Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855950 | XP_003616173.1 | 98.919 | 370 | 4 | 0 | 1 | 370 | 1 | 370 | 0.0 | 751 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855950 | sp|Q9M9N9|AXY9_ARATH | 58.245 | 376 | 143 | 6 | 1 | 370 | 1 | 368 | 3.81e-141 | 408 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855950 | G7KFU4 | 98.919 | 370 | 4 | 0 | 1 | 370 | 1 | 370 | 0.0 | 751 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002680 | Msa0855950 | 0.812214 | 4.745237e-51 | -8.615850e-47 |
| Msa0002710 | Msa0855950 | 0.820826 | 5.585071e-53 | -8.615850e-47 |
| Msa0031180 | Msa0855950 | 0.801539 | 8.583085e-49 | -8.615850e-47 |
| Msa0054820 | Msa0855950 | 0.812523 | 4.062785e-51 | -8.615850e-47 |
| Msa0096580 | Msa0855950 | 0.812208 | 4.760284e-51 | -8.615850e-47 |
| Msa0100160 | Msa0855950 | 0.810438 | 1.152570e-50 | -8.615850e-47 |
| Msa0721280 | Msa0855950 | 0.806124 | 9.578179e-50 | -8.615850e-47 |
| Msa0763890 | Msa0855950 | 0.804142 | 2.489752e-49 | -8.615850e-47 |
| Msa0763920 | Msa0855950 | 0.800637 | 1.312637e-48 | -8.615850e-47 |
| Msa0342010 | Msa0855950 | 0.807250 | 5.541266e-50 | -8.615850e-47 |
| Msa0855950 | Msa0896240 | 0.800113 | 1.678441e-48 | -8.615850e-47 |
| Msa0855950 | Msa1130530 | 0.800879 | 1.171554e-48 | -8.615850e-47 |
| Msa0855950 | Msa1174850 | 0.803900 | 2.795573e-49 | -8.615850e-47 |
| Msa0855950 | Msa1357890 | 0.803649 | 3.152258e-49 | -8.615850e-47 |
| Msa0855950 | Msa1398090 | 0.800551 | 1.366828e-48 | -8.615850e-47 |
| Msa0855950 | Msa1426570 | 0.801809 | 7.556393e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855950 | MtrunA17_Chr5g0433821 | 98.919 | 370 | 4 | 0 | 1 | 370 | 1 | 370 | 0.0 | 751 |
| Msa0855950 | MtrunA17_Chr5g0433831 | 84.259 | 108 | 15 | 1 | 265 | 370 | 1 | 108 | 1.15e-57 | 183 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855950 | AT3G03210.1 | 58.245 | 376 | 143 | 6 | 1 | 370 | 1 | 368 | 3.87e-142 | 408 |
Find 69 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACAAATGCTTCTGATTA+TGG | 0.165491 | 5_4:+50235747 | Msa0855950:CDS |
| TTGCCTGTTTCGCCGAAATT+TGG | 0.168141 | 5_4:+50235810 | Msa0855950:CDS |
| CTTTGCTTCATGAGATTGTT+TGG | 0.216592 | 5_4:+50235298 | Msa0855950:CDS |
| TTCTTTGTTGAGTTTAGTTT+TGG | 0.229067 | 5_4:+50235518 | Msa0855950:CDS |
| TGATGAGATGGGTTTGAAAT+TGG | 0.236912 | 5_4:+50235608 | Msa0855950:CDS |
| GTGAGTTTCAGAGGCTTAAA+AGG | 0.244825 | 5_4:+50235421 | Msa0855950:CDS |
| TCCTAACAATTTGACAGATT+TGG | 0.259155 | 5_4:+50235650 | Msa0855950:CDS |
| TCTGATTATGGTGGCTTGTT+GGG | 0.286957 | 5_4:+50235759 | Msa0855950:CDS |
| TGGATTTGCTTAATGGGTCT+TGG | 0.290048 | 5_4:+50235454 | Msa0855950:CDS |
| TTAGATCGCCGCATTTGTTT+TGG | 0.290342 | 5_4:+50235868 | Msa0855950:CDS |
| CATTGAATTATGATAAGTTT+TGG | 0.296461 | 5_4:+50235367 | Msa0855950:CDS |
| ACATTTGTATCCGGATGTTT+TGG | 0.314178 | 5_4:+50235692 | Msa0855950:CDS |
