTGTCT+TGG | 0.404551 | 1_3:-22358888 | None:intergenic |
| ATATGCTCAATGGAACTTCA+TGG | 0.410778 | 1_3:-22366061 | None:intergenic |
| TATAATTCTTTAGGGTCATC+AGG | 0.411938 | 1_3:-22364427 | None:intergenic |
| TAGGGTCAAAATCGTCAAAC+TGG | 0.418534 | 1_3:-22364135 | None:intergenic |
| TAAATGTAGCAACCCAAATA+GGG | 0.425848 | 1_3:-22365740 | None:intergenic |
| AACCCAATTGTTGACATTGT+TGG | 0.426281 | 1_3:-22359710 | None:intergenic |
| AAAGCTTGCTCATTTCTTGT+TGG | 0.433680 | 1_3:+22358905 | Msa0109990:CDS |
| TTAAGCTCTCATTCTTCAAC+TGG | 0.434643 | 1_3:+22364170 | Msa0109990:CDS |
| GCACCAATTGTGGAAATGTT+GGG | 0.443200 | 1_3:-22364109 | None:intergenic |
| GCAATGGAAGAAGGCATGAT+TGG | 0.445717 | 1_3:+22358809 | None:intergenic |
| TACATTATAGCAGTGGGAAC+AGG | 0.446451 | 1_3:+22364076 | Msa0109990:CDS |
| AGCACCAATTGTGGAAATGT+TGG | 0.449680 | 1_3:-22364110 | None:intergenic |
| AGAGTTAGAAACTTCAGCTC+TGG | 0.456396 | 1_3:-22366405 | None:intergenic |
| GCAATGTAAGCTCCTAATAT+GGG | 0.460307 | 1_3:-22359751 | None:intergenic |
| CATTTAGGTGGCTTTAGGCT+TGG | 0.460828 | 1_3:-22363983 | None:intergenic |
| AAGTCTATGTCTTTCAATCA+TGG | 0.461265 | 1_3:-22366024 | None:intergenic |
| TGTCCACACATGCCTTGTTA+AGG | 0.465658 | 1_3:-22365638 | None:intergenic |
| AATTGTGGAAATGTTGGGTT+TGG | 0.467028 | 1_3:-22364104 | None:intergenic |
| AGCAAAATGAATATGCTCAA+TGG | 0.469591 | 1_3:-22366071 | None:intergenic |
| TTCCAACAATGTCAACAATT+GGG | 0.474000 | 1_3:+22359708 | Msa0109990:CDS |
| GGAAATGAGTACACAAAAGA+TGG | 0.476556 | 1_3:+22358830 | Msa0109990:CDS |
| TCTTTGATGAGTGGCGGAGC+TGG | 0.477484 | 1_3:+22366511 | Msa0109990:three_prime_UTR |
| AGCTCTGGAAACATAGAACT+TGG | 0.480519 | 1_3:-22366390 | None:intergenic |
| TTGGAAGAGTATACAAAGAA+AGG | 0.482322 | 1_3:+22364460 | Msa0109990:CDS |
| TAGGTGGCTTTAGGCTTGGT+AGG | 0.485426 | 1_3:-22363979 | None:intergenic |
| AGTGTATATACAAGATAATG+TGG | 0.488283 | 1_3:+22364240 | Msa0109990:CDS |
| AATATTATGGCAATGGAAGA+AGG | 0.492661 | 1_3:+22358800 | None:intergenic |
| CCAGAAAGCATGAAGAGTCT+TGG | 0.501560 | 1_3:+22366170 | Msa0109990:CDS |
| TCCATTTATTAGCATGGCTA+AGG | 0.503717 | 1_3:+22364366 | Msa0109990:CDS |
| TGAAGAAGTGTAATACCTCT+AGG | 0.507089 | 1_3:-22365951 | None:intergenic |
| AGGGAGTCCATTTATTAGCA+TGG | 0.513040 | 1_3:+22364360 | Msa0109990:CDS |
| ATTTGAGCAATCATTGCACT+TGG | 0.524066 | 1_3:-22365765 | None:intergenic |
| CCCAAATAGGGATTAAGCTA+AGG | 0.524217 | 1_3:-22365728 | None:intergenic |
| AGCTCTCATTCTTCAACTGG+TGG | 0.525929 | 1_3:+22364173 | Msa0109990:CDS |
| TTCTTCAAAGAATGAGTGTA+GGG | 0.530753 | 1_3:+22365967 | Msa0109990:CDS |
| AACAATGTCAACAATTGGGT+TGG | 0.530864 | 1_3:+22359712 | Msa0109990:CDS |
| TCAATCATCACATTCTTGGC+AGG | 0.532239 | 1_3:+22364307 | Msa0109990:CDS |
| GTTCAAGTACTAGTAATGAA+TGG | 0.536165 | 1_3:+22365664 | Msa0109990:CDS |
| AAACTGGTCAGCACCAATTG+TGG | 0.537237 | 1_3:-22364119 | None:intergenic |
| ACAATTTATACTTATGGGAG+TGG | 0.538565 | 1_3:+22366097 | Msa0109990:CDS |
| AGGTGGCTTTAGGCTTGGTA+GGG | 0.557140 | 1_3:-22363978 | None:intergenic |
| ACTGAGAAACATGGTGGTCG+AGG | 0.558387 | 1_3:+22366269 | Msa0109990:CDS |
| GAAAGCAGGTATCAATTGAT+CGG | 0.563143 | 1_3:+22366460 | Msa0109990:exon |
| ATTATAGCAGTGGGAACAGG+TGG | 0.564517 | 1_3:+22364079 | Msa0109990:CDS |
| GATATTGCAAGTCCAAGAGT+TGG | 0.565057 | 1_3:-22364286 | None:intergenic |
| TCCATTTCATGGCATTTAGG+TGG | 0.566798 | 1_3:-22363995 | None:intergenic |
| CTTCTTCAAAGAATGAGTGT+AGG | 0.566874 | 1_3:+22365966 | Msa0109990:CDS |
| TGATGAGTGGCGGAGCTGGA+CGG | 0.578293 | 1_3:+22366515 | Msa0109990:three_prime_UTR |
| CATGTGCAGGTTCCTTAACA+AGG | 0.579095 | 1_3:+22365626 | Msa0109990:intron |
| GTTCCTTAACAAGGCATGTG+TGG | 0.580950 | 1_3:+22365635 | Msa0109990:CDS |
| ACTACTCTTAACAGATCCAT+TGG | 0.582084 | 1_3:+22365813 | Msa0109990:CDS |
| TAGTGATCCAAAGACAATGC+AGG | 0.584586 | 1_3:-22364200 | None:intergenic |
| AGAAACATGGTGGTCGAGGG+TGG | 0.584691 | 1_3:+22366273 | Msa0109990:CDS |
| TCATGTCTACTGCAGTGTAT+GGG | 0.587588 | 1_3:+22359599 | Msa0109990:intron |
| GAACACAACTAGTGTTTGTG+TGG | 0.590211 | 1_3:-22364041 | None:intergenic |
| GATTATGTAAGTGATTATCA+TGG | 0.591566 | 1_3:-22365883 | None:intergenic |
| ATGCACAATAACACAAGTAG+AGG | 0.594066 | 1_3:+22365692 | Msa0109990:CDS |
| TATACTACATCTTTGATGAG+TGG | 0.598729 | 1_3:+22366502 | Msa0109990:three_prime_UTR |
| AATGGATGTTACAAAATGCA+AGG | 0.601334 | 1_3:+22364012 | Msa0109990:CDS |
| AAACTTACAGAGAAGAAAGC+AGG | 0.603559 | 1_3:+22366446 | Msa0109990:CDS |
| TGCACTCTACATTATAGCAG+TGG | 0.606767 | 1_3:+22364069 | Msa0109990:CDS |
| TCAGATCCAAGACAGGTGGT+TGG | 0.608354 | 1_3:+22358882 | Msa0109990:CDS |
| TCTGTTCTCAGATCCAAGAC+AGG | 0.609180 | 1_3:+22358875 | Msa0109990:CDS |
| AACAAGGCATGTGTGGACAC+TGG | 0.610547 | 1_3:+22365642 | Msa0109990:CDS |
| GCACTCTACATTATAGCAGT+GGG | 0.612549 | 1_3:+22364070 | Msa0109990:CDS |
| ATATACAAGATAATGTGGGT+TGG | 0.612837 | 1_3:+22364245 | Msa0109990:CDS |
| ACTACATCTTTGATGAGTGG+CGG | 0.612916 | 1_3:+22366505 | Msa0109990:three_prime_UTR |
| TGAAAGACATAGACTTAGTG+TGG | 0.622321 | 1_3:+22366031 | Msa0109990:CDS |
| GTGTATATACAAGATAATGT+GGG | 0.622346 | 1_3:+22364241 | Msa0109990:CDS |
| CTGAGAAACATGGTGGTCGA+GGG | 0.632880 | 1_3:+22366270 | Msa0109990:CDS |
