AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1398090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1398090 MtrunA17_Chr5g0397781 79.918 244 14 2 1 244 1 209 1.69e-118 337
Msa1398090 MtrunA17_Chr8g0386521 52.273 176 75 1 78 244 25 200 9.65e-55 174
Msa1398090 MtrunA17_Chr1g0203401 57.937 126 53 0 117 242 84 209 6.08e-45 149
Msa1398090 MtrunA17_Chr8g0349271 59.524 126 51 0 117 242 75 200 1.32e-43 146
Msa1398090 MtrunA17_Chr7g0247121 50.769 65 32 0 178 242 34 98 8.97e-16 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1398090 AT5G23750.3 60.317 126 50 0 117 242 104 229 2.64e-48 159
Msa1398090 AT5G23750.2 60.317 126 50 0 117 242 76 201 3.95e-48 158
Msa1398090 AT5G23750.1 60.317 126 50 0 117 242 77 202 4.89e-48 157
Msa1398090 AT3G48940.1 57.937 126 53 0 117 242 50 175 2.46e-44 147
Msa1398090 AT3G61260.1 56.154 130 57 0 113 242 83 212 3.51e-43 145
Msa1398090 AT2G45820.1 58.519 135 56 0 108 242 56 190 2.12e-39 135
Msa1398090 AT1G63295.1 43.243 111 63 0 118 228 24 134 1.16e-20 85.5
Msa1398090 AT1G63295.2 43.243 111 63 0 118 228 64 174 1.94e-20 86.3
Msa1398090 AT4G00670.1 37.963 108 66 1 136 242 16 123 2.53e-17 75.9

Find 48 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAATCTTCTGTTGGATTA+TGG 0.203365 tig0022240:+66422 Msa1398090:CDS
TTCTCCTTGGCTTAGGCCCT+GGG 0.256568 tig0022240:+65596 Msa1398090:intron
AAGCATGCAAACAATTTCTT+TGG 0.279239 tig0022240:-66982 None:intergenic
CATGCTGATAATAAGGAAAC+TGG 0.290185 tig0022240:+66079 Msa1398090:CDS
ATTCCACTTGTGTACCATTA+AGG 0.296132 tig0022240:+63924 Msa1398090:CDS
ATATACCATTGGTACCTTAA+TGG 0.309839 tig0022240:-63938 None:intergenic
TGGGGACCATGATGATAAAA+AGG 0.310600 tig0022240:+66099 Msa1398090:CDS
GCAATCTTCTGTTGGATTAT+GGG 0.326593 tig0022240:+66423 Msa1398090:CDS
AAAAGACAAAGGCAGAAAAT+AGG 0.344478 tig0022240:+66295 Msa1398090:CDS
AGATGATCATGCTGATAATA+AGG 0.352782 tig0022240:+66072 Msa1398090:CDS
GTAGTGGCTTCACTTCTATC+TGG 0.357015 tig0022240:+65677 Msa1398090:CDS
TAGGCCCTGGGAAATTTGCC+AGG 0.386597 tig0022240:+65608 Msa1398090:intron
GGGGAAAGCTCTTCAGGAAC+AGG 0.393746 tig0022240:-64151 None:intergenic
GCTTTCCCCTGTTGTGGAAA+AGG 0.394410 tig0022240:+64165 Msa1398090:CDS
ACAACAGGGGAAAGCTCTTC+AGG 0.423226 tig0022240:-64157 None:intergenic
ACCACAGCTACAGTCTCTTC+TGG 0.424564 tig0022240:+64126 Msa1398090:CDS
TTGCCTGCTGAGTAGGCTCC+TGG 0.434366 tig0022240:-64219 None:intergenic
TGAAGAGCTTTCCCCTGTTG+TGG 0.460075 tig0022240:+64159 Msa1398090:CDS
CATGCCCCTGTCAAAATCCT+TGG 0.463620 tig0022240:+65636 Msa1398090:CDS
AAACCCCTGGCAAATTTCCC+AGG 0.473618 tig0022240:-65613 None:intergenic
