AlfalfaGEDB | Msa0721280

M. sativa cultivar zhongmu-4 / Msa0721280

KEGG: -
GO: -
PFAM: PF03763.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0721280	XP_003611121.1	81.818	187	31	2	3	187	24	209	1.03e-96	289

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0721280	sp\|P93788\|REMO_SOLTU	59.398	133	52	1	53	185	68	198	3.70e-47	155

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0721280	G7KDE4	81.818	187	31	2	3	187	24	209	4.92e-97	289

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0721280	0.806609	7.569742e-50	-8.615850e-47
Msa0002680	Msa0721280	0.812708	3.700790e-51	-8.615850e-47
Msa0002710	Msa0721280	0.827986	1.155463e-54	-8.615850e-47
Msa0003220	Msa0721280	0.809798	1.583260e-50	-8.615850e-47
Msa0003400	Msa0721280	0.827659	1.384291e-54	-8.615850e-47
Msa0003630	Msa0721280	0.816976	4.189633e-52	-8.615850e-47
Msa0003890	Msa0721280	0.816993	4.152417e-52	-8.615850e-47
Msa0004840	Msa0721280	0.841492	4.598526e-58	-8.615850e-47
Msa0005270	Msa0721280	0.855328	6.790900e-62	-8.615850e-47
Msa0006110	Msa0721280	0.849385	3.345906e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0721280	MtrunA17_Chr5g0397781	81.818	187	31	2	3	187	24	209	9.48e-101	289
Msa0721280	MtrunA17_Chr8g0386521	48.958	192	93	1	1	187	9	200	9.81e-55	172
Msa0721280	MtrunA17_Chr1g0203401	57.937	126	53	0	60	185	84	209	1.29e-44	147
Msa0721280	MtrunA17_Chr8g0349271	59.524	126	51	0	60	185	75	200	8.09e-44	144
Msa0721280	MtrunA17_Chr7g0247121	50.769	65	32	0	121	185	34	98	7.43e-16	69.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0721280	AT5G23750.2	60.317	126	50	0	60	185	76	201	3.38e-48	156
Msa0721280	AT5G23750.3	60.317	126	50	0	60	185	104	229	3.69e-48	157
Msa0721280	AT5G23750.1	60.317	126	50	0	60	185	77	202	4.98e-48	155
Msa0721280	AT3G48940.1	57.937	126	53	0	60	185	50	175	3.12e-44	145
Msa0721280	AT3G61260.1	56.154	130	57	0	56	185	83	212	4.00e-43	143
Msa0721280	AT2G45820.1	50.549	182	78	4	7	185	18	190	2.95e-40	135
Msa0721280	AT1G63295.1	43.243	111	63	0	61	171	24	134	3.71e-21	85.5
Msa0721280	AT1G63295.2	43.243	111	63	0	61	171	64	174	7.32e-21	85.5
Msa0721280	AT4G00670.1	37.963	108	66	1	79	185	16	123	1.26e-17	75.5

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Find 42 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACAAAGGCAGAAAAT+AGG	0.344478	5_1:-17730313	Msa0721280:intron
AAACCCCTGGCAAATTTCCC+AGG	0.473618	5_1:+17730994	None:intergenic
AACCCCTGGCAAATTTCCCA+GGG	0.643382	5_1:+17730995	None:intergenic
AACCCCTGGCAAATTTGACA+GGG	0.645050	5_1:+17731032	None:intergenic
AAGCAAGAAATCATCTATAG+AGG	0.477360	5_1:-17730158	Msa0721280:CDS
AAGCATGCAAACAATTTCTT+TGG	0.279239	5_1:+17729626	None:intergenic
AATTGTAGCAGAGAAAAGAT+TGG	0.480532	5_1:-17730363	Msa0721280:CDS
AATTTGCCAGGGGTTCTCCT+TGG	0.455214	5_1:-17731024	Msa0721280:CDS
ACCCCTGGCAAATTTGACAG+GGG	0.717183	5_1:+17731033	None:intergenic
ACCCCTGTCAAATTTGCCAG+GGG	0.588274	5_1:-17731034	Msa0721280:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCAGCATATTTCTTGTAG+TGG	-	chr5_1:17729725-17729744	Msa0721280:CDS	30.0%
CTATCTGGTCTAAATTGTTA+AGG	-	chr5_1:17729756-17729775	Msa0721280:CDS	30.0%
GATCGACCTAATATATTTGA+AGG	-	chr5_1:17729789-17729808	Msa0721280:CDS	30.0%
CTAATCGTAAATGTTTCTCT+AGG	+	chr5_1:17729919-17729938	None:intergenic	30.0%
AGATGATCATGCTGATAATA+AGG	-	chr5_1:17730135-17730154	Msa0721280:intron	30.0%
ATGCTGATAATAAGGAAACT+GGG	-	chr5_1:17730143-17730162	Msa0721280:CDS	30.0%
TGATGATAAAAAGGATGCTA+AGG	-	chr5_1:17730171-17730190	Msa0721280:CDS	30.0%
GATGATAAAAAGGATGCTAA+GGG	-	chr5_1:17730172-17730191	Msa0721280:CDS	30.0%
AATTGTAGCAGAGAAAAGAT+TGG	-	chr5_1:17730308-17730327	Msa0721280:intron	30.0%
AAAAGACAAAGGCAGAAAAT+AGG	-	chr5_1:17730358-17730377	Msa0721280:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	17729616	17731077	17729616	ID=Msa0721280;Name=Msa0721280
chr5_1	mRNA	17729616	17731077	17729616	ID=Msa0721280-mRNA-1;Parent=Msa0721280;Name=Msa0721280-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0\|0\|0\|0.8\|1\|1\|5\|0\|187
chr5_1	exon	17730972	17731077	17730972	ID=Msa0721280-mRNA-1:exon:6792;Parent=Msa0721280-mRNA-1
chr5_1	exon	17730485	17730571	17730485	ID=Msa0721280-mRNA-1:exon:6791;Parent=Msa0721280-mRNA-1
chr5_1	exon	17730314	17730401	17730314	ID=Msa0721280-mRNA-1:exon:6790;Parent=Msa0721280-mRNA-1
chr5_1	exon	17730138	17730219	17730138	ID=Msa0721280-mRNA-1:exon:6789;Parent=Msa0721280-mRNA-1
chr5_1	exon	17729616	17729816	17729616	ID=Msa0721280-mRNA-1:exon:6788;Parent=Msa0721280-mRNA-1
chr5_1	CDS	17730972	17731077	17730972	ID=Msa0721280-mRNA-1:cds;Parent=Msa0721280-mRNA-1
chr5_1	CDS	17730485	17730571	17730485	ID=Msa0721280-mRNA-1:cds;Parent=Msa0721280-mRNA-1
chr5_1	CDS	17730314	17730401	17730314	ID=Msa0721280-mRNA-1:cds;Parent=Msa0721280-mRNA-1
chr5_1	CDS	17730138	17730219	17730138	ID=Msa0721280-mRNA-1:cds;Parent=Msa0721280-mRNA-1
chr5_1	CDS	17729616	17729816	17729616	ID=Msa0721280-mRNA-1:cds;Parent=Msa0721280-mRNA-1

Gene Sequence

>Msa0721280

ATGGCAATTTGTGACGGGCTCACCCCTGTCAAATTTGCCAGGGGTTCTCCTTGGCTTAGGCCCTGGGAAATTTGCCAGGGGTTTCATGCCCCTGTCAAAATCCTTGAGATTGCAGTCGTAGATGATCATGCTGATAATAAGGAAACTGGGGACCATGATGATAAAAAGGATGCTAAGGGCTCAACTGACAGAGATGCTGGGCTTGCAAAAATTGTAGCAGAGAAAAGATTGGCTTTAATTAAAGCATGGGAAGAAAGTGAAAAGACAAAGGCAGAAAATAGGGCATACAAGAAGCAATCTTCTGTTGGATTATGGGAGGAAAGCAAGAAATCATCTATAGAGGCACAACTCAAGAAATTTGAGGAAAATTTGGAAAGAAAGAAAGTTGAGTATATTTCAAAAATGAAAAATGAACTAGCTGAAATTCATCAATATGCTGAAGAGAAAAGAGCAATAGTTGAAGCTCAAAAAAGGGAAGAATGTCTGGAGCTAGAGGAAACAGCTGCAAAGTTTCGTAGCCGTGGAGTTGCACCAAAGAAATTGTTTGCATGCTTTAGCGCTTAA

Protein sequence

>Msa0721280

MAICDGLTPVKFARGSPWLRPWEICQGFHAPVKILEIAVVDDHADNKETGDHDDKKDAKGSTDRDAGLAKIVAEKRLALIKAWEESEKTKAENRAYKKQSSVGLWEESKKSSIEAQLKKFEENLERKKVEYISKMKNELAEIHQYAEEKRAIVEAQKREECLELEETAAKFRSRGVAPKKLFACFSA*