| ACTCCCATAAGTATAAATTG+TGG | 0.648143 | 1_3:-22366095 | None:intergenic |
| TGGAAGATATGACAGTGCCT+TGG | 0.653184 | 1_3:-22359690 | None:intergenic |
| TCACATGTCACTGAGAAACA+TGG | 0.664134 | 1_3:+22366260 | Msa0109990:CDS |
| ACATACCGATAAATAAACAA+AGG | 0.666237 | 1_3:-22359815 | None:intergenic |
| GTTCTCAGATCCAAGACAGG+TGG | 0.678500 | 1_3:+22358878 | Msa0109990:CDS |
| TTGACAAAGAAGCTTCACCA+AGG | 0.708677 | 1_3:+22359673 | Msa0109990:CDS |
| CATGCAGTTAAACTTGCTGG+AGG | 0.710137 | 1_3:-22365849 | None:intergenic |
| AAGTTGACCAAGAATCCTAG+AGG | 0.716009 | 1_3:+22365936 | Msa0109990:CDS |
| TAGCATGGCTAAGGTCATCG+TGG | 0.731040 | 1_3:+22364375 | Msa0109990:CDS |
| TTATAGCAGTGGGAACAGGT+GGG | 0.731594 | 1_3:+22364080 | Msa0109990:CDS |
| CATGTCACTGAGAAACATGG+TGG | 0.747015 | 1_3:+22366263 | Msa0109990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr1_3:22359022-22359041 | None:intergenic | 0.0% |
| !! | AAAATAAATATATTTAAAAA+GGG | + | chr1_3:22362284-22362303 | Msa0109990:intron | 0.0% |
| !! | AAAATATGTTAATTATACTA+AGG | - | chr1_3:22359105-22359124 | None:intergenic | 10.0% |
| !!! | ACTAAATTTTTAAAAGAAAA+AGG | + | chr1_3:22360047-22360066 | Msa0109990:intron | 10.0% |
| !! | ATATTAATTCATACTTAAAT+AGG | + | chr1_3:22360214-22360233 | Msa0109990:intron | 10.0% |
| !!! | TAATTTTTTCAATGAATATA+GGG | - | chr1_3:22360641-22360660 | None:intergenic | 10.0% |
| !!! | ATAATTTTTTCAATGAATAT+AGG | - | chr1_3:22360642-22360661 | None:intergenic | 10.0% |
| !!! | AATTTTATTCTAACTTTTAT+TGG | + | chr1_3:22360718-22360737 | Msa0109990:intron | 10.0% |
| !!! | TTTTTAGTAATATTGATTTA+AGG | + | chr1_3:22361114-22361133 | Msa0109990:intron | 10.0% |
| !! | ATTGAAAAAAAAAACAAATT+TGG | + | chr1_3:22361222-22361241 | Msa0109990:intron | 10.0% |
| !!! | TTTTTTATATCTATATATAG+GGG | - | chr1_3:22361422-22361441 | None:intergenic | 10.0% |
| !! | ACATTATATCAATTAAAAAA+GGG | + | chr1_3:22361475-22361494 | Msa0109990:intron | 10.0% |
| !!! | AGAAAAATAATATTTAAGAT+AGG | + | chr1_3:22361762-22361781 | Msa0109990:intron | 10.0% |
| !!! | AAGGTTTTTTTTTTTTTTTT+TGG | - | chr1_3:22362000-22362019 | None:intergenic | 10.0% |
| !! | TAAAATTATATTTATGGAAA+AGG | - | chr1_3:22362050-22362069 | None:intergenic | 10.0% |
| !! | TACTTTATTATTATATATAG+TGG | - | chr1_3:22362508-22362527 | None:intergenic | 10.0% |
| !!! | AGATACTTATAAATTTTATA+TGG | - | chr1_3:22362609-22362628 | None:intergenic | 10.0% |
| !!! | AATATATGTATTTTCTAAAA+CGG | - | chr1_3:22362988-22363007 | None:intergenic | 10.0% |
| !! | AAAATAAATAATAGTGAATA+AGG | + | chr1_3:22363097-22363116 | Msa0109990:intron | 10.0% |
| !! | AAATAAATAATAGTGAATAA+GGG | + | chr1_3:22363098-22363117 | Msa0109990:intron | 10.0% |
| !! | TAAATTATTATAAAGGAAAT+AGG | - | chr1_3:22363910-22363929 | None:intergenic | 10.0% |
| !!! | TATAATATTTTGAATTTTTC+TGG | + | chr1_3:22364903-22364922 | Msa0109990:intron | 10.0% |
| !! | ATAAAAAATAAGAGACATTA+TGG | + | chr1_3:22359215-22359234 | Msa0109990:intron | 15.0% |
| !!! | AAGATAAAATTTTAGATTAG+AGG | - | chr1_3:22359414-22359433 | None:intergenic | 15.0% |
| !! | AATTAACAATTCAATTCAAT+GGG | - | chr1_3:22359565-22359584 | None:intergenic | 15.0% |
| !! | AAATTAACAATTCAATTCAA+TGG | - | chr1_3:22359566-22359585 | None:intergenic | 15.0% |
| !!! | TGGATAAATAATATAGTTTT+TGG | + | chr1_3:22360300-22360319 | Msa0109990:intron | 15.0% |
| !!! | ATAAATAATATAGTTTTTGG+TGG | + | chr1_3:22360303-22360322 | Msa0109990:intron | 15.0% |
| !! | ATATATGATTAAATAAACCT+GGG | - | chr1_3:22360840-22360859 | None:intergenic | 15.0% |
| !! | TATATATGATTAAATAAACC+TGG | - | chr1_3:22360841-22360860 | None:intergenic | 15.0% |
| !! | TTAATCATATATAGACATTA+TGG | + | chr1_3:22360848-22360867 | Msa0109990:intron | 15.0% |
| !!! | TCTAATTTTAAGTTAGAATT+GGG | - | chr1_3:22360974-22360993 | None:intergenic | 15.0% |
| !!! | ATCTAATTTTAAGTTAGAAT+TGG | - | chr1_3:22360975-22360994 | None:intergenic | 15.0% |
| !!! | TTTTTATATCTATATATAGG+GGG | - | chr1_3:22361421-22361440 | None:intergenic | 15.0% |
| !! | CACATTATATCAATTAAAAA+AGG | + | chr1_3:22361474-22361493 | Msa0109990:intron | 15.0% |
| !! | AAAAATAATAGAAAAGTAGT+AGG | + | chr1_3:22361806-22361825 | Msa0109990:intron | 15.0% |
| !!! | GTTTTTTTTTTTTTTTTTGG+TGG | - | chr1_3:22361997-22362016 | None:intergenic | 15.0% |
| !! | GATCACTAAAATTATATTTA+TGG | - | chr1_3:22362056-22362075 | None:intergenic | 15.0% |
| !! | TATAAACTTGATAAAAGATA+TGG | + | chr1_3:22362217-22362236 | Msa0109990:intron | 15.0% |
| !! | AAATTATAACTTATGAGTTA+TGG | + | chr1_3:22362750-22362769 | Msa0109990:intron | 15.0% |
| !! | GTAAAAAAATAGTAGTTTAA+AGG | + | chr1_3:22362777-22362796 | Msa0109990:intron | 15.0% |
| !!! | GACTTTTTAATTAAATGTAT+TGG | - | chr1_3:22363815-22363834 | None:intergenic | 15.0% |
| !!! | AATTTATTAGTTTTGGTTAT+TGG | + | chr1_3:22363924-22363943 | Msa0109990:intron | 15.0% |
| !! | GAAAAAATTGACATATTTAT+AGG | - | chr1_3:22364613-22364632 | None:intergenic | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | - | chr1_3:22364673-22364692 | None:intergenic | 15.0% |
| !!! | TAAAAGAGATATATAGTTTT+GGG | - | chr1_3:22365090-22365109 | None:intergenic | 15.0% |
| !!! | ATAAAAGAGATATATAGTTT+TGG | - | chr1_3:22365091-22365110 | None:intergenic | 15.0% |