TACAAGAAGCAATCTTCTGT+TGG 0.476983 tig0022240:+66415 Msa1398090:CDS
AAGCAAGAAATCATCTATAG+AGG 0.477360 tig0022240:+66450 Msa1398090:CDS
AATTGTAGCAGAGAAAAGAT+TGG 0.480532 tig0022240:+66245 Msa1398090:CDS
AATCAGCATATTTCTTGTAG+TGG 0.501732 tig0022240:+65661 Msa1398090:CDS
CAGCCAGGAGCCTACTCAGC+AGG 0.511310 tig0022240:+64216 Msa1398090:CDS
ATTGGCTTTAATTAAAGCAT+GGG 0.513985 tig0022240:+66263 Msa1398090:CDS
ACTGATATTGCCTGCTGAGT+AGG 0.515835 tig0022240:-64226 None:intergenic
GATTGGCTTTAATTAAAGCA+TGG 0.523135 tig0022240:+66262 Msa1398090:CDS
TGACAGGGGCATGAAACCCC+TGG 0.531695 tig0022240:-65626 None:intergenic
AGGCCCTGGGAAATTTGCCA+GGG 0.546307 tig0022240:+65609 Msa1398090:intron
AGAAATATGCTGATTTGCCA+AGG 0.552067 tig0022240:-65653 None:intergenic
GGCACAACTCAAGAAATTTG+AGG 0.555597 tig0022240:+66471 Msa1398090:CDS
ATGCTGATAATAAGGAAACT+GGG 0.564807 tig0022240:+66080 Msa1398090:CDS
GGAAGAATGTCTGGAGCTAG+AGG 0.585162 tig0022240:+66924 Msa1398090:CDS
ATTTCTTTGGTGCAACTCCA+CGG 0.591194 tig0022240:-66969 None:intergenic
AAGCAATATCAGTATCAGCC+AGG 0.592102 tig0022240:+64201 Msa1398090:CDS
GGCCCTGGGAAATTTGCCAG+GGG 0.594709 tig0022240:+65610 Msa1398090:intron
GCTGCAAAGTTTCGTAGCCG+TGG 0.595886 tig0022240:+66952 Msa1398090:CDS
ATCTTCTGTTGGATTATGGG+AGG 0.596122 tig0022240:+66426 Msa1398090:CDS
AGAATCAGAAGGTTCTAGCA+TGG 0.610166 tig0022240:+63901 Msa1398090:CDS
CAAGTCATGGGAGAATCAGA+AGG 0.612103 tig0022240:+63890 None:intergenic
GTACCTTAATGGTACACAAG+TGG 0.619344 tig0022240:-63927 None:intergenic
TCCAGAAGAGACTGTAGCTG+TGG 0.625821 tig0022240:-64127 None:intergenic
TGCTGATAATAAGGAAACTG+GGG 0.627976 tig0022240:+66081 Msa1398090:CDS
AACCCCTGGCAAATTTCCCA+GGG 0.643382 tig0022240:-65612 None:intergenic
GGAAGAAAGTGAAAAGACAA+AGG 0.645779 tig0022240:+66284 Msa1398090:CDS
GGGAAAGCTCTTCAGGAACA+GGG 0.646598 tig0022240:-64150 None:intergenic
GCTAAGGGCTCAACTGACAG+AGG 0.669431 tig0022240:+66124 Msa1398090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAGTTTATTTTTTTTATTA+CGG + tig0022240:64433-64452 Msa1398090:intron 10.0%
!!! TTAATATGAAAATTTTTTTG+AGG + tig0022240:65891-65910 Msa1398090:intron 10.0%
!! TGATTATTAGTTATTATTTA+TGG + tig0022240:66494-66513 Msa1398090:intron 10.0%
!!! ACAAAATTGTTTTAAATAAT+AGG + tig0022240:66792-66811 Msa1398090:intron 10.0%
!!! TTTTAAATAATAGGAAAATT+TGG + tig0022240:66801-66820 Msa1398090:intron 10.0%
!! AAACATTTATAAAGTAACAT+TGG - tig0022240:63993-64012 None:intergenic 15.0%
!!! GTTGAATATTCAATTTTTTA+TGG - tig0022240:64666-64685 None:intergenic 15.0%
!! GATAAAATATTAAAAACTAG+AGG - tig0022240:64860-64879 None:intergenic 15.0%
