AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0721280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721280 MtrunA17_Chr5g0397781 81.818 187 31 2 3 187 24 209 9.48e-101 289
Msa0721280 MtrunA17_Chr8g0386521 48.958 192 93 1 1 187 9 200 9.81e-55 172
Msa0721280 MtrunA17_Chr1g0203401 57.937 126 53 0 60 185 84 209 1.29e-44 147
Msa0721280 MtrunA17_Chr8g0349271 59.524 126 51 0 60 185 75 200 8.09e-44 144
Msa0721280 MtrunA17_Chr7g0247121 50.769 65 32 0 121 185 34 98 7.43e-16 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721280 AT5G23750.2 60.317 126 50 0 60 185 76 201 3.38e-48 156
Msa0721280 AT5G23750.3 60.317 126 50 0 60 185 104 229 3.69e-48 157
Msa0721280 AT5G23750.1 60.317 126 50 0 60 185 77 202 4.98e-48 155
Msa0721280 AT3G48940.1 57.937 126 53 0 60 185 50 175 3.12e-44 145
Msa0721280 AT3G61260.1 56.154 130 57 0 56 185 83 212 4.00e-43 143
Msa0721280 AT2G45820.1 50.549 182 78 4 7 185 18 190 2.95e-40 135
Msa0721280 AT1G63295.1 43.243 111 63 0 61 171 24 134 3.71e-21 85.5
Msa0721280 AT1G63295.2 43.243 111 63 0 61 171 64 174 7.32e-21 85.5
Msa0721280 AT4G00670.1 37.963 108 66 1 79 185 16 123 1.26e-17 75.5

Find 42 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAATCTTCTGTTGGATTA+TGG 0.203365 5_1:-17730186 Msa0721280:CDS
TTCTCCTTGGCTTAGGCCCT+GGG 0.256568 5_1:-17731011 Msa0721280:CDS
GTTCTCCTTGGCTTAGGCCC+TGG 0.257787 5_1:-17731012 Msa0721280:CDS
AAGCATGCAAACAATTTCTT+TGG 0.279239 5_1:+17729626 None:intergenic
CATGCTGATAATAAGGAAAC+TGG 0.290185 5_1:-17730529 Msa0721280:CDS
TGGGGACCATGATGATAAAA+AGG 0.310600 5_1:-17730509 Msa0721280:CDS
GCAATCTTCTGTTGGATTAT+GGG 0.326593 5_1:-17730185 Msa0721280:CDS
AAAAGACAAAGGCAGAAAAT+AGG 0.344478 5_1:-17730313 Msa0721280:intron
AGATGATCATGCTGATAATA+AGG 0.352782 5_1:-17730536 Msa0721280:CDS
CCAGGGGTTCTCCTTGGCTT+AGG 0.369590 5_1:-17731018 Msa0721280:CDS
TAGGCCCTGGGAAATTTGCC+AGG 0.386597 5_1:-17730999 Msa0721280:CDS
TCACCCCTGTCAAATTTGCC+AGG 0.399983 5_1:-17731036 Msa0721280:CDS
AATTTGCCAGGGGTTCTCCT+TGG 0.455214 5_1:-17731024 Msa0721280:CDS
CATGCCCCTGTCAAAATCCT+TGG 0.463620 5_1:-17730971 Msa0721280:intron
AAACCCCTGGCAAATTTCCC+AGG 0.473618 5_1:+17730994 None:intergenic
TACAAGAAGCAATCTTCTGT+TGG 0.476983 5_1:-17730193 Msa0721280:CDS
AAGCAAGAAATCATCTATAG+AGG 0.477360 5_1:-17730158 Msa0721280:CDS
AATTGTAGCAGAGAAAAGAT+TGG 0.480532 5_1:-17730363 Msa0721280:CDS
GAACCCCTGGCAAATTTGAC+AGG 0.487889 5_1:+17731031 None:intergenic
CACCCCTGTCAAATTTGCCA+GGG 0.488641 5_1:-17731035 Msa0721280:CDS
ATTGGCTTTAATTAAAGCAT+GGG 0.513985 5_1:-17730345 Msa0721280:CDS