| !! | TAAAAAAACAAAAATTAGTG+AGG | + | chr1_3:22365231-22365250 | Msa0109990:intron | 15.0% |
| !! | AAAAAAACAAAAATTAGTGA+GGG | + | chr1_3:22365232-22365251 | Msa0109990:intron | 15.0% |
| !! | TTCACTAGAAAAATGTTATT+CGG | + | chr1_3:22358964-22358983 | Msa0109990:intron | 20.0% |
| !! | ATTGTAAAGATTATAATCCA+CGG | - | chr1_3:22359197-22359216 | None:intergenic | 20.0% |
| !! | TTTACCAACAAAGAAAATAA+TGG | + | chr1_3:22359432-22359451 | Msa0109990:intron | 20.0% |
| !! | AAACTTATCAACAACATATA+AGG | - | chr1_3:22359520-22359539 | None:intergenic | 20.0% |
| !!! | TTTGAAAGAATTGCTTATTT+TGG | + | chr1_3:22359625-22359644 | Msa0109990:CDS | 20.0% |
| !!! | GATCATTTTCTTATAAAAAC+TGG | - | chr1_3:22359899-22359918 | None:intergenic | 20.0% |
| !! | AGATTCGTGTAAATATTATA+TGG | + | chr1_3:22360280-22360299 | Msa0109990:intron | 20.0% |
| !! | GTGAATATTATTCATAAGAA+AGG | + | chr1_3:22360502-22360521 | Msa0109990:intron | 20.0% |
| !! | CATTGAAAAAATTATCCTTA+TGG | + | chr1_3:22360647-22360666 | Msa0109990:intron | 20.0% |
| !! | TAAGTTAATTTATCACCATA+AGG | - | chr1_3:22360665-22360684 | None:intergenic | 20.0% |
| !! | GAATAAAATTTCAGAAATAG+AGG | - | chr1_3:22360708-22360727 | None:intergenic | 20.0% |
| !! | TAGACATTATGGAATAATAA+AGG | + | chr1_3:22360859-22360878 | Msa0109990:intron | 20.0% |
| !! | AGACATTATGGAATAATAAA+GGG | + | chr1_3:22360860-22360879 | Msa0109990:intron | 20.0% |
| !! | ATTATTAGATAGAATAAGAG+TGG | + | chr1_3:22360929-22360948 | Msa0109990:intron | 20.0% |
| !! | TAAAAAAGGGCTAAAATATT+TGG | + | chr1_3:22361488-22361507 | Msa0109990:intron | 20.0% |
| !! | AAATGTTTGTAGTATATGTT+AGG | - | chr1_3:22361663-22361682 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTTTTGGTGG+TGG | - | chr1_3:22361994-22362013 | None:intergenic | 20.0% |
| !!! | TACTATTTTTCATGTTAATG+AGG | - | chr1_3:22362408-22362427 | None:intergenic | 20.0% |
| !!! | AGTATCTTCTAATTTTTTTG+TGG | + | chr1_3:22362622-22362641 | Msa0109990:intron | 20.0% |
| !!! | TAATTTTTTTGTGGAGAAAA+TGG | + | chr1_3:22362631-22362650 | Msa0109990:intron | 20.0% |
| !!! | TAATGTGTAACTTTTATTCT+TGG | + | chr1_3:22362868-22362887 | Msa0109990:intron | 20.0% |
| !!! | CATACATTAAATTGATTTAG+TGG | + | chr1_3:22363074-22363093 | Msa0109990:intron | 20.0% |
| !! | TAAAGCATATTTGATATATC+TGG | + | chr1_3:22363447-22363466 | Msa0109990:intron | 20.0% |
| !! | TAAAATAACAATGAGAGAAT+GGG | + | chr1_3:22363545-22363564 | Msa0109990:intron | 20.0% |
| !! | TCACGAAAACATAATAATAA+GGG | + | chr1_3:22363733-22363752 | Msa0109990:intron | 20.0% |
| !! | ATCAATTTGTGTCTATAAAA+AGG | - | chr1_3:22364337-22364356 | None:intergenic | 20.0% |
| !! | TATAGACACAAATTGATTAA+AGG | + | chr1_3:22364340-22364359 | Msa0109990:CDS | 20.0% |
| !! | ATAGACACAAATTGATTAAA+GGG | + | chr1_3:22364341-22364360 | Msa0109990:CDS | 20.0% |
| !! | TAAGCTCATATAATTCTTTA+GGG | - | chr1_3:22364438-22364457 | None:intergenic | 20.0% |
| !!! | TATAGGGTTAAATATGTTTT+TGG | + | chr1_3:22364585-22364604 | Msa0109990:intron | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | - | chr1_3:22364674-22364693 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | + | chr1_3:22364677-22364696 | Msa0109990:intron | 20.0% |
| !!! | AAATTTTCAATCTTCACTTT+TGG | - | chr1_3:22364983-22365002 | None:intergenic | 20.0% |
| !!! | AAGTTGAAGTAAAATTTTAG+AGG | + | chr1_3:22365015-22365034 | Msa0109990:intron | 20.0% |
| !!! | AGTTGAAGTAAAATTTTAGA+GGG | + | chr1_3:22365016-22365035 | Msa0109990:intron | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | + | chr1_3:22365047-22365066 | Msa0109990:intron | 20.0% |
| ! | ATTTGTAAGCAAAAACCTTA+AGG | + | chr1_3:22359267-22359286 | Msa0109990:intron | 25.0% |
| ! | TTACACTCTATAAGAGTAAA+TGG | - | chr1_3:22359332-22359351 | None:intergenic | 25.0% |
| !! | ATGACCATTATTTTCTTTGT+TGG | - | chr1_3:22359439-22359458 | None:intergenic | 25.0% |
| !! | TTCTGCCTTTGTTTATTTAT+CGG | + | chr1_3:22359810-22359829 | Msa0109990:CDS | 25.0% |
| ! | ACATACCGATAAATAAACAA+AGG | - | chr1_3:22359818-22359837 | None:intergenic | 25.0% |
| !! | CATTTTCTTATAAAAACTGG+AGG | - | chr1_3:22359896-22359915 | None:intergenic | 25.0% |
| ! | TTTAGTTATAACCCTTTATC+CGG | - | chr1_3:22360033-22360052 | None:intergenic | 25.0% |
| ! | GGTTAAACTATGTAATTACT+AGG | + | chr1_3:22360068-22360087 | Msa0109990:intron | 25.0% |
| ! | ATTCATTTATGATATCGTAG+TGG | + | chr1_3:22360393-22360412 | Msa0109990:intron | 25.0% |
| ! | GAACGTAAAAGTAAATAGTT+AGG | - | chr1_3:22360599-22360618 | None:intergenic | 25.0% |
| !!! | GTCCAAATTATTTTAGACAA+CGG | + | chr1_3:22360740-22360759 | Msa0109990:intron | 25.0% |
| !! | AACCGTTGTCTAAAATAATT+TGG | - | chr1_3:22360745-22360764 | None:intergenic | 25.0% |
| !! | TTCATTTAAGTTAGTGTCTT+GGG | - | chr1_3:22361026-22361045 | None:intergenic | 25.0% |
| !! | ATTCATTTAAGTTAGTGTCT+TGG | - | chr1_3:22361027-22361046 | None:intergenic | 25.0% |
| ! | AGATGAAGTGTAAAAAATAG+AGG | + | chr1_3:22361566-22361585 | Msa0109990:intron | 25.0% |
| !! | CATAATATATGCAAGGTTTT+GGG | + | chr1_3:22361956-22361975 | Msa0109990:intron | 25.0% |
| ! | GTTGATTAAAGGTTAATGAA+AGG | - | chr1_3:22362019-22362038 | None:intergenic | 25.0% |
| ! | AGGTAAAAACAGTTGATTAA+AGG | - | chr1_3:22362030-22362049 | None:intergenic | 25.0% |