!! CTGTTAAAGAAAATAATATT+AGG - tig0022240:64882-64901 None:intergenic 15.0%
!!! TATTGATATAGATGAAATTT+TGG - tig0022240:64998-65017 None:intergenic 15.0%
!! ATCAATAAATTTCTCTAATT+TGG - tig0022240:65214-65233 None:intergenic 15.0%
!! TAGTCATAAATTTATAAGAT+AGG - tig0022240:66327-66346 None:intergenic 15.0%
!! ATTTATAAAGTAACATTGGT+AGG - tig0022240:63989-64008 None:intergenic 20.0%
!!! TTGTTGAATATATGCTTTTT+AGG - tig0022240:64595-64614 None:intergenic 20.0%
!!! TTTTTATTTGTGTGACAAAA+TGG - tig0022240:64630-64649 None:intergenic 20.0%
!! ACACAAAAATATAATAAGTG+AGG + tig0022240:65179-65198 Msa1398090:intron 20.0%
!! AATTTGCCTTCAAATATATT+AGG - tig0022240:65734-65753 None:intergenic 20.0%
!!! CTTTTTTGTTTTGTTTTGTT+TGG + tig0022240:66524-66543 Msa1398090:intron 20.0%
!!! ATTTTGTAAGTTACAAATGA+GGG - tig0022240:66779-66798 None:intergenic 20.0%
!!! AATTTTGTAAGTTACAAATG+AGG - tig0022240:66780-66799 None:intergenic 20.0%
! GACAATAGTATATACCATAA+TGG + tig0022240:64062-64081 Msa1398090:intron 25.0%
! ATAAAGGAACAAAAAATACC+AGG + tig0022240:65319-65338 Msa1398090:intron 25.0%
!!! GCTTTTGATTTCAAATTTCA+AGG + tig0022240:65510-65529 Msa1398090:intron 25.0%
!!! CCTCATATTTTATTTGTTCT+AGG - tig0022240:65812-65831 None:intergenic 25.0%
! CCTAGAACAAATAAAATATG+AGG + tig0022240:65809-65828 Msa1398090:intron 25.0%
! CTCTGTATGAAAAATATGAT+GGG - tig0022240:66041-66060 None:intergenic 25.0%
! TCTCTGTATGAAAAATATGA+TGG - tig0022240:66042-66061 None:intergenic 25.0%
!!! ATTGGCTTTAATTAAAGCAT+GGG + tig0022240:66263-66282 Msa1398090:CDS 25.0%
!!! GTTTTGTTTGGTTGTAAATT+AGG + tig0022240:66536-66555 Msa1398090:intron 25.0%
! TCTAGTATAACTAAGGTTTA+GGG - tig0022240:66675-66694 None:intergenic 25.0%
! TTCTAGTATAACTAAGGTTT+AGG - tig0022240:66676-66695 None:intergenic 25.0%
! AATAGTTGAAGCTCAAAAAA+GGG + tig0022240:66903-66922 Msa1398090:CDS 25.0%
ATATACCATTGGTACCTTAA+TGG - tig0022240:63941-63960 None:intergenic 30.0%
TATAAAGTAACATTGGTAGG+TGG - tig0022240:63986-64005 None:intergenic 30.0%
ATAGCATTTGTGTACCATTA+TGG - tig0022240:64079-64098 None:intergenic 30.0%
!! GCTTTTTAGGAAAAAAGACA+GGG - tig0022240:65475-65494 None:intergenic 30.0%
!! AGCTTTTTAGGAAAAAAGAC+AGG - tig0022240:65476-65495 None:intergenic 30.0%
!!! TCTTTTTTCCTAAAAAGCTG+AGG + tig0022240:65477-65496 Msa1398090:intron 30.0%
AATCAGCATATTTCTTGTAG+TGG + tig0022240:65661-65680 Msa1398090:CDS 30.0%
CTATCTGGTCTAAATTGTTA+AGG + tig0022240:65692-65711 Msa1398090:intron 30.0%
GATCGACCTAATATATTTGA+AGG + tig0022240:65725-65744 Msa1398090:intron 30.0%
CTAATCGTAAATGTTTCTCT+AGG - tig0022240:65855-65874 None:intergenic 30.0%