| GGTTCATCATTCCCAAATTT+CGG | 0.315941 | 5_4:-50235822 | None:intergenic |
| TCAGAAACAGAAGGAAAATA+AGG | 0.316073 | 5_4:-50235207 | None:intergenic |
| GATGTTATGGATTTGCTTAA+TGG | 0.332464 | 5_4:+50235447 | Msa0855950:CDS |
| TTCTGATTATGGTGGCTTGT+TGG | 0.332739 | 5_4:+50235758 | Msa0855950:CDS |
| TTCCCAAATTTCGGCGAAAC+AGG | 0.345252 | 5_4:-50235813 | None:intergenic |
| GCTTAAAAGGAAGGATGTTA+TGG | 0.347853 | 5_4:+50235434 | Msa0855950:CDS |
| GGATTTGCTTAATGGGTCTT+GGG | 0.351297 | 5_4:+50235455 | Msa0855950:CDS |
| ATGTTATGGATTTGCTTAAT+GGG | 0.354857 | 5_4:+50235448 | Msa0855950:CDS |
| TTTGCTTCATGAGATTGTTT+GGG | 0.355412 | 5_4:+50235299 | Msa0855950:CDS |
| TGCCTGTTTCGCCGAAATTT+GGG | 0.356413 | 5_4:+50235811 | Msa0855950:CDS |
| AATGTTTGGTGCTGTTCAAT+TGG | 0.384156 | 5_4:+50235056 | None:intergenic |
| ACCAAATCTGTCAAATTGTT+AGG | 0.393608 | 5_4:-50235651 | None:intergenic |
| TGTTGTATTGTTTGTTCCAA+TGG | 0.395106 | 5_4:+50235095 | Msa0855950:CDS |
| TGGTGATGGGTTCTGGTTTG+TGG | 0.402650 | 5_4:+50235712 | Msa0855950:CDS |
| GGGTCTTGGGTTATGATTGT+AGG | 0.403798 | 5_4:+50235468 | Msa0855950:CDS |
| CCATTTCAACTACTCGATAT+AGG | 0.405334 | 5_4:+50236020 | Msa0855950:CDS |
| ATGAATTATTTCTCAACAAA+GGG | 0.415974 | 5_4:-50235347 | None:intergenic |
| TAAGAAGAAACATTTGTATC+CGG | 0.417131 | 5_4:+50235683 | Msa0855950:CDS |
| GGATTCGAAGCGGGTTGAAT+CGG | 0.417136 | 5_4:+50235539 | Msa0855950:CDS |
| CCTATATCGAGTAGTTGAAA+TGG | 0.422886 | 5_4:-50236020 | None:intergenic |
| CATATTGATATTGATGAGAT+GGG | 0.430367 | 5_4:+50235597 | Msa0855950:CDS |
| TCTGTCAAATTGTTAGGATA+AGG | 0.433218 | 5_4:-50235645 | None:intergenic |
| AAATGATGATGTTGTGTTTG+TGG | 0.434990 | 5_4:+50235254 | Msa0855950:CDS |
| TCATATTGATATTGATGAGA+TGG | 0.436718 | 5_4:+50235596 | Msa0855950:CDS |
| AACATAGAGTTTATCAAAGT+CGG | 0.442553 | 5_4:-50235900 | None:intergenic |
| GTTGTATTGTTTGTTCCAAT+GGG | 0.452111 | 5_4:+50235096 | Msa0855950:CDS |
| TTGGGAGGTTATGCCAAGTA+AGG | 0.454727 | 5_4:+50235317 | Msa0855950:CDS |
| CTGATTATGGTGGCTTGTTG+GGG | 0.464504 | 5_4:+50235760 | Msa0855950:CDS |
| TGCGATGGGTTCTGTTTCAT+CGG | 0.467835 | 5_4:+50235845 | Msa0855950:CDS |
| TTTGTTCCAATGGGTATGGC+TGG | 0.472651 | 5_4:+50235105 | Msa0855950:CDS |
| AATGAATTATTTCTCAACAA+AGG | 0.477205 | 5_4:-50235348 | None:intergenic |
| ATTGTTTGTTCCAATGGGTA+TGG | 0.477514 | 5_4:+50235101 | Msa0855950:CDS |
| GGTCTTGGGTTATGATTGTA+GGG | 0.490359 | 5_4:+50235469 | Msa0855950:CDS |
| ATGTTTGGTGCTGTTCAATT+GGG | 0.492915 | 5_4:+50235057 | Msa0855950:CDS |
| TTCCAATGGGTATGGCTGGT+TGG | 0.506316 | 5_4:+50235109 | Msa0855950:CDS |
| GCTTCATGAGATTGTTTGGG+AGG | 0.519554 | 5_4:+50235302 | Msa0855950:CDS |
| TTAGTGAATGTGAGTTTCAG+AGG | 0.523592 | 5_4:+50235412 | Msa0855950:CDS |
| TGAAGAATAAAACTTTGTTA+CGG | 0.526592 | 5_4:-50235140 | None:intergenic |
| CGAAGCGGGTTGAATCGGTT+AGG | 0.535549 | 5_4:+50235544 | Msa0855950:CDS |
| GAACCCATCACCAAAACATC+CGG | 0.544298 | 5_4:-50235702 | None:intergenic |
| GTTTCAGAGGCTTAAAAGGA+AGG | 0.563535 | 5_4:+50235425 | Msa0855950:CDS |
| GGATCATTGAGTTTGAATTG+TGG | 0.569079 | 5_4:+50236041 | Msa0855950:CDS |
| TGCCAACCAGCCATACCCAT+TGG | 0.570463 | 5_4:-50235111 | None:intergenic |
| ACAAATGCTTCTGATTATGG+TGG | 0.580954 | 5_4:+50235750 | Msa0855950:CDS |
| TGGGAATGATGAACCTGCGA+TGG | 0.581367 | 5_4:+50235830 | Msa0855950:CDS |
| GCAAGGTGAGTATGAGAGAG+AGG | 0.584001 | 5_4:+50235962 | Msa0855950:CDS |
| TTGTAGGGGATTCACAAGCT+AGG | 0.585033 | 5_4:+50235484 | Msa0855950:CDS |
| GGAATCAAATGTACAGATGA+TGG | 0.585892 | 5_4:+50236062 | Msa0855950:CDS |
| GATGATGGTATGCATTATGA+TGG | 0.601643 | 5_4:+50236077 | Msa0855950:CDS |
| GTCTTGGGTTATGATTGTAG+GGG | 0.606642 | 5_4:+50235470 | Msa0855950:CDS |
| GGGAATGATGAACCTGCGAT+GGG | 0.607899 | 5_4:+50235831 | Msa0855950:CDS |
| CTCATAAAATCAGAAACAGA+AGG | 0.611262 | 5_4:-50235216 | None:intergenic |
| AAACTCTATGTTGAATACAC+AGG | 0.627271 | 5_4:+50235911 | Msa0855950:CDS |
| GTTGTGTTTGTGGAAGATCG+TGG | 0.630808 | 5_4:+50235264 | Msa0855950:CDS |
| GATGAAACAGAACCCATCGC+AGG | 0.633804 | 5_4:-50235843 | None:intergenic |
| AAGATGAATGATGTAATGCA+AGG | 0.697701 | 5_4:+50235945 | Msa0855950:CDS |
| ATACCTAGCCAAAACAAATG+CGG | 0.712684 | 5_4:-50235876 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGAAATTGGATTTTATTT+GGG | + | chr5_4:50235620-50235639 | Msa0855950:CDS | 15.0% |
| !!! | TTTGAAATTGGATTTTATTT+GGG | + | chr5_4:50235620-50235639 | Msa0855950:CDS | 15.0% |
| !! | TGAAGAATAAAACTTTGTTA+CGG | - | chr5_4:50235143-50235162 | None:intergenic | 20.0% |
| !!! | ATGAATTATTTCTCAACAAA+GGG | - | chr5_4:50235350-50235369 | None:intergenic | 20.0% |
| !!! | AATGAATTATTTCTCAACAA+AGG | - | chr5_4:50235351-50235370 | None:intergenic | 20.0% |
| !!! | CATTGAATTATGATAAGTTT+TGG | + | chr5_4:50235367-50235386 | Msa0855950:CDS | 20.0% |
| !!! | GTTTGAAATTGGATTTTATT+TGG | + | chr5_4:50235619-50235638 | Msa0855950:CDS | 20.0% |
| !! | TGAAGAATAAAACTTTGTTA+CGG | - | chr5_4:50235143-50235162 | None:intergenic | 20.0% |
| !!! | ATGAATTATTTCTCAACAAA+GGG | - | chr5_4:50235350-50235369 | None:intergenic | 20.0% |
| !!! | AATGAATTATTTCTCAACAA+AGG | - | chr5_4:50235351-50235370 | None:intergenic | 20.0% |
| !!! | CATTGAATTATGATAAGTTT+TGG | + | chr5_4:50235367-50235386 | Msa0855950:CDS | 20.0% |
| !!! | GTTTGAAATTGGATTTTATT+TGG | + | chr5_4:50235619-50235638 | Msa0855950:CDS | 20.0% |
| !!! | AACAAAGTTTTATTCTTCAG+TGG | + | chr5_4:50235144-50235163 | Msa0855950:CDS | 25.0% |
| !!! | ATTATGATAAGTTTTGGTCT+TGG | + | chr5_4:50235373-50235392 | Msa0855950:CDS | 25.0% |
| !! | ATGTTATGGATTTGCTTAAT+GGG | + | chr5_4:50235448-50235467 | Msa0855950:CDS | 25.0% |
| !!! | TTCTTTGTTGAGTTTAGTTT+TGG | + | chr5_4:50235518-50235537 | Msa0855950:CDS | 25.0% |
| !!! | TTAGGAGTTTTTTGTTTAAG+AGG | + | chr5_4:50235562-50235581 | Msa0855950:CDS | 25.0% |
| ! | TCATATTGATATTGATGAGA+TGG | + | chr5_4:50235596-50235615 | Msa0855950:CDS | 25.0% |
| ! | CATATTGATATTGATGAGAT+GGG | + | chr5_4:50235597-50235616 | Msa0855950:CDS | 25.0% |
| ! | TAAGAAGAAACATTTGTATC+CGG | + | chr5_4:50235683-50235702 | Msa0855950:CDS | 25.0% |
| ! | ATTACAAATGCTTCTGATTA+TGG | + | chr5_4:50235747-50235766 | Msa0855950:CDS | 25.0% |
| ! | AACATAGAGTTTATCAAAGT+CGG | - | chr5_4:50235903-50235922 | None:intergenic | 25.0% |
| !!! | AACAAAGTTTTATTCTTCAG+TGG | + | chr5_4:50235144-50235163 | Msa0855950:CDS | 25.0% |
| !!! | ATTATGATAAGTTTTGGTCT+TGG | + | chr5_4:50235373-50235392 | Msa0855950:CDS | 25.0% |
| !! | ATGTTATGGATTTGCTTAAT+GGG | + | chr5_4:50235448-50235467 | Msa0855950:CDS | 25.0% |
| !!! | TTCTTTGTTGAGTTTAGTTT+TGG | + | chr5_4:50235518-50235537 | Msa0855950:CDS | 25.0% |
| !!! | TTAGGAGTTTTTTGTTTAAG+AGG | + | chr5_4:50235562-50235581 | Msa0855950:CDS | 25.0% |
| ! | TCATATTGATATTGATGAGA+TGG | + | chr5_4:50235596-50235615 | Msa0855950:CDS | 25.0% |
| ! | CATATTGATATTGATGAGAT+GGG | + | chr5_4:50235597-50235616 | Msa0855950:CDS | 25.0% |
| ! | TAAGAAGAAACATTTGTATC+CGG | + | chr5_4:50235683-50235702 | Msa0855950:CDS | 25.0% |
| ! | ATTACAAATGCTTCTGATTA+TGG | + | chr5_4:50235747-50235766 | Msa0855950:CDS | 25.0% |
| ! | AACATAGAGTTTATCAAAGT+CGG | - | chr5_4:50235903-50235922 | None:intergenic | 25.0% |
| TGTTGTATTGTTTGTTCCAA+TGG | + | chr5_4:50235095-50235114 | Msa0855950:CDS | 30.0% | |
| GTTGTATTGTTTGTTCCAAT+GGG | + | chr5_4:50235096-50235115 | Msa0855950:CDS | 30.0% | |
| TCAGAAACAGAAGGAAAATA+AGG | - | chr5_4:50235210-50235229 | None:intergenic | 30.0% | |
| CTCATAAAATCAGAAACAGA+AGG | - | chr5_4:50235219-50235238 | None:intergenic | 30.0% | |
| ! | AAATGATGATGTTGTGTTTG+TGG | + | chr5_4:50235254-50235273 | Msa0855950:CDS | 30.0% |
| TTTGCTTCATGAGATTGTTT+GGG | + | chr5_4:50235299-50235318 | Msa0855950:CDS | 30.0% | |
| ! | GATGTTATGGATTTGCTTAA+TGG | + | chr5_4:50235447-50235466 | Msa0855950:CDS | 30.0% |
| TCTGTCAAATTGTTAGGATA+AGG | - | chr5_4:50235648-50235667 | None:intergenic | 30.0% | |
| TCCTAACAATTTGACAGATT+TGG | + | chr5_4:50235650-50235669 | Msa0855950:CDS | 30.0% | |
| ACCAAATCTGTCAAATTGTT+AGG | - | chr5_4:50235654-50235673 | None:intergenic | 30.0% | |
| AAACTCTATGTTGAATACAC+AGG | + | chr5_4:50235911-50235930 | Msa0855950:CDS | 30.0% | |
| AAGATGAATGATGTAATGCA+AGG | + | chr5_4:50235945-50235964 | Msa0855950:CDS | 30.0% | |
| ! | TTCGAAAAAGTGGTATTTTG+AGG | + | chr5_4:50235985-50236004 | Msa0855950:CDS | 30.0% |
| !! | TCGAAAAAGTGGTATTTTGA+GGG | + | chr5_4:50235986-50236005 | Msa0855950:CDS | 30.0% |
| TGTTGTATTGTTTGTTCCAA+TGG | + | chr5_4:50235095-50235114 | Msa0855950:CDS | 30.0% | |
| GTTGTATTGTTTGTTCCAAT+GGG | + | chr5_4:50235096-50235115 | Msa0855950:CDS | 30.0% | |
| TCAGAAACAGAAGGAAAATA+AGG | - | chr5_4:50235210-50235229 | None:intergenic | 30.0% | |
| CTCATAAAATCAGAAACAGA+AGG | - | chr5_4:50235219-50235238 | None:intergenic | 30.0% | |
| ! | AAATGATGATGTTGTGTTTG+TGG | + | chr5_4:50235254-50235273 | Msa0855950:CDS | 30.0% |
| TTTGCTTCATGAGATTGTTT+GGG | + | chr5_4:50235299-50235318 | Msa0855950:CDS | 30.0% | |
| ! | GATGTTATGGATTTGCTTAA+TGG | + | chr5_4:50235447-50235466 | Msa0855950:CDS | 30.0% |
| TCTGTCAAATTGTTAGGATA+AGG | - | chr5_4:50235648-50235667 | None:intergenic | 30.0% | |
| TCCTAACAATTTGACAGATT+TGG | + | chr5_4:50235650-50235669 | Msa0855950:CDS | 30.0% | |
| ACCAAATCTGTCAAATTGTT+AGG | - | chr5_4:50235654-50235673 | None:intergenic | 30.0% | |
| AAACTCTATGTTGAATACAC+AGG | + | chr5_4:50235911-50235930 | Msa0855950:CDS | 30.0% | |
| AAGATGAATGATGTAATGCA+AGG | + | chr5_4:50235945-50235964 | Msa0855950:CDS | 30.0% | |
| ! | TTCGAAAAAGTGGTATTTTG+AGG | + | chr5_4:50235985-50236004 | Msa0855950:CDS | 30.0% |
| !! | TCGAAAAAGTGGTATTTTGA+GGG | + | chr5_4:50235986-50236005 | Msa0855950:CDS | 30.0% |
| !! | ATGTTTGGTGCTGTTCAATT+GGG | + | chr5_4:50235057-50235076 | Msa0855950:CDS | 35.0% |
| ATTGTTTGTTCCAATGGGTA+TGG | + | chr5_4:50235101-50235120 | Msa0855950:CDS | 35.0% | |
| ! | CTTTTCATTACTCTTGCAGT+TGG | + | chr5_4:50235171-50235190 | Msa0855950:CDS | 35.0% |
| CTTTGCTTCATGAGATTGTT+TGG | + | chr5_4:50235298-50235317 | Msa0855950:CDS | 35.0% | |
| AAAGGGTCAAAAACCTTACT+TGG | - | chr5_4:50235333-50235352 | None:intergenic | 35.0% | |
| TTAGTGAATGTGAGTTTCAG+AGG | + | chr5_4:50235412-50235431 | Msa0855950:CDS | 35.0% | |
| GCTTAAAAGGAAGGATGTTA+TGG | + | chr5_4:50235434-50235453 | Msa0855950:CDS | 35.0% | |
| !!! | GTTTAGTTTTGGATTCGAAG+CGG | + | chr5_4:50235529-50235548 | Msa0855950:CDS | 35.0% |
| !!! | TTTAGTTTTGGATTCGAAGC+GGG | + | chr5_4:50235530-50235549 | Msa0855950:CDS | 35.0% |
| ! | TGATGAGATGGGTTTGAAAT+TGG | + | chr5_4:50235608-50235627 | Msa0855950:CDS | 35.0% |
| ! | ACATTTGTATCCGGATGTTT+TGG | + | chr5_4:50235692-50235711 | Msa0855950:CDS | 35.0% |
| ACAAATGCTTCTGATTATGG+TGG | + | chr5_4:50235750-50235769 | Msa0855950:CDS | 35.0% | |
| GGTTCATCATTCCCAAATTT+CGG | - | chr5_4:50235825-50235844 | None:intergenic | 35.0% | |
| ATACCTAGCCAAAACAAATG+CGG | - | chr5_4:50235879-50235898 | None:intergenic | 35.0% | |
| CCTATATCGAGTAGTTGAAA+TGG | - | chr5_4:50236023-50236042 | None:intergenic | 35.0% | |
| CCATTTCAACTACTCGATAT+AGG | + | chr5_4:50236020-50236039 | Msa0855950:CDS | 35.0% | |
| GGATCATTGAGTTTGAATTG+TGG | + | chr5_4:50236041-50236060 | Msa0855950:CDS | 35.0% | |
| GGAATCAAATGTACAGATGA+TGG | + | chr5_4:50236062-50236081 | Msa0855950:CDS | 35.0% | |
| ! | GATGATGGTATGCATTATGA+TGG | + | chr5_4:50236077-50236096 | Msa0855950:CDS | 35.0% |
| !! | ATGTTTGGTGCTGTTCAATT+GGG | + | chr5_4:50235057-50235076 | Msa0855950:CDS | 35.0% |
| ATTGTTTGTTCCAATGGGTA+TGG | + | chr5_4:50235101-50235120 | Msa0855950:CDS | 35.0% | |
| ! | CTTTTCATTACTCTTGCAGT+TGG | + | chr5_4:50235171-50235190 | Msa0855950:CDS | 35.0% |
| CTTTGCTTCATGAGATTGTT+TGG | + | chr5_4:50235298-50235317 | Msa0855950:CDS | 35.0% | |
| AAAGGGTCAAAAACCTTACT+TGG | - | chr5_4:50235333-50235352 | None:intergenic | 35.0% | |
| TTAGTGAATGTGAGTTTCAG+AGG | + | chr5_4:50235412-50235431 | Msa0855950:CDS | 35.0% | |
| GCTTAAAAGGAAGGATGTTA+TGG | + | chr5_4:50235434-50235453 | Msa0855950:CDS | 35.0% | |
| !!! | GTTTAGTTTTGGATTCGAAG+CGG | + | chr5_4:50235529-50235548 | Msa0855950:CDS | 35.0% |
| !!! | TTTAGTTTTGGATTCGAAGC+GGG | + | chr5_4:50235530-50235549 | Msa0855950:CDS | 35.0% |
| ! | TGATGAGATGGGTTTGAAAT+TGG | + | chr5_4:50235608-50235627 | Msa0855950:CDS | 35.0% |
| ! | ACATTTGTATCCGGATGTTT+TGG | + | chr5_4:50235692-50235711 | Msa0855950:CDS | 35.0% |
| ACAAATGCTTCTGATTATGG+TGG | + | chr5_4:50235750-50235769 | Msa0855950:CDS | 35.0% | |
| GGTTCATCATTCCCAAATTT+CGG | - | chr5_4:50235825-50235844 | None:intergenic | 35.0% | |
| ATACCTAGCCAAAACAAATG+CGG | - | chr5_4:50235879-50235898 | None:intergenic | 35.0% | |
| CCTATATCGAGTAGTTGAAA+TGG | - | chr5_4:50236023-50236042 | None:intergenic | 35.0% | |
| CCATTTCAACTACTCGATAT+AGG | + | chr5_4:50236020-50236039 | Msa0855950:CDS | 35.0% | |
| GGATCATTGAGTTTGAATTG+TGG | + | chr5_4:50236041-50236060 | Msa0855950:CDS | 35.0% | |
| GGAATCAAATGTACAGATGA+TGG | + | chr5_4:50236062-50236081 | Msa0855950:CDS | 35.0% | |
| ! | GATGATGGTATGCATTATGA+TGG | + | chr5_4:50236077-50236096 | Msa0855950:CDS | 35.0% |
| GTGAGTTTCAGAGGCTTAAA+AGG | + | chr5_4:50235421-50235440 | Msa0855950:CDS | 40.0% | |
| GTTTCAGAGGCTTAAAAGGA+AGG | + | chr5_4:50235425-50235444 | Msa0855950:CDS | 40.0% | |
| ! | TGGATTTGCTTAATGGGTCT+TGG | + | chr5_4:50235454-50235473 | Msa0855950:CDS | 40.0% |
| ! | GGATTTGCTTAATGGGTCTT+GGG | + | chr5_4:50235455-50235474 | Msa0855950:CDS | 40.0% |
| GGTCTTGGGTTATGATTGTA+GGG | + | chr5_4:50235469-50235488 | Msa0855950:CDS | 40.0% | |
| GTCTTGGGTTATGATTGTAG+GGG | + | chr5_4:50235470-50235489 | Msa0855950:CDS | 40.0% | |
| !!! | TATCCGGATGTTTTGGTGAT+GGG | + | chr5_4:50235699-50235718 | Msa0855950:CDS | 40.0% |
| ! | TTCTGATTATGGTGGCTTGT+TGG | + | chr5_4:50235758-50235777 | Msa0855950:CDS | 40.0% |
| !! | TCTGATTATGGTGGCTTGTT+GGG | + | chr5_4:50235759-50235778 | Msa0855950:CDS | 40.0% |
| ! | TTAGATCGCCGCATTTGTTT+TGG | + | chr5_4:50235868-50235887 | Msa0855950:CDS | 40.0% |
| !! | AGTGGTATTTTGAGGGAGTT+TGG | + | chr5_4:50235993-50236012 | Msa0855950:CDS | 40.0% |
| GTGAGTTTCAGAGGCTTAAA+AGG | + | chr5_4:50235421-50235440 | Msa0855950:CDS | 40.0% | |
| GTTTCAGAGGCTTAAAAGGA+AGG | + | chr5_4:50235425-50235444 | Msa0855950:CDS | 40.0% | |
| ! | TGGATTTGCTTAATGGGTCT+TGG | + | chr5_4:50235454-50235473 | Msa0855950:CDS | 40.0% |
| ! | GGATTTGCTTAATGGGTCTT+GGG | + | chr5_4:50235455-50235474 | Msa0855950:CDS | 40.0% |
| GGTCTTGGGTTATGATTGTA+GGG | + | chr5_4:50235469-50235488 | Msa0855950:CDS | 40.0% | |
| GTCTTGGGTTATGATTGTAG+GGG | + | chr5_4:50235470-50235489 | Msa0855950:CDS | 40.0% | |
| !!! | TATCCGGATGTTTTGGTGAT+GGG | + | chr5_4:50235699-50235718 | Msa0855950:CDS | 40.0% |
| ! | TTCTGATTATGGTGGCTTGT+TGG | + | chr5_4:50235758-50235777 | Msa0855950:CDS | 40.0% |
| !! | TCTGATTATGGTGGCTTGTT+GGG | + | chr5_4:50235759-50235778 | Msa0855950:CDS | 40.0% |
| ! | TTAGATCGCCGCATTTGTTT+TGG | + | chr5_4:50235868-50235887 | Msa0855950:CDS | 40.0% |
| !! | AGTGGTATTTTGAGGGAGTT+TGG | + | chr5_4:50235993-50236012 | Msa0855950:CDS | 40.0% |
| TTTGTTCCAATGGGTATGGC+TGG | + | chr5_4:50235105-50235124 | Msa0855950:CDS | 45.0% | |
| GTTGTGTTTGTGGAAGATCG+TGG | + | chr5_4:50235264-50235283 | Msa0855950:CDS | 45.0% | |
| GCTTCATGAGATTGTTTGGG+AGG | + | chr5_4:50235302-50235321 | Msa0855950:CDS | 45.0% | |
| TTGGGAGGTTATGCCAAGTA+AGG | + | chr5_4:50235317-50235336 | Msa0855950:CDS | 45.0% | |
| GGGTCTTGGGTTATGATTGT+AGG | + | chr5_4:50235468-50235487 | Msa0855950:CDS | 45.0% | |
| TTGTAGGGGATTCACAAGCT+AGG | + | chr5_4:50235484-50235503 | Msa0855950:CDS | 45.0% | |
| !!! | GTATCCGGATGTTTTGGTGA+TGG | + | chr5_4:50235698-50235717 | Msa0855950:CDS | 45.0% |
| GAACCCATCACCAAAACATC+CGG | - | chr5_4:50235705-50235724 | None:intergenic | 45.0% | |
| !!! | GATGTTTTGGTGATGGGTTC+TGG | + | chr5_4:50235705-50235724 | Msa0855950:CDS | 45.0% |
| !! | CTGATTATGGTGGCTTGTTG+GGG | + | chr5_4:50235760-50235779 | Msa0855950:CDS | 45.0% |
| TTGCCTGTTTCGCCGAAATT+TGG | + | chr5_4:50235810-50235829 | Msa0855950:CDS | 45.0% | |
| TGCCTGTTTCGCCGAAATTT+GGG | + | chr5_4:50235811-50235830 | Msa0855950:CDS | 45.0% | |
| TTCCCAAATTTCGGCGAAAC+AGG | - | chr5_4:50235816-50235835 | None:intergenic | 45.0% | |
| ! | TGCGATGGGTTCTGTTTCAT+CGG | + | chr5_4:50235845-50235864 | Msa0855950:CDS | 45.0% |
| GAGAGAGAGGTTCGAAAAAG+TGG | + | chr5_4:50235975-50235994 | Msa0855950:CDS | 45.0% | |
| !! | GGTATTTTGAGGGAGTTTGG+TGG | + | chr5_4:50235996-50236015 | Msa0855950:CDS | 45.0% |
| TTTGTTCCAATGGGTATGGC+TGG | + | chr5_4:50235105-50235124 | Msa0855950:CDS | 45.0% | |
| GTTGTGTTTGTGGAAGATCG+TGG | + | chr5_4:50235264-50235283 | Msa0855950:CDS | 45.0% | |
| GCTTCATGAGATTGTTTGGG+AGG | + | chr5_4:50235302-50235321 | Msa0855950:CDS | 45.0% | |
| TTGGGAGGTTATGCCAAGTA+AGG | + | chr5_4:50235317-50235336 | Msa0855950:CDS | 45.0% | |
| GGGTCTTGGGTTATGATTGT+AGG | + | chr5_4:50235468-50235487 | Msa0855950:CDS | 45.0% | |
| TTGTAGGGGATTCACAAGCT+AGG | + | chr5_4:50235484-50235503 | Msa0855950:CDS | 45.0% | |
| !!! | GTATCCGGATGTTTTGGTGA+TGG | + | chr5_4:50235698-50235717 | Msa0855950:CDS | 45.0% |
| GAACCCATCACCAAAACATC+CGG | - | chr5_4:50235705-50235724 | None:intergenic | 45.0% | |
| !!! | GATGTTTTGGTGATGGGTTC+TGG | + | chr5_4:50235705-50235724 | Msa0855950:CDS | 45.0% |
| !! | CTGATTATGGTGGCTTGTTG+GGG | + | chr5_4:50235760-50235779 | Msa0855950:CDS | 45.0% |
| TTGCCTGTTTCGCCGAAATT+TGG | + | chr5_4:50235810-50235829 | Msa0855950:CDS | 45.0% | |
| TGCCTGTTTCGCCGAAATTT+GGG | + | chr5_4:50235811-50235830 | Msa0855950:CDS | 45.0% | |
| TTCCCAAATTTCGGCGAAAC+AGG | - | chr5_4:50235816-50235835 | None:intergenic | 45.0% | |
| ! | TGCGATGGGTTCTGTTTCAT+CGG | + | chr5_4:50235845-50235864 | Msa0855950:CDS | 45.0% |
| GAGAGAGAGGTTCGAAAAAG+TGG | + | chr5_4:50235975-50235994 | Msa0855950:CDS | 45.0% | |
| !! | GGTATTTTGAGGGAGTTTGG+TGG | + | chr5_4:50235996-50236015 | Msa0855950:CDS | 45.0% |
| TTCCAATGGGTATGGCTGGT+TGG | + | chr5_4:50235109-50235128 | Msa0855950:CDS | 50.0% | |
| !! | GGATTCGAAGCGGGTTGAAT+CGG | + | chr5_4:50235539-50235558 | Msa0855950:CDS | 50.0% |
| !! | TGGTGATGGGTTCTGGTTTG+TGG | + | chr5_4:50235712-50235731 | Msa0855950:CDS | 50.0% |
| TGGGAATGATGAACCTGCGA+TGG | + | chr5_4:50235830-50235849 | Msa0855950:CDS | 50.0% | |
| GGGAATGATGAACCTGCGAT+GGG | + | chr5_4:50235831-50235850 | Msa0855950:CDS | 50.0% | |
| GATGAAACAGAACCCATCGC+AGG | - | chr5_4:50235846-50235865 | None:intergenic | 50.0% | |
| !!! | TCGCCGCATTTGTTTTGGCT+AGG | + | chr5_4:50235873-50235892 | Msa0855950:CDS | 50.0% |
| GCAAGGTGAGTATGAGAGAG+AGG | + | chr5_4:50235962-50235981 | Msa0855950:CDS | 50.0% | |
| TTCCAATGGGTATGGCTGGT+TGG | + | chr5_4:50235109-50235128 | Msa0855950:CDS | 50.0% | |
| !! | GGATTCGAAGCGGGTTGAAT+CGG | + | chr5_4:50235539-50235558 | Msa0855950:CDS | 50.0% |
| !! | TGGTGATGGGTTCTGGTTTG+TGG | + | chr5_4:50235712-50235731 | Msa0855950:CDS | 50.0% |
| TGGGAATGATGAACCTGCGA+TGG | + | chr5_4:50235830-50235849 | Msa0855950:CDS | 50.0% | |
| GGGAATGATGAACCTGCGAT+GGG | + | chr5_4:50235831-50235850 | Msa0855950:CDS | 50.0% | |
| GATGAAACAGAACCCATCGC+AGG | - | chr5_4:50235846-50235865 | None:intergenic | 50.0% | |
| !!! | TCGCCGCATTTGTTTTGGCT+AGG | + | chr5_4:50235873-50235892 | Msa0855950:CDS | 50.0% |
| GCAAGGTGAGTATGAGAGAG+AGG | + | chr5_4:50235962-50235981 | Msa0855950:CDS | 50.0% | |
| TGCCAACCAGCCATACCCAT+TGG | - | chr5_4:50235114-50235133 | None:intergenic | 55.0% | |
| !! | CGAAGCGGGTTGAATCGGTT+AGG | + | chr5_4:50235544-50235563 | Msa0855950:CDS | 55.0% |
| TGCCAACCAGCCATACCCAT+TGG | - | chr5_4:50235114-50235133 | None:intergenic | 55.0% | |
| !! | CGAAGCGGGTTGAATCGGTT+AGG | + | chr5_4:50235544-50235563 | Msa0855950:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 50235057 | 50236169 | 50235057 | ID=Msa0855950;Name=Msa0855950 |
| chr5_4 | mRNA | 50235057 | 50236169 | 50235057 | ID=Msa0855950-mRNA-1;Parent=Msa0855950;Name=Msa0855950-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|370 |
| chr5_4 | exon | 50235057 | 50236169 | 50235057 | ID=Msa0855950-mRNA-1:exon:15703;Parent=Msa0855950-mRNA-1 |
| chr5_4 | CDS | 50235057 | 50236169 | 50235057 | ID=Msa0855950-mRNA-1:cds;Parent=Msa0855950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