| !! | TGTTTTGTACATTATGTTTC+TGG | - | chr1_3:22362682-22362701 | None:intergenic | 25.0% |
| ! | ATTTATACACACAAAGATGA+TGG | + | chr1_3:22362705-22362724 | Msa0109990:intron | 25.0% |
| ! | AAAGGTTAATGAGTTAAAGT+TGG | + | chr1_3:22362795-22362814 | Msa0109990:intron | 25.0% |
| ! | AAAAAAAAACGTCACTTCAA+AGG | - | chr1_3:22362938-22362957 | None:intergenic | 25.0% |
| ! | TTATGCATAAGTCAAAAGAA+TGG | + | chr1_3:22363011-22363030 | Msa0109990:intron | 25.0% |
| ! | GTCTTATATCCTAACAATAA+AGG | - | chr1_3:22363398-22363417 | None:intergenic | 25.0% |
| ! | TTATGATTTAGGTGATTCTT+AGG | - | chr1_3:22363509-22363528 | None:intergenic | 25.0% |
| ! | GTGAAAGTAGTTTATGATTT+AGG | - | chr1_3:22363520-22363539 | None:intergenic | 25.0% |
| ! | GTAAAATAACAATGAGAGAA+TGG | + | chr1_3:22363544-22363563 | Msa0109990:intron | 25.0% |
| ! | AAAATAACAATGAGAGAATG+GGG | + | chr1_3:22363546-22363565 | Msa0109990:intron | 25.0% |
| ! | ACATATCTTGCTTAGTATAT+TGG | + | chr1_3:22363614-22363633 | Msa0109990:intron | 25.0% |
| !! | TTGGATAAGGTCTTATAATA+AGG | + | chr1_3:22363633-22363652 | Msa0109990:intron | 25.0% |
| !! | TGGATAAGGTCTTATAATAA+GGG | + | chr1_3:22363634-22363653 | Msa0109990:intron | 25.0% |
| ! | CTCACGAAAACATAATAATA+AGG | + | chr1_3:22363732-22363751 | Msa0109990:intron | 25.0% |
| ! | GTGTGTATTTAATGTATTGA+AGG | - | chr1_3:22363849-22363868 | None:intergenic | 25.0% |
| !! | ATTTTGTAACATCCATTTCA+TGG | - | chr1_3:22364009-22364028 | None:intergenic | 25.0% |
| !! | GCTTAAGTGATTTTTCTTTA+GGG | - | chr1_3:22364156-22364175 | None:intergenic | 25.0% |
| !! | AGCTTAAGTGATTTTTCTTT+AGG | - | chr1_3:22364157-22364176 | None:intergenic | 25.0% |
| ! | AGTGTATATACAAGATAATG+TGG | + | chr1_3:22364240-22364259 | Msa0109990:CDS | 25.0% |
| ! | GTGTATATACAAGATAATGT+GGG | + | chr1_3:22364241-22364260 | Msa0109990:CDS | 25.0% |
| ! | AATATCAATCATCACATTCT+TGG | + | chr1_3:22364303-22364322 | Msa0109990:CDS | 25.0% |
| ! | CTAAGCTCATATAATTCTTT+AGG | - | chr1_3:22364439-22364458 | None:intergenic | 25.0% |
| ! | AGAATTATATGAGCTTAGTT+TGG | + | chr1_3:22364441-22364460 | Msa0109990:CDS | 25.0% |
| ! | AACACTCTTTCAAAAACTAT+AGG | + | chr1_3:22364568-22364587 | Msa0109990:intron | 25.0% |
| ! | ACACTCTTTCAAAAACTATA+GGG | + | chr1_3:22364569-22364588 | Msa0109990:intron | 25.0% |
| !!! | TGTTGAAGGAAATTTTTAGA+GGG | - | chr1_3:22364644-22364663 | None:intergenic | 25.0% |
| !!! | ATGTTGAAGGAAATTTTTAG+AGG | - | chr1_3:22364645-22364664 | None:intergenic | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | + | chr1_3:22365046-22365065 | Msa0109990:intron | 25.0% |
| ! | AGAAAAAGCAAAATTAGAGA+GGG | - | chr1_3:22365358-22365377 | None:intergenic | 25.0% |
| ! | TAGAAAAAGCAAAATTAGAG+AGG | - | chr1_3:22365359-22365378 | None:intergenic | 25.0% |
| !!! | AATGGTAGATGTTCTTTTTT+TGG | - | chr1_3:22365392-22365411 | None:intergenic | 25.0% |
| !! | AATACCCTTTTCATAAAACA+AGG | + | chr1_3:22365789-22365808 | Msa0109990:CDS | 25.0% |
| !!! | AGTTCCTTGTTTTATGAAAA+GGG | - | chr1_3:22365796-22365815 | None:intergenic | 25.0% |
| !!! | TAGTTCCTTGTTTTATGAAA+AGG | - | chr1_3:22365797-22365816 | None:intergenic | 25.0% |
| ! | GATTATGTAAGTGATTATCA+TGG | - | chr1_3:22365886-22365905 | None:intergenic | 25.0% |
| ! | CTACCACAATTTATACTTAT+GGG | + | chr1_3:22366092-22366111 | Msa0109990:CDS | 25.0% |
| ! | TCTTATTCATTAACTACTAC+TGG | + | chr1_3:22366197-22366216 | Msa0109990:CDS | 25.0% |
| !! | TGATTACTACTATGCATTTT+TGG | + | chr1_3:22366325-22366344 | Msa0109990:CDS | 25.0% |
| ! | AAAGTTCAAGACATTTAGTA+TGG | - | chr1_3:22366351-22366370 | None:intergenic | 25.0% |
| GATGGAACTATTGATCTTAA+AGG | + | chr1_3:22358848-22358867 | Msa0109990:CDS | 30.0% | |
| AGGTAGATTAAATTGTACAG+TGG | - | chr1_3:22359002-22359021 | None:intergenic | 30.0% | |
| !!! | ACCAATTTCGGCATTTTTTT+CGG | - | chr1_3:22359153-22359172 | None:intergenic | 30.0% |
| AAAAAAATGCCGAAATTGGT+TGG | + | chr1_3:22359153-22359172 | Msa0109990:intron | 30.0% | |
| TTGATCATCTTAAGCAAAGT+TGG | - | chr1_3:22359475-22359494 | None:intergenic | 30.0% | |
| ATTCAATTCAATGGGTAGTA+TGG | - | chr1_3:22359557-22359576 | None:intergenic | 30.0% | |
| TTCCAACAATGTCAACAATT+GGG | + | chr1_3:22359708-22359727 | Msa0109990:CDS | 30.0% | |
| ! | GTTTTTATGACTCCCATATT+AGG | + | chr1_3:22359739-22359758 | Msa0109990:CDS | 30.0% |
| GTGAGATTATATTTACCTCA+TGG | - | chr1_3:22359941-22359960 | None:intergenic | 30.0% | |
| TTAGTTATAACCCTTTATCC+GGG | - | chr1_3:22360032-22360051 | None:intergenic | 30.0% | |
| ! | GGTTGCAATAAATTCAAGTT+AGG | + | chr1_3:22360523-22360542 | Msa0109990:intron | 30.0% |
| TTGCGAAATTTCAAAGAACA+TGG | - | chr1_3:22360571-22360590 | None:intergenic | 30.0% | |
| TTCAGAAATAGAGGTTTGAT+AGG | - | chr1_3:22360699-22360718 | None:intergenic | 30.0% | |
| CTGGGAACATAAACATTAAT+TGG | - | chr1_3:22360822-22360841 | None:intergenic | 30.0% | |
| CAATTAATGTTTATGTTCCC+AGG | + | chr1_3:22360820-22360839 | Msa0109990:intron | 30.0% | |
| ! | TTTTCTATATTCACTTGACG+AGG | - | chr1_3:22361310-22361329 | None:intergenic | 30.0% |
| TACTTTCTCAAAGCAACTAT+TGG | - | chr1_3:22361627-22361646 | None:intergenic | 30.0% | |