AGATGATCATGCTGATAATA+AGG + tig0022240:66072-66091 Msa1398090:CDS 30.0%
ATGCTGATAATAAGGAAACT+GGG + tig0022240:66080-66099 Msa1398090:CDS 30.0%
! TAGCATCCTTTTTATCATCA+TGG - tig0022240:66108-66127 None:intergenic 30.0%
TGATGATAAAAAGGATGCTA+AGG + tig0022240:66108-66127 Msa1398090:CDS 30.0%
GATGATAAAAAGGATGCTAA+GGG + tig0022240:66109-66128 Msa1398090:CDS 30.0%
! ATTTTGTTGCATTAGATGCT+GGG + tig0022240:66214-66233 Msa1398090:intron 30.0%
AATTGTAGCAGAGAAAAGAT+TGG + tig0022240:66245-66264 Msa1398090:CDS 30.0%
!! GATTGGCTTTAATTAAAGCA+TGG + tig0022240:66262-66281 Msa1398090:CDS 30.0%
AAAAGACAAAGGCAGAAAAT+AGG + tig0022240:66295-66314 Msa1398090:CDS 30.0%
AAGCAAGAAATCATCTATAG+AGG + tig0022240:66450-66469 Msa1398090:CDS 30.0%
GATCTCTTCTAGTATAACTA+AGG - tig0022240:66682-66701 None:intergenic 30.0%
GATGAATAAAGTGAGATTGT+GGG - tig0022240:66720-66739 None:intergenic 30.0%
TGATGAATAAAGTGAGATTG+TGG - tig0022240:66721-66740 None:intergenic 30.0%
CAATAGTTGAAGCTCAAAAA+AGG + tig0022240:66902-66921 Msa1398090:CDS 30.0%
AAGCATGCAAACAATTTCTT+TGG - tig0022240:66985-67004 None:intergenic 30.0%
ATTCCACTTGTGTACCATTA+AGG + tig0022240:63924-63943 Msa1398090:CDS 35.0%
GTACCAATGGTATATACCAT+TGG + tig0022240:63946-63965 Msa1398090:intron 35.0%
GTCACATGTCACATTCTAAT+TGG + tig0022240:64040-64059 Msa1398090:intron 35.0%
!!! TGATTCAGTTTTGTTGATGC+TGG - tig0022240:64107-64126 None:intergenic 35.0%
!! TCTTTGCTAAGCTTGGTTTT+TGG - tig0022240:65074-65093 None:intergenic 35.0%
ATGTTGAATAGTAGAGTGTG+TGG + tig0022240:65232-65251 Msa1398090:intron 35.0%
CTAACACTGATGAATGAAAC+CGG + tig0022240:65287-65306 Msa1398090:intron 35.0%
AAACCGGACTGCAAATATAA+AGG + tig0022240:65303-65322 Msa1398090:intron 35.0%
GTTCCTTTATATTTGCAGTC+CGG - tig0022240:65309-65328 None:intergenic 35.0%
AAAAGACAGGGAAAATACCA+GGG - tig0022240:65463-65482 None:intergenic 35.0%
AAAAAGACAGGGAAAATACC+AGG - tig0022240:65464-65483 None:intergenic 35.0%
! TTTCAAGGTTGTTTAAAGCC+AGG + tig0022240:65525-65544 Msa1398090:intron 35.0%
! TTCAAGGTTGTTTAAAGCCA+GGG + tig0022240:65526-65545 Msa1398090:intron 35.0%
!! ATTTGCCAAGGATTTTGACA+GGG - tig0022240:65644-65663 None:intergenic 35.0%
!! AGAAATATGCTGATTTGCCA+AGG - tig0022240:65656-65675 None:intergenic 35.0%
AAATTGTTAAGGTCATCGTC+AGG + tig0022240:65703-65722 Msa1398090:intron 35.0%
!! GCTTTAGGCTTCGAAATTTT+TGG - tig0022240:65928-65947 None:intergenic 35.0%
CATGCTGATAATAAGGAAAC+TGG + tig0022240:66079-66098 Msa1398090:CDS 35.0%
TGCTGATAATAAGGAAACTG+GGG + tig0022240:66081-66100 Msa1398090:CDS 35.0%