GGGGTCATGGCAATTTGTGA+CGG 0.520511 5_1:-17731061 None:intergenic
GATTGGCTTTAATTAAAGCA+TGG 0.523135 5_1:-17730346 Msa0721280:CDS
TGACAGGGGCATGAAACCCC+TGG 0.531695 5_1:+17730981 None:intergenic
CCTAAGCCAAGGAGAACCCC+TGG 0.535373 5_1:+17731018 None:intergenic
AGGCCCTGGGAAATTTGCCA+GGG 0.546307 5_1:-17730998 Msa0721280:CDS
GGCACAACTCAAGAAATTTG+AGG 0.555597 5_1:-17730137 Msa0721280:intron
GGGTCATGGCAATTTGTGAC+GGG 0.559988 5_1:-17731060 None:intergenic
ATGCTGATAATAAGGAAACT+GGG 0.564807 5_1:-17730528 Msa0721280:CDS
GGAAGAATGTCTGGAGCTAG+AGG 0.585162 5_1:-17729684 Msa0721280:CDS
ACCCCTGTCAAATTTGCCAG+GGG 0.588274 5_1:-17731034 Msa0721280:CDS
ATTTCTTTGGTGCAACTCCA+CGG 0.591194 5_1:+17729639 None:intergenic
GGCCCTGGGAAATTTGCCAG+GGG 0.594709 5_1:-17730997 Msa0721280:CDS
GCTGCAAAGTTTCGTAGCCG+TGG 0.595886 5_1:-17729656 Msa0721280:CDS
ATCTTCTGTTGGATTATGGG+AGG 0.596122 5_1:-17730182 Msa0721280:CDS
ATTTCCCAGGGCCTAAGCCA+AGG 0.605364 5_1:+17731007 None:intergenic
TGCTGATAATAAGGAAACTG+GGG 0.627976 5_1:-17730527 Msa0721280:CDS
AACCCCTGGCAAATTTCCCA+GGG 0.643382 5_1:+17730995 None:intergenic
AACCCCTGGCAAATTTGACA+GGG 0.645050 5_1:+17731032 None:intergenic
GGAAGAAAGTGAAAAGACAA+AGG 0.645779 5_1:-17730324 Msa0721280:CDS
GCTAAGGGCTCAACTGACAG+AGG 0.669431 5_1:-17730484 Msa0721280:intron
ACCCCTGGCAAATTTGACAG+GGG 0.717183 5_1:+17731033 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATTATTAGTTATTATTTA+TGG - chr5_1:17730557-17730576 Msa0721280:intron 10.0%
!!! ACAAAATTGTTTTAAATAAT+AGG - chr5_1:17730855-17730874 Msa0721280:intron 10.0%
!!! TTTTAAATAATAGGAAAATT+TGG - chr5_1:17730864-17730883 Msa0721280:intron 10.0%
!! TGATTATTAGTTATTATTTA+TGG - chr5_1:17730557-17730576 Msa0721280:intron 10.0%
!!! ACAAAATTGTTTTAAATAAT+AGG - chr5_1:17730855-17730874 Msa0721280:intron 10.0%
!!! TTTTAAATAATAGGAAAATT+TGG - chr5_1:17730864-17730883 Msa0721280:intron 10.0%
!!! GTTAATATGAAATTTTTTTG+AGG - chr5_1:17729954-17729973 Msa0721280:intron 15.0%
!! TAGTCATAAATTTATAAGAT+AGG + chr5_1:17730390-17730409 None:intergenic 15.0%
!!! GTTAATATGAAATTTTTTTG+AGG - chr5_1:17729954-17729973 Msa0721280:intron 15.0%
!! TAGTCATAAATTTATAAGAT+AGG + chr5_1:17730390-17730409 None:intergenic 15.0%
!! AATTTGCCTTCAAATATATT+AGG + chr5_1:17729798-17729817 None:intergenic 20.0%
!!! CTTTTTTGTTTTGTTTTGTT+TGG - chr5_1:17730587-17730606 Msa0721280:intron 20.0%
!!! ATTTTGTAAGTTACAAATGA+GGG + chr5_1:17730842-17730861 None:intergenic 20.0%
!!! AATTTTGTAAGTTACAAATG+AGG + chr5_1:17730843-17730862 None:intergenic 20.0%
!! AATTTGCCTTCAAATATATT+AGG + chr5_1:17729798-17729817 None:intergenic 20.0%