| TTTGACAGAAGGTTAATGAA+AGG | - | chr1_3:22361894-22361913 | None:intergenic | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr1_3:22361949-22361968 | Msa0109990:intron | 30.0% | |
| ! | GCATAATATATGCAAGGTTT+TGG | + | chr1_3:22361955-22361974 | Msa0109990:intron | 30.0% |
| !!! | TTTTTTTTTTTGGTGGTGGT+CGG | - | chr1_3:22361990-22362009 | None:intergenic | 30.0% |
| TGCTCACAAAGTATATGAAA+TGG | - | chr1_3:22362337-22362356 | None:intergenic | 30.0% | |
| TTCATGTTAATGAGGAAAAG+AGG | - | chr1_3:22362400-22362419 | None:intergenic | 30.0% | |
| !!! | CTGGCATAAGTTTTGATTTT+GGG | - | chr1_3:22362663-22362682 | None:intergenic | 30.0% |
| !!! | TCTGGCATAAGTTTTGATTT+TGG | - | chr1_3:22362664-22362683 | None:intergenic | 30.0% |
| AGTGTGATAGAATTTAGATG+TGG | - | chr1_3:22363357-22363376 | None:intergenic | 30.0% | |
| CATGTTAGTCCTTTATTGTT+AGG | + | chr1_3:22363386-22363405 | Msa0109990:intron | 30.0% | |
| CTTGCTTAGTATATTGGATA+AGG | + | chr1_3:22363620-22363639 | Msa0109990:intron | 30.0% | |
| ! | AATAAGGGTTTTCTTTGTGA+TGG | + | chr1_3:22363649-22363668 | Msa0109990:intron | 30.0% |
| GACAATGCATAAAATATGCA+AGG | - | chr1_3:22363694-22363713 | None:intergenic | 30.0% | |
| !!! | TATTAGTTTTGGTTATTGGC+AGG | + | chr1_3:22363928-22363947 | Msa0109990:intron | 30.0% |
| !!! | ATTAGTTTTGGTTATTGGCA+GGG | + | chr1_3:22363929-22363948 | Msa0109990:intron | 30.0% |
| AATGGATGTTACAAAATGCA+AGG | + | chr1_3:22364012-22364031 | Msa0109990:CDS | 30.0% | |
| ATATACAAGATAATGTGGGT+TGG | + | chr1_3:22364245-22364264 | Msa0109990:CDS | 30.0% | |
| !! | TATAATTCTTTAGGGTCATC+AGG | - | chr1_3:22364430-22364449 | None:intergenic | 30.0% |
| ! | TTGGAAGAGTATACAAAGAA+AGG | + | chr1_3:22364460-22364479 | Msa0109990:CDS | 30.0% |
| ATACAAAGAAAGGCAAATTC+AGG | + | chr1_3:22364470-22364489 | Msa0109990:CDS | 30.0% | |
| TGATCAAGTAAAAGTGAGTA+CGG | - | chr1_3:22364533-22364552 | None:intergenic | 30.0% | |
| ! | CTTGATCATGTGATTTTACA+AGG | + | chr1_3:22364545-22364564 | Msa0109990:intron | 30.0% |
| TTATAGGGACTAAATGTTGA+AGG | - | chr1_3:22364658-22364677 | None:intergenic | 30.0% | |
| ! | TTGTCACGTCACTTTAATAT+AGG | + | chr1_3:22365127-22365146 | Msa0109990:intron | 30.0% |
| AAAATCCCTCATAAGTTTCT+TGG | - | chr1_3:22365315-22365334 | None:intergenic | 30.0% | |
| GTTCAAGTACTAGTAATGAA+TGG | + | chr1_3:22365664-22365683 | Msa0109990:CDS | 30.0% | |
| ! | GATTAAGCTAAGGATTTGTT+TGG | - | chr1_3:22365721-22365740 | None:intergenic | 30.0% |
| TAAATGTAGCAACCCAAATA+GGG | - | chr1_3:22365743-22365762 | None:intergenic | 30.0% | |
| ATAAATGTAGCAACCCAAAT+AGG | - | chr1_3:22365744-22365763 | None:intergenic | 30.0% | |
| TTCTTCAAAGAATGAGTGTA+GGG | + | chr1_3:22365967-22365986 | Msa0109990:CDS | 30.0% | |
| AAGTCTATGTCTTTCAATCA+TGG | - | chr1_3:22366027-22366046 | None:intergenic | 30.0% | |
| AGCAAAATGAATATGCTCAA+TGG | - | chr1_3:22366074-22366093 | None:intergenic | 30.0% | |
| GCTACCACAATTTATACTTA+TGG | + | chr1_3:22366091-22366110 | Msa0109990:CDS | 30.0% | |
| ACTCCCATAAGTATAAATTG+TGG | - | chr1_3:22366098-22366117 | None:intergenic | 30.0% | |
| ACAATTTATACTTATGGGAG+TGG | + | chr1_3:22366097-22366116 | Msa0109990:CDS | 30.0% | |
| TCATTAACTACTACTGGAAT+TGG | + | chr1_3:22366203-22366222 | Msa0109990:CDS | 30.0% | |
| ! | TCTAACTCTCTAAAAGTTCT+TGG | + | chr1_3:22366419-22366438 | Msa0109990:CDS | 30.0% |
| TATACTACATCTTTGATGAG+TGG | + | chr1_3:22366502-22366521 | Msa0109990:three_prime_UTR | 30.0% | |
| GGAAATGAGTACACAAAAGA+TGG | + | chr1_3:22358830-22358849 | Msa0109990:CDS | 35.0% | |
| ! | AAAGCTTGCTCATTTCTTGT+TGG | + | chr1_3:22358905-22358924 | Msa0109990:CDS | 35.0% |
| TTTCTCTCTCACACACTTTA+TGG | + | chr1_3:22358933-22358952 | Msa0109990:intron | 35.0% | |
| !!! | GCATTTTTTTCGGTTGAGTT+AGG | - | chr1_3:22359143-22359162 | None:intergenic | 35.0% |
| ACCGAAAAAAATGCCGAAAT+TGG | + | chr1_3:22359149-22359168 | Msa0109990:intron | 35.0% | |
| AAACCTTAAGGAGACATTTG+AGG | + | chr1_3:22359279-22359298 | Msa0109990:intron | 35.0% | |
| TTAAGGAGACATTTGAGGAT+GGG | + | chr1_3:22359284-22359303 | Msa0109990:intron | 35.0% | |
| ATGATCAAAGCATGCTCATT+AGG | + | chr1_3:22359487-22359506 | Msa0109990:intron | 35.0% | |
| CTTCCAACAATGTCAACAAT+TGG | + | chr1_3:22359707-22359726 | Msa0109990:CDS | 35.0% | |
| AACCCAATTGTTGACATTGT+TGG | - | chr1_3:22359713-22359732 | None:intergenic | 35.0% | |
| AACAATGTCAACAATTGGGT+TGG | + | chr1_3:22359712-22359731 | Msa0109990:CDS | 35.0% | |
| GCAATGTAAGCTCCTAATAT+GGG | - | chr1_3:22359754-22359773 | None:intergenic | 35.0% | |
| AGCAATGTAAGCTCCTAATA+TGG | - | chr1_3:22359755-22359774 | None:intergenic | 35.0% | |
| TGGTCGAACTCTGTATTATA+AGG | - | chr1_3:22359921-22359940 | None:intergenic | 35.0% | |
| TATTGAAACACCTAAGCCAA+TGG | + | chr1_3:22359996-22360015 | Msa0109990:intron | 35.0% | |
| GGGCACTTTAACAAAGAAAT+AGG | - | chr1_3:22360621-22360640 | None:intergenic | 35.0% | |
| AATTGAGCAATGTGACAAGA+AGG | - | chr1_3:22360775-22360794 | None:intergenic | 35.0% | |
| TGAGTAACTGATCATGGTTA+TGG | + | chr1_3:22361720-22361739 | Msa0109990:intron | 35.0% | |
| TGGTTATGGAATAAGAGTCA+AGG | + | chr1_3:22361734-22361753 | Msa0109990:intron | 35.0% | |
| !!! | AGGACTTTTGTTTTGACAGA+AGG | - | chr1_3:22361905-22361924 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTTGGTGGTGGTC+GGG | - | chr1_3:22361989-22362008 | None:intergenic | 35.0% |