! CATTTTGTTGCATTAGATGC+TGG + tig0022240:66213-66232 Msa1398090:intron 35.0%
GGAAGAAAGTGAAAAGACAA+AGG + tig0022240:66284-66303 Msa1398090:CDS 35.0%
GAGCTTGATGAAAGATGAAA+TGG + tig0022240:66380-66399 Msa1398090:intron 35.0%
AAAGATGAAATGGTCACACA+GGG + tig0022240:66390-66409 Msa1398090:intron 35.0%
TACAAGAAGCAATCTTCTGT+TGG + tig0022240:66415-66434 Msa1398090:CDS 35.0%
AGCAATCTTCTGTTGGATTA+TGG + tig0022240:66422-66441 Msa1398090:CDS 35.0%
GCAATCTTCTGTTGGATTAT+GGG + tig0022240:66423-66442 Msa1398090:CDS 35.0%
TCAAAAAAGGGAAGAATGTC+TGG + tig0022240:66915-66934 Msa1398090:CDS 35.0%
! AGAATCAGAAGGTTCTAGCA+TGG + tig0022240:63901-63920 Msa1398090:CDS 40.0%
GTACCTTAATGGTACACAAG+TGG - tig0022240:63930-63949 None:intergenic 40.0%
! GTGTACCATTAAGGTACCAA+TGG + tig0022240:63933-63952 Msa1398090:intron 40.0%
TGGCCAATGGTATATACCAT+TGG - tig0022240:63952-63971 None:intergenic 40.0%
!!! CAGTTTTGTTGATGCTGGAA+CGG - tig0022240:64102-64121 None:intergenic 40.0%
! TGATTCCTTTTCCACAACAG+GGG - tig0022240:64173-64192 None:intergenic 40.0%
! CTGATTCCTTTTCCACAACA+GGG - tig0022240:64174-64193 None:intergenic 40.0%
! TCTGATTCCTTTTCCACAAC+AGG - tig0022240:64175-64194 None:intergenic 40.0%
AAGCAATATCAGTATCAGCC+AGG + tig0022240:64201-64220 Msa1398090:CDS 40.0%
GTTCTTCATCAAGCTTCAAC+AGG - tig0022240:65047-65066 None:intergenic 40.0%
AGTAGAGTGTGTGGAGAAAA+TGG + tig0022240:65241-65260 Msa1398090:intron 40.0%
TTTCCTAAAAAGCTGAGGCA+TGG + tig0022240:65482-65501 Msa1398090:intron 40.0%
! TCAAGGTTGTTTAAAGCCAG+GGG + tig0022240:65527-65546 Msa1398090:intron 40.0%
!! TTTGCCAAGGATTTTGACAG+GGG - tig0022240:65643-65662 None:intergenic 40.0%
!! GATTTGCCAAGGATTTTGAC+AGG - tig0022240:65645-65664 None:intergenic 40.0%
GAAGCCTAAAGCCATAACTT+GGG + tig0022240:65936-65955 Msa1398090:intron 40.0%
TGGGGACCATGATGATAAAA+AGG + tig0022240:66099-66118 Msa1398090:CDS 40.0%
ACAAAGGCAGAAAATAGGCA+AGG + tig0022240:66300-66319 Msa1398090:intron 40.0%
CAAAGGCAGAAAATAGGCAA+GGG + tig0022240:66301-66320 Msa1398090:intron 40.0%
GAAAGATGAAATGGTCACAC+AGG + tig0022240:66389-66408 Msa1398090:intron 40.0%
ATCTTCTGTTGGATTATGGG+AGG + tig0022240:66426-66445 Msa1398090:CDS 40.0%
GGCACAACTCAAGAAATTTG+AGG + tig0022240:66471-66490 Msa1398090:CDS 40.0%
! ATTTCTTTGGTGCAACTCCA+CGG - tig0022240:66972-66991 None:intergenic 40.0%
ACTGATATTGCCTGCTGAGT+AGG - tig0022240:64229-64248 None:intergenic 45.0%
CTGTGGTTCTTTGCTAAGCT+TGG - tig0022240:65081-65100 None:intergenic 45.0%
CAAGCTTAGCAAAGAACCAC+AGG + tig0022240:65079-65098 Msa1398090:intron 45.0%
AGTTTATTTGCCTCCTCCTG+TGG - tig0022240:65098-65117 None:intergenic 45.0%
AGAGTGTGTGGAGAAAATGG+AGG + tig0022240:65244-65263 Msa1398090:intron 45.0%
ACAGGGAAAATACCAGGGAT+TGG - tig0022240:65458-65477 None:intergenic 45.0%
! TGACCATGCCTCAGCTTTTT+AGG - tig0022240:65488-65507 None:intergenic 45.0%
! TTGTTTAAAGCCAGGGGTCA+TGG + tig0022240:65533-65552 Msa1398090:intron 45.0%
AACCCCTGGCAAATTTGACA+GGG - tig0022240:65578-65597 None:intergenic 45.0%
GTAGTGGCTTCACTTCTATC+TGG + tig0022240:65677-65696 Msa1398090:CDS 45.0%
CGAAGCCTAAAGCCATAACT+TGG + tig0022240:65935-65954 Msa1398090:intron 45.0%
GCAACCCAAGTTATGGCTTT+AGG - tig0022240:65943-65962 None:intergenic 45.0%
! AAGCCATAACTTGGGTTGCA+TGG + tig0022240:65944-65963 Msa1398090:intron 45.0%
! AGTGATCATGGTTGGTGCAA+GGG - tig0022240:65970-65989 None:intergenic 45.0%
GAAAGCTCATGCAGTGATCA+TGG - tig0022240:65982-66001 None:intergenic 45.0%
CGACACATTTCAGTTCCACA+AGG - tig0022240:66599-66618 None:intergenic 45.0%
CGAACTTGTGCATGTAACAG+AGG - tig0022240:66644-66663 None:intergenic 45.0%
!!! TATTTGATATATTTTTTTAA+AGG + tig0022240:64013-64032 Msa1398090:intron 5.0%
!!! ATTTGATATATTTTTTTAAA+GGG + tig0022240:64014-64033 Msa1398090:intron 5.0%
!!! GAATAAATTTTTTATTTTAA+AGG - tig0022240:65769-65788 None:intergenic 5.0%
GGCACACTCTAATTGGCCAA+TGG - tig0022240:63965-63984 None:intergenic 50.0%
GGTAGGTGGCACACTCTAAT+TGG - tig0022240:63972-63991 None:intergenic 50.0%
ACCACAGCTACAGTCTCTTC+TGG + tig0022240:64126-64145 Msa1398090:CDS 50.0%
TCCAGAAGAGACTGTAGCTG+TGG - tig0022240:64130-64149 None:intergenic 50.0%
GGGAAAGCTCTTCAGGAACA+GGG - tig0022240:64153-64172 None:intergenic 50.0%
ACAACAGGGGAAAGCTCTTC+AGG - tig0022240:64160-64179 None:intergenic 50.0%
TGAAGAGCTTTCCCCTGTTG+TGG + tig0022240:64159-64178 Msa1398090:CDS 50.0%
GCTTTCCCCTGTTGTGGAAA+AGG + tig0022240:64165-64184 Msa1398090:CDS 50.0%
GCTTAGCAAAGAACCACAGG+AGG + tig0022240:65082-65101 Msa1398090:intron 50.0%
TAGCAAAGAACCACAGGAGG+AGG + tig0022240:65085-65104 Msa1398090:intron 50.0%
GTAGGTCGTCGTATATCTCC+TGG - tig0022240:65340-65359 None:intergenic 50.0%
! CTCACAAATGGCTTGCAGCA+GGG - tig0022240:65433-65452 None:intergenic 50.0%
CTGCTGCAAGCCATTTGTGA+GGG + tig0022240:65432-65451 Msa1398090:intron 50.0%
TCACAAATTGCCATGACCCC+TGG - tig0022240:65546-65565 None:intergenic 50.0%
GGGGTCATGGCAATTTGTGA+CGG + tig0022240:65546-65565 Msa1398090:intron 50.0%
GGGTCATGGCAATTTGTGAC+GGG + tig0022240:65547-65566 Msa1398090:intron 50.0%
TCACCCCTGTCAAATTTGCC+AGG + tig0022240:65571-65590 Msa1398090:intron 50.0%
CACCCCTGTCAAATTTGCCA+GGG + tig0022240:65572-65591 Msa1398090:intron 50.0%
ACCCCTGTCAAATTTGCCAG+GGG + tig0022240:65573-65592 Msa1398090:intron 50.0%
ACCCCTGGCAAATTTGACAG+GGG - tig0022240:65577-65596 None:intergenic 50.0%
GAACCCCTGGCAAATTTGAC+AGG - tig0022240:65579-65598 None:intergenic 50.0%
AATTTGCCAGGGGTTCTCCT+TGG + tig0022240:65583-65602 Msa1398090:intron 50.0%
AACCCCTGGCAAATTTCCCA+GGG - tig0022240:65615-65634 None:intergenic 50.0%
AAACCCCTGGCAAATTTCCC+AGG - tig0022240:65616-65635 None:intergenic 50.0%
CATGCCCCTGTCAAAATCCT+TGG + tig0022240:65636-65655 Msa1398090:CDS 50.0%
! CAGTGATCATGGTTGGTGCA+AGG - tig0022240:65971-65990 None:intergenic 50.0%
GCTCATGCAGTGATCATGGT+TGG - tig0022240:65978-65997 None:intergenic 50.0%
GACAAATCTCTCGAGCCTTG+TGG + tig0022240:66581-66600 Msa1398090:intron 50.0%
! GGAAGAATGTCTGGAGCTAG+AGG + tig0022240:66924-66943 Msa1398090:CDS 50.0%
GGGGAAAGCTCTTCAGGAAC+AGG - tig0022240:64154-64173 None:intergenic 55.0%
! CCTCACAAATGGCTTGCAGC+AGG - tig0022240:65434-65453 None:intergenic 55.0%
CCTGCTGCAAGCCATTTGTG+AGG + tig0022240:65431-65450 Msa1398090:intron 55.0%
!! CAGGGATTGGCCCTCACAAA+TGG - tig0022240:65445-65464 None:intergenic 55.0%
CATTTGTGAGGGCCAATCCC+TGG + tig0022240:65443-65462 Msa1398090:intron 55.0%
TTCTCCTTGGCTTAGGCCCT+GGG + tig0022240:65596-65615 Msa1398090:intron 55.0%
ATTTCCCAGGGCCTAAGCCA+AGG - tig0022240:65603-65622 None:intergenic 55.0%
TAGGCCCTGGGAAATTTGCC+AGG + tig0022240:65608-65627 Msa1398090:intron 55.0%
AGGCCCTGGGAAATTTGCCA+GGG + tig0022240:65609-65628 Msa1398090:intron 55.0%
GGGCCATGCAACCCAAGTTA+TGG - tig0022240:65950-65969 None:intergenic 55.0%
GCTAAGGGCTCAACTGACAG+AGG + tig0022240:66124-66143 Msa1398090:CDS 55.0%
GCTGCAAAGTTTCGTAGCCG+TGG + tig0022240:66952-66971 Msa1398090:CDS 55.0%
TTGCCTGCTGAGTAGGCTCC+TGG - tig0022240:64222-64241 None:intergenic 60.0%
CCAGCTGACAACACAGGGGT+AGG - tig0022240:65358-65377 None:intergenic 60.0%
CCTACCCCTGTGTTGTCAGC+TGG + tig0022240:65355-65374 Msa1398090:intron 60.0%
CCTGCCAGCTGACAACACAG+GGG - tig0022240:65362-65381 None:intergenic 60.0%
GCCTGCCAGCTGACAACACA+GGG - tig0022240:65363-65382 None:intergenic 60.0%
TGCCTGCCAGCTGACAACAC+AGG - tig0022240:65364-65383 None:intergenic 60.0%
CCTAAGCCAAGGAGAACCCC+TGG - tig0022240:65592-65611 None:intergenic 60.0%
CCAGGGGTTCTCCTTGGCTT+AGG + tig0022240:65589-65608 Msa1398090:intron 60.0%
GTTCTCCTTGGCTTAGGCCC+TGG + tig0022240:65595-65614 Msa1398090:intron 60.0%
GGCCCTGGGAAATTTGCCAG+GGG + tig0022240:65610-65629 Msa1398090:intron 60.0%
! TGACAGGGGCATGAAACCCC+TGG - tig0022240:65629-65648 None:intergenic 60.0%
CAGCCAGGAGCCTACTCAGC+AGG + tig0022240:64216-64235 Msa1398090:CDS 65.0%
CCCCTGTGTTGTCAGCTGGC+AGG + tig0022240:65359-65378 Msa1398090:intron 65.0%