!!! CTTTTTTGTTTTGTTTTGTT+TGG - chr5_1:17730587-17730606 Msa0721280:intron 20.0%
!!! ATTTTGTAAGTTACAAATGA+GGG + chr5_1:17730842-17730861 None:intergenic 20.0%
!!! AATTTTGTAAGTTACAAATG+AGG + chr5_1:17730843-17730862 None:intergenic 20.0%
!!! CCTCATATTTTATTTGTTCT+AGG + chr5_1:17729876-17729895 None:intergenic 25.0%
! CCTAGAACAAATAAAATATG+AGG - chr5_1:17729873-17729892 Msa0721280:intron 25.0%
! CTCTGTATGAAAAATATGAT+GGG + chr5_1:17730104-17730123 None:intergenic 25.0%
! TCTCTGTATGAAAAATATGA+TGG + chr5_1:17730105-17730124 None:intergenic 25.0%
!!! ATTGGCTTTAATTAAAGCAT+GGG - chr5_1:17730326-17730345 Msa0721280:CDS 25.0%
!!! GTTTTGTTTGGTTGTAAATT+AGG - chr5_1:17730599-17730618 Msa0721280:intron 25.0%
! TCTAGTATAACTAAGGTTTA+GGG + chr5_1:17730738-17730757 None:intergenic 25.0%
! TTCTAGTATAACTAAGGTTT+AGG + chr5_1:17730739-17730758 None:intergenic 25.0%
! AATAGTTGAAGCTCAAAAAA+GGG - chr5_1:17730966-17730985 Msa0721280:intron 25.0%
!!! CCTCATATTTTATTTGTTCT+AGG + chr5_1:17729876-17729895 None:intergenic 25.0%
! CCTAGAACAAATAAAATATG+AGG - chr5_1:17729873-17729892 Msa0721280:intron 25.0%
! CTCTGTATGAAAAATATGAT+GGG + chr5_1:17730104-17730123 None:intergenic 25.0%
! TCTCTGTATGAAAAATATGA+TGG + chr5_1:17730105-17730124 None:intergenic 25.0%
!!! ATTGGCTTTAATTAAAGCAT+GGG - chr5_1:17730326-17730345 Msa0721280:CDS 25.0%
!!! GTTTTGTTTGGTTGTAAATT+AGG - chr5_1:17730599-17730618 Msa0721280:intron 25.0%
! TCTAGTATAACTAAGGTTTA+GGG + chr5_1:17730738-17730757 None:intergenic 25.0%
! TTCTAGTATAACTAAGGTTT+AGG + chr5_1:17730739-17730758 None:intergenic 25.0%
! AATAGTTGAAGCTCAAAAAA+GGG - chr5_1:17730966-17730985 Msa0721280:intron 25.0%
AATCAGCATATTTCTTGTAG+TGG - chr5_1:17729725-17729744 Msa0721280:CDS 30.0%
CTATCTGGTCTAAATTGTTA+AGG - chr5_1:17729756-17729775 Msa0721280:CDS 30.0%
GATCGACCTAATATATTTGA+AGG - chr5_1:17729789-17729808 Msa0721280:CDS 30.0%
CTAATCGTAAATGTTTCTCT+AGG + chr5_1:17729919-17729938 None:intergenic 30.0%
AGATGATCATGCTGATAATA+AGG - chr5_1:17730135-17730154 Msa0721280:intron 30.0%
ATGCTGATAATAAGGAAACT+GGG - chr5_1:17730143-17730162 Msa0721280:CDS 30.0%
! TAGCATCCTTTTTATCATCA+TGG + chr5_1:17730171-17730190 None:intergenic 30.0%
TGATGATAAAAAGGATGCTA+AGG - chr5_1:17730171-17730190 Msa0721280:CDS 30.0%
GATGATAAAAAGGATGCTAA+GGG - chr5_1:17730172-17730191 Msa0721280:CDS 30.0%
! ATTTTGTTGCATTAGATGCT+GGG - chr5_1:17730277-17730296 Msa0721280:intron 30.0%
AATTGTAGCAGAGAAAAGAT+TGG - chr5_1:17730308-17730327 Msa0721280:intron 30.0%
!! GATTGGCTTTAATTAAAGCA+TGG - chr5_1:17730325-17730344 Msa0721280:CDS 30.0%
AAAAGACAAAGGCAGAAAAT+AGG - chr5_1:17730358-17730377 Msa0721280:CDS 30.0%
AAGCAAGAAATCATCTATAG+AGG - chr5_1:17730513-17730532 Msa0721280:CDS 30.0%
GATCTCTTCTAGTATAACTA+AGG + chr5_1:17730745-17730764 None:intergenic 30.0%
GATGAATAAAGTGAGATTGT+GGG + chr5_1:17730783-17730802 None:intergenic 30.0%
TGATGAATAAAGTGAGATTG+TGG + chr5_1:17730784-17730803 None:intergenic 30.0%
CAATAGTTGAAGCTCAAAAA+AGG - chr5_1:17730965-17730984 Msa0721280:intron 30.0%
AAGCATGCAAACAATTTCTT+TGG + chr5_1:17731048-17731067 None:intergenic 30.0%
AATCAGCATATTTCTTGTAG+TGG - chr5_1:17729725-17729744 Msa0721280:CDS 30.0%
CTATCTGGTCTAAATTGTTA+AGG - chr5_1:17729756-17729775 Msa0721280:CDS 30.0%
GATCGACCTAATATATTTGA+AGG - chr5_1:17729789-17729808 Msa0721280:CDS 30.0%
CTAATCGTAAATGTTTCTCT+AGG + chr5_1:17729919-17729938 None:intergenic 30.0%
AGATGATCATGCTGATAATA+AGG - chr5_1:17730135-17730154 Msa0721280:intron 30.0%
ATGCTGATAATAAGGAAACT+GGG - chr5_1:17730143-17730162 Msa0721280:CDS 30.0%
! TAGCATCCTTTTTATCATCA+TGG + chr5_1:17730171-17730190 None:intergenic 30.0%
TGATGATAAAAAGGATGCTA+AGG - chr5_1:17730171-17730190 Msa0721280:CDS 30.0%
GATGATAAAAAGGATGCTAA+GGG - chr5_1:17730172-17730191 Msa0721280:CDS 30.0%
! ATTTTGTTGCATTAGATGCT+GGG - chr5_1:17730277-17730296 Msa0721280:intron 30.0%
AATTGTAGCAGAGAAAAGAT+TGG - chr5_1:17730308-17730327 Msa0721280:intron 30.0%
!! GATTGGCTTTAATTAAAGCA+TGG - chr5_1:17730325-17730344 Msa0721280:CDS 30.0%
AAAAGACAAAGGCAGAAAAT+AGG - chr5_1:17730358-17730377 Msa0721280:CDS 30.0%
AAGCAAGAAATCATCTATAG+AGG - chr5_1:17730513-17730532 Msa0721280:CDS 30.0%
GATCTCTTCTAGTATAACTA+AGG + chr5_1:17730745-17730764 None:intergenic 30.0%
GATGAATAAAGTGAGATTGT+GGG + chr5_1:17730783-17730802 None:intergenic 30.0%
TGATGAATAAAGTGAGATTG+TGG + chr5_1:17730784-17730803 None:intergenic 30.0%
CAATAGTTGAAGCTCAAAAA+AGG - chr5_1:17730965-17730984 Msa0721280:intron 30.0%
AAGCATGCAAACAATTTCTT+TGG + chr5_1:17731048-17731067 None:intergenic 30.0%
!! ATTTGCCAAGGATTTTGACA+GGG + chr5_1:17729708-17729727 None:intergenic 35.0%
!! AGAAATATGCTGATTTGCCA+AGG + chr5_1:17729720-17729739 None:intergenic 35.0%
AAATTGTTAAGGTCATCGTC+AGG - chr5_1:17729767-17729786 Msa0721280:CDS 35.0%
!! GCTTTAGGCTTCGAAATTTT+TGG + chr5_1:17729991-17730010 None:intergenic 35.0%
CATGCTGATAATAAGGAAAC+TGG - chr5_1:17730142-17730161 Msa0721280:CDS 35.0%
TGCTGATAATAAGGAAACTG+GGG - chr5_1:17730144-17730163 Msa0721280:CDS 35.0%
! CATTTTGTTGCATTAGATGC+TGG - chr5_1:17730276-17730295 Msa0721280:intron 35.0%
GGAAGAAAGTGAAAAGACAA+AGG - chr5_1:17730347-17730366 Msa0721280:CDS 35.0%
GAGCTTGATGAAAGATGAAA+TGG - chr5_1:17730443-17730462 Msa0721280:intron 35.0%
AAAGATGAAATGGTCACACA+GGG - chr5_1:17730453-17730472 Msa0721280:intron 35.0%
TACAAGAAGCAATCTTCTGT+TGG - chr5_1:17730478-17730497 Msa0721280:intron 35.0%
AGCAATCTTCTGTTGGATTA+TGG - chr5_1:17730485-17730504 Msa0721280:CDS 35.0%
GCAATCTTCTGTTGGATTAT+GGG - chr5_1:17730486-17730505 Msa0721280:CDS 35.0%
TCAAAAAAGGGAAGAATGTC+TGG - chr5_1:17730978-17730997 Msa0721280:CDS 35.0%
!! ATTTGCCAAGGATTTTGACA+GGG + chr5_1:17729708-17729727 None:intergenic 35.0%
!! AGAAATATGCTGATTTGCCA+AGG + chr5_1:17729720-17729739 None:intergenic 35.0%
AAATTGTTAAGGTCATCGTC+AGG - chr5_1:17729767-17729786 Msa0721280:CDS 35.0%
!! GCTTTAGGCTTCGAAATTTT+TGG + chr5_1:17729991-17730010 None:intergenic 35.0%
CATGCTGATAATAAGGAAAC+TGG - chr5_1:17730142-17730161 Msa0721280:CDS 35.0%
TGCTGATAATAAGGAAACTG+GGG - chr5_1:17730144-17730163 Msa0721280:CDS 35.0%
! CATTTTGTTGCATTAGATGC+TGG - chr5_1:17730276-17730295 Msa0721280:intron 35.0%
GGAAGAAAGTGAAAAGACAA+AGG - chr5_1:17730347-17730366 Msa0721280:CDS 35.0%
GAGCTTGATGAAAGATGAAA+TGG - chr5_1:17730443-17730462 Msa0721280:intron 35.0%
AAAGATGAAATGGTCACACA+GGG - chr5_1:17730453-17730472 Msa0721280:intron 35.0%
TACAAGAAGCAATCTTCTGT+TGG - chr5_1:17730478-17730497 Msa0721280:intron 35.0%
AGCAATCTTCTGTTGGATTA+TGG - chr5_1:17730485-17730504 Msa0721280:CDS 35.0%
GCAATCTTCTGTTGGATTAT+GGG - chr5_1:17730486-17730505 Msa0721280:CDS 35.0%
TCAAAAAAGGGAAGAATGTC+TGG - chr5_1:17730978-17730997 Msa0721280:CDS 35.0%
!! TTTGCCAAGGATTTTGACAG+GGG + chr5_1:17729707-17729726 None:intergenic 40.0%
!! GATTTGCCAAGGATTTTGAC+AGG + chr5_1:17729709-17729728 None:intergenic 40.0%
GAAGCCTAAAGCCATAACTT+GGG - chr5_1:17729999-17730018 Msa0721280:intron 40.0%
TGGGGACCATGATGATAAAA+AGG - chr5_1:17730162-17730181 Msa0721280:CDS 40.0%
ACAAAGGCAGAAAATAGGCA+AGG - chr5_1:17730363-17730382 Msa0721280:CDS 40.0%
CAAAGGCAGAAAATAGGCAA+GGG - chr5_1:17730364-17730383 Msa0721280:CDS 40.0%
GAAAGATGAAATGGTCACAC+AGG - chr5_1:17730452-17730471 Msa0721280:intron 40.0%
ATCTTCTGTTGGATTATGGG+AGG - chr5_1:17730489-17730508 Msa0721280:CDS 40.0%
GGCACAACTCAAGAAATTTG+AGG - chr5_1:17730534-17730553 Msa0721280:CDS 40.0%
! ATTTCTTTGGTGCAACTCCA+CGG + chr5_1:17731035-17731054 None:intergenic 40.0%
!! TTTGCCAAGGATTTTGACAG+GGG + chr5_1:17729707-17729726 None:intergenic 40.0%
!! GATTTGCCAAGGATTTTGAC+AGG + chr5_1:17729709-17729728 None:intergenic 40.0%
GAAGCCTAAAGCCATAACTT+GGG - chr5_1:17729999-17730018 Msa0721280:intron 40.0%
TGGGGACCATGATGATAAAA+AGG - chr5_1:17730162-17730181 Msa0721280:CDS 40.0%
ACAAAGGCAGAAAATAGGCA+AGG - chr5_1:17730363-17730382 Msa0721280:CDS 40.0%
CAAAGGCAGAAAATAGGCAA+GGG - chr5_1:17730364-17730383 Msa0721280:CDS 40.0%
GAAAGATGAAATGGTCACAC+AGG - chr5_1:17730452-17730471 Msa0721280:intron 40.0%
ATCTTCTGTTGGATTATGGG+AGG - chr5_1:17730489-17730508 Msa0721280:CDS 40.0%
GGCACAACTCAAGAAATTTG+AGG - chr5_1:17730534-17730553 Msa0721280:CDS 40.0%
! ATTTCTTTGGTGCAACTCCA+CGG + chr5_1:17731035-17731054 None:intergenic 40.0%
AACCCCTGGCAAATTTGACA+GGG + chr5_1:17729642-17729661 None:intergenic 45.0%
GTAGTGGCTTCACTTCTATC+TGG - chr5_1:17729741-17729760 Msa0721280:CDS 45.0%
CGAAGCCTAAAGCCATAACT+TGG - chr5_1:17729998-17730017 Msa0721280:intron 45.0%
GCAACCCAAGTTATGGCTTT+AGG + chr5_1:17730006-17730025 None:intergenic 45.0%
! AAGCCATAACTTGGGTTGCA+TGG - chr5_1:17730007-17730026 Msa0721280:intron 45.0%
! AGTGATCATGGTTGGTGCAA+GGG + chr5_1:17730033-17730052 None:intergenic 45.0%
GAAAGCTCATGCAGTGATCA+TGG + chr5_1:17730045-17730064 None:intergenic 45.0%
CGACACATTTCAGTTCCACA+AGG + chr5_1:17730662-17730681 None:intergenic 45.0%
CGAACTTGTGCATGTAACAG+AGG + chr5_1:17730707-17730726 None:intergenic 45.0%
AACCCCTGGCAAATTTGACA+GGG + chr5_1:17729642-17729661 None:intergenic 45.0%
GTAGTGGCTTCACTTCTATC+TGG - chr5_1:17729741-17729760 Msa0721280:CDS 45.0%
CGAAGCCTAAAGCCATAACT+TGG - chr5_1:17729998-17730017 Msa0721280:intron 45.0%
GCAACCCAAGTTATGGCTTT+AGG + chr5_1:17730006-17730025 None:intergenic 45.0%
! AAGCCATAACTTGGGTTGCA+TGG - chr5_1:17730007-17730026 Msa0721280:intron 45.0%
! AGTGATCATGGTTGGTGCAA+GGG + chr5_1:17730033-17730052 None:intergenic 45.0%
GAAAGCTCATGCAGTGATCA+TGG + chr5_1:17730045-17730064 None:intergenic 45.0%
CGACACATTTCAGTTCCACA+AGG + chr5_1:17730662-17730681 None:intergenic 45.0%
CGAACTTGTGCATGTAACAG+AGG + chr5_1:17730707-17730726 None:intergenic 45.0%
!!! GAATAAATTTTTTATTTTAA+AGG + chr5_1:17729833-17729852 None:intergenic 5.0%
!!! GAATAAATTTTTTATTTTAA+AGG + chr5_1:17729833-17729852 None:intergenic 5.0%
TCACCCCTGTCAAATTTGCC+AGG - chr5_1:17729635-17729654 Msa0721280:CDS 50.0%
CACCCCTGTCAAATTTGCCA+GGG - chr5_1:17729636-17729655 Msa0721280:CDS 50.0%
ACCCCTGTCAAATTTGCCAG+GGG - chr5_1:17729637-17729656 Msa0721280:CDS 50.0%
ACCCCTGGCAAATTTGACAG+GGG + chr5_1:17729641-17729660 None:intergenic 50.0%
GAACCCCTGGCAAATTTGAC+AGG + chr5_1:17729643-17729662 None:intergenic 50.0%
AATTTGCCAGGGGTTCTCCT+TGG - chr5_1:17729647-17729666 Msa0721280:CDS 50.0%
AACCCCTGGCAAATTTCCCA+GGG + chr5_1:17729679-17729698 None:intergenic 50.0%
AAACCCCTGGCAAATTTCCC+AGG + chr5_1:17729680-17729699 None:intergenic 50.0%