| ATTTGCTTTCATTGCATCCT+TGG | - | chr1_3:22362360-22362379 | None:intergenic | 35.0% | |
| !! | TACACACAAAGATGATGGAT+TGG | + | chr1_3:22362710-22362729 | Msa0109990:intron | 35.0% |
| ATAAGGGTGATAGTTAAGAG+TGG | + | chr1_3:22363114-22363133 | Msa0109990:intron | 35.0% | |
| TAAGGGTGATAGTTAAGAGT+GGG | + | chr1_3:22363115-22363134 | Msa0109990:intron | 35.0% | |
| TGAGAAATTGAAGCGCATAT+AGG | + | chr1_3:22363159-22363178 | Msa0109990:intron | 35.0% | |
| TGCATAAAATATGCAAGGTC+CGG | - | chr1_3:22363689-22363708 | None:intergenic | 35.0% | |
| !! | TTTTGCTAACGAGTGTTGTA+AGG | + | chr1_3:22363756-22363775 | Msa0109990:intron | 35.0% |
| ACATCCATTTCATGGCATTT+AGG | - | chr1_3:22364001-22364020 | None:intergenic | 35.0% | |
| AATTGTGGAAATGTTGGGTT+TGG | - | chr1_3:22364107-22364126 | None:intergenic | 35.0% | |
| AAACCCAACATTTCCACAAT+TGG | + | chr1_3:22364106-22364125 | Msa0109990:CDS | 35.0% | |
| TTAAGCTCTCATTCTTCAAC+TGG | + | chr1_3:22364170-22364189 | Msa0109990:CDS | 35.0% | |
| TCCATTTATTAGCATGGCTA+AGG | + | chr1_3:22364366-22364385 | Msa0109990:CDS | 35.0% | |
| ACCTTAGCCATGCTAATAAA+TGG | - | chr1_3:22364370-22364389 | None:intergenic | 35.0% | |
| ACTCAGAATGAAATTCATGC+AGG | - | chr1_3:22365175-22365194 | None:intergenic | 35.0% | |
| TTAGTGAGGGAAATTTAGTG+AGG | + | chr1_3:22365245-22365264 | Msa0109990:intron | 35.0% | |
| TAGTGAGGGAAATTTAGTGA+GGG | + | chr1_3:22365246-22365265 | Msa0109990:intron | 35.0% | |
| ! | TTTAGTGACGGAATTTGAGA+GGG | - | chr1_3:22365284-22365303 | None:intergenic | 35.0% |
| ! | ATTTAGTGACGGAATTTGAG+AGG | - | chr1_3:22365285-22365304 | None:intergenic | 35.0% |
| TTGGTCGCAAAATTTAGTGA+CGG | - | chr1_3:22365296-22365315 | None:intergenic | 35.0% | |
| TTAGAGAGGGAAATTAGTGA+CGG | - | chr1_3:22365345-22365364 | None:intergenic | 35.0% | |
| ! | AGAACATCTACCATTTTGCT+TGG | + | chr1_3:22365397-22365416 | Msa0109990:intron | 35.0% |
| ! | TCTTGTTTGTATACATGTGC+AGG | + | chr1_3:22365613-22365632 | Msa0109990:intron | 35.0% |
| ATGCACAATAACACAAGTAG+AGG | + | chr1_3:22365692-22365711 | Msa0109990:CDS | 35.0% | |
| TCCTTAGCTTAATCCCTATT+TGG | + | chr1_3:22365727-22365746 | Msa0109990:CDS | 35.0% | |
| CCTTAGCTTAATCCCTATTT+GGG | + | chr1_3:22365728-22365747 | Msa0109990:CDS | 35.0% | |
| ATTTGAGCAATCATTGCACT+TGG | - | chr1_3:22365768-22365787 | None:intergenic | 35.0% | |
| ACTACTCTTAACAGATCCAT+TGG | + | chr1_3:22365813-22365832 | Msa0109990:CDS | 35.0% | |
| !!! | AGGAACTTTTAAGTTGCCAA+TGG | - | chr1_3:22365832-22365851 | None:intergenic | 35.0% |
| !! | TGTAATACCTCTAGGATTCT+TGG | - | chr1_3:22365946-22365965 | None:intergenic | 35.0% |
| ! | TGAAGAAGTGTAATACCTCT+AGG | - | chr1_3:22365954-22365973 | None:intergenic | 35.0% |
| CTTCTTCAAAGAATGAGTGT+AGG | + | chr1_3:22365966-22365985 | Msa0109990:CDS | 35.0% | |
| TGAAAGACATAGACTTAGTG+TGG | + | chr1_3:22366031-22366050 | Msa0109990:CDS | 35.0% | |
| ! | CAATGGAACTTCATGGTTTT+TGG | - | chr1_3:22366057-22366076 | None:intergenic | 35.0% |
| ATATGCTCAATGGAACTTCA+TGG | - | chr1_3:22366064-22366083 | None:intergenic | 35.0% | |
| !! | ACTTTTAGAGGGTGCAAAAA+TGG | + | chr1_3:22366127-22366146 | Msa0109990:CDS | 35.0% |
| CTTGAACTTTGTCTTCTTTG+TGG | + | chr1_3:22366361-22366380 | Msa0109990:CDS | 35.0% | |
| AAACTTACAGAGAAGAAAGC+AGG | + | chr1_3:22366446-22366465 | Msa0109990:CDS | 35.0% | |
| GAAAGCAGGTATCAATTGAT+CGG | + | chr1_3:22366460-22366479 | Msa0109990:exon | 35.0% | |
| !! | TTTTTCGGTTGAGTTAGGAC+AGG | - | chr1_3:22359138-22359157 | None:intergenic | 40.0% |
| AAATGCCGAAATTGGTTGGT+CGG | + | chr1_3:22359157-22359176 | Msa0109990:intron | 40.0% | |
| TATGACCGACCAACCAATTT+CGG | - | chr1_3:22359165-22359184 | None:intergenic | 40.0% | |
| CATCCTCAAATGTCTCCTTA+AGG | - | chr1_3:22359285-22359304 | None:intergenic | 40.0% | |
| CTTAAGGAGACATTTGAGGA+TGG | + | chr1_3:22359283-22359302 | Msa0109990:intron | 40.0% | |
| TTCATGTCTACTGCAGTGTA+TGG | + | chr1_3:22359598-22359617 | Msa0109990:intron | 40.0% | |
| TCATGTCTACTGCAGTGTAT+GGG | + | chr1_3:22359599-22359618 | Msa0109990:intron | 40.0% | |
| TTGACAAAGAAGCTTCACCA+AGG | + | chr1_3:22359673-22359692 | Msa0109990:CDS | 40.0% | |
| TACATTGCTGATGCTCATCT+TGG | + | chr1_3:22359766-22359785 | Msa0109990:CDS | 40.0% | |
| TAATACAGAGTTCGACCATG+AGG | + | chr1_3:22359923-22359942 | Msa0109990:intron | 40.0% | |
| AGGGGGTTGAATGCAAAATA+AGG | - | chr1_3:22361404-22361423 | None:intergenic | 40.0% | |
| CATGAGTGAGTAACTGATCA+TGG | + | chr1_3:22361714-22361733 | Msa0109990:intron | 40.0% | |
| !!! | TTTTTTTTTGGTGGTGGTCG+GGG | - | chr1_3:22361988-22362007 | None:intergenic | 40.0% |
| CATATACTTTGTGAGCACCA+AGG | + | chr1_3:22362340-22362359 | Msa0109990:intron | 40.0% | |
| CAAGACATATGCAAAGAGCA+AGG | + | chr1_3:22362567-22362586 | Msa0109990:intron | 40.0% | |
| ATAGTTAAGAGTGGGTAGCA+AGG | + | chr1_3:22363123-22363142 | Msa0109990:intron | 40.0% | |
| ! | ATGCAAGAGTTGTGATGATG+TGG | - | chr1_3:22363189-22363208 | None:intergenic | 40.0% |
| CATAAAATATGCAAGGTCCG+GGG | - | chr1_3:22363687-22363706 | None:intergenic | 40.0% | |
| GCATAAAATATGCAAGGTCC+GGG | - | chr1_3:22363688-22363707 | None:intergenic | 40.0% | |