Chromosome Type Strat End Strand Name
tig0022240 gene 63896 67014 63896 ID=Msa1398090;Name=Msa1398090
tig0022240 mRNA 63896 67014 63896 ID=Msa1398090-mRNA-1;Parent=Msa1398090;Name=Msa1398090-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|0.57|1|1|7|0|244
tig0022240 exon 63896 63945 63896 ID=Msa1398090-mRNA-1:exon:16433;Parent=Msa1398090-mRNA-1
tig0022240 exon 64108 64246 64108 ID=Msa1398090-mRNA-1:exon:16434;Parent=Msa1398090-mRNA-1
tig0022240 exon 65611 65698 65611 ID=Msa1398090-mRNA-1:exon:16435;Parent=Msa1398090-mRNA-1
tig0022240 exon 66059 66145 66059 ID=Msa1398090-mRNA-1:exon:16436;Parent=Msa1398090-mRNA-1
tig0022240 exon 66229 66316 66229 ID=Msa1398090-mRNA-1:exon:16437;Parent=Msa1398090-mRNA-1
tig0022240 exon 66411 66492 66411 ID=Msa1398090-mRNA-1:exon:16438;Parent=Msa1398090-mRNA-1
tig0022240 exon 66814 67014 66814 ID=Msa1398090-mRNA-1:exon:16439;Parent=Msa1398090-mRNA-1
tig0022240 CDS 63896 63945 63896 ID=Msa1398090-mRNA-1:cds;Parent=Msa1398090-mRNA-1
tig0022240 CDS 64108 64246 64108 ID=Msa1398090-mRNA-1:cds;Parent=Msa1398090-mRNA-1
tig0022240 CDS 65611 65698 65611 ID=Msa1398090-mRNA-1:cds;Parent=Msa1398090-mRNA-1
tig0022240 CDS 66059 66145 66059 ID=Msa1398090-mRNA-1:cds;Parent=Msa1398090-mRNA-1
tig0022240 CDS 66229 66316 66229 ID=Msa1398090-mRNA-1:cds;Parent=Msa1398090-mRNA-1
tig0022240 CDS 66411 66492 66411 ID=Msa1398090-mRNA-1:cds;Parent=Msa1398090-mRNA-1
tig0022240 CDS 66814 67014 66814 ID=Msa1398090-mRNA-1:cds;Parent=Msa1398090-mRNA-1
Gene Sequence

>Msa1398090

ATGGGAGAATCAGAAGGTTCTAGCATGGATTCCACTTGTGTACCATTAAGCATCAACAAAACTGAATCACCACAGCTACAGTCTCTTCTGGACCCTGTTCCTGAAGAGCTTTCCCCTGTTGTGGAAAAGGAATCAGATACTCAAAGCAATATCAGTATCAGCCAGGAGCCTACTCAGCAGGCAATATCAGCCCTGGGAAATTTGCCAGGGGTTTCATGCCCCTGTCAAAATCCTTGGCAAATCAGCATATTTCTTGTAGTGGCTTCACTTCTATCTGAGATTGCAGTCGTAGATGATCATGCTGATAATAAGGAAACTGGGGACCATGATGATAAAAAGGATGCTAAGGGCTCAACTGACAGAGATGCTGGGCTTGCAAAAATTGTAGCAGAGAAAAGATTGGCTTTAATTAAAGCATGGGAAGAAAGTGAAAAGACAAAGGCAGAAAATAGGGCATACAAGAAGCAATCTTCTGTTGGATTATGGGAGGAAAGCAAGAAATCATCTATAGAGGCACAACTCAAGAAATTTGAGGAAAATTTGGAAAGAAAGAAAGTTGAGTATATTTCAAAAATGAAAAATGAACTAGCTGAAATTCATCAATATGCTGAAGAGAAAAGAGCAATAGTTGAAGCTCAAAAAAGGGAAGAATGTCTGGAGCTAGAGGAAACAGCTGCAAAGTTTCGTAGCCGTGGAGTTGCACCAAAGAAATTGTTTGCATGCTTTAGCGCTTAA

Protein sequence

>Msa1398090

MGESEGSSMDSTCVPLSINKTESPQLQSLLDPVPEELSPVVEKESDTQSNISISQEPTQQAISALGNLPGVSCPCQNPWQISIFLVVASLLSEIAVVDDHADNKETGDHDDKKDAKGSTDRDAGLAKIVAEKRLALIKAWEESEKTKAENRAYKKQSSVGLWEESKKSSIEAQLKKFEENLERKKVEYISKMKNELAEIHQYAEEKRAIVEAQKREECLELEETAAKFRSRGVAPKKLFACFSA*