CATGCCCCTGTCAAAATCCT+TGG - chr5_1:17729700-17729719 Msa0721280:CDS 50.0%
! CAGTGATCATGGTTGGTGCA+AGG + chr5_1:17730034-17730053 None:intergenic 50.0%
GCTCATGCAGTGATCATGGT+TGG + chr5_1:17730041-17730060 None:intergenic 50.0%
GACAAATCTCTCGAGCCTTG+TGG - chr5_1:17730644-17730663 Msa0721280:intron 50.0%
! GGAAGAATGTCTGGAGCTAG+AGG - chr5_1:17730987-17731006 Msa0721280:CDS 50.0%
TCACCCCTGTCAAATTTGCC+AGG - chr5_1:17729635-17729654 Msa0721280:CDS 50.0%
CACCCCTGTCAAATTTGCCA+GGG - chr5_1:17729636-17729655 Msa0721280:CDS 50.0%
ACCCCTGTCAAATTTGCCAG+GGG - chr5_1:17729637-17729656 Msa0721280:CDS 50.0%
ACCCCTGGCAAATTTGACAG+GGG + chr5_1:17729641-17729660 None:intergenic 50.0%
GAACCCCTGGCAAATTTGAC+AGG + chr5_1:17729643-17729662 None:intergenic 50.0%
AATTTGCCAGGGGTTCTCCT+TGG - chr5_1:17729647-17729666 Msa0721280:CDS 50.0%
AACCCCTGGCAAATTTCCCA+GGG + chr5_1:17729679-17729698 None:intergenic 50.0%
AAACCCCTGGCAAATTTCCC+AGG + chr5_1:17729680-17729699 None:intergenic 50.0%
CATGCCCCTGTCAAAATCCT+TGG - chr5_1:17729700-17729719 Msa0721280:CDS 50.0%
! CAGTGATCATGGTTGGTGCA+AGG + chr5_1:17730034-17730053 None:intergenic 50.0%
GCTCATGCAGTGATCATGGT+TGG + chr5_1:17730041-17730060 None:intergenic 50.0%
GACAAATCTCTCGAGCCTTG+TGG - chr5_1:17730644-17730663 Msa0721280:intron 50.0%
! GGAAGAATGTCTGGAGCTAG+AGG - chr5_1:17730987-17731006 Msa0721280:CDS 50.0%
TTCTCCTTGGCTTAGGCCCT+GGG - chr5_1:17729660-17729679 Msa0721280:CDS 55.0%
ATTTCCCAGGGCCTAAGCCA+AGG + chr5_1:17729667-17729686 None:intergenic 55.0%
TAGGCCCTGGGAAATTTGCC+AGG - chr5_1:17729672-17729691 Msa0721280:CDS 55.0%
AGGCCCTGGGAAATTTGCCA+GGG - chr5_1:17729673-17729692 Msa0721280:CDS 55.0%
GGGCCATGCAACCCAAGTTA+TGG + chr5_1:17730013-17730032 None:intergenic 55.0%
GCTAAGGGCTCAACTGACAG+AGG - chr5_1:17730187-17730206 Msa0721280:CDS 55.0%
GCTGCAAAGTTTCGTAGCCG+TGG - chr5_1:17731015-17731034 Msa0721280:CDS 55.0%
TTCTCCTTGGCTTAGGCCCT+GGG - chr5_1:17729660-17729679 Msa0721280:CDS 55.0%
ATTTCCCAGGGCCTAAGCCA+AGG + chr5_1:17729667-17729686 None:intergenic 55.0%
TAGGCCCTGGGAAATTTGCC+AGG - chr5_1:17729672-17729691 Msa0721280:CDS 55.0%
AGGCCCTGGGAAATTTGCCA+GGG - chr5_1:17729673-17729692 Msa0721280:CDS 55.0%
GGGCCATGCAACCCAAGTTA+TGG + chr5_1:17730013-17730032 None:intergenic 55.0%
GCTAAGGGCTCAACTGACAG+AGG - chr5_1:17730187-17730206 Msa0721280:CDS 55.0%
GCTGCAAAGTTTCGTAGCCG+TGG - chr5_1:17731015-17731034 Msa0721280:CDS 55.0%
CCTAAGCCAAGGAGAACCCC+TGG + chr5_1:17729656-17729675 None:intergenic 60.0%
CCAGGGGTTCTCCTTGGCTT+AGG - chr5_1:17729653-17729672 Msa0721280:CDS 60.0%
GTTCTCCTTGGCTTAGGCCC+TGG - chr5_1:17729659-17729678 Msa0721280:CDS 60.0%
GGCCCTGGGAAATTTGCCAG+GGG - chr5_1:17729674-17729693 Msa0721280:CDS 60.0%
! TGACAGGGGCATGAAACCCC+TGG + chr5_1:17729693-17729712 None:intergenic 60.0%
CCTAAGCCAAGGAGAACCCC+TGG + chr5_1:17729656-17729675 None:intergenic 60.0%
CCAGGGGTTCTCCTTGGCTT+AGG - chr5_1:17729653-17729672 Msa0721280:CDS 60.0%
GTTCTCCTTGGCTTAGGCCC+TGG - chr5_1:17729659-17729678 Msa0721280:CDS 60.0%
GGCCCTGGGAAATTTGCCAG+GGG - chr5_1:17729674-17729693 Msa0721280:CDS 60.0%
! TGACAGGGGCATGAAACCCC+TGG + chr5_1:17729693-17729712 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 17729616 17731077 17729616 ID=Msa0721280;Name=Msa0721280
chr5_1 mRNA 17729616 17731077 17729616 ID=Msa0721280-mRNA-1;Parent=Msa0721280;Name=Msa0721280-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|0.8|1|1|5|0|187
chr5_1 exon 17730972 17731077 17730972 ID=Msa0721280-mRNA-1:exon:6792;Parent=Msa0721280-mRNA-1
chr5_1 exon 17730485 17730571 17730485 ID=Msa0721280-mRNA-1:exon:6791;Parent=Msa0721280-mRNA-1
chr5_1 exon 17730314 17730401 17730314 ID=Msa0721280-mRNA-1:exon:6790;Parent=Msa0721280-mRNA-1
chr5_1 exon 17730138 17730219 17730138 ID=Msa0721280-mRNA-1:exon:6789;Parent=Msa0721280-mRNA-1
chr5_1 exon 17729616 17729816 17729616 ID=Msa0721280-mRNA-1:exon:6788;Parent=Msa0721280-mRNA-1
chr5_1 CDS 17730972 17731077 17730972 ID=Msa0721280-mRNA-1:cds;Parent=Msa0721280-mRNA-1
chr5_1 CDS 17730485 17730571 17730485 ID=Msa0721280-mRNA-1:cds;Parent=Msa0721280-mRNA-1
chr5_1 CDS 17730314 17730401 17730314 ID=Msa0721280-mRNA-1:cds;Parent=Msa0721280-mRNA-1
chr5_1 CDS 17730138 17730219 17730138 ID=Msa0721280-mRNA-1:cds;Parent=Msa0721280-mRNA-1
chr5_1 CDS 17729616 17729816 17729616 ID=Msa0721280-mRNA-1:cds;Parent=Msa0721280-mRNA-1
Gene Sequence

>Msa0721280

ATGGCAATTTGTGACGGGCTCACCCCTGTCAAATTTGCCAGGGGTTCTCCTTGGCTTAGGCCCTGGGAAATTTGCCAGGGGTTTCATGCCCCTGTCAAAATCCTTGAGATTGCAGTCGTAGATGATCATGCTGATAATAAGGAAACTGGGGACCATGATGATAAAAAGGATGCTAAGGGCTCAACTGACAGAGATGCTGGGCTTGCAAAAATTGTAGCAGAGAAAAGATTGGCTTTAATTAAAGCATGGGAAGAAAGTGAAAAGACAAAGGCAGAAAATAGGGCATACAAGAAGCAATCTTCTGTTGGATTATGGGAGGAAAGCAAGAAATCATCTATAGAGGCACAACTCAAGAAATTTGAGGAAAATTTGGAAAGAAAGAAAGTTGAGTATATTTCAAAAATGAAAAATGAACTAGCTGAAATTCATCAATATGCTGAAGAGAAAAGAGCAATAGTTGAAGCTCAAAAAAGGGAAGAATGTCTGGAGCTAGAGGAAACAGCTGCAAAGTTTCGTAGCCGTGGAGTTGCACCAAAGAAATTGTTTGCATGCTTTAGCGCTTAA

Protein sequence

>Msa0721280

MAICDGLTPVKFARGSPWLRPWEICQGFHAPVKILEIAVVDDHADNKETGDHDDKKDAKGSTDRDAGLAKIVAEKRLALIKAWEESEKTKAENRAYKKQSSVGLWEESKKSSIEAQLKKFEENLERKKVEYISKMKNELAEIHQYAEEKRAIVEAQKREECLELEETAAKFRSRGVAPKKLFACFSA*