| TCCATTTCATGGCATTTAGG+TGG | - | chr1_3:22363998-22364017 | None:intergenic | 40.0% | |
| GAACACAACTAGTGTTTGTG+TGG | - | chr1_3:22364044-22364063 | None:intergenic | 40.0% | |
| TGCACTCTACATTATAGCAG+TGG | + | chr1_3:22364069-22364088 | Msa0109990:CDS | 40.0% | |
| GCACTCTACATTATAGCAGT+GGG | + | chr1_3:22364070-22364089 | Msa0109990:CDS | 40.0% | |
| TACATTATAGCAGTGGGAAC+AGG | + | chr1_3:22364076-22364095 | Msa0109990:CDS | 40.0% | |
| GCACCAATTGTGGAAATGTT+GGG | - | chr1_3:22364112-22364131 | None:intergenic | 40.0% | |
| AGCACCAATTGTGGAAATGT+TGG | - | chr1_3:22364113-22364132 | None:intergenic | 40.0% | |
| TAGGGTCAAAATCGTCAAAC+TGG | - | chr1_3:22364138-22364157 | None:intergenic | 40.0% | |
| TAGTGATCCAAAGACAATGC+AGG | - | chr1_3:22364203-22364222 | None:intergenic | 40.0% | |
| GATATTGCAAGTCCAAGAGT+TGG | - | chr1_3:22364289-22364308 | None:intergenic | 40.0% | |
| TCAATCATCACATTCTTGGC+AGG | + | chr1_3:22364307-22364326 | Msa0109990:CDS | 40.0% | |
| AGGGAGTCCATTTATTAGCA+TGG | + | chr1_3:22364360-22364379 | Msa0109990:CDS | 40.0% | |
| CAAGTAAAAGTGAGTACGGT+AGG | - | chr1_3:22364529-22364548 | None:intergenic | 40.0% | |
| TTGCGACCAAGAAACTTATG+AGG | + | chr1_3:22365306-22365325 | Msa0109990:intron | 40.0% | |
| TGCGACCAAGAAACTTATGA+GGG | + | chr1_3:22365307-22365326 | Msa0109990:intron | 40.0% | |
| CCCAAATAGGGATTAAGCTA+AGG | - | chr1_3:22365731-22365750 | None:intergenic | 40.0% | |
| GTACATGCAGTTAAACTTGC+TGG | - | chr1_3:22365855-22365874 | None:intergenic | 40.0% | |
| AAGTTGACCAAGAATCCTAG+AGG | + | chr1_3:22365936-22365955 | Msa0109990:CDS | 40.0% | |
| TCACATGTCACTGAGAAACA+TGG | + | chr1_3:22366260-22366279 | Msa0109990:CDS | 40.0% | |
| !! | AGCTCTGGAAACATAGAACT+TGG | - | chr1_3:22366393-22366412 | None:intergenic | 40.0% |
| AGAGTTAGAAACTTCAGCTC+TGG | - | chr1_3:22366408-22366427 | None:intergenic | 40.0% | |
| ACTACATCTTTGATGAGTGG+CGG | + | chr1_3:22366505-22366524 | Msa0109990:three_prime_UTR | 40.0% | |
| TCTGTTCTCAGATCCAAGAC+AGG | + | chr1_3:22358875-22358894 | Msa0109990:CDS | 45.0% | |
| TGGAAGATATGACAGTGCCT+TGG | - | chr1_3:22359693-22359712 | None:intergenic | 45.0% | |
| ATGCTCATCTTGGACGCTAT+TGG | + | chr1_3:22359776-22359795 | Msa0109990:CDS | 45.0% | |
| AACACCTAAGCCAATGGAGA+AGG | + | chr1_3:22360002-22360021 | Msa0109990:intron | 45.0% | |
| GCACAATCTCTACATCAGCT+AGG | + | chr1_3:22361356-22361375 | Msa0109990:intron | 45.0% | |
| ! | TGAGAGAATGGGGAGTACAA+AGG | + | chr1_3:22363556-22363575 | Msa0109990:intron | 45.0% |
| ! | AGGGTTTTCTTTGTGATGGC+CGG | + | chr1_3:22363653-22363672 | Msa0109990:intron | 45.0% |
| TGAGCTTAGCTCAGTTGGAA+TGG | - | chr1_3:22363716-22363735 | None:intergenic | 45.0% | |
| TTTCGTGAGCTTAGCTCAGT+TGG | - | chr1_3:22363721-22363740 | None:intergenic | 45.0% | |
| !! | CATTTAGGTGGCTTTAGGCT+TGG | - | chr1_3:22363986-22364005 | None:intergenic | 45.0% |
| CATGGCATTTAGGTGGCTTT+AGG | - | chr1_3:22363991-22364010 | None:intergenic | 45.0% | |
| GCCACCTAAATGCCATGAAA+TGG | + | chr1_3:22363994-22364013 | Msa0109990:CDS | 45.0% | |
| ATTATAGCAGTGGGAACAGG+TGG | + | chr1_3:22364079-22364098 | Msa0109990:CDS | 45.0% | |
| TTATAGCAGTGGGAACAGGT+GGG | + | chr1_3:22364080-22364099 | Msa0109990:CDS | 45.0% | |
| AAACTGGTCAGCACCAATTG+TGG | - | chr1_3:22364122-22364141 | None:intergenic | 45.0% | |
| AGCTCTCATTCTTCAACTGG+TGG | + | chr1_3:22364173-22364192 | Msa0109990:CDS | 45.0% | |
| TGGATGTCCTGCATTGTCTT+TGG | + | chr1_3:22364193-22364212 | Msa0109990:CDS | 45.0% | |
| !! | GATAATGTGGGTTGGACTCT+TGG | + | chr1_3:22364253-22364272 | Msa0109990:CDS | 45.0% |
| GGTTATGCTCTTCCAACTCT+TGG | + | chr1_3:22364274-22364293 | Msa0109990:CDS | 45.0% | |
| AGGATCCACACCCAAAATAG+TGG | + | chr1_3:22365147-22365166 | Msa0109990:intron | 45.0% | |
| GGATCCACACCCAAAATAGT+GGG | + | chr1_3:22365148-22365167 | Msa0109990:intron | 45.0% | |
| ! | CATGCAGGTCCCACTATTTT+GGG | - | chr1_3:22365160-22365179 | None:intergenic | 45.0% |
| ! | TCATGCAGGTCCCACTATTT+TGG | - | chr1_3:22365161-22365180 | None:intergenic | 45.0% |
| ACGTCTTCGACCAAGCAAAA+TGG | - | chr1_3:22365410-22365429 | None:intergenic | 45.0% | |
| GTTAGTGTCAATGCCGTTCT+CGG | + | chr1_3:22365498-22365517 | Msa0109990:intron | 45.0% | |
| ACTAACACGAACACCGAGAA+CGG | - | chr1_3:22365514-22365533 | None:intergenic | 45.0% | |
| CATGTGCAGGTTCCTTAACA+AGG | + | chr1_3:22365626-22365645 | Msa0109990:intron | 45.0% | |
| GTTCCTTAACAAGGCATGTG+TGG | + | chr1_3:22365635-22365654 | Msa0109990:CDS | 45.0% | |
| ! | TGTCCACACATGCCTTGTTA+AGG | - | chr1_3:22365641-22365660 | None:intergenic | 45.0% |
| !! | CATGCAGTTAAACTTGCTGG+AGG | - | chr1_3:22365852-22365871 | None:intergenic | 45.0% |
| !! | AGTGGCTGAAGCACTTTTAG+AGG | + | chr1_3:22366115-22366134 | Msa0109990:CDS | 45.0% |
| !! | GTGGCTGAAGCACTTTTAGA+GGG | + | chr1_3:22366116-22366135 | Msa0109990:CDS | 45.0% |
| CCAAGACTCTTCATGCTTTC+TGG | - | chr1_3:22366173-22366192 | None:intergenic | 45.0% | |
| ! | CCAGAAAGCATGAAGAGTCT+TGG | + | chr1_3:22366170-22366189 | Msa0109990:CDS | 45.0% |
| CATGTCACTGAGAAACATGG+TGG | + | chr1_3:22366263-22366282 | Msa0109990:CDS | 45.0% | |
| !! | TAATATCTAATAAAATATAA+TGG | + | chr1_3:22359367-22359386 | Msa0109990:intron | 5.0% |
| !! | TTAAACTTATTAAATATTAT+AGG | - | chr1_3:22360331-22360350 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTTATCT+TGG | + | chr1_3:22360433-22360452 | Msa0109990:intron | 5.0% |
| !!! | TTTTTTTATATCTATATATA+GGG | - | chr1_3:22361423-22361442 | None:intergenic | 5.0% |
| !!! | TTTTTTTTATATCTATATAT+AGG | - | chr1_3:22361424-22361443 | None:intergenic | 5.0% |
| !! | GAAAATAAATATATTTAAAA+AGG | + | chr1_3:22362283-22362302 | Msa0109990:intron | 5.0% |
| !! | AAATAAATATATTTAAAAAG+GGG | + | chr1_3:22362285-22362304 | Msa0109990:intron | 5.0% |
| !! | AAACTAATAAATTATTATAA+AGG | - | chr1_3:22363917-22363936 | None:intergenic | 5.0% |
| !!! | TTATAATAATTTATTAGTTT+TGG | + | chr1_3:22363917-22363936 | Msa0109990:intron | 5.0% |
| !! | CAAAAATTAAATTAAAAATA+GGG | - | chr1_3:22364704-22364723 | None:intergenic | 5.0% |
| !! | ACAAAAATTAAATTAAAAAT+AGG | - | chr1_3:22364705-22364724 | None:intergenic | 5.0% |
| !!! | ATGATTTTTTATATTTTTTA+CGG | - | chr1_3:22364832-22364851 | None:intergenic | 5.0% |
| GTTCTCAGATCCAAGACAGG+TGG | + | chr1_3:22358878-22358897 | Msa0109990:CDS | 50.0% | |
| TCAGATCCAAGACAGGTGGT+TGG | + | chr1_3:22358882-22358901 | Msa0109990:CDS | 50.0% | |
| AGCTTTCCAACCACCTGTCT+TGG | - | chr1_3:22358891-22358910 | None:intergenic | 50.0% | |
| CGGTCATATCGATATGACCG+TGG | + | chr1_3:22359177-22359196 | Msa0109990:intron | 50.0% | |
| TATAGAACCCGTGCGTTGCA+CGG | + | chr1_3:22360091-22360110 | Msa0109990:intron | 50.0% | |
| CCAACTGAGCTAAGCTCACA+AGG | - | chr1_3:22361925-22361944 | None:intergenic | 50.0% | |
| CCTTGTGAGCTTAGCTCAGT+TGG | + | chr1_3:22361922-22361941 | Msa0109990:intron | 50.0% | |
| ! | GGGTTTTCTTTGTGATGGCC+GGG | + | chr1_3:22363654-22363673 | Msa0109990:intron | 50.0% |
| ! | GGTTTTCTTTGTGATGGCCG+GGG | + | chr1_3:22363655-22363674 | Msa0109990:intron | 50.0% |
| !! | AGGTGGCTTTAGGCTTGGTA+GGG | - | chr1_3:22363981-22364000 | None:intergenic | 50.0% |
| !! | TAGGTGGCTTTAGGCTTGGT+AGG | - | chr1_3:22363982-22364001 | None:intergenic | 50.0% |
| TAGCATGGCTAAGGTCATCG+TGG | + | chr1_3:22364375-22364394 | Msa0109990:CDS | 50.0% | |
| AGGTCATCGTGGCAGCTATA+AGG | + | chr1_3:22364386-22364405 | Msa0109990:CDS | 50.0% | |
| !! | AGGTCCCACTATTTTGGGTG+TGG | - | chr1_3:22365155-22365174 | None:intergenic | 50.0% |
| TGACACTAACACGTCGACAC+TGG | - | chr1_3:22365488-22365507 | None:intergenic | 50.0% | |
| AACAAGGCATGTGTGGACAC+TGG | + | chr1_3:22365642-22365661 | Msa0109990:CDS | 50.0% | |
| ACTGAGAAACATGGTGGTCG+AGG | + | chr1_3:22366269-22366288 | Msa0109990:CDS | 50.0% | |
| CTGAGAAACATGGTGGTCGA+GGG | + | chr1_3:22366270-22366289 | Msa0109990:CDS | 50.0% | |
| !! | CACGCCTTCTCCATTGGCTT+AGG | - | chr1_3:22360009-22360028 | None:intergenic | 55.0% |
| ! | AGAAGGCGTGCCCGGATAAA+GGG | + | chr1_3:22360019-22360038 | Msa0109990:intron | 55.0% |
| ATAGAACCCGTGCGTTGCAC+GGG | + | chr1_3:22360092-22360111 | Msa0109990:intron | 55.0% | |
| AATCCAACCCGTGCAACGCA+CGG | - | chr1_3:22360102-22360121 | None:intergenic | 55.0% | |
| AGAAACATGGTGGTCGAGGG+TGG | + | chr1_3:22366273-22366292 | Msa0109990:CDS | 55.0% | |
| ! | TCTTTGATGAGTGGCGGAGC+TGG | + | chr1_3:22366511-22366530 | Msa0109990:three_prime_UTR | 55.0% |
| ! | GAGAAGGCGTGCCCGGATAA+AGG | + | chr1_3:22360018-22360037 | Msa0109990:intron | 60.0% |
| ATCCAACCCGTGCAACGCAC+GGG | - | chr1_3:22360101-22360120 | None:intergenic | 60.0% | |
| AAGGTCCGGGGTTCAAACCC+CGG | - | chr1_3:22363675-22363694 | None:intergenic | 60.0% | |
| ! | TGATGAGTGGCGGAGCTGGA+CGG | + | chr1_3:22366515-22366534 | Msa0109990:three_prime_UTR | 60.0% |
| ! | GCCAATGGAGAAGGCGTGCC+CGG | + | chr1_3:22360011-22360030 | Msa0109990:intron | 65.0% |
| TCCGGGCACGCCTTCTCCAT+TGG | - | chr1_3:22360015-22360034 | None:intergenic | 65.0% | |
| AACCCGTGCGTTGCACGGGT+TGG | + | chr1_3:22360096-22360115 | Msa0109990:intron | 65.0% | |
| GATGGCCGGGGTTTGAACCC+CGG | + | chr1_3:22363667-22363686 | Msa0109990:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 22358812 | 22366545 | 22358812 | ID=Msa0109990;Name=Msa0109990 |
| chr1_3 | mRNA | 22358812 | 22366545 | 22358812 | ID=Msa0109990-mRNA-1;Parent=Msa0109990;Name=Msa0109990-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|1|0.5|1|1|1|4|67|580 |
| chr1_3 | exon | 22358812 | 22358926 | 22358812 | ID=Msa0109990-mRNA-1:exon:7941;Parent=Msa0109990-mRNA-1 |
| chr1_3 | exon | 22359614 | 22359831 | 22359614 | ID=Msa0109990-mRNA-1:exon:7942;Parent=Msa0109990-mRNA-1 |
| chr1_3 | exon | 22363950 | 22364515 | 22363950 | ID=Msa0109990-mRNA-1:exon:7943;Parent=Msa0109990-mRNA-1 |
| chr1_3 | exon | 22365635 | 22366545 | 22365635 | ID=Msa0109990-mRNA-1:exon:7944;Parent=Msa0109990-mRNA-1 |
| chr1_3 | CDS | 22358812 | 22358926 | 22358812 | ID=Msa0109990-mRNA-1:cds;Parent=Msa0109990-mRNA-1 |
| chr1_3 | CDS | 22359614 | 22359831 | 22359614 | ID=Msa0109990-mRNA-1:cds;Parent=Msa0109990-mRNA-1 |
| chr1_3 | CDS | 22363950 | 22364515 | 22363950 | ID=Msa0109990-mRNA-1:cds;Parent=Msa0109990-mRNA-1 |
| chr1_3 | CDS | 22365635 | 22366478 | 22365635 | ID=Msa0109990-mRNA-1:cds;Parent=Msa0109990-mRNA-1 |
| chr1_3 | three_prime_UTR | 22366479 | 22366545 | 22366479 | ID=Msa0109990-mRNA-1:three_prime_utr;Parent=Msa0109